GABBR1
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Also known as hGB1aGPRC3A
Summary
GABBR1 (gamma-aminobutyric acid type B receptor subunit 1, HGNC:4070) is a protein-coding gene on chromosome 6p22.1, encoding Gamma-aminobutyric acid type B receptor subunit 1 (Q9UBS5). Component of a heterodimeric G-protein coupled receptor for GABA, formed by GABBR1 and GABBR2.
This gene encodes a receptor for gamma-aminobutyric acid (GABA), which is the main inhibitory neurotransmitter in the mammalian central nervous system. This receptor functions as a heterodimer with GABA(B) receptor 2. Defects in this gene may underlie brain disorders such as schizophrenia and epilepsy. Alternative splicing generates multiple transcript variants, but the full-length nature of some of these variants has not been determined.
Source: NCBI Gene 2550 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder with language delay and variable cognitive abnormalities (Strong, GenCC)
- GWAS associations: 34
- Clinical variants (ClinVar): 190 total — 7 likely-pathogenic
- Phenotypes (HPO): 21
- Druggable target: yes — 4 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001470
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4070 |
| Approved symbol | GABBR1 |
| Name | gamma-aminobutyric acid type B receptor subunit 1 |
| Location | 6p22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | hGB1a, GPRC3A |
| Ensembl gene | ENSG00000204681 |
| Ensembl biotype | protein_coding |
| OMIM | 603540 |
| Entrez | 2550 |
Gene structure
Transcript identifiers
Ensembl transcripts: 21 — 8 protein_coding, 8 retained_intron, 5 nonsense_mediated_decay
ENST00000355973, ENST00000377012, ENST00000377016, ENST00000377034, ENST00000462632, ENST00000467259, ENST00000472823, ENST00000473774, ENST00000476670, ENST00000477029, ENST00000478931, ENST00000485508, ENST00000486434, ENST00000488334, ENST00000489385, ENST00000489839, ENST00000491829, ENST00000494634, ENST00000494877, ENST00000706533, ENST00000967932
RefSeq mRNA: 4 — MANE Select: NM_001470
NM_001319053, NM_001470, NM_021903, NM_021904
CCDS: CCDS4663, CCDS4664, CCDS4665
Canonical transcript exons
ENST00000377034 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001681344 | 29632850 | 29633183 |
| ENSE00001690881 | 29630458 | 29630643 |
| ENSE00001941741 | 29602238 | 29603716 |
| ENSE00003458297 | 29609229 | 29609379 |
| ENSE00003469119 | 29604494 | 29604637 |
| ENSE00003494045 | 29610924 | 29611001 |
| ENSE00003507541 | 29606897 | 29607004 |
| ENSE00003553864 | 29607102 | 29607218 |
| ENSE00003559590 | 29622104 | 29622205 |
| ENSE00003561995 | 29623890 | 29624024 |
| ENSE00003565333 | 29608601 | 29608733 |
| ENSE00003581880 | 29621752 | 29621817 |
| ENSE00003588707 | 29631396 | 29631599 |
| ENSE00003607880 | 29606391 | 29606484 |
| ENSE00003625776 | 29613243 | 29613485 |
| ENSE00003643298 | 29612551 | 29612614 |
| ENSE00003656727 | 29629087 | 29629107 |
| ENSE00003663738 | 29604860 | 29604988 |
| ENSE00003672249 | 29623305 | 29623475 |
| ENSE00003676962 | 29627486 | 29627646 |
| ENSE00003689945 | 29605569 | 29605696 |
| ENSE00003692827 | 29621101 | 29621292 |
| ENSE00003758771 | 29632301 | 29632385 |
Expression profiles
Bgee: expression breadth ubiquitous, 194 present calls, max score 99.05.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.0853 / max 409.8574, expressed in 1422 samples.
FANTOM5 promoters (11 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 72461 | 8.1818 | 566 |
| 72470 | 4.7541 | 1232 |
| 72467 | 0.4133 | 217 |
| 72463 | 0.4060 | 110 |
| 72468 | 0.3771 | 191 |
| 72469 | 0.3204 | 154 |
| 72464 | 0.2236 | 81 |
| 72460 | 0.1770 | 82 |
| 72462 | 0.1423 | 81 |
| 72465 | 0.0669 | 28 |
Top tissues by expression
245 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 99.05 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.90 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.68 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.66 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 98.50 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 98.47 | gold quality |
| body of uterus | UBERON:0009853 | 98.27 | gold quality |
| cortical plate | UBERON:0005343 | 98.00 | gold quality |
| right ovary | UBERON:0002118 | 97.93 | gold quality |
| endocervix | UBERON:0000458 | 97.77 | gold quality |
| left uterine tube | UBERON:0001303 | 97.71 | gold quality |
| left ovary | UBERON:0002119 | 97.70 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.57 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 97.40 | gold quality |
| lower esophagus | UBERON:0013473 | 97.38 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 97.35 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 96.87 | gold quality |
| ascending aorta | UBERON:0001496 | 96.64 | gold quality |
| thoracic aorta | UBERON:0001515 | 96.64 | gold quality |
| right coronary artery | UBERON:0001625 | 96.61 | gold quality |
| adenohypophysis | UBERON:0002196 | 96.57 | gold quality |
| tibial nerve | UBERON:0001323 | 96.55 | gold quality |
| ectocervix | UBERON:0012249 | 96.49 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 96.49 | gold quality |
| aorta | UBERON:0000947 | 95.83 | gold quality |
| cerebellum | UBERON:0002037 | 95.69 | gold quality |
| popliteal artery | UBERON:0002250 | 95.58 | gold quality |
| tibial artery | UBERON:0007610 | 95.58 | gold quality |
| left coronary artery | UBERON:0001626 | 95.56 | gold quality |
| hypothalamus | UBERON:0001898 | 95.53 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.89 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
75 targeting GABBR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-6755-5P | 99.95 | 65.59 | 464 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-4699-3P | 99.71 | 70.15 | 3142 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-519A-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519B-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519C-3P | 99.67 | 71.67 | 1870 |
| HSA-MIR-3177-5P | 99.65 | 70.38 | 1174 |
| HSA-MIR-4663 | 99.62 | 65.33 | 957 |
| HSA-MIR-4499 | 99.62 | 67.29 | 1470 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-548AV-5P | 99.60 | 70.84 | 2107 |
| HSA-MIR-548K | 99.60 | 70.84 | 2107 |
| HSA-MIR-6132 | 99.60 | 65.83 | 1554 |
| HSA-MIR-6836-5P | 99.60 | 65.62 | 1538 |
| HSA-MIR-8054 | 99.48 | 70.81 | 2084 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-5589-3P | 99.29 | 68.30 | 1443 |
| HSA-MIR-6731-5P | 99.28 | 67.42 | 2375 |
| HSA-MIR-8085 | 99.28 | 67.56 | 2362 |
| HSA-MIR-3978 | 99.24 | 68.39 | 2201 |
Literature-anchored findings (GeneRIF, showing 40)
- Alterations in inhibitory synaptic transmission through GABA(B)R1 appears to affect differentially certain hippocampal circuits in a population of epileptic patients and could contribute to the pathophysiology of temporal lobe epilepsy. (PMID:12115687)
- The intracellular loops of the GB2 subunit are crucial for G-protein coupling of the heteromeric gamma-aminobutyrate B receptor. (PMID:12130687)
- evidence that the translated polymorphism of exon 7 may be functionally meaningful and impact cortical EEG oscillations (PMID:12555235)
- The GABA(B[1]) polymorphism (G1465A) confers a highly increased susceptibility to temporal lobe epilepsy. Moreover, it seems to influence the severity of this common epileptic disorder (PMID:12601092)
- Post hoc analyses showed an association between EEG phenotype and exon 7 genotype in normal subjects only. (PMID:12645817)
- GABBR1 gene might not be a susceptibility gene for childhood absence epilepsy at least in the Chinese population (PMID:12770685)
- GHB, administered in vivo, reduces MAP kinase phosphorylation via a direct activation of GABAB receptors by GHB, but was found ineffective on MAP kinase phosphorylation in brain slices (PMID:12923192)
- Increased expression of GABA(B) receptor subtype 1 indicates augmented presynaptic inhibition of glutamate release as a possible protective mechanism in temporal lobe epilepsy. (PMID:14625043)
- Altered GABA(B1a) receptor mRNA expression occurs in human temporal lobe epilepsy; possibly the observed changes may also serve to counteract ongoing hyperexcitability. (PMID:14643764)
- GABAB receptor cell surface stability is modulated by phosphorylation and chronic agonist treatment (PMID:14707142)
- GABA(B) receptor subunit GABA(B)R1 is found on the same neurons and follows the same distribution patterns in the basal ganglia as the GABABR2 receptor subunit. (PMID:14961561)
- Association of the GABA(B)R1 with the GABA(A) receptor gamma2S subunit robustly promotes cell surface expression of GABA(B)R1 in the absence of GABA(B)R2, that is usually required for efficient trafficking of GABA(B)R1 to the cell surface. (PMID:14966130)
- The GABA(B) receptor may be present as a heterodimer with subunits of GABA(B1) and GABA(B2) in the human colon. (PMID:14978362)
- Data show that the two CCP modules of the GABA(B) 1a receptor have strikingly different structural properties, reflecting their different functions. (PMID:15304491)
- The simultaneous blockade of GABAA and GABAB receptors suppressed acrosome reaction induced by follicular fluid(FF). GABA receptors may play role in sperm activation. This may shed further light on mechanism of FF action on human sperm acrosome reaction. (PMID:15474078)
- identification of the minimal functional domain which still binds a competitive radioligand and leads to a functional, GABA-responding receptor when co-expressed with GABA(B2) (PMID:15482257)
- The observed trends suggest that further investigations of the role of the GABBR1 gene in obsessive-compulsive disorder are warranted. (PMID:15685626)
- The changes in hippocampal GBR1 may reflect alterations in the balance between excitatory and inhibitory neurotransmitter systems, which likely contributes to dysfunction of hippocampal circuitry in Alzheimer disease. (PMID:15759131)
- Temporal lobe epilepsy preceded by febrile seizures is not associated with the polymorphisms or mutations in the GABBR1 gene. (PMID:15799783)
- positive allosteric modulators bind a single subunit of (B) receptor (metabotropic glutamate receptor) dimers (PMID:15863499)
- COPI and 14-3-3 specifically bind to the GB1 RSR sequence and that COPI is involved in its intracellular retention (PMID:16176975)
- Functional GABA(B) receptors are expressed in human airway smooth muscle cells (PMID:16829628)
- the Ala20Val polymorphism of the GABA(B)R1 gene may be associated with obstructive sleep apnea syndrome(OSAS);Gly489Ser polymorphism does not seem to be involved in OSAS; C/C variant of the Phe658Phe polymorphism GABA(B)R1 gene seems associated with OSAS (PMID:17264536)
- CaRs and GABA-B-R subunits can form heteromeric complexes in cells, and their interactions affect cell surface expression and signaling of CaR, which may contribute to extracellular Ca(2+)-dependent receptor activation in target tissues (PMID:17591780)
- Data suggest the stimulation of GABA B R signaling as a novel target for the treatment and prevention of pancreatic cancer. (PMID:18098271)
- The genotype distribution varied significantly between patients and controls. Heterozygous carriers of the A-allele had a 10-fold increase in risk for MTLE-HS (OR 10.01; 95% CI 3.98-25.18, p=3.788E-08). (PMID:18255321)
- no significant association between the GABBR1 c.1456G>A polymorphism and sporadic or familial temporal lobe epilepsy (PMID:18355961)
- GABA may modulate an uncharacterized signaling cascade via GABA(B) receptors coupled to G(i) protein in airway epithelium (PMID:18403780)
- No evidence of significant allelic, genotypic, or haplotypic associations were identified in the tag SNPs of the GABBR1 gene in patients with MTLE, and the polymorphism at G1465A was not observed in samples of this study. (PMID:18653317)
- Levels of GABBR1 are significantly decreased in brains of patients with autism compared with normal brains. (PMID:19002745)
- GABA-B(1A) receptors are able to activate the ERK1/2 pathway despite the absence of surface targetting partner GABA-B(2) (PMID:19052921)
- Data show that GABA is a potent chemoattractant of HUCB stem/progenitor cells specifically through GABA(B)R activation. (PMID:19327013)
- variants of GABBR1 and GABBR2 are associated with nicotine dependence in European- and African-American populations (PMID:19763258)
- GABAB1 subunits interact with DGCR6 in the endoplasmic reticulum prior to their recruitment into functional GABAB receptors. (PMID:20036641)
- Significant reductions in GABA(B) receptor subunit 1 density are demonstrated in cingulate cortex and fusiform gyrus from patients with autism compared to controls. (PMID:20557420)
- This chapter summarizes current understanding of the molecular function of the GABA(B) receptor and recent developments in the identification of allosteric modulators. (PMID:20655478)
- This chapter focuses on the recently emerged mechanisms of GABA(B) receptor exocytosis, endocytosis, recycling, and degradation. (PMID:20655479)
- The role that this phosphorylation plays in determining GABA(B)R effector coupling and their trafficking within the endocytic pathway, is discussed. (PMID:20655480)
- The relationships between the GABA(B) receptor, its effectors and associated proteins that mediate GABA(B) receptor function within the brain, is described. (PMID:20655481)
- Current knowledge on a new role of GABA(B)R as an ambience-dependent regulator of synaptic signaling, is presented. (PMID:20655482)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gabbr1b | ENSDARG00000016667 |
| danio_rerio | gabbr1a | ENSDARG00000018967 |
| mus_musculus | Gabbr1 | ENSMUSG00000024462 |
| rattus_norvegicus | Gabbr1 | ENSRNOG00000000774 |
| drosophila_melanogaster | GABA-B-R1 | FBGN0260446 |
| caenorhabditis_elegans | WBGENE00021528 |
Paralogs (2): GABBR2 (ENSG00000136928), GPR156 (ENSG00000175697)
Protein
Protein identifiers
Gamma-aminobutyric acid type B receptor subunit 1 — Q9UBS5 (reviewed: Q9UBS5)
All UniProt accessions (9): A0A1U9X7R0, C9J342, C9JZG6, Q9UBS5, F8WAS6, F8WAV2, F8WDC0, F8WF38, Q5SUJ9
UniProt curated annotations — full annotation on UniProt →
Function. Component of a heterodimeric G-protein coupled receptor for GABA, formed by GABBR1 and GABBR2. Within the heterodimeric GABA receptor, only GABBR1 seems to bind agonists, while GABBR2 mediates coupling to G proteins. Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of down-stream effectors, such as adenylate cyclase. Signaling inhibits adenylate cyclase, stimulates phospholipase A2, activates potassium channels, inactivates voltage-dependent calcium-channels and modulates inositol phospholipid hydrolysis. Calcium is required for high affinity binding to GABA. Plays a critical role in the fine-tuning of inhibitory synaptic transmission. Pre-synaptic GABA receptor inhibits neurotransmitter release by down-regulating high-voltage activated calcium channels, whereas postsynaptic GABA receptor decreases neuronal excitability by activating a prominent inwardly rectifying potassium (Kir) conductance that underlies the late inhibitory postsynaptic potentials. Not only implicated in synaptic inhibition but also in hippocampal long-term potentiation, slow wave sleep, muscle relaxation and antinociception. Activated by (-)-baclofen, cgp27492 and blocked by phaclofen. Isoform 1E may regulate the formation of functional GABBR1/GABBR2 heterodimers by competing for GABBR2 binding. This could explain the observation that certain small molecule ligands exhibit differential affinity for central versus peripheral sites.
Subunit / interactions. Heterodimer of GABBR1 and GABBR2. Homodimers may form, but are inactive. Isoform 1E (without C-terminal intracellular domain) is unable to dimerize via a coiled-coil interaction with GABBR2. Interacts (via C-terminus) with ATF4 (via leucine zipper domain). Interacts with JAKMIP1.
Subcellular location. Cell membrane. Postsynaptic cell membrane. Cell projection. Dendrite Secreted.
Tissue specificity. Highly expressed in brain. Weakly expressed in heart, small intestine and uterus. Isoform 1A: Mainly expressed in granular cell and molecular layer. Isoform 1B: Mainly expressed in Purkinje cells. Isoform 1E: Predominantly expressed in peripheral tissues as kidney, lung, trachea, colon, small intestine, stomach, bone marrow, thymus and mammary gland.
Disease relevance. Neurodevelopmental disorder with language delay and variable cognitive abnormalities (NEDLC) [MIM:620502] An autosomal dominant disorder characterized by language delay ranging from mild to severe, varying degrees of intellectual disability, and learning difficulties. Additional features include early motor delay, muscular hypotonia, behavioral abnormalities, sleep disorders, and seizures. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Alpha-helical parts of the C-terminal intracellular region mediate heterodimeric interaction with GABBR2. The linker region between the transmembrane domain 3 (TM3) and the transmembrane domain 4 (TM4) probably plays a role in the specificity for G-protein coupling.
Miscellaneous. Major isoform in almost all peripheral tissues, although containing a premature stop codon in the mRNA and thus being a potential target for nonsense-mediated mRNA decay. May act as an antagonist of GABA-B receptors, being able to disrupt the normal association between isoform 1A and GABBR2.
Similarity. Belongs to the G-protein coupled receptor 3 family. GABA-B receptor subfamily.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UBS5-1 | 1A | yes |
| Q9UBS5-2 | 1B | |
| Q9UBS5-3 | 1C | |
| Q9UBS5-4 | 1D | |
| Q9UBS5-5 | 1E, Truncated |
RefSeq proteins (4): NP_001305982, NP_001461, NP_068703, NP_068704 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000436 | Sushi_SCR_CCP_dom | Domain |
| IPR001828 | ANF_lig-bd_rcpt | Domain |
| IPR002455 | GPCR3_GABA-B | Family |
| IPR002456 | GPCR_3_GABA_rcpt_B1 | Family |
| IPR017978 | GPCR_3_C | Domain |
| IPR028082 | Peripla_BP_I | Homologous_superfamily |
| IPR035976 | Sushi/SCR/CCP_sf | Homologous_superfamily |
Pfam: PF00003, PF00084, PF01094
UniProt features (145 total): strand 31, helix 27, binding site 14, turn 10, topological domain 8, sequence conflict 8, transmembrane region 7, glycosylation site 7, sequence variant 7, mutagenesis site 6, disulfide bond 4, splice variant 4, region of interest 3, domain 2, compositionally biased region 2, modified residue 2, signal peptide 1, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
24 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4PAS | X-RAY DIFFRACTION | 1.62 |
| 4MS4 | X-RAY DIFFRACTION | 1.9 |
| 4MR7 | X-RAY DIFFRACTION | 2.15 |
| 4MR8 | X-RAY DIFFRACTION | 2.15 |
| 4MQF | X-RAY DIFFRACTION | 2.22 |
| 4MS1 | X-RAY DIFFRACTION | 2.25 |
| 4MQE | X-RAY DIFFRACTION | 2.35 |
| 4MR9 | X-RAY DIFFRACTION | 2.35 |
| 4MS3 | X-RAY DIFFRACTION | 2.5 |
| 4MRM | X-RAY DIFFRACTION | 2.86 |
| 7C7S | ELECTRON MICROSCOPY | 2.9 |
| 7C7Q | ELECTRON MICROSCOPY | 3 |
| 6W2Y | ELECTRON MICROSCOPY | 3.2 |
| 6WIV | ELECTRON MICROSCOPY | 3.3 |
| 7EB2 | ELECTRON MICROSCOPY | 3.5 |
| 7CUM | ELECTRON MICROSCOPY | 3.52 |
| 6W2X | ELECTRON MICROSCOPY | 3.6 |
| 6UO8 | ELECTRON MICROSCOPY | 3.63 |
| 6VJM | ELECTRON MICROSCOPY | 3.97 |
| 7CA3 | ELECTRON MICROSCOPY | 4.5 |
| 6UO9 | ELECTRON MICROSCOPY | 4.8 |
| 6UOA | ELECTRON MICROSCOPY | 6.3 |
| 7CA5 | ELECTRON MICROSCOPY | 7.6 |
| 6HKC | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UBS5-F1 | 84.48 | 0.55 |
Antibody-complex structures (SAbDab): 1 — 7EB2
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (14): 247; 247; 247; 270; 270; 270; 287; 287; 287; 367; 367; 466 …
Post-translational modifications (2): 873, 930
Disulfide bonds (4): 100–145, 131–157, 220–246, 376–410
Glycosylation sites (7): 24, 84, 409, 440, 482, 502, 514
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 182 | abolishes signaling via g-proteins. abolishes antagonist binding. |
| 230 | slightly decreases signaling via g-proteins. |
| 234 | decreases signaling via g-proteins. |
| 287 | strongly reduces signaling via g-proteins. abolishes antagonist binding. |
| 367 | strongly reduces signaling via g-proteins. no effect on antagonist binding. |
| 395 | strongly reduces signaling via g-proteins. strongly reduces antagonist binding. |
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296041 | Activation of G protein gated Potassium channels |
| R-HSA-418594 | G alpha (i) signalling events |
| R-HSA-420499 | Class C/3 (Metabotropic glutamate/pheromone receptors) |
| R-HSA-977444 | GABA B receptor activation |
| R-HSA-997272 | Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
MSigDB gene sets: 432 (showing top):
RNGTGGGC_UNKNOWN, GOBP_RESPONSE_TO_ETHANOL, GOBP_GLUTAMATE_SECRETION, GOBP_ACID_SECRETION, MCLACHLAN_DENTAL_CARIES_UP, GOBP_REGULATION_OF_ORGANIC_ACID_TRANSPORT, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, REACTOME_POTASSIUM_CHANNELS, REACTOME_INWARDLY_RECTIFYING_K_CHANNELS, GOZGIT_ESR1_TARGETS_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_OSTEOBLAST_DIFFERENTIATION, GOBP_HORMONE_TRANSPORT, GOBP_GAMMA_AMINOBUTYRIC_ACID_SIGNALING_PATHWAY
GO Biological Process (19): osteoblast differentiation (GO:0001649), adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (GO:0007193), gamma-aminobutyric acid signaling pathway (GO:0007214), negative regulation of cell population proliferation (GO:0008285), positive regulation of glutamate secretion (GO:0014049), negative regulation of gamma-aminobutyric acid secretion (GO:0014053), negative regulation of epinephrine secretion (GO:0032811), negative regulation of dopamine secretion (GO:0033602), response to nicotine (GO:0035094), response to ethanol (GO:0045471), negative regulation of synaptic transmission (GO:0050805), synaptic transmission, GABAergic (GO:0051932), positive regulation of growth hormone secretion (GO:0060124), neuron-glial cell signaling (GO:0150099), signal transduction (GO:0007165), G protein-coupled receptor signaling pathway (GO:0007186), regulation of glutamate secretion (GO:0014048), regulation of postsynaptic membrane potential (GO:0060078), regulation of presynaptic membrane potential (GO:0099505)
GO Molecular Function (8): G protein-coupled GABA receptor activity (GO:0004965), protein heterodimerization activity (GO:0046982), obsolete G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential (GO:0099579), obsolete G protein-coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential (GO:0150047), extracellular matrix protein binding (GO:1990430), G protein-coupled receptor activity (GO:0004930), protein binding (GO:0005515), GABA receptor activity (GO:0016917)
GO Cellular Component (26): obsolete extracellular space (GO:0005615), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), synaptic vesicle (GO:0008021), axolemma (GO:0030673), mitochondrial membrane (GO:0031966), G protein-coupled receptor heterodimeric complex (GO:0038039), presynaptic membrane (GO:0042734), neuronal cell body (GO:0043025), dendritic spine (GO:0043197), dendritic shaft (GO:0043198), postsynaptic membrane (GO:0045211), Schaffer collateral - CA1 synapse (GO:0098685), glutamatergic synapse (GO:0098978), GABA-ergic synapse (GO:0098982), G protein-coupled GABA receptor complex (GO:1902712), extracellular region (GO:0005576), cytoplasm (GO:0005737), membrane (GO:0016020), dendrite (GO:0030425), G protein-coupled receptor dimeric complex (GO:0038037), cell projection (GO:0042995), synapse (GO:0045202), synaptic membrane (GO:0097060), presynapse (GO:0098793), GABA receptor complex (GO:1902710)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| G protein gated Potassium channels | 1 |
| GPCR downstream signalling | 1 |
| GPCR ligand binding | 1 |
| GABA receptor activation | 1 |
| Activation of GABAB receptors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| synapse | 3 |
| cell-cell signaling | 2 |
| GABA receptor activity | 2 |
| glutamate secretion | 2 |
| negative regulation of catecholamine secretion | 2 |
| chemical synaptic transmission | 2 |
| G protein-coupled receptor activity | 2 |
| regulation of membrane potential | 2 |
| transmembrane signaling receptor activity | 2 |
| organelle membrane | 2 |
| presynapse | 2 |
| G protein-coupled receptor dimeric complex | 2 |
| synaptic membrane | 2 |
| dendrite | 2 |
| postsynapse | 2 |
| ossification | 1 |
| cell differentiation | 1 |
| adenylate cyclase-modulating G protein-coupled receptor signaling pathway | 1 |
| adenylate cyclase inhibitor activity | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| regulation of glutamate secretion | 1 |
| positive regulation of organic acid transport | 1 |
| positive regulation of amino acid transport | 1 |
| positive regulation of secretion by cell | 1 |
| gamma-aminobutyric acid secretion | 1 |
| regulation of gamma-aminobutyric acid secretion | 1 |
| negative regulation of organic acid transport | 1 |
| negative regulation of secretion | 1 |
| negative regulation of amino acid transport | 1 |
| regulation of epinephrine secretion | 1 |
| epinephrine secretion | 1 |
| dopamine secretion | 1 |
| regulation of dopamine secretion | 1 |
| response to chemical | 1 |
| response to alcohol | 1 |
| negative regulation of cell communication | 1 |
| negative regulation of signaling | 1 |
Protein interactions and networks
STRING
1598 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GABBR1 | GABBR2 | O75899 | 985 |
| GABBR1 | CASR | P41180 | 737 |
| GABBR1 | LGI1 | O95970 | 736 |
| GABBR1 | MPDZ | O75970 | 728 |
| GABBR1 | GABRB1 | P18505 | 720 |
| GABBR1 | ATF5 | Q9Y2D1 | 713 |
| GABBR1 | GABRA1 | P14867 | 705 |
| GABBR1 | GABRG2 | P18507 | 700 |
| GABBR1 | CACNA1G | O43497 | 695 |
| GABBR1 | GABRD | O14764 | 692 |
| GABBR1 | ATF7 | P17544 | 666 |
| GABBR1 | PTP4A1 | Q93096 | 649 |
| GABBR1 | GABRA5 | P31644 | 641 |
| GABBR1 | GAD2 | Q05329 | 638 |
| GABBR1 | GAD1 | Q99259 | 629 |
IntAct
31 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GABBR2 | GABBR1 | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| GABBR1 | GABBR2 | psi-mi:“MI:0915”(physical association) | 0.740 |
| GABBR1 | NSF | psi-mi:“MI:0407”(direct interaction) | 0.570 |
| GABBR1 | NSF | psi-mi:“MI:0403”(colocalization) | 0.570 |
| NSF | GABBR1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| GABBR1 | MAX | psi-mi:“MI:0915”(physical association) | 0.520 |
| GPR37 | GABBR1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| GABBR1 | GPR37 | psi-mi:“MI:0915”(physical association) | 0.510 |
| GABBR1 | ABL1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CRK | GABBR1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GABBR1 | FYN | psi-mi:“MI:0915”(physical association) | 0.400 |
| GRB2 | GABBR1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GABBR1 | NCK1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GABBR1 | PIK3R1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GABBR1 | BDKRB1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GABBR1 | CCR8 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GABBR1 | DRD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GABBR1 | SMO | psi-mi:“MI:0915”(physical association) | 0.370 |
| ALB | CDC45 | psi-mi:“MI:0914”(association) | 0.350 |
| GIGYF1 | DYNC1I1 | psi-mi:“MI:0914”(association) | 0.350 |
| RIMS1 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| PPP1R13L | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| GABBR1 | PPP1R12A | psi-mi:“MI:0914”(association) | 0.350 |
| GABBR1 | MAX | psi-mi:“MI:0915”(physical association) | 0.000 |
| CHFR | GABBR1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (59): Usp14 (Two-hybrid), GABBR2 (Affinity Capture-Western), USP14 (Affinity Capture-Western), DDIT3 (Affinity Capture-Western), DDIT3 (Co-localization), GABBR1 (Two-hybrid), JAKMIP1 (Affinity Capture-Western), JAKMIP1 (Reconstituted Complex), GABBR2 (Affinity Capture-Western), KCTD16 (Affinity Capture-Western), GABBR1 (Affinity Capture-Western), GABBR1 (Affinity Capture-Luminescence), GNB1 (Affinity Capture-Western), GNB1 (Affinity Capture-Luminescence), GNG2 (Affinity Capture-Luminescence)
ESM2 similar proteins: A0A1L8F5J9, A0JN27, F1LTR1, F1NBL0, O15294, P35438, P35439, P56558, P61201, P61202, P61203, P61599, P61600, P63138, P79101, P81436, Q03555, Q05586, Q13888, Q15303, Q27HV0, Q2PFM2, Q2TBV5, Q4L208, Q58ED9, Q5R1P0, Q5SP67, Q5ZJ75, Q61527, Q62956, Q6IQT4, Q6IR75, Q6P1K8, Q6P632, Q7ZXR3, Q8BUV3, Q8C6G8, Q8CGY8, Q8R4D1, Q91854
Diamond homologs: G5ECB2, O75899, O88871, Q6PCP7, Q80T41, Q8K451, Q8NFN8, Q9UBS5, Q9WV18, Q9Z0U4, H2L0Q3, O70410, P23385, P31421, P31422, P31424, P41594, P91685, P97772, Q09630, Q13255, Q14416, Q14832, Q14BI2, Q1ZZH1, Q3UVX5, Q54SW3, Q55AP3, Q5RAL3, Q5U9X3, Q9QYS2, O02839, O08569, O19124, O62685, O62837, O88174, P04003, P06681, P08174
SIGNOR signaling
12 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CAMK2A | down-regulates | GABBR1 | phosphorylation |
| GABBR1 | “form complex” | “GABA-B receptor” | binding |
| CAMK2B | “down-regulates quantity by destabilization” | GABBR1 | phosphorylation |
| ERK1/2 | “down-regulates quantity by destabilization” | GABBR1 | phosphorylation |
| MAPK3 | “down-regulates quantity by destabilization” | GABBR1 | phosphorylation |
| MAPK1 | “down-regulates quantity by destabilization” | GABBR1 | phosphorylation |
| KIF5B | “up-regulates activity” | GABBR1 | relocalization |
| JAKMIP1 | “up-regulates quantity” | GABBR1 |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 24 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| FCGR3A-mediated phagocytosis | 5 | 44.6× | 1e-05 |
| Cell Cycle, Mitotic | 5 | 11.5× | 1e-03 |
| Cell Cycle | 5 | 8.6× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
190 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 7 |
| Uncertain significance | 140 |
| Likely benign | 13 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (7)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1804147 | NM_001470.4(GABBR1):c.1190C>T (p.Ala397Val) | Likely pathogenic |
| 1804152 | NM_001470.4(GABBR1):c.1603G>A (p.Ala535Thr) | Likely pathogenic |
| 1804153 | NM_001470.4(GABBR1):c.1104G>C (p.Glu368Asp) | Likely pathogenic |
| 1804154 | NM_001470.4(GABBR1):c.2018G>A (p.Gly673Asp) | Likely pathogenic |
| 2502369 | NM_001470.4(GABBR1):c.1042G>C (p.Ala348Pro) | Likely pathogenic |
| 3376843 | NM_001470.4(GABBR1):c.2546T>C (p.Leu849Pro) | Likely pathogenic |
| 4845651 | NM_001470.4(GABBR1):c.1604C>T (p.Ala535Val) | Likely pathogenic |
SpliceAI
4061 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:29556346:TGCAC:T | acceptor_gain | 1.0000 |
| 6:29556348:CAC:C | acceptor_gain | 1.0000 |
| 6:29556351:C:A | acceptor_loss | 1.0000 |
| 6:29556352:T:G | acceptor_loss | 1.0000 |
| 6:29604489:CGCA:C | donor_loss | 1.0000 |
| 6:29604490:GCAC:G | donor_loss | 1.0000 |
| 6:29604491:CA:C | donor_loss | 1.0000 |
| 6:29604498:G:C | donor_gain | 1.0000 |
| 6:29604510:T:A | donor_gain | 1.0000 |
| 6:29604854:CCTTA:C | donor_loss | 1.0000 |
| 6:29604855:CTTAC:C | donor_loss | 1.0000 |
| 6:29604856:TTACC:T | donor_loss | 1.0000 |
| 6:29604857:TA:T | donor_loss | 1.0000 |
| 6:29604858:A:AG | donor_loss | 1.0000 |
| 6:29604936:T:TA | donor_gain | 1.0000 |
| 6:29604988:CCTA:C | acceptor_loss | 1.0000 |
| 6:29604989:CTAG:C | acceptor_loss | 1.0000 |
| 6:29605501:T:TA | donor_gain | 1.0000 |
| 6:29605505:AGT:A | donor_gain | 1.0000 |
| 6:29605567:A:AC | donor_gain | 1.0000 |
| 6:29605567:ACTG:A | donor_gain | 1.0000 |
| 6:29605568:C:CC | donor_gain | 1.0000 |
| 6:29605568:CTG:C | donor_gain | 1.0000 |
| 6:29605568:CTGC:C | donor_gain | 1.0000 |
| 6:29606405:ATCTT:A | donor_gain | 1.0000 |
| 6:29606406:T:C | donor_gain | 1.0000 |
| 6:29606409:T:TA | donor_gain | 1.0000 |
| 6:29606851:AGC:A | donor_gain | 1.0000 |
| 6:29606881:T:TA | donor_gain | 1.0000 |
| 6:29606894:TACCT:T | donor_loss | 1.0000 |
AlphaMissense
6252 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:29604513:A:G | L898P | 1.000 |
| 6:29604963:A:T | V822D | 1.000 |
| 6:29604966:G:C | P821R | 1.000 |
| 6:29604966:G:T | P821H | 1.000 |
| 6:29605575:A:C | N811K | 1.000 |
| 6:29605575:A:T | N811K | 1.000 |
| 6:29605591:C:T | G806D | 1.000 |
| 6:29605606:T:A | D801V | 1.000 |
| 6:29605606:T:C | D801G | 1.000 |
| 6:29605606:T:G | D801A | 1.000 |
| 6:29605607:C:G | D801H | 1.000 |
| 6:29605645:G:T | A788D | 1.000 |
| 6:29605648:A:G | L787P | 1.000 |
| 6:29605650:G:C | F786L | 1.000 |
| 6:29605650:G:T | F786L | 1.000 |
| 6:29605652:A:G | F786L | 1.000 |
| 6:29605657:C:T | G784E | 1.000 |
| 6:29605658:C:G | G784R | 1.000 |
| 6:29605658:C:T | G784R | 1.000 |
| 6:29605666:A:G | L781P | 1.000 |
| 6:29605675:C:T | G778E | 1.000 |
| 6:29605676:C:G | G778R | 1.000 |
| 6:29605676:C:T | G778R | 1.000 |
| 6:29606419:G:C | C761W | 1.000 |
| 6:29606420:C:G | C761S | 1.000 |
| 6:29606420:C:T | C761Y | 1.000 |
| 6:29606421:A:G | C761R | 1.000 |
| 6:29606421:A:T | C761S | 1.000 |
| 6:29607159:C:A | K684N | 1.000 |
| 6:29607159:C:G | K684N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000310186 (6:29606158 A>T), RS1000337210 (6:29625215 T>C), RS1000342470 (6:29614378 C>T), RS1000435898 (6:29613956 C>G,T), RS1000615469 (6:29603917 G>A), RS1000627365 (6:29626473 ACCC>A), RS1000681872 (6:29605943 C>G,T), RS1000725539 (6:29617143 A>AATGAAATT), RS1000773907 (6:29611780 A>G), RS1000932296 (6:29603669 C>A), RS1000980623 (6:29627895 C>T), RS1001011767 (6:29628397 C>G), RS1001051294 (6:29604457 C>T), RS1001156432 (6:29612009 CT>C,CTT), RS1001285274 (6:29607596 C>T)
Disease associations
OMIM: gene MIM:603540 | disease phenotypes: MIM:620502, MIM:162200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with language delay and variable cognitive abnormalities | Strong | Autosomal dominant |
Mondo (3): intellectual disability (MONDO:0001071), neurodevelopmental disorder with language delay and variable cognitive abnormalities (MONDO:0957779), neurofibromatosis type 1 (MONDO:0018975)
Orphanet (2): Neurofibromatosis type 1 (Orphanet:636), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
21 total (21 of 21 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000343 | Long philtrum |
| HP:0000431 | Wide nasal bridge |
| HP:0000609 | Optic nerve hypoplasia |
| HP:0000639 | Nystagmus |
| HP:0000729 | Autistic behavior |
| HP:0000733 | Motor stereotypy |
| HP:0000750 | Delayed speech and language development |
| HP:0000958 | Dry skin |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001270 | Motor delay |
| HP:0002360 | Sleep disturbance |
| HP:0002650 | Scoliosis |
| HP:0003593 | Infantile onset |
| HP:0004209 | Clinodactyly of the 5th finger |
| HP:0007018 | Attention deficit hyperactivity disorder |
| HP:0008404 | Nail dystrophy |
| HP:0012427 | Increased femoral anteversion |
| HP:0040183 | Encopresis |
GWAS associations
34 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000460_3 | Nasopharyngeal carcinoma | 9.000000e-17 |
| GCST001438_6 | Crohn’s disease | 2.000000e-10 |
| GCST003383_1 | Platelet count | 1.000000e-09 |
| GCST003880_7 | Schizophrenia | 5.000000e-10 |
| GCST004294_14 | Nicotine dependence | 1.000000e-06 |
| GCST004294_9 | Nicotine dependence | 5.000000e-06 |
| GCST004521_112 | Autism spectrum disorder or schizophrenia | 3.000000e-26 |
| GCST004521_171 | Autism spectrum disorder or schizophrenia | 4.000000e-14 |
| GCST004521_263 | Autism spectrum disorder or schizophrenia | 7.000000e-17 |
| GCST004521_268 | Autism spectrum disorder or schizophrenia | 7.000000e-12 |
| GCST004521_295 | Autism spectrum disorder or schizophrenia | 6.000000e-18 |
| GCST004521_56 | Autism spectrum disorder or schizophrenia | 1.000000e-22 |
| GCST004521_58 | Autism spectrum disorder or schizophrenia | 1.000000e-17 |
| GCST004521_79 | Autism spectrum disorder or schizophrenia | 1.000000e-16 |
| GCST004521_80 | Autism spectrum disorder or schizophrenia | 1.000000e-15 |
| GCST004610_11 | White blood cell count | 3.000000e-13 |
| GCST004744_50 | Lung adenocarcinoma | 9.000000e-07 |
| GCST004748_97 | Lung cancer | 7.000000e-19 |
| GCST004749_82 | Lung cancer in ever smokers | 2.000000e-13 |
| GCST006446_4 | Ulna and radius bone mineral density | 8.000000e-07 |
| GCST008163_407 | Height | 2.000000e-06 |
| GCST010142_16 | Fish- and plant-related diet | 2.000000e-10 |
| GCST010142_19 | Fish- and plant-related diet | 4.000000e-10 |
| GCST010142_34 | Fish- and plant-related diet | 7.000000e-09 |
| GCST010142_35 | Fish- and plant-related diet | 8.000000e-09 |
| GCST010142_42 | Fish- and plant-related diet | 1.000000e-08 |
| GCST010142_7 | Fish- and plant-related diet | 3.000000e-12 |
| GCST010702_75 | Subcortical volume (MOSTest) | 3.000000e-11 |
| GCST010703_272 | Brain morphology (MOSTest) | 7.000000e-16 |
| GCST012355_35 | Depression | 2.000000e-09 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004309 | platelet count |
| EFO:0007933 | radius bone mineral density |
| EFO:0008111 | diet measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009456 | Neurofibromatosis 1 | C04.557.580.600.580.590.650; C04.700.631.650; C10.562.600.500; C10.574.500.549.400; C10.668.829.675; C16.320.400.560.400; C16.320.700.633.650 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2064 (SINGLE PROTEIN), CHEMBL2111463 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 186,196 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL701 | BACLOFEN | 4 | 25,446 |
| CHEMBL301742 | ARBACLOFEN | 3 | 253 |
| CHEMBL112797 | SGS-742 | 2 | 309 |
| CHEMBL96 | GAMMA-AMINOBUTYRIC ACID | 1 | 160,188 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — GABAB receptors
Most potent curated ligand interactions (16 total), top 16:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| CGP 56999A | Antagonist | 9.2 | pIC50 |
| CGP62349 | Antagonist | 9.0 | pIC50 |
| [125I]CGP71872 | Antagonist | 9.0 | pKd |
| [125I]CGP64213 | Antagonist | 8.9 | pKd |
| CGP 54626A | Antagonist | 8.8 | pIC50 |
| CGP 64213 | Antagonist | 8.6 | pIC50 |
| CGP 71872 | Antagonist | 8.4 | pIC50 |
| lesogaberan | Agonist | 8.1 | pEC50 |
| SCH50911 | Antagonist | 6.4 | pIC50 |
| 3-APPA | Agonist | 5.6 | pIC50 |
| CGP 47656 | Full agonist | 5.0 | pIC50 |
| CGP35348 | Antagonist | 4.8 | pIC50 |
| (-)-baclofen | Full agonist | 4.6 | pIC50 |
| GABA | Full agonist | 4.6 | pIC50 |
| 2-hydroxy-saclofen | Antagonist | 4.1 | pIC50 |
| saclofen | Antagonist | 3.5 | pIC50 |
Binding affinities (BindingDB)
4 measured of 9 human assays (9 total across all organisms); most potent 4 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL237582 | EC50 | 2750 nM |
| CHEMBL401437 | EC50 | 3470 nM |
| CHEMBL2322934 | EC50 | 37800 nM |
| CHEMBL2322935 | EC50 | 40000 nM |
ChEMBL bioactivities
71 potent at pChembl≥5 of 89 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.70 | IC50 | 0.2 | nM | CHEMBL4763515 |
| 9.00 | Kd | 1 | nM | CHEMBL1628548 |
| 8.92 | IC50 | 1.2 | nM | CHEMBL4791366 |
| 8.62 | IC50 | 2.4 | nM | CHEMBL4756657 |
| 8.62 | IC50 | 2.4 | nM | CHEMBL112203 |
| 8.54 | Ki | 2.9 | nM | CHEMBL2391908 |
| 8.31 | IC50 | 4.9 | nM | CHEMBL4787614 |
| 8.19 | IC50 | 6.4 | nM | CHEMBL2391908 |
| 8.18 | IC50 | 6.6 | nM | CHEMBL112710 |
| 8.07 | EC50 | 8.6 | nM | CHEMBL3600560 |
| 7.89 | IC50 | 13 | nM | CHEMBL4847170 |
| 7.82 | IC50 | 15 | nM | ARBACLOFEN |
| 7.75 | IC50 | 18 | nM | CHEMBL113453 |
| 7.73 | IC50 | 18.6 | nM | CHEMBL4745449 |
| 7.72 | IC50 | 18.9 | nM | CHEMBL4762233 |
| 7.68 | IC50 | 21 | nM | CHEMBL4856595 |
| 7.63 | IC50 | 23.2 | nM | CHEMBL4740566 |
| 7.60 | IC50 | 25 | nM | GAMMA-AMINOBUTYRIC ACID |
| 7.54 | IC50 | 29 | nM | CHEMBL113304 |
| 7.46 | IC50 | 35 | nM | BACLOFEN |
| 7.41 | IC50 | 39 | nM | CHEMBL430501 |
| 7.30 | IC50 | 50 | nM | BACLOFEN |
| 7.19 | EC50 | 64 | nM | CHEMBL5207265 |
| 7.10 | EC50 | 79.43 | nM | GS-39783 |
| 7.05 | EC50 | 90 | nM | CHEMBL5170235 |
| 7.01 | EC50 | 97 | nM | CHEMBL5185974 |
| 6.85 | EC50 | 142 | nM | CHEMBL5204436 |
| 6.78 | IC50 | 166 | nM | CHEMBL113396 |
| 6.70 | IC50 | 200 | nM | CHEMBL312675 |
| 6.70 | EC50 | 199 | nM | CHEMBL5169533 |
| 6.70 | EC50 | 200 | nM | CHEMBL112710 |
| 6.68 | EC50 | 208 | nM | CHEMBL5183971 |
| 6.55 | IC50 | 280 | nM | CHEMBL113217 |
| 6.53 | EC50 | 294 | nM | CHEMBL5187574 |
| 6.47 | EC50 | 341 | nM | CHEMBL5193733 |
| 6.44 | IC50 | 360 | nM | CHEMBL111378 |
| 6.38 | EC50 | 419 | nM | CHEMBL5188066 |
| 6.35 | EC50 | 444 | nM | CHEMBL5202253 |
| 6.30 | EC50 | 496 | nM | CHEMBL5186902 |
| 6.30 | IC50 | 500 | nM | CHEMBL113907 |
| 6.28 | EC50 | 530 | nM | GAMMA-AMINOBUTYRIC ACID |
| 6.21 | IC50 | 610 | nM | 4-AMINO-3- (5-CHLOROTHIEN-2-YL)BUTANOIC ACID |
| 6.20 | EC50 | 637 | nM | CHEMBL5209256 |
| 6.13 | EC50 | 741.3 | nM | GS-39783 |
| 6.12 | EC50 | 764 | nM | CHEMBL2346820 |
| 6.11 | EC50 | 771 | nM | CHEMBL5209395 |
| 6.11 | IC50 | 780 | nM | CHEMBL111920 |
| 6.06 | IC50 | 880 | nM | CHEMBL109752 |
| 6.06 | EC50 | 871 | nM | CHEMBL393066 |
| 6.04 | IC50 | 920 | nM | CHEMBL111675 |
PubChem BioAssay actives
67 with measured affinity, of 439 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (4S)-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-benzamidoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0002 | uM |
| 3-(1R)-1-[[(2S)-3-[5-[(4-azido-2-hydroxy-5-(125I)iodobenzoyl)amino]pentyl-hydroxyphosphoryl]-2-hydroxypropyl]amino]ethylbenzoic acid | 1237980: Binding affinity to GABA-B receptor (unknown origin) | kd | 0.0010 | uM |
| (4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-benzamidoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-4-oxobutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0012 | uM |
| (4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-4-oxobutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0024 | uM |
| 3-aminopropyl-hydroxy-oxophosphanium | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0024 | uM |
| cyclohexylmethyl-[(2S)-3-[[(1S)-1-(3,4-dichlorophenyl)ethyl]amino]-2-hydroxypropyl]phosphinic acid;hydrochloride | 751678: Displacement of [3H]CGP54626 from human recombinant GABAB1A receptor expressed in CHO cells after 3 hrs | ki | 0.0029 | uM |
| (4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0049 | uM |
| 3-aminopropyl(methyl)phosphinic acid | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0066 | uM |
| [(2R)-3-amino-2-fluoropropyl]phosphonic acid | 1237985: Agonist activity at human recombinant GABA-B receptor | ec50 | 0.0086 | uM |
| 3-[(1S,6R,9S,12S,15S,21S,24S,27S,30S,33S,36S,39S,45S,48S,53R)-53-[(2-aminoacetyl)amino]-30-(2-amino-2-oxoethyl)-9-[(2S)-butan-2-yl]-36-(3-carbamimidamidopropyl)-6-carbamoyl-24,45-bis(carboxymethyl)-48-(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-21-(1H-imidazol-5-ylmethyl)-8,11,14,20,23,26,29,32,35,38,44,47,50,52-tetradecaoxo-3,4-dithia-7,10,13,19,22,25,28,31,34,37,43,46,49,51-tetradecazatetracyclo[31.17.7.015,19.039,43]heptapentacont-55-yn-12-yl]propanoic acid | 1762195: Agonist activity at human GABAB expressed in HEK293T cells co-transfected with human CaV2.2 channel assessed as inhibition of CaV2.2-mediated Ba2+ peak-current amplitude at -80 to 10 mV holding potential after 72 hrs by whole cell patch clamp assay | ic50 | 0.0130 | uM |
| (3R)-4-amino-3-(4-chlorophenyl)butanoic acid | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0150 | uM |
| (3-amino-2-hydroxypropyl)-hydroxy-oxophosphanium | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0180 | uM |
| (4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-hydroxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0186 | uM |
| (4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-acetamidoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0189 | uM |
| 3-[(1R,4S,7S,10S,13S,19S,22S,25S,28R,33R,36R,39S,42S,48S,51S)-33-[(2-aminoacetyl)amino]-4-(2-amino-2-oxoethyl)-25-[(2S)-butan-2-yl]-51-(3-carbamimidamidopropyl)-28-carbamoyl-10,42-bis(carboxymethyl)-39-(hydroxymethyl)-7-[(4-hydroxyphenyl)methyl]-13-(1H-imidazol-5-ylmethyl)-2,5,8,11,14,20,23,26,34,37,40,43,49,52-tetradecaoxo-30,31,55,56-tetrathia-3,6,9,12,15,21,24,27,35,38,41,44,50,53-tetradecazatetracyclo[34.17.4.015,19.044,48]heptapentacontan-22-yl]propanoic acid | 1762195: Agonist activity at human GABAB expressed in HEK293T cells co-transfected with human CaV2.2 channel assessed as inhibition of CaV2.2-mediated Ba2+ peak-current amplitude at -80 to 10 mV holding potential after 72 hrs by whole cell patch clamp assay | ic50 | 0.0210 | uM |
| (4S)-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-amino-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-oxopentanoic acid | 1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assay | ic50 | 0.0232 | uM |
| .gamma.-aminobutyric acid | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0250 | uM |
| (3-amino-2-hydroxypropyl)-methylphosphinic acid | 71256: Inhibition of [3H]CGP-27492 binding to cat Gamma-aminobutyric acid type B receptor | ic50 | 0.0290 | uM |
| Baclofen | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0350 | uM |
| [3-amino-2-(4-chlorophenyl)propyl]-hydroxy-oxophosphanium | 71257: Inhibition of [3H]baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.0390 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(3,5-dichlorophenyl)quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.0640 | uM |
| 4-N,6-N-dicyclopentyl-2-methylsulfanyl-5-nitropyrimidine-4,6-diamine | 1474762: Positive allosteric modulation at human GABA-B 1b expressed in CHO cells co-expressing rat GABA-B2 assessed as potentiation of GABA-induced inhibition of 7beta forskolin-stimulated cyclic AMP formation after 2 hrs in presence of 0.3 uM GABA relative to 100 uM GABA alone | ec50 | 0.0794 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-[3-(trifluoromethyl)phenyl]quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.0900 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(3,5-dichlorophenyl)-2-methylquinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.0970 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-methyl-6-[3-(trifluoromethyl)phenyl]quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.1420 | uM |
| 4-aminobutan-2-yl(methyl)phosphinic acid | 71256: Inhibition of [3H]CGP-27492 binding to cat Gamma-aminobutyric acid type B receptor | ic50 | 0.1660 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(3-chlorophenyl)-2-methylquinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.1990 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(4-chlorophenyl)quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.2080 | uM |
| [(E)-3-aminoprop-1-enyl]-hydroxy-oxophosphanium | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.2800 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(4-fluorophenyl)quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.2940 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(3,4-dichlorophenyl)quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.3410 | uM |
| [3-amino-2-(4-fluorophenyl)propyl]-hydroxy-oxophosphanium | 71257: Inhibition of [3H]baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.3600 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(3,4-dichlorophenyl)-2-methylquinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.4190 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(4-chlorophenyl)-2-methylquinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.4440 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(2-chlorophenyl)-2-methylquinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.4960 | uM |
| 3-aminobutyl-hydroxy-oxophosphanium | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.5000 | uM |
| 4-amino-3-(5-chlorothiophen-2-yl)butanoic acid | 1237980: Binding affinity to GABA-B receptor (unknown origin) | ic50 | 0.6100 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-[4-(trifluoromethyl)phenyl]quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.6370 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.7640 | uM |
| N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-methyl-6-[4-(trifluoromethyl)phenyl]quinazolin-4-amine | 1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assay | ec50 | 0.7710 | uM |
| (3-amino-2-methylpropyl)-hydroxy-oxophosphanium | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.7800 | uM |
| N-cyclohexyl-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine | 301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S binding | ec50 | 0.8710 | uM |
| (3-amino-2-phenylpropyl)-hydroxy-oxophosphanium | 71257: Inhibition of [3H]baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.8800 | uM |
| 4-aminobutan-2-yl-hydroxy-oxophosphanium | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 0.9200 | uM |
| 4-[[(1S,2R,4R)-2-bicyclo[2.2.1]heptanyl]amino]-5-[4-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile | 301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S binding | ec50 | 1.2023 | uM |
| 3-aminopropyl(ethyl)phosphinic acid | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 1.3500 | uM |
| N-[(1S,2R,4R)-2-bicyclo[2.2.1]heptanyl]-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine | 301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S binding | ec50 | 1.6596 | uM |
| N-cycloheptyl-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine | 301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S binding | ec50 | 1.6596 | uM |
| 4-N-[(1S,2R,4R)-2-bicyclo[2.2.1]heptanyl]-2-N,2-N-dimethyl-5-[4-(trifluoromethyl)phenyl]pyrimidine-2,4-diamine | 301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S binding | ec50 | 1.6596 | uM |
| (3S)-4-amino-3-(4-chlorophenyl)butanoic acid | 71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellum | ic50 | 1.7700 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| gamma-Aminobutyric Acid | affects binding, increases activity, increases reaction, decreases reaction | 3 |
| Valproic Acid | affects expression, increases expression | 3 |
| sodium arsenite | decreases expression, increases abundance, increases expression | 2 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Arsenic | increases expression, affects methylation, increases abundance | 2 |
| Ozone | affects cotreatment, increases expression, increases abundance | 2 |
| Phenylmercuric Acetate | increases expression, affects cotreatment | 2 |
| Cadmium Chloride | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| 3-aminopropylphosphinic acid | increases activity, increases reaction, affects binding | 1 |
| tribromoethanol | increases activity, increases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 55845A | decreases activity, affects binding, decreases reaction, increases activity, increases reaction | 1 |
| CGP 71872 | affects binding, decreases reaction, increases activity | 1 |
| 4-chloro-N-((4-(1,1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide | decreases expression | 1 |
| 2,6-di-tert-butyl-4-(3-hydroxy-2,2-dimethylpropyl)phenol | increases reaction, decreases reaction, affects binding, increases activity | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | increases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sevoflurane | decreases reaction, increases activity | 1 |
| Gabapentin | decreases reaction, increases activity, affects binding | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation, increases methylation | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression | 1 |
ChEMBL screening assays
94 unique, capped per target: 71 binding, 22 functional, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2167243 | Binding | Inhibition of human GABAB1A receptor at 10 uM by radioligand displacement assay | ADME-guided design and synthesis of aryloxanyl pyrazolone derivatives to block mutant superoxide dismutase 1 (SOD1) cytotoxicity and protein aggregation: potential application for the treatment of amyotrophic lateral sclerosis. — J Med Chem |
| CHEMBL964516 | Functional | Agonist activity at human GABAb 1A/2 receptor expressed in Xenopus oocytes assessed as whole cell current production by two electrode voltage clamp method | Novel gamma-aminobutyric acid rho1 receptor antagonists; synthesis, pharmacological activity and structure-activity relationships. — J Med Chem |
| CHEMBL4810231 | ADMET | Inhibition of GABA-B receptor (unknown origin) at 0.1 to 1 uM | Discovery of Pemigatinib: A Potent and Selective Fibroblast Growth Factor Receptor (FGFR) Inhibitor. — J Med Chem |
Cellosaurus cell lines
9 cell lines: 6 cancer cell line, 2 spontaneously immortalized cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1SM | Abcam U-87MG GABBR1 KO | Cancer cell line | Male |
| CVCL_D7QF | Ubigene A-549 GABBR1 KO | Cancer cell line | Male |
| CVCL_D8LR | Ubigene HCT 116 GABBR1 KO | Cancer cell line | Male |
| CVCL_D9FA | Ubigene HEK293 GABBR1 KO | Transformed cell line | Female |
| CVCL_E0DL | Ubigene HeLa GABBR1 KO | Cancer cell line | Female |
| CVCL_KV19 | cAMP Hunter CHO-K1 GABBR1-GABBR2 Gi | Spontaneously immortalized cell line | Female |
| CVCL_LC01 | CHO-K1 h-GABA-b R1a/R2 | Spontaneously immortalized cell line | Female |
| CVCL_SP41 | HAP1 GABBR1 (-) 1 | Cancer cell line | Male |
| CVCL_SP42 | HAP1 GABBR1 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
197 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
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| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
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| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
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| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
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| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
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| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
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Related Atlas pages
- Associated diseases: neurodevelopmental disorder with language delay and variable cognitive abnormalities
- Targeted by drugs: Arbaclofen
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): nasopharyngeal neoplasm, neurodevelopmental disorder with language delay and variable cognitive abnormalities, neurofibromatosis type 1, nicotine dependence