GABBR2

gene
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Also known as HG20GABABR2GPRC3B

Summary

GABBR2 (gamma-aminobutyric acid type B receptor subunit 2, HGNC:4507) is a protein-coding gene on chromosome 9q22.33, encoding Gamma-aminobutyric acid type B receptor subunit 2 (O75899). Component of a heterodimeric G-protein coupled receptor for GABA, formed by GABBR1 and GABBR2.

The multi-pass membrane protein encoded by this gene belongs to the G-protein coupled receptor 3 family and GABA-B receptor subfamily. The GABA-B receptors inhibit neuronal activity through G protein-coupled second-messenger systems, which regulate the release of neurotransmitters, and the activity of ion channels and adenylyl cyclase. This receptor subunit forms an active heterodimeric complex with GABA-B receptor subunit 1, neither of which is effective on its own. Allelic variants of this gene have been associated with nicotine dependence.

Source: NCBI Gene 9568 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): neurodevelopmental disorder with poor language and loss of hand skills (Strong, GenCC) — +3 more curated relationships
  • GWAS associations: 12
  • Clinical variants (ClinVar): 1,152 total — 4 pathogenic, 8 likely-pathogenic
  • Phenotypes (HPO): 114
  • Druggable target: yes — 4 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_005458

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:4507
Approved symbolGABBR2
Namegamma-aminobutyric acid type B receptor subunit 2
Location9q22.33
Locus typegene with protein product
StatusApproved
AliasesHG20, GABABR2, GPRC3B
Ensembl geneENSG00000136928
Ensembl biotypeprotein_coding
OMIM607340
Entrez9568

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 7 protein_coding_CDS_not_defined, 5 protein_coding, 2 retained_intron

ENST00000259455, ENST00000477471, ENST00000634227, ENST00000634314, ENST00000634354, ENST00000634457, ENST00000634919, ENST00000635462, ENST00000636575, ENST00000637410, ENST00000637717, ENST00000638001, ENST00000931526, ENST00000947376

RefSeq mRNA: 1 — MANE Select: NM_005458 NM_005458

CCDS: CCDS6736

Canonical transcript exons

ENST00000259455 — 19 exons

ExonStartEnd
ENSE000009265189840608198406141
ENSE000009831839839417598394255
ENSE000009831849838885498389004
ENSE000009831859838564098385772
ENSE000009831869837146498371571
ENSE000009831879836271598362837
ENSE000009831889831109598311205
ENSE000009831899830612198306345
ENSE000009831909830324198303423
ENSE000009831919829922498299353
ENSE000009831929829378598293902
ENSE000010228379857793598578072
ENSE000010382349845398198454217
ENSE000010382469847314698473346
ENSE000011852219828810998290749
ENSE000012633359870841798708935
ENSE000034832649849641398496514
ENSE000035396429854187398542043
ENSE000036381899848093298480997

Expression profiles

Bgee: expression breadth ubiquitous, 193 present calls, max score 99.72.

FANTOM5 (CAGE): breadth broad, TPM avg 3.9201 / max 173.9651, expressed in 367 samples.

FANTOM5 promoters (13 alternative TSS)

Promoter IDTPM avgSamples expressed
1016912.6872257
1016980.3870105
1016920.213977
1016940.180693
1016930.087444
1016960.063129
1016900.057135
1016970.055327
1016820.047920
1016950.044928

Top tissues by expression

277 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
Brodmann (1909) area 23UBERON:001355499.72gold quality
lateral nuclear group of thalamusUBERON:000273699.71gold quality
middle temporal gyrusUBERON:000277199.60gold quality
endothelial cellCL:000011598.97gold quality
superior frontal gyrusUBERON:000266198.92gold quality
Brodmann (1909) area 46UBERON:000648398.80gold quality
Brodmann (1909) area 10UBERON:001354198.70gold quality
orbitofrontal cortexUBERON:000416798.68gold quality
parietal lobeUBERON:000187298.57gold quality
postcentral gyrusUBERON:000258198.55gold quality
frontal poleUBERON:000279598.43gold quality
CA1 field of hippocampusUBERON:000388198.43gold quality
primary visual cortexUBERON:000243698.23gold quality
occipital lobeUBERON:000202198.15gold quality
entorhinal cortexUBERON:000272898.01gold quality
cerebellar vermisUBERON:000472097.48gold quality
ponsUBERON:000098897.10gold quality
substantia nigra pars compactaUBERON:000196596.86gold quality
substantia nigra pars reticulataUBERON:000196695.95gold quality
frontal cortexUBERON:000187095.90gold quality
frontal lobeUBERON:001652595.90gold quality
dorsolateral prefrontal cortexUBERON:000983495.48gold quality
paraflocculusUBERON:000535195.37gold quality
prefrontal cortexUBERON:000045195.34gold quality
neocortexUBERON:000195095.05gold quality
Brodmann (1909) area 9UBERON:001354094.82gold quality
cerebral cortexUBERON:000095694.79gold quality
cortical plateUBERON:000534394.64gold quality
adult organismUBERON:000702394.34gold quality
right frontal lobeUBERON:000281094.06gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-HCAD-25yes35.34
E-ANND-3yes5.36

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

241 targeting GABBR2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-6867-5P100.0082.213464
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-9-5P100.0072.282361
HSA-MIR-3163100.0077.238605
HSA-MIR-4283100.0066.422097
HSA-MIR-7110-3P100.0073.182486
HSA-MIR-3924100.0072.092394
HSA-MIR-450099.9972.722367
HSA-MIR-371A-3P99.9966.7791
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-453199.9969.703181
HSA-LET-7A-5P99.9872.291790
HSA-LET-7B-5P99.9872.311790
HSA-LET-7C-5P99.9872.291790
HSA-LET-7E-5P99.9872.291790
HSA-LET-7F-5P99.9872.561784
HSA-LET-7G-5P99.9872.371784
HSA-LET-7I-5P99.9872.371788
HSA-MIR-98-5P99.9872.331787
HSA-MIR-4650-5P99.9864.69999
HSA-MIR-50799.9770.111915
HSA-MIR-314899.9775.066478
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-LET-7D-5P99.9671.761632
HSA-MIR-445899.9671.641650
HSA-MIR-568899.9673.234504
HSA-MIR-495-3P99.9672.814197

Literature-anchored findings (GeneRIF, showing 33)

  • Increased expression of GABA(B) receptor subtype 2 indicates augmented presynaptic inhibition of glutamate release as a possible protective mechanism in temporal lobe epilepsy. (PMID:14625043)
  • GABA(B) receptor subunit GABA(B)R2 is found on the same neurons and follows the same distribution patterns in the basal ganglia as the GABABR1 receptor subunit. (PMID:14961561)
  • Association of the GABA(B)R1 with the GABA(A) receptor gamma2S subunit robustly promotes cell surface expression of GABA(B)R1 in the absence of GABA(B)R2, that is usually required for efficient trafficking of GABA(B)R1 to the cell surface. (PMID:14966130)
  • The GABA(B) receptor may be present as a heterodimer with subunits of GABA(B1) and GABA(B2) in the human colon. (PMID:14978362)
  • Functional GABA(B) receptors are expressed in human airway smooth muscle cells (PMID:16829628)
  • GABA(B) receptor stability and signaling can be modulated via GABA(B) receptor subunit 2 interactions with the PDZ scaffold protein Mupp1, which may contribute to cell-specific regulation of GABA(B) receptors in the central nervous system. (PMID:17145756)
  • Levels of GABBR1 are significantly decreased in the cerebellum of patients with autism. (PMID:19002745)
  • variants of GABBR1 and GABBR2 are associated with nicotine dependence in European- and African-American populations (PMID:19763258)
  • GABA(B) receptor subunit 2 levels are significantly decreased in the cingulate cortex and fusiform gyrus of autism patients compared to controls. (PMID:20557420)
  • The results of this study provided evidence of Gabbr2 Deficit in schizophrenia and mood disorders. (PMID:21303731)
  • Gamma-aminobutyric acid type B (GABA(B)) receptor internalization is regulated by the R2 subunit. (PMID:21724853)
  • The results indicate that there may be specific GABA receptor gene expression variation in migraine, particularly involving the GABRA3 and GABBR2 genes. (PMID:21971078)
  • and GABABR2 proteins are reduced in the prefrontal cortex of aged rats but these reductions are not associated with spatial learning abilities. (PMID:22169202)
  • Results show that GABA(B) receptors R1 and R2 must be activated for the modulation of N-type (Ca(v)2.2) calcium channels by analgesic alpha-conotoxins Vc1.1 and RgIA. (PMID:22613715)
  • The GABBR2 ectodomain adopts a constitutively open conformation, suggesting a structural asymmetry in the active state of GABA(B) receptor that is unique to the GABAergic system. (PMID:22660477)
  • gamma-aminobutyric acidB receptor proteasomal degradation is mediated by the interaction of the GABAB2 C terminus with the proteasomal ATPase Rtp6 and regulated by neuronal activity (PMID:24482233)
  • GABBR2 receptors are expressed in aortic smooth muscle cells and regulate the [Ca(2+)]i via a Gi/o-coupled receptor pathway and a phospholipase C activation pathway. (PMID:24682435)
  • The endoplasmic reticulum retention signal of GBR1 is not part of the core coiled-coil structure, suggesting that it is sterically shielded by GBR2 upon heterodimer formation. (PMID:24778228)
  • Putative GABAA and ASIC1a channels functionally interact with each other, possibly via an inter-molecular association by forming a novel protein complex. (PMID:24923912)
  • The rare variants in GABBR2 were significantly associated with smoking status. (PMID:25450229)
  • a GABBR2 variant, predicted to be disease-causative, was significantly associated with corticospinal excitability at corrected levels. A subsequent uncorrected exploratory analysis revealed associations between GABBR2, GABRA2 and DRD2 variants with transcranial magnetic stimulation measures of corticospinal excitability and cortical inhibition in Huntington’s disease, as well as with age at onset. (PMID:27033668)
  • There was no statistically significant association for the two SNPs of the GABBR1 gene (rs29230 and rs29267). However, a significant difference between AUD individuals and controls was observed at genotype level for rs2900512 of GABBR2 gene. (PMID:28118741)
  • Using a ligand-guided approach, eight GABAB2 homology models have been chosen as possible structural representatives of the transmembrane domain of the GABAB2 subunit. (PMID:28323850)
  • We demonstrated that GABBR2 gene might be a novel potential epigenetic treatment target with induction erlotinib treatment for stage IIIa (N2) EGFR 19 deletion lung adenocarcinoma (PMID:28490462)
  • GABBR2 is a genetic factor that determines Rett syndrome- or epileptic encephalopathy-like phenotype expression depending on the variant positions. GABBR2-mediated gamma-aminobutyric acid signaling is a crucial factor in determining the severity and nature of neurodevelopmental phenotypes. (PMID:28856709)
  • Missense Mutation in GABBR2 gene is associated with Neurodevelopmental Disorders. (PMID:28867141)
  • GABA B receptor expression in myometrium (PMID:30343129)
  • Structural basis of the activation of a metabotropic GABA receptor. (PMID:32555460)
  • Structures of metabotropic GABAB receptor. (PMID:32580208)
  • Structure of human GABAB receptor in an inactive state. (PMID:32581365)
  • Structural Basis for Activation of the Heterodimeric GABAB Receptor. (PMID:33058878)
  • A preliminary genetic association study of GAD1 and GABAB receptor genes in patients with treatment-resistant schizophrenia. (PMID:34845648)
  • GABBR2 as a Downstream Effector of the Androgen Receptor Induces Cisplatin Resistance in Bladder Cancer. (PMID:37762034)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_reriogabbr2ENSDARG00000061042
danio_rerioENSDARG00000111795
mus_musculusGabbr2ENSMUSG00000039809
rattus_norvegicusGabbr2ENSRNOG00000008431
drosophila_melanogasterGABA-B-R2FBGN0027575
caenorhabditis_elegansWBGENE00022675

Paralogs (2): GPR156 (ENSG00000175697), GABBR1 (ENSG00000204681)

Protein

Protein identifiers

Gamma-aminobutyric acid type B receptor subunit 2O75899 (reviewed: O75899)

Alternative names: G-protein coupled receptor 51, HG20

All UniProt accessions (4): A0A0U1RR59, A0A1B0GW60, O75899, H9NIL8

UniProt curated annotations — full annotation on UniProt →

Function. Component of a heterodimeric G-protein coupled receptor for GABA, formed by GABBR1 and GABBR2. Within the heterodimeric GABA receptor, only GABBR1 seems to bind agonists, while GABBR2 mediates coupling to G proteins. Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of down-stream effectors, such as adenylate cyclase. Signaling inhibits adenylate cyclase, stimulates phospholipase A2, activates potassium channels, inactivates voltage-dependent calcium-channels and modulates inositol phospholipid hydrolysis. Plays a critical role in the fine-tuning of inhibitory synaptic transmission. Pre-synaptic GABA receptor inhibits neurotransmitter release by down-regulating high-voltage activated calcium channels, whereas postsynaptic GABA receptor decreases neuronal excitability by activating a prominent inwardly rectifying potassium (Kir) conductance that underlies the late inhibitory postsynaptic potentials. Not only implicated in synaptic inhibition but also in hippocampal long-term potentiation, slow wave sleep, muscle relaxation and antinociception.

Subunit / interactions. Heterodimer of GABBR1 and GABBR2. Homodimers may form, but are inactive. Interacts (via C-terminus) with ATF4 (via leucine zipper domain).

Subcellular location. Cell membrane. Postsynaptic cell membrane.

Tissue specificity. Highly expressed in brain, especially in cerebral cortex, thalamus, hippocampus, frontal, occipital and temporal lobe, occipital pole and cerebellum, followed by corpus callosum, caudate nucleus, spinal cord, amygdala and medulla. Weakly expressed in heart, testis and skeletal muscle.

Disease relevance. Neurodevelopmental disorder with poor language and loss of hand skills (NDPLHS) [MIM:617903] An autosomal dominant disorder characterized by psychomotor developmental stagnation or regression. NDPLHS manifest in the first years of life as loss of purposeful hand movements, loss of language, and intellectual disability. The disease is caused by variants affecting the gene represented in this entry. Developmental and epileptic encephalopathy 59 (DEE59) [MIM:617904] A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE59 is an autosomal dominant condition characterized by onset of refractory seizures in early infancy. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. Alpha-helical parts of the C-terminal intracellular region mediate heterodimeric interaction with GABBR1.

Similarity. Belongs to the G-protein coupled receptor 3 family. GABA-B receptor subfamily.

RefSeq proteins (1): NP_005449* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000337GPCR_3Family
IPR001828ANF_lig-bd_rcptDomain
IPR002455GPCR3_GABA-BFamily
IPR002457GPCR_3_GABA_rcpt_B2Family
IPR017978GPCR_3_CDomain
IPR017979GPCR_3_CSConserved_site
IPR028082Peripla_BP_IHomologous_superfamily
IPR041689GBR2_CCDomain

Pfam: PF00003, PF01094, PF18455

UniProt features (115 total): helix 28, strand 25, turn 12, modified residue 9, topological domain 8, sequence variant 8, transmembrane region 7, glycosylation site 5, sequence conflict 4, disulfide bond 3, signal peptide 1, chain 1, region of interest 1, coiled-coil region 1, compositionally biased region 1, mutagenesis site 1

Structure

Experimental structures (PDB)

26 structures.

PDBMethodResolution (Å)
4PASX-RAY DIFFRACTION1.62
4MS4X-RAY DIFFRACTION1.9
4MR7X-RAY DIFFRACTION2.15
4MR8X-RAY DIFFRACTION2.15
4MQFX-RAY DIFFRACTION2.22
4MS1X-RAY DIFFRACTION2.25
4MQEX-RAY DIFFRACTION2.35
4MR9X-RAY DIFFRACTION2.35
6OCPX-RAY DIFFRACTION2.35
4F11X-RAY DIFFRACTION2.38
4MS3X-RAY DIFFRACTION2.5
4MRMX-RAY DIFFRACTION2.86
7C7SELECTRON MICROSCOPY2.9
7C7QELECTRON MICROSCOPY3
4F12X-RAY DIFFRACTION3.02
6M8RX-RAY DIFFRACTION3.2
6WIVELECTRON MICROSCOPY3.3
7EB2ELECTRON MICROSCOPY3.5
7CUMELECTRON MICROSCOPY3.52
6W2XELECTRON MICROSCOPY3.6
6UO8ELECTRON MICROSCOPY3.63
6VJMELECTRON MICROSCOPY3.97
7CA3ELECTRON MICROSCOPY4.5
6UO9ELECTRON MICROSCOPY4.8
6UOAELECTRON MICROSCOPY6.3
7CA5ELECTRON MICROSCOPY7.6

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O75899-F178.000.46

Antibody-complex structures (SAbDab): 17EB2

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (9): 776, 779, 819, 884, 893, 913, 916, 920, 924

Disulfide bonds (3): 108–135, 237–266, 265–302

Glycosylation sites (5): 90, 298, 389, 404, 453

Mutagenesis-validated functional residues (1):

PositionPhenotype
118impairs interaction with gabbr1. decreases signaling via g-proteins.

Function

Pathways and Gene Ontology

Reactome pathways

5 pathways

IDPathway
R-HSA-1296041Activation of G protein gated Potassium channels
R-HSA-418594G alpha (i) signalling events
R-HSA-420499Class C/3 (Metabotropic glutamate/pheromone receptors)
R-HSA-977444GABA B receptor activation
R-HSA-997272Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits

MSigDB gene sets: 416 (showing top): GNF2_RTN1, MULLIGHAN_NPM1_SIGNATURE_3_UP, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, BENPORATH_ES_WITH_H3K27ME3, TGCACTT_MIR519C_MIR519B_MIR519A, REACTOME_POTASSIUM_CHANNELS, REACTOME_INWARDLY_RECTIFYING_K_CHANNELS, PEREZ_TP63_TARGETS, GOBP_GAMMA_AMINOBUTYRIC_ACID_SIGNALING_PATHWAY, TGACCTY_ERR1_Q2, AP2_Q3, ACTGCAG_MIR173P, GGGTGGRR_PAX4_03, TANG_SENESCENCE_TP53_TARGETS_UP, GOBP_CELL_CELL_SIGNALING

GO Biological Process (8): G protein-coupled receptor signaling pathway (GO:0007186), adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (GO:0007193), negative regulation of adenylate cyclase activity (GO:0007194), gamma-aminobutyric acid signaling pathway (GO:0007214), chemical synaptic transmission (GO:0007268), synaptic transmission, GABAergic (GO:0051932), neuron-glial cell signaling (GO:0150099), signal transduction (GO:0007165)

GO Molecular Function (6): transmembrane signaling receptor activity (GO:0004888), G protein-coupled GABA receptor activity (GO:0004965), protein heterodimerization activity (GO:0046982), G protein-coupled receptor activity (GO:0004930), protein binding (GO:0005515), GABA receptor activity (GO:0016917)

GO Cellular Component (9): cytoplasm (GO:0005737), plasma membrane (GO:0005886), G protein-coupled receptor heterodimeric complex (GO:0038039), neuron projection (GO:0043005), postsynaptic membrane (GO:0045211), GABA receptor complex (GO:1902710), G protein-coupled GABA receptor complex (GO:1902712), membrane (GO:0016020), synapse (GO:0045202)

Reactome top-level categories

Rollup of top-5 pathways:

CategoryPathways
G protein gated Potassium channels1
GPCR downstream signalling1
GPCR ligand binding1
GABA receptor activation1
Activation of GABAB receptors1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
G protein-coupled receptor activity2
cell-cell signaling2
GABA receptor activity2
transmembrane signaling receptor activity2
cellular anatomical structure2
G protein-coupled receptor dimeric complex2
signal transduction1
adenylate cyclase-modulating G protein-coupled receptor signaling pathway1
adenylate cyclase inhibitor activity1
adenylate cyclase activity1
negative regulation of catalytic activity1
regulation of adenylate cyclase activity1
anterograde trans-synaptic signaling1
chemical synaptic transmission1
cell communication1
cellular process1
signaling1
regulation of cellular process1
cellular response to stimulus1
signaling receptor activity1
protein dimerization activity1
G protein-coupled receptor signaling pathway1
binding1
intracellular anatomical structure1
membrane1
cell periphery1
plasma membrane bounded cell projection1
synaptic membrane1
postsynapse1
signaling receptor complex1
GABA receptor complex1
cell junction1

Protein interactions and networks

STRING

1914 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
GABBR2GABBR1Q9UBS5985
GABBR2CHRNA2Q15822768
GABBR2JAKMIP1Q96N16744
GABBR2GABRB3P28472724
GABBR2A4GALTQ9NPC4718
GABBR2GRIN2BQ13224699
GABBR2SLC17A6Q9P2U8684
GABBR2CHRNA4P43681681
GABBR2SLC17A7Q9P2U7680
GABBR2CHRNB2P17787662
GABBR2CHRNA5P30532660
GABBR2GTPBP4Q9BZE4643
GABBR2KCNJ6P48051592
GABBR2DRD2P14416586
GABBR2GABRA1P14867586

IntAct

32 interactions, top by confidence:

ABTypeScore
GABBR1GABBR2psi-mi:“MI:0407”(direct interaction)0.790
GABBR2GABBR1psi-mi:“MI:0407”(direct interaction)0.790
GABBR2GABBR1psi-mi:“MI:0407”(direct interaction)0.740
GABBR1GABBR2psi-mi:“MI:0915”(physical association)0.740
KCTD16GABBR2psi-mi:“MI:0407”(direct interaction)0.640
GABBR2KCTD16psi-mi:“MI:0407”(direct interaction)0.640
GABBR2NSFpsi-mi:“MI:0915”(physical association)0.610
NSFGABBR2psi-mi:“MI:0407”(direct interaction)0.610
NSFGABBR2psi-mi:“MI:0403”(colocalization)0.610
GABBR2GNG2psi-mi:“MI:0915”(physical association)0.520
GABBR2GLP1Rpsi-mi:“MI:0915”(physical association)0.510
GLP1RGABBR2psi-mi:“MI:0915”(physical association)0.510
GABBR2RIMS1psi-mi:“MI:0915”(physical association)0.500
Dlg4GABBR2psi-mi:“MI:0407”(direct interaction)0.440
GABBR2RNF170psi-mi:“MI:0915”(physical association)0.400
GABBR2DRD2psi-mi:“MI:0915”(physical association)0.370
RIMS1KIF2Apsi-mi:“MI:0914”(association)0.350
RADXDNAJA2psi-mi:“MI:0914”(association)0.350
Cacna1dGABBR2psi-mi:“MI:0403”(colocalization)0.270
CERS2GABBR2psi-mi:“MI:0915”(physical association)0.000

BioGRID (34): GABBR2 (Affinity Capture-Western), AKT1 (Affinity Capture-Western), GABBR2 (Affinity Capture-Western), GABBR2 (Two-hybrid), DDIT3 (Affinity Capture-Western), DDIT3 (Co-localization), SH3GL3 (Two-hybrid), GABBR2 (Co-crystal Structure), GABBR2 (Reconstituted Complex), GABBR2 (Affinity Capture-Western), GABBR2 (Affinity Capture-Western), CASR (Affinity Capture-Western), GABBR2 (Two-hybrid), GABBR2 (Two-hybrid), GABBR2 (Affinity Capture-Western)

ESM2 similar proteins: A0A0G2K1Q8, B2RX12, E9PU17, E9PX95, F1MWM0, O00329, O15438, O35600, O75899, O88563, O88871, O94911, O95477, P41233, P55205, P58428, P78363, Q09427, Q09428, Q09429, Q2NKY8, Q5BJS0, Q5R607, Q5ZI74, Q6TL19, Q7L2E3, Q7TNJ2, Q80T41, Q84M24, Q8CF82, Q8IUA7, Q8K440, Q8K441, Q8K442, Q8K448, Q8K449, Q8LPK0, Q8N139, Q8NCL4, Q8R420

Diamond homologs: G5ECB2, O75899, O88871, Q6PCP7, Q80T41, Q8K451, Q8NFN8, Q9UBS5, Q9WV18, Q9Z0U4, E9Q6I0, O62714, O70410, P35384, P41180, P48442, Q5T6X5, Q6TAC4, Q70VB1, Q8K4Z6, Q9QY96, P23385, P31421, P31422, P31424, P41594, P91685, P97772, Q09630, Q13255, Q14416, Q14832, Q14BI2, Q1ZZH1, Q3UVX5, Q54SW3, Q55AP3, Q5RAL3, Q5U9X3, Q9QYS2

SIGNOR signaling

2 interactions.

AEffectBMechanism
GABBR2“form complex”“GABA-B receptor”binding
PRKACA“down-regulates activity”GABBR2phosphorylation

Disease & clinical

Clinical variants and AI predictions

ClinVar

1152 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic4
Likely pathogenic8
Uncertain significance421
Likely benign511
Benign141

Top pathogenic / likely-pathogenic (12)

Variant IDHGVSClassification
1073462NM_005458.8(GABBR2):c.1700C>T (p.Ala567Val)Pathogenic
496588NM_005458.8(GABBR2):c.2077G>T (p.Gly693Trp)Pathogenic
496589NM_005458.8(GABBR2):c.2084G>T (p.Ser695Ile)Pathogenic
496590NM_005458.8(GABBR2):c.2114T>A (p.Ile705Asn)Pathogenic
1709440NM_005458.8(GABBR2):c.493G>T (p.Asp165Tyr)Likely pathogenic
1718680NM_005458.8(GABBR2):c.1001C>T (p.Thr334Ile)Likely pathogenic
2430201NM_005458.8(GABBR2):c.2072A>G (p.Tyr691Cys)Likely pathogenic
2444365NM_005458.8(GABBR2):c.72_73insACCATGGTTCAGCCACATCTGTCACTTGCCAGTATTGGTACGCATTAAAGTAACTGGTCTGAAACGTTCTATCCAAGAACGCTTGAACTTCCAAGTTACTAATGAAGTAATTCAAC (p.Leu25delinsThrMetValGlnProHisLeuSerLeuAlaSerIleGlyThrHisTer)Likely pathogenic
3376344NM_005458.8(GABBR2):c.2029G>A (p.Glu677Lys)Likely pathogenic
4072293NM_005458.8(GABBR2):c.1723A>T (p.Thr575Ser)Likely pathogenic
981375NM_005458.8(GABBR2):c.2106G>A (p.Met702Ile)Likely pathogenic
985861NM_005458.8(GABBR2):c.635G>A (p.Arg212Gln)Likely pathogenic

SpliceAI

4945 predictions. Top by Δscore:

VariantEffectΔscore
9:98293783:A:ACdonor_gain1.0000
9:98293784:C:CGdonor_gain1.0000
9:98293784:CT:Cdonor_gain1.0000
9:98293784:CTGTT:Cdonor_gain1.0000
9:98293907:A:ACacceptor_gain1.0000
9:98293907:A:Cacceptor_gain1.0000
9:98299220:TTA:Tdonor_loss1.0000
9:98299349:TCCAG:Tacceptor_gain1.0000
9:98299350:CCAG:Cacceptor_gain1.0000
9:98299350:CCAGC:Cacceptor_gain1.0000
9:98299351:CAGC:Cacceptor_gain1.0000
9:98299354:C:CCacceptor_gain1.0000
9:98299354:CTAC:Cacceptor_loss1.0000
9:98303419:ATGAG:Aacceptor_gain1.0000
9:98303420:TGAG:Tacceptor_gain1.0000
9:98303422:AG:Aacceptor_gain1.0000
9:98303423:GCTGA:Gacceptor_loss1.0000
9:98303424:C:CCacceptor_gain1.0000
9:98311089:ACCT:Adonor_loss1.0000
9:98311090:CCTA:Cdonor_loss1.0000
9:98311091:CTACC:Cdonor_loss1.0000
9:98311093:A:ACdonor_gain1.0000
9:98311093:A:Cdonor_loss1.0000
9:98311094:C:CCdonor_gain1.0000
9:98311094:C:CTdonor_loss1.0000
9:98311201:TCCGG:Tacceptor_gain1.0000
9:98311202:CCGG:Cacceptor_gain1.0000
9:98311202:CCGGC:Cacceptor_gain1.0000
9:98311203:CGG:Cacceptor_gain1.0000
9:98311203:CGGC:Cacceptor_gain1.0000

AlphaMissense

6197 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
9:98306130:G:CF740L1.000
9:98306130:G:TF740L1.000
9:98306132:A:GF740L1.000
9:98306137:A:GL738P1.000
9:98306143:A:GL736P1.000
9:98306233:C:TG706E1.000
9:98306234:C:GG706R1.000
9:98306234:C:TG706R1.000
9:98306243:A:GC703R1.000
9:98306252:C:GG700R1.000
9:98306252:C:TG700R1.000
9:98306256:G:CN698K1.000
9:98306256:G:TN698K1.000
9:98306261:A:GY697H1.000
9:98306263:A:TV696D1.000
9:98306265:A:CS695R1.000
9:98306265:A:TS695R1.000
9:98306267:T:GS695R1.000
9:98306272:C:TG693E1.000
9:98306273:C:AG693W1.000
9:98306283:G:CS689R1.000
9:98306283:G:TS689R1.000
9:98306284:C:AS689I1.000
9:98306285:T:GS689R1.000
9:98306287:T:AD688V1.000
9:98306287:T:CD688G1.000
9:98306287:T:GD688A1.000
9:98306288:C:AD688Y1.000
9:98306288:C:GD688H1.000
9:98306288:C:TD688N1.000

dbSNP variants (sampled 300 via entrez): RS1000004572 (9:98298272 C>A), RS1000014648 (9:98369411 G>A), RS1000015451 (9:98477522 G>A), RS1000027981 (9:98433820 G>A), RS1000030191 (9:98642673 T>G), RS1000032127 (9:98610707 T>C), RS1000035142 (9:98323244 A>C), RS1000036274 (9:98516733 C>G,T), RS1000061961 (9:98332035 C>G,T), RS1000062586 (9:98695485 C>A), RS1000063471 (9:98555282 A>G), RS1000064352 (9:98576015 G>A), RS1000070276 (9:98412900 G>A), RS1000086937 (9:98694111 C>A), RS1000105625 (9:98617412 G>A)

Disease associations

OMIM: gene MIM:607340 | disease phenotypes: MIM:617904, MIM:617903, MIM:188890, MIM:312750

GenCC curated gene-disease

DiseaseClassificationInheritance
developmental and epileptic encephalopathy, 59StrongAutosomal dominant
neurodevelopmental disorder with poor language and loss of hand skillsStrongAutosomal dominant
atypical Rett syndromeSupportiveAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
complex neurodevelopmental disorderModerateAD

Mondo (7): developmental and epileptic encephalopathy, 59 (MONDO:0033368), neurodevelopmental disorder with poor language and loss of hand skills (MONDO:0060659), tobacco addiction, susceptibility to (MONDO:0100460), intellectual disability (MONDO:0001071), autism spectrum disorder (MONDO:0005258), Rett syndrome (MONDO:0010726), atypical Rett syndrome (MONDO:0017746)

Orphanet (4): Atypical Rett syndrome (Orphanet:3095), Rett syndrome (Orphanet:778), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), NON RARE IN EUROPE: Autism (Orphanet:106)

HPO phenotypes

114 total (30 of 114 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000252Microcephaly
HP:0000256Macrocephaly
HP:0000348High forehead
HP:0000494Downslanted palpebral fissures
HP:0000504Abnormality of vision
HP:0000508Ptosis
HP:0000546Retinal degeneration
HP:0000639Nystagmus
HP:0000648Optic atrophy
HP:0000668Hypodontia
HP:0000708Atypical behavior
HP:0000713Agitation
HP:0000717Autism
HP:0000723Restrictive behavior
HP:0000729Autistic behavior
HP:0000748Inappropriate laughter
HP:0000750Delayed speech and language development
HP:0000817Reduced eye contact
HP:0001249Intellectual disability
HP:0001250Seizure
HP:0001251Ataxia
HP:0001252Hypotonia
HP:0001256Mild intellectual disability
HP:0001257Spasticity
HP:0001263Global developmental delay
HP:0001265Hyporeflexia
HP:0001268Mental deterioration
HP:0001273Abnormal corpus callosum morphology
HP:0001288Gait disturbance

GWAS associations

12 associations (top):

StudyTraitp-value
GCST000483_7Folate pathway vitamin levels2.000000e-08
GCST002037_6Post-traumatic stress disorder (asjusted for relatedness)2.000000e-06
GCST002642_2Response to simvastatin treatment (PCSK9 protein level change)1.000000e-06
GCST003825_9Systolic blood pressure change trajectory5.000000e-07
GCST006168_7Pulse pressure x alcohol consumption interaction (2df test)1.000000e-09
GCST006609_3Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)7.000000e-08
GCST007201_108Schizophrenia2.000000e-07
GCST007201_347Schizophrenia3.000000e-06
GCST008952_2High chromosomal aberration frequency (chromatid type)2.000000e-06
GCST009823_14Gynecologic disease (multivariate analysis)5.000000e-08
GCST012420_3tricyclic pyrone compound response (IC50)4.000000e-06
GCST012466_3Autism spectrum disorder3.000000e-06

EFO canonical traits (9, from GWAS)

EFO IDTrait name
EFO:0004578homocysteine measurement
EFO:0006899PCSK9 protein measurement
EFO:0006944systolic blood pressure change measurement
EFO:0004329alcohol drinking
EFO:0005763pulse pressure measurement
EFO:0004653response to TNF antagonist
EFO:0005413joint damage measurement
EFO:0009862chromatid-type aberration frequency
EFO:0600033response to mitochondrial complex I inhibitor

MeSH disease descriptors (2)

DescriptorNameTree numbers
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D015518Rett SyndromeC10.597.606.360.455.937; C16.320.322.500.937; C16.320.400.525.937

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2111463 (PROTEIN COMPLEX), CHEMBL5034 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 186,196 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL701BACLOFEN425,446
CHEMBL301742ARBACLOFEN3253
CHEMBL112797SGS-7422309
CHEMBL96GAMMA-AMINOBUTYRIC ACID1160,188

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

2 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2304389GABBR20.000
rs2779562GABBR20.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — GABAB receptors

Most potent curated ligand interactions (1 total), top 1:

LigandActionAffinityParameter
CGP7930Positive6.7pEC50

Binding affinities (BindingDB)

6 measured of 8 human assays (8 total across all organisms); most potent 6 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
5-[1-(4-chlorophenyl)ethyl]-7-(1H-indol-6-yl)-3-methyl-[1,2]oxazolo[4,5-d]pyridazin-4-oneEC50347 nMUS-10556914: Substituted isoxazolopyridazinones and isothiazolopyridazinones and methods of use
5-[1-(4-chlorophenyl)ethyl]-3-methyl-7-(1H-pyrrolo[3,2-b]pyridin-6-yl)-[1,2]oxazolo[4,5-d]pyridazin-4-oneEC50855 nMUS-10556914: Substituted isoxazolopyridazinones and isothiazolopyridazinones and methods of use
CHEMBL237582EC502750 nM
CHEMBL401437EC503470 nM
CHEMBL2322934EC5037800 nM
CHEMBL2322935EC5040000 nM

ChEMBL bioactivities

66 potent at pChembl≥5 of 81 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.70IC500.2nMCHEMBL4763515
9.00Kd1nMCHEMBL1628548
8.92IC501.2nMCHEMBL4791366
8.62IC502.4nMCHEMBL4756657
8.62IC502.4nMCHEMBL112203
8.31IC504.9nMCHEMBL4787614
8.18IC506.6nMCHEMBL112710
8.07EC508.6nMCHEMBL3600560
7.89IC5013nMCHEMBL4847170
7.82IC5015nMARBACLOFEN
7.75IC5018nMCHEMBL113453
7.73IC5018.6nMCHEMBL4745449
7.72IC5018.9nMCHEMBL4762233
7.68IC5021nMCHEMBL4856595
7.63IC5023.2nMCHEMBL4740566
7.60IC5025nMGAMMA-AMINOBUTYRIC ACID
7.54IC5029nMCHEMBL113304
7.46IC5035nMBACLOFEN
7.41IC5039nMCHEMBL430501
7.30IC5050nMBACLOFEN
7.19EC5064nMCHEMBL5207265
7.05EC5090nMCHEMBL5170235
7.01EC5097nMCHEMBL5185974
6.85EC50142nMCHEMBL5204436
6.78IC50166nMCHEMBL113396
6.70IC50200nMCHEMBL312675
6.70EC50199nMCHEMBL5169533
6.70EC50200nMCHEMBL112710
6.68EC50208nMCHEMBL5183971
6.55IC50280nMCHEMBL113217
6.53EC50294nMCHEMBL5187574
6.47EC50341nMCHEMBL5193733
6.44IC50360nMCHEMBL111378
6.38EC50419nMCHEMBL5188066
6.35EC50444nMCHEMBL5202253
6.30EC50496nMCHEMBL5186902
6.30IC50500nMCHEMBL113907
6.28EC50530nMGAMMA-AMINOBUTYRIC ACID
6.21IC50610nM4-AMINO-3- (5-CHLOROTHIEN-2-YL)BUTANOIC ACID
6.20EC50637nMCHEMBL5209256
6.13EC50741.3nMGS-39783
6.12EC50764nMCHEMBL2346820
6.11EC50771nMCHEMBL5209395
6.11IC50780nMCHEMBL111920
6.06IC50880nMCHEMBL109752
6.06EC50871nMCHEMBL393066
6.04IC50920nMCHEMBL111675
6.00EC501000nMARBACLOFEN
5.92IC501200nMCHEMBL312675
5.92EC501202nMCHEMBL391647

PubChem BioAssay actives

63 with measured affinity, of 274 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(4S)-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-benzamidoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0002uM
3-(1R)-1-[[(2S)-3-[5-[(4-azido-2-hydroxy-5-(125I)iodobenzoyl)amino]pentyl-hydroxyphosphoryl]-2-hydroxypropyl]amino]ethylbenzoic acid1237980: Binding affinity to GABA-B receptor (unknown origin)kd0.0010uM
(4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-benzamidoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-4-oxobutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0012uM
(4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-4-oxobutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0024uM
3-aminopropyl-hydroxy-oxophosphanium71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0024uM
(4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0049uM
3-aminopropyl(methyl)phosphinic acid71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0066uM
[(2R)-3-amino-2-fluoropropyl]phosphonic acid1237985: Agonist activity at human recombinant GABA-B receptorec500.0086uM
3-[(1S,6R,9S,12S,15S,21S,24S,27S,30S,33S,36S,39S,45S,48S,53R)-53-[(2-aminoacetyl)amino]-30-(2-amino-2-oxoethyl)-9-[(2S)-butan-2-yl]-36-(3-carbamimidamidopropyl)-6-carbamoyl-24,45-bis(carboxymethyl)-48-(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-21-(1H-imidazol-5-ylmethyl)-8,11,14,20,23,26,29,32,35,38,44,47,50,52-tetradecaoxo-3,4-dithia-7,10,13,19,22,25,28,31,34,37,43,46,49,51-tetradecazatetracyclo[31.17.7.015,19.039,43]heptapentacont-55-yn-12-yl]propanoic acid1762195: Agonist activity at human GABAB expressed in HEK293T cells co-transfected with human CaV2.2 channel assessed as inhibition of CaV2.2-mediated Ba2+ peak-current amplitude at -80 to 10 mV holding potential after 72 hrs by whole cell patch clamp assayic500.0130uM
(3R)-4-amino-3-(4-chlorophenyl)butanoic acid71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0150uM
(3-amino-2-hydroxypropyl)-hydroxy-oxophosphanium71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0180uM
(4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-hydroxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0186uM
(4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-[(2-acetamidoacetyl)amino]-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0189uM
3-[(1R,4S,7S,10S,13S,19S,22S,25S,28R,33R,36R,39S,42S,48S,51S)-33-[(2-aminoacetyl)amino]-4-(2-amino-2-oxoethyl)-25-[(2S)-butan-2-yl]-51-(3-carbamimidamidopropyl)-28-carbamoyl-10,42-bis(carboxymethyl)-39-(hydroxymethyl)-7-[(4-hydroxyphenyl)methyl]-13-(1H-imidazol-5-ylmethyl)-2,5,8,11,14,20,23,26,34,37,40,43,49,52-tetradecaoxo-30,31,55,56-tetrathia-3,6,9,12,15,21,24,27,35,38,41,44,50,53-tetradecazatetracyclo[34.17.4.015,19.044,48]heptapentacontan-22-yl]propanoic acid1762195: Agonist activity at human GABAB expressed in HEK293T cells co-transfected with human CaV2.2 channel assessed as inhibition of CaV2.2-mediated Ba2+ peak-current amplitude at -80 to 10 mV holding potential after 72 hrs by whole cell patch clamp assayic500.0210uM
(4S)-5-[[(2S,3S)-1-[[(2R)-1-amino-1-oxo-3-sulfanylpropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2R)-2-amino-3-sulfanylpropanoyl]amino]-3-sulfanylpropanoyl]amino]-3-hydroxypropanoyl]amino]-3-carboxypropanoyl]pyrrolidine-2-carbonyl]amino]-5-carbamimidamidopentanoyl]amino]-3-sulfanylpropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]pyrrolidine-2-carbonyl]amino]-5-oxopentanoic acid1687077: Activation of human GABAB1/GABAB2 expressed in HEK293 cells co-transfected with rat CaV2.2 channel assessed as reduction in CaV2.2-mediated peak-current amplitude in response to the depolarizing pulse by whole cell patch clamp assayic500.0232uM
.gamma.-aminobutyric acid71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0250uM
(3-amino-2-hydroxypropyl)-methylphosphinic acid71256: Inhibition of [3H]CGP-27492 binding to cat Gamma-aminobutyric acid type B receptoric500.0290uM
Baclofen71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0350uM
[3-amino-2-(4-chlorophenyl)propyl]-hydroxy-oxophosphanium71257: Inhibition of [3H]baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.0390uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(3,5-dichlorophenyl)quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.0640uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-[3-(trifluoromethyl)phenyl]quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.0900uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(3,5-dichlorophenyl)-2-methylquinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.0970uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-methyl-6-[3-(trifluoromethyl)phenyl]quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.1420uM
4-aminobutan-2-yl(methyl)phosphinic acid71256: Inhibition of [3H]CGP-27492 binding to cat Gamma-aminobutyric acid type B receptoric500.1660uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(3-chlorophenyl)-2-methylquinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.1990uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(4-chlorophenyl)quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.2080uM
[(E)-3-aminoprop-1-enyl]-hydroxy-oxophosphanium71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.2800uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(4-fluorophenyl)quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.2940uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-(3,4-dichlorophenyl)quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.3410uM
[3-amino-2-(4-fluorophenyl)propyl]-hydroxy-oxophosphanium71257: Inhibition of [3H]baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.3600uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(3,4-dichlorophenyl)-2-methylquinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.4190uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(4-chlorophenyl)-2-methylquinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.4440uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-6-(2-chlorophenyl)-2-methylquinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.4960uM
3-aminobutyl-hydroxy-oxophosphanium71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.5000uM
4-amino-3-(5-chlorothiophen-2-yl)butanoic acid1237980: Binding affinity to GABA-B receptor (unknown origin)ic500.6100uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-chloro-6-[4-(trifluoromethyl)phenyl]quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.6370uM
4-N,6-N-dicyclopentyl-2-methylsulfanyl-5-nitropyrimidine-4,6-diamine301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S bindingec500.7413uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.7640uM
N-[(1R,2R,4S)-2-bicyclo[2.2.1]heptanyl]-2-methyl-6-[4-(trifluoromethyl)phenyl]quinazolin-4-amine1867062: Positive allosteric modulation of GABA-B receptor (unknown origin) assessed as stimulation of [35S]GTPgammaS binding by [35S]GTPgammaS binding assayec500.7710uM
(3-amino-2-methylpropyl)-hydroxy-oxophosphanium71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.7800uM
N-cyclohexyl-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S bindingec500.8710uM
(3-amino-2-phenylpropyl)-hydroxy-oxophosphanium71257: Inhibition of [3H]baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.8800uM
4-aminobutan-2-yl-hydroxy-oxophosphanium71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic500.9200uM
4-[[(1S,2R,4R)-2-bicyclo[2.2.1]heptanyl]amino]-5-[4-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S bindingec501.2023uM
3-aminopropyl(ethyl)phosphinic acid71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic501.3500uM
N-[(1S,2R,4R)-2-bicyclo[2.2.1]heptanyl]-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S bindingec501.6596uM
N-cycloheptyl-2-methyl-5-[4-(trifluoromethyl)phenyl]pyrimidin-4-amine301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S bindingec501.6596uM
4-N-[(1S,2R,4R)-2-bicyclo[2.2.1]heptanyl]-2-N,2-N-dimethyl-5-[4-(trifluoromethyl)phenyl]pyrimidine-2,4-diamine301941: Activity at GABAB 1b/2 receptor expressed in CHO-K1 cells assessed as effect on glutamate-induced [35S]GTP-gamma-S bindingec501.6596uM
(3S)-4-amino-3-(4-chlorophenyl)butanoic acid71258: Inhibition of [3H]-baclofen binding to Gamma-aminobutyric acid type B receptor of cat cerebellumic501.7700uM
5,7-ditert-butyl-3-hydroxy-3-(trifluoromethyl)-1-benzofuran-2-one729173: Agonist activity at human GABA-B B1/B2 receptor expressed in HEK293 cells assessed as inhibition of forskolin-stimulated cAMP accumulation after 3 hrs by luciferase reporter gene assayec501.9000uM

CTD chemical–gene interactions

60 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidincreases expression, affects expression, affects cotreatment6
bisphenol Adecreases methylation, decreases expression5
Estradiolaffects expression, affects cotreatment, increases expression, increases reaction5
sodium arseniteaffects methylation, increases expression3
gamma-Aminobutyric Acidaffects cotreatment, affects reaction, increases activity, affects binding, increases reaction (+1 more)3
entinostatincreases expression, affects cotreatment2
Formaldehydeincreases expression, decreases expression2
Tetrachlorodibenzodioxinaffects cotreatment, increases expression2
Tretinoinincreases expression2
propionaldehydeincreases expression1
quercitrinincreases expression1
1-(3-chlorophenyl)piperazineaffects cotreatment, affects reaction, increases activity1
cobaltous chloridedecreases expression1
butyraldehydeincreases expression1
manganese chlorideincreases abundance, increases expression1
benzo(e)pyreneincreases methylation1
aflatoxin B2increases methylation1
S-(1,2-dichlorovinyl)cysteineaffects cotreatment, decreases expression1
pentanalincreases expression1
3-aminopropylphosphinic acidincreases activity, increases reaction, affects binding1
CGP 55845Aaffects binding, decreases reaction, increases activity, increases reaction, decreases activity1
CGP 52608affects binding, increases reaction1
CGP 71872affects binding, decreases reaction, increases activity1
methyloneaffects cotreatment, decreases reaction, increases activity1
2,6-di-tert-butyl-4-(3-hydroxy-2,2-dimethylpropyl)phenolaffects binding, increases activity, increases reaction, decreases reaction1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideincreases expression, affects cotreatment1
bisphenol Bdecreases expression1
2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amidedecreases expression, decreases reaction1
dorsomorphinaffects cotreatment, increases expression1
bisphenol Zdecreases expression1

ChEMBL screening assays

57 unique, capped per target: 35 binding, 21 functional, 1 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1679957FunctionalAntagonist activity at human recombinant GABAb 1b/2 receptor expressed in Xenopus laevis oocytes co-expressing GIRK1/4 assessed as inhibition of GABA-induced current by two electrode voltage clamp techniqueNovel Cyclic Phosphinic Acids as GABAC ρ Receptor Antagonists: Design, Synthesis, and Pharmacology. — ACS Med Chem Lett
CHEMBL2401236BindingAntagonist activity at human recombinant GABAB1b2 receptor expressed in Xenopus laevis assessed as inhibition of GABA-induced chloride current production at 300 uM after 2 to 5 days by two-electrode voltage-clamp electrophysiological assayΓ-aminobutyric acid(C) (GABAC) selective antagonists derived from the bioisosteric modification of 4-aminocyclopent-1-enecarboxylic acid: amides and hydroxamates. — J Med Chem
CHEMBL4810231ADMETInhibition of GABA-B receptor (unknown origin) at 0.1 to 1 uMDiscovery of Pemigatinib: A Potent and Selective Fibroblast Growth Factor Receptor (FGFR) Inhibitor. — J Med Chem

Cellosaurus cell lines

1 cell lines: 1 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_LC01CHO-K1 h-GABA-b R1a/R2Spontaneously immortalized cell lineFemale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT05657860PHASE4COMPLETEDGuanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome
NCT05744479PHASE4RECRUITINGMetformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability
NCT06107829PHASE4WITHDRAWNValbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities
NCT06997198PHASE4NOT_YET_RECRUITINGDeutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities
NCT00391261PHASE4COMPLETEDAn Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications.
NCT01028820PHASE4COMPLETEDFMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders
NCT01333865PHASE4COMPLETEDA Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders
NCT01337700PHASE4COMPLETEDMilnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism
NCT01695200PHASE4COMPLETEDOmega-3 Fatty Acids in Autism Spectrum Disorders
NCT02096952PHASE4COMPLETEDMethylphenidate ER Liquid Formulation in Adults With ASD and ADHD
NCT02235467PHASE4COMPLETEDMultisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism
NCT02940574PHASE4COMPLETEDNeural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders
NCT03333629PHASE4COMPLETEDPromoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes
NCT03337646PHASE4COMPLETEDEvaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism
NCT03538431PHASE4COMPLETEDImproving Driving in Young People With Autism Spectrum Disorders
NCT03757585PHASE4COMPLETEDNatural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD)
NCT04903353PHASE4COMPLETEDPragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole
NCT05063656PHASE4COMPLETEDBiomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin
NCT05146245PHASE4UNKNOWNSafety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT
NCT05916339PHASE4RECRUITINGAWARE: Management of ADHD in Autism Spectrum Disorder
NCT05954052PHASE4TERMINATEDA Study of Glutathione in Children With Autism Spectrum Disorder
NCT06853665PHASE4RECRUITINGThe TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine
NCT07054697PHASE4COMPLETEDPilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder
NCT07161804PHASE4COMPLETEDPilot RCT Using Homeopathic Medicines in ASD
NCT07439042PHASE4NOT_YET_RECRUITINGBuspirone for Anxiety in Autistic Youth
NCT02270736PHASE3COMPLETEDClinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability
NCT01302964PHASE3COMPLETEDMirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders
NCT01706523PHASE3TERMINATEDOpen Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders
NCT01825798PHASE3COMPLETEDTreatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD)
NCT01972074PHASE3COMPLETEDBehavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder
NCT02985749PHASE3COMPLETEDA Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder
NCT03197922PHASE3COMPLETEDTreatment of Encopresis in Children With Autism Spectrum Disorders
NCT03504917PHASE3TERMINATEDA Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension
NCT03553875PHASE3TERMINATEDMemantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions
NCT03640156PHASE3COMPLETEDModulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin
NCT03715153PHASE3TERMINATEDEfficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder.
NCT03715166PHASE3TERMINATEDEfficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder
NCT04233502PHASE3WITHDRAWNEfficacy and Safety of Slenyto for Insomnia in Children With ASD
NCT04578756PHASE3COMPLETEDOpen-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder
NCT04623398PHASE3COMPLETEDEffect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency)