GABRB3
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Summary
GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3, HGNC:4083) is a protein-coding gene on chromosome 15q12, encoding Gamma-aminobutyric acid receptor subunit beta-3 (P28472). Beta subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain.
This gene encodes a member of the ligand-gated ionic channel family. The encoded protein is one the subunits of a multi-subunit chloride channel that serves as the receptor for gamma-aminobutyric acid, a major inhibitory neurotransmitter of the mammalian nervous system. This gene is located on the long arm of chromosome 15 in a cluster with two other genes encoding related subunits of the family. This gene may be associated with the pathogenesis of several disorders including Angelman syndrome, Prader-Willi syndrome, nonsyndromic orofacial clefts, epilepsy and autism. Alternatively spliced transcript variants encoding distinct isoforms have been described.
Source: NCBI Gene 2562 — RefSeq curated summary.
At a glance
- Gene–disease (curated): genetic developmental and epileptic encephalopathy (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 10
- Clinical variants (ClinVar): 781 total — 47 pathogenic, 46 likely-pathogenic
- Phenotypes (HPO): 58
- Druggable target: yes — 32 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000814
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4083 |
| Approved symbol | GABRB3 |
| Name | gamma-aminobutyric acid type A receptor subunit beta3 |
| Location | 15q12 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000166206 |
| Ensembl biotype | protein_coding |
| OMIM | 137192 |
| Entrez | 2562 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 12 protein_coding_CDS_not_defined, 7 protein_coding, 4 nonsense_mediated_decay, 1 retained_intron
ENST00000299267, ENST00000311550, ENST00000400188, ENST00000541819, ENST00000545868, ENST00000554556, ENST00000554722, ENST00000555094, ENST00000555632, ENST00000556166, ENST00000556636, ENST00000557641, ENST00000557765, ENST00000621499, ENST00000635832, ENST00000635994, ENST00000636466, ENST00000636512, ENST00000636690, ENST00000637226, ENST00000637293, ENST00000637893, ENST00000638099, ENST00000638149
RefSeq mRNA: 5 — MANE Select: NM_000814
NM_000814, NM_001191320, NM_001191321, NM_001278631, NM_021912
CCDS: CCDS10018, CCDS10019, CCDS53920, CCDS53921
Canonical transcript exons
ENST00000311550 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002209380 | 26543552 | 26548134 |
| ENSE00002510502 | 26772883 | 26773066 |
| ENSE00003471865 | 26583332 | 26583414 |
| ENSE00003477610 | 26772402 | 26772469 |
| ENSE00003577196 | 26580319 | 26580456 |
| ENSE00003578006 | 26772681 | 26772772 |
| ENSE00003642556 | 26567581 | 26567733 |
| ENSE00003648318 | 26560932 | 26561176 |
| ENSE00003673107 | 26621314 | 26621534 |
Expression profiles
Bgee: expression breadth ubiquitous, 219 present calls, max score 98.03.
FANTOM5 (CAGE): breadth broad, TPM avg 5.1029 / max 118.0079, expressed in 590 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149032 | 3.5849 | 389 |
| 149034 | 0.7019 | 204 |
| 149028 | 0.4361 | 199 |
| 149033 | 0.1688 | 56 |
| 149027 | 0.0632 | 24 |
| 149030 | 0.0536 | 21 |
| 149029 | 0.0477 | 17 |
| 149036 | 0.0318 | 16 |
| 149039 | 0.0119 | 4 |
| 149038 | 0.0029 | 3 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle temporal gyrus | UBERON:0002771 | 98.03 | gold quality |
| cortical plate | UBERON:0005343 | 97.24 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 96.85 | gold quality |
| entorhinal cortex | UBERON:0002728 | 96.51 | gold quality |
| endothelial cell | CL:0000115 | 95.63 | gold quality |
| parietal lobe | UBERON:0001872 | 95.17 | gold quality |
| postcentral gyrus | UBERON:0002581 | 94.93 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 94.93 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 93.84 | gold quality |
| islet of Langerhans | UBERON:0000006 | 93.35 | gold quality |
| prefrontal cortex | UBERON:0000451 | 92.00 | gold quality |
| occipital lobe | UBERON:0002021 | 91.99 | gold quality |
| primary visual cortex | UBERON:0002436 | 91.65 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 91.00 | gold quality |
| nucleus accumbens | UBERON:0001882 | 90.97 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 90.95 | gold quality |
| frontal cortex | UBERON:0001870 | 90.87 | gold quality |
| frontal lobe | UBERON:0016525 | 90.86 | gold quality |
| cerebral cortex | UBERON:0000956 | 90.38 | gold quality |
| ganglionic eminence | UBERON:0004023 | 90.27 | gold quality |
| neocortex | UBERON:0001950 | 90.16 | gold quality |
| right frontal lobe | UBERON:0002810 | 89.95 | gold quality |
| temporal lobe | UBERON:0001871 | 89.84 | gold quality |
| telencephalon | UBERON:0001893 | 89.62 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 89.33 | gold quality |
| forebrain | UBERON:0001890 | 88.89 | gold quality |
| Ammon’s horn | UBERON:0001954 | 88.55 | gold quality |
| brain | UBERON:0000955 | 87.86 | gold quality |
| caudate nucleus | UBERON:0001873 | 87.64 | gold quality |
| cerebellar cortex | UBERON:0002129 | 87.56 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 91.41 |
| E-HCAD-25 | yes | 88.56 |
| E-GEOD-137537 | yes | 13.75 |
| E-MTAB-5061 | yes | 13.35 |
| E-GEOD-81547 | yes | 7.51 |
| E-ANND-3 | yes | 6.35 |
| E-GEOD-81608 | yes | 5.40 |
| E-CURD-11 | no | 115.48 |
| E-GEOD-83139 | no | 4.01 |
| E-MTAB-4850 | no | 0.80 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ATOH7, EGR3, FOSL1, HOXD3, JUND, MEF2A, MYOD1, NR1I3, PITX2, REST, SP1, TCF12, TCF3
miRNA regulators (miRDB)
183 targeting GABRB3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- linkage disequilibrium in cleft lip +/- cleft palate (PMID:11810291)
- Association between a GABRB3 polymorphism and autism (PMID:11920158)
- The presence of inherited insomnia in the family of the affected individual suggests a possible link between insomnia and the mutation beta3(R192H). (PMID:12189488)
- modeling of molecular configuration (PMID:12225856)
- using full-length or truncated chimeric subunits it was demonstrated that homologous sequences from beta 3 are important for assembly of GABA(A) receptors composed of alpha(1), beta(3), and gamma(2) subunits (PMID:12367595)
- Lack of anomalies in 15q11-q13 region may be related to small number of probands, heterogenity of studied group, and small number of studied loci and markers. (PMID:12491987)
- This report indicates pronounced adaptive changes in the expression of these GABA(A) receptor subunits related to seizure activity and indicates altered assembly of GABA(A) receptors in temporal lobe epilepsy. (PMID:14503638)
- No significant difference in mRNA expression is found between the control and alcoholic case groups in either the superior frontal or motor cortex for the GABA A beta 3 isoform (PMID:15337300)
- Reduced expression of GABRB3 is associated with Rett, Angelman and autism (PMID:15615769)
- the expression of the GABAA receptor pi subunit may play an important role in the pathogenesis of pancreatic cancer (PMID:15767729)
- Our data indicated that the haplotype ‘GACTCT’ (p = 0.00215, frequency = 53.6%) was overtransmitted which suggests that GABRB2 is in linkage disequilibrium with schizophrenia in the Chinese Han population. (PMID:16023997)
- Reduced expression of the GABRB3 gene could therefore be one potential cause for the development of Childhood Absence Epilepsy. (PMID:16835263)
- alpha4beta3gamma2L receptors have unique kinetic properties that limit the range of GABA applications to which they can respond maximally. (PMID:17124266)
- study failed to replicate an association of the common GABRB3 exon 1a promoter SNP rs4906902 with childhood absence epilepsy. no evidence that the common functional C-variant confers a substantial epileptogenic effect to a broad spectrum of IGE syndromes (PMID:17215107)
- Altered crosstalk between RA, GABAergic, and TGF-beta signaling systems could be involved in human cleft palate fibroblast phenotype. (PMID:17225872)
- finding suggested that single-nucleotide polymorphisms in GABRB3 may play a significant role in the genetic predisposition to autism spectrum disorders in the Korean population (PMID:17230033)
- The results indicate that human hepatocellular carcinoma (HCC) tissues are depolarized compared with adjacent nontumor tissues, and hepatic GABAA-beta3 receptor expression is down-regulated in human HCC. (PMID:17326191)
- These results suggest that MeCP2 acts as a chromatin organizer for optimal expression of both alleles of GABRB3 in neurons. (PMID:17339270)
- Subjects with schizophrenia exhibited expression deficits in GABRB3. (PMID:17471287)
- study found mutations of GABRA1, GABRB3, and GABRG2 appear not to play a major role in the development of familial primary dystonia (PMID:17880575)
- observed no significant difference in allelic frequencies or genotypic distributions of the 11 SNPs of intron 3 of GABRB3 between patients and controls (PMID:17957331)
- In the SNr GABA(A) receptors contain alpha(1), alpha(3), beta(2,3), and gamma(2) subunits and are localized in a weblike network over the cell soma, dendrites, and spines of SNr parvalbumin-positive nonpigmented neurons. (PMID:18085588)
- histamine modulates heteromultimeric GABA(A) receptors and may thus represent an endogenous ligand for an allosteric site (PMID:18281286)
- The G1- alleles of the GABRB3 in children of alcoholics were significantly higher than nonCOAs. (PMID:18358985)
- gene is involved in the pathogenesis of cleft lip with or without cleft palate in the Japanese population (PMID:18452349)
- Mutated GABRB3 could cause absence seizures through a gain in glycosylation of mutated exon 1a and exon 2, affecting maturation and trafficking of GABAR from endoplasmic reticulum to cell surface and resulting in reduced GABA-evoked currents. (PMID:18514161)
- three distinct sets of amino acid residues in the N-terminal extracellular domain of the hbeta1 subunit, which when mutated to the homologous residue in hbeta3 allow expression as a functional homomeric receptor (PMID:18650446)
- Data show that GABRB3 is significantly altered in cerebellum and significant reductions in parietal cortex in subjects with autism. (PMID:18821008)
- GABRB3 may contribute differently to the cleft phenotype in Iowans and in Filipinos, with a stronger effect in cases with palate involvement in Iowa, versus an effect in cases with involvement only of the lip in the Philippines. (PMID:18837046)
- The data provide preliminary evidence that GABRB3 gene is associated with autism spectrum disorders in Korea. (PMID:19430570)
- This study provides evidence of an association between a specific GABA(A) receptor defect and autism, direct evidence that this defect causes synaptic dysfunction that is autism relevant and maternal risk effect in the 15q11-q13 autism duplication region. (PMID:19935738)
- Gaba (A) beta1 and beta3 receptor subunit mRNA levels in the dorsolateral prefrontal cortex are not altered in schizophrenia. (PMID:20843900)
- Our data suggest the K289M mutation in gamma2 confers GABA(A)Rs with enhanced sensitivity of their membrane diffusion to neuronal activity (PMID:21908847)
- In comparison to healthy donors, chronic hepatitis C patients were found to present an increase in the expression of gamma-aminobutyric acid A receptor alpha1 subunit and a decrease in the expression of beta3 subunit in their blood mononuclear leukocytes. (PMID:22080424)
- Photoaffinity labeling and pepetide mapping data suggest that a homologous etomidate/general anesthetic binding site exists at the beta3-beta3 subunit interface in alpha1beta3 GABA receptor type A, specifically involving beta3-Met227. (PMID:22243422)
- Our results suggest both a mechanism for mutation-induced hyperexcitability and a novel role for the GABRB3 subunit N-terminal alpha-helix in receptor assembly and gating. (PMID:22303015)
- results provide additional evidence that GABRB3 and MAOB/NDP gene regions might constitute risk factors for hallucinations and delusions in schizophrenia. (PMID:22414661)
- The haplotype of C-A in rs4906902 and rs8179184 loci in the promoter of GABRB3 gene may be maternally inherited and positively associated with schizophrenia. (PMID:22812221)
- With a weak association, data do not support the hypothesis that the GABRB3 variants are a cause of nonsyndromic cleft lip and/or palate (PMID:23438326)
- Specificity of intersubunit general anesthetic-binding sites in the transmembrane domain of the human alpha1beta3gamma2 gamma-aminobutyric acid type A (GABAA) receptor. (PMID:23677991)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gabrb3 | ENSDARG00000023771 |
| mus_musculus | Gabrb3 | ENSMUSG00000033676 |
| rattus_norvegicus | Gabrb3 | ENSRNOG00000060599 |
Paralogs (45): GABRA3 (ENSG00000011677), GABRA1 (ENSG00000022355), CHRNA3 (ENSG00000080644), GABRP (ENSG00000094755), CHRNA4 (ENSG00000101204), GLRA2 (ENSG00000101958), GABRE (ENSG00000102287), CHRNE (ENSG00000108556), GABRA4 (ENSG00000109158), GLRB (ENSG00000109738), GABRR2 (ENSG00000111886), GABRG2 (ENSG00000113327), CHRNB4 (ENSG00000117971), CHRNA2 (ENSG00000120903), CHRNA10 (ENSG00000129749), CHRND (ENSG00000135902), CHRNA1 (ENSG00000138435), GLRA3 (ENSG00000145451), GABRA6 (ENSG00000145863), GABRB2 (ENSG00000145864), GLRA1 (ENSG00000145888), GABRR1 (ENSG00000146276), CHRNB3 (ENSG00000147432), CHRNA6 (ENSG00000147434), HTR3B (ENSG00000149305), GABRA2 (ENSG00000151834), CHRNB2 (ENSG00000160716), GABRG1 (ENSG00000163285), GABRB1 (ENSG00000163288), CHRFAM7A (ENSG00000166664), HTR3A (ENSG00000166736), CHRNA5 (ENSG00000169684), CHRNB1 (ENSG00000170175), CHRNA9 (ENSG00000174343), CHRNA7 (ENSG00000175344), HTR3C (ENSG00000178084), GABRG3 (ENSG00000182256), GABRR3 (ENSG00000183185), HTR3E (ENSG00000186038), HTR3D (ENSG00000186090)
Protein
Protein identifiers
Gamma-aminobutyric acid receptor subunit beta-3 — P28472 (reviewed: P28472)
Alternative names: GABA(A) receptor subunit beta-3
All UniProt accessions (8): A0A1B0GU30, A0A1B0GVW3, P28472, F5H7N0, G3V373, G3V4W7, H0YJU6, X5DQY4
UniProt curated annotations — full annotation on UniProt →
Function. Beta subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain. GABA-gated chloride channels, also named GABA(A) receptors (GABAAR), consist of five subunits arranged around a central pore and contain GABA active binding site(s) located at the alpha and beta subunit interface(s). GABAARs containing beta-3/GABRB3 subunit are found at both synaptic and extrasynaptic sites. When activated by GABA, GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Chloride influx into the postsynaptic neuron following GABAAR opening decreases the neuron ability to generate a new action potential, thereby reducing nerve transmission. GABAARs containing alpha-1 and beta-3 subunits exhibit synaptogenic activity; the gamma-2 subunit being necessary but not sufficient to induce rapid synaptic contacts formation. Extrasynaptic beta-3 receptors contribute to the tonic GABAergic inhibition. GABAARs containing alpha-1, beta-3 and epsilon subunits may also permit spontaneous chloride channel activity while preserving the structural information required for GABA-gated openings. Beta-containing GABAARs can simultaneously bind GABA and histamine where histamine binds at the interface of two neighboring beta subunits, which may be involved in the regulation of sleep and wakefulness. Plays an important role in somatosensation and in the production of antinociception.
Subunit / interactions. Heteropentamer, formed by a combination of alpha (GABRA1-6), beta (GABRB1-3), gamma (GABRG1-3), delta (GABRD), epsilon (GABRE), rho (GABRR1-3), pi (GABRP) and theta (GABRQ) chains, each subunit exhibiting distinct physiological and pharmacological properties. Can form functional homopentamers (in vitro). Interacts with UBQLN1. May interact with KIF21B. Identified in a complex of 720 kDa composed of LHFPL4, NLGN2, GABRA1, GABRB2, GABRG2 and GABRB3. Interacts with LHFPL4. Interacts with GIT1; this interaction is required for synaptic GABRB3 surface stability and inhibitory synapse strength.
Subcellular location. Postsynaptic cell membrane. Cell membrane. Cytoplasmic vesicle membrane.
Disease relevance. Epilepsy, childhood absence 5 (ECA5) [MIM:612269] A subtype of idiopathic generalized epilepsy characterized by an onset at age 6-7 years, frequent absence seizures (several per day) and bilateral, synchronous, symmetric 3-Hz spike waves on EEG. Tonic-clonic seizures often develop in adolescence. Absence seizures may either remit or persist into adulthood. Disease susceptibility is associated with variants affecting the gene represented in this entry. Developmental and epileptic encephalopathy 43 (DEE43) [MIM:617113] A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE43 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Potentiated by histamine.
Domain organisation. GABAARs subunits share a common topological structure: a peptide sequence made up of a long extracellular N-terminal, four transmembrane domains, intracellular or cytoplasmic domain located between the third and the fourth transmembrane domains.
Polymorphism. GABRB3 variants may be associated with insomnia, a condition of inability to initiate or maintain sleep [MIM:137192].
Similarity. Belongs to the ligand-gated ion channel (TC 1.A.9) family. Gamma-aminobutyric acid receptor (TC 1.A.9.5) subfamily. GABRB3 sub-subfamily.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P28472-1 | 1 | yes |
| P28472-2 | 2 | |
| P28472-3 | 3 | |
| P28472-4 | 4 |
RefSeq proteins (5): NP_000805, NP_001178249, NP_001178250, NP_001265560, NP_068712 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002289 | GABAAb_rcpt | Family |
| IPR006028 | GABAA/Glycine_rcpt | Family |
| IPR006029 | Neurotrans-gated_channel_TM | Domain |
| IPR006201 | Neur_channel | Family |
| IPR006202 | Neur_chan_lig-bd | Domain |
| IPR018000 | Neurotransmitter_ion_chnl_CS | Conserved_site |
| IPR036719 | Neuro-gated_channel_TM_sf | Homologous_superfamily |
| IPR036734 | Neur_chan_lig-bd_sf | Homologous_superfamily |
| IPR038050 | Neuro_actylchol_rec | Homologous_superfamily |
Pfam: PF02931, PF02932
Catalyzed reactions (Rhea), 1 shown:
- chloride(in) = chloride(out) (RHEA:29823)
UniProt features (76 total): sequence variant 17, strand 13, helix 11, binding site 10, topological domain 5, turn 5, transmembrane region 4, glycosylation site 3, splice variant 3, sequence conflict 2, signal peptide 1, chain 1, disulfide bond 1
Structure
Experimental structures (PDB)
95 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7A5V | ELECTRON MICROSCOPY | 1.7 |
| 9EQG | ELECTRON MICROSCOPY | 2.4 |
| 6QFA | ELECTRON MICROSCOPY | 2.49 |
| 7QN5 | ELECTRON MICROSCOPY | 2.5 |
| 9FAS | ELECTRON MICROSCOPY | 2.5 |
| 9FEU | ELECTRON MICROSCOPY | 2.5 |
| 9FFU | ELECTRON MICROSCOPY | 2.5 |
| 9G2E | ELECTRON MICROSCOPY | 2.5 |
| 9FEX | ELECTRON MICROSCOPY | 2.6 |
| 8PET | ELECTRON MICROSCOPY | 2.6 |
| 9FGG | ELECTRON MICROSCOPY | 2.6 |
| 9FAJ | ELECTRON MICROSCOPY | 2.6 |
| 9FAK | ELECTRON MICROSCOPY | 2.6 |
| 7QNE | ELECTRON MICROSCOPY | 2.7 |
| 9FG7 | ELECTRON MICROSCOPY | 2.7 |
| 9FG9 | ELECTRON MICROSCOPY | 2.7 |
| 9G2D | ELECTRON MICROSCOPY | 2.7 |
| 7PBZ | ELECTRON MICROSCOPY | 2.79 |
| 9FF2 | ELECTRON MICROSCOPY | 2.8 |
| 9FFL | ELECTRON MICROSCOPY | 2.8 |
| 9FFV | ELECTRON MICROSCOPY | 2.8 |
| 9FAP | ELECTRON MICROSCOPY | 2.8 |
| 7QN6 | ELECTRON MICROSCOPY | 2.9 |
| 7QN9 | ELECTRON MICROSCOPY | 2.9 |
| 7QNC | ELECTRON MICROSCOPY | 2.9 |
| 9FEY | ELECTRON MICROSCOPY | 2.9 |
| 9FG8 | ELECTRON MICROSCOPY | 2.9 |
| 9FGF | ELECTRON MICROSCOPY | 2.9 |
| 9FAQ | ELECTRON MICROSCOPY | 2.9 |
| 9FAW | ELECTRON MICROSCOPY | 2.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P28472-F1 | 80.64 | 0.63 |
Antibody-complex structures (SAbDab): 57 — 5O8F, 5OJM, 6A96, 6HUG, 6HUJ, 6HUK, 6HUO, 6HUP, 6I53, 6QFA, 7A5V, 7PBD, 7PBZ, 7PC0, 7QN5, 7QN6, 7QN7, 7QN8, 7QN9, 7QNA, 7QNB, 7QNC, 7QND, 7QNE, 8PET (+32 more)
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (10): 120–122; 122 (in chain a); 122 (in chain b); 180–182; 180 (in chain a); 181–182 (in chain b); 182 (in chain a); 225; 227 (in chain a); 227 (in chain b)
Disulfide bonds (1): 161–175
Glycosylation sites (3): 33, 105, 174
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-1236394 | Signaling by ERBB4 |
| R-HSA-977443 | GABA receptor activation |
MSigDB gene sets: 430 (showing top):
GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, GOBP_CIRCADIAN_RHYTHM, GOBP_DENDRITE_DEVELOPMENT, GOBP_MEMORY, E2F_Q4, GOBP_HINDBRAIN_DEVELOPMENT, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_METENCEPHALON_DEVELOPMENT, GOBP_COGNITION, GOBP_RESPONSE_TO_ZINC_ION, MODULE_274, GOBP_SENSORY_PERCEPTION_OF_TEMPERATURE_STIMULUS, GOBP_BEHAVIOR, E2F4DP1_01
GO Biological Process (30): signal transduction (GO:0007165), gamma-aminobutyric acid signaling pathway (GO:0007214), learning (GO:0007612), memory (GO:0007613), response to xenobiotic stimulus (GO:0009410), reproductive behavior (GO:0019098), cerebellum development (GO:0021549), social behavior (GO:0035176), exploration behavior (GO:0035640), circadian sleep/wake cycle, REM sleep (GO:0042747), synaptic transmission, GABAergic (GO:0051932), roof of mouth development (GO:0060021), hard palate development (GO:0060022), inhibitory postsynaptic potential (GO:0060080), inner ear receptor cell development (GO:0060119), innervation (GO:0060384), motor behavior (GO:0061744), cellular response to zinc ion (GO:0071294), cellular response to histamine (GO:0071420), response to anesthetic (GO:0072347), cochlea development (GO:0090102), chloride transmembrane transport (GO:1902476), inhibitory synapse assembly (GO:1904862), monoatomic ion transport (GO:0006811), chloride transport (GO:0006821), chemical synaptic transmission (GO:0007268), nervous system development (GO:0007399), brain development (GO:0007420), monoatomic ion transmembrane transport (GO:0034220), neuron development (GO:0048666)
GO Molecular Function (9): GABA-A receptor activity (GO:0004890), GABA-gated chloride ion channel activity (GO:0022851), identical protein binding (GO:0042802), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), transmembrane signaling receptor activity (GO:0004888), monoatomic ion channel activity (GO:0005216), extracellular ligand-gated monoatomic ion channel activity (GO:0005230), chloride channel activity (GO:0005254), signaling receptor activity (GO:0038023)
GO Cellular Component (12): plasma membrane (GO:0005886), cell surface (GO:0009986), cytoplasmic vesicle membrane (GO:0030659), chloride channel complex (GO:0034707), dendritic spine (GO:0043197), postsynaptic membrane (GO:0045211), GABA-ergic synapse (GO:0098982), postsynaptic specialization membrane (GO:0099634), GABA-A receptor complex (GO:1902711), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Signaling by Receptor Tyrosine Kinases | 1 |
| Neurotransmitter receptors and postsynaptic signal transmission | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| behavior | 4 |
| anatomical structure development | 3 |
| GABA receptor activity | 2 |
| learning or memory | 2 |
| response to chemical | 2 |
| regulation of postsynaptic membrane potential | 2 |
| transmitter-gated monoatomic ion channel activity | 2 |
| cellular anatomical structure | 2 |
| postsynapse | 2 |
| synaptic membrane | 2 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cell-cell signaling | 1 |
| multicellular organismal reproductive process | 1 |
| metencephalon development | 1 |
| biological process involved in intraspecies interaction between organisms | 1 |
| circadian sleep/wake cycle process | 1 |
| circadian sleep/wake cycle, sleep | 1 |
| chemical synaptic transmission | 1 |
| secondary palate development | 1 |
| chemical synaptic transmission, postsynaptic | 1 |
| neuron development | 1 |
| inner ear receptor cell differentiation | 1 |
| nerve development | 1 |
| multicellular organismal process | 1 |
| response to zinc ion | 1 |
| cellular response to metal ion | 1 |
| response to histamine | 1 |
| cellular response to nitrogen compound | 1 |
| chloride channel activity | 1 |
| ligand-gated monoatomic anion channel activity | 1 |
| protein binding | 1 |
| signaling receptor activity | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| ligand-gated monoatomic ion channel activity | 1 |
| monoatomic anion channel activity | 1 |
Protein interactions and networks
STRING
1922 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GABRB3 | UBE3A | P78355 | 867 |
| GABRB3 | SNRPN | P14648 | 845 |
| GABRB3 | ATP10A | O60312 | 825 |
| GABRB3 | GAD1 | Q99259 | 792 |
| GABRB3 | MECP2 | P51608 | 779 |
| GABRB3 | MKRN3 | Q13064 | 746 |
| GABRB3 | SHANK3 | Q9BYB0 | 746 |
| GABRB3 | GABBR2 | O75899 | 724 |
| GABRB3 | CDKL5 | O76039 | 707 |
| GABRB3 | NDN | Q99608 | 705 |
| GABRB3 | CLCN2 | P51788 | 686 |
| GABRB3 | CACNA1H | O95180 | 671 |
| GABRB3 | GRIA2 | P42262 | 634 |
| GABRB3 | GAD2 | Q05329 | 634 |
| GABRB3 | SCN1A | P35498 | 632 |
IntAct
28 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GABRB3 | GABRB3 | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| GABRA1 | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| MCOLN3 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| CHRNA4 | FZD6 | psi-mi:“MI:0914”(association) | 0.530 |
| GABRA1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| GABRG2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| GABRB3 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GABRB3 | GABRA5 | psi-mi:“MI:0407”(direct interaction) | 0.360 |
| CHRNA4 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| CHRNB4 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| GLRA3 | GCNT3 | psi-mi:“MI:0914”(association) | 0.350 |
| GABRA6 | HMGCR | psi-mi:“MI:0914”(association) | 0.350 |
| GABRB2 | GABRB3 | psi-mi:“MI:0914”(association) | 0.350 |
| GABRA4 | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.320 |
| GABRA4 | GABRD | psi-mi:“MI:0915”(physical association) | 0.320 |
| GABRB3 | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.320 |
| GABRB3 | GABRD | psi-mi:“MI:0915”(physical association) | 0.320 |
| Arfgef2 | GABRA1 | psi-mi:“MI:0403”(colocalization) | 0.270 |
BioGRID (22): GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), AKAP5 (Reconstituted Complex), AKAP5 (Affinity Capture-Western), PRKCA (Reconstituted Complex), PRKACA (Reconstituted Complex), GABRB3 (Affinity Capture-RNA), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS)
ESM2 similar proteins: D1LYT2, O94925, P08219, P08220, P0C2W5, P10063, P10064, P14867, P15431, P16305, P18505, P18507, P18508, P19019, P19150, P19969, P20236, P21548, P22300, P22723, P23574, P23576, P24045, P26048, P26049, P27681, P28472, P28473, P30191, P31644, P34903, P47869, P47870, P50571, P62812, P62813, P63079, P63080, P63137, P63138
Diamond homologs: A0A1S4H2E2, A8MPY1, D1LYT2, G5EBR3, O14764, O75311, O93430, P0C2W5, P15431, P18505, P18506, P19019, P20781, P22771, P22933, P23416, P24045, P25123, P28472, P47870, P48167, P48168, P63079, P63080, P63137, P63138, Q08832, Q61603, Q75NA5, Q7TNC8, Q94900, Q9BLY8, Q9GJS9, Q9V9Y4, F1R8P4, O00591, O09028, O18276, P07727, P08219
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GABRB3 | “form complex” | “GABA-A (a4-b3-d) receptor” | binding |
| GABRB3 | “form complex” | “GABA-A (a6-b3-d) receptor” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 19 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| GABA receptor activation | 6 | 135.9× | 5e-11 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| gamma-aminobutyric acid signaling pathway | 7 | 237.8× | 2e-14 |
| inhibitory synapse assembly | 6 | 234.1× | 2e-12 |
| synaptic transmission, GABAergic | 7 | 216.8× | 2e-14 |
| chloride transmembrane transport | 8 | 118.7× | 2e-14 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
781 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 47 |
| Likely pathogenic | 46 |
| Uncertain significance | 311 |
| Likely benign | 260 |
| Benign | 51 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069296 | NM_000814.6(GABRB3):c.288G>T (p.Arg96Ser) | Pathogenic |
| 1069675 | NC_000015.9:g.(?26792940)(27020442_?)del | Pathogenic |
| 1164045 | NM_000814.6(GABRB3):c.675C>G (p.Phe225Leu) | Pathogenic |
| 1315905 | NM_000814.6(GABRB3):c.240+2T>C | Pathogenic |
| 1364700 | NM_000814.6(GABRB3):c.923T>G (p.Met308Arg) | Pathogenic |
| 1452714 | NM_000814.6(GABRB3):c.374del (p.Asn125fs) | Pathogenic |
| 1453717 | NM_000814.6(GABRB3):c.860C>T (p.Thr287Ile) | Pathogenic |
| 1456555 | NM_000814.6(GABRB3):c.405_406del (p.Val136fs) | Pathogenic |
| 1460165 | NM_000814.6(GABRB3):c.470C>T (p.Thr157Met) | Pathogenic |
| 153815 | GRCh38/hg38 15q11.2-13.1(chr15:23328044-28315123)x1 | Pathogenic |
| 1723205 | NM_000814.6(GABRB3):c.580C>T (p.Arg194Ter) | Pathogenic |
| 2003106 | NM_000814.6(GABRB3):c.6G>A (p.Trp2Ter) | Pathogenic |
| 2423402 | NC_000015.9:g.(?26866441)(26866701_?)del | Pathogenic |
| 2500725 | NM_000814.6(GABRB3):c.929T>G (p.Leu310Arg) | Pathogenic |
| 254262 | NM_000814.6(GABRB3):c.545A>T (p.Tyr182Phe) | Pathogenic |
| 254263 | NM_000814.6(GABRB3):c.745C>A (p.Gln249Lys) | Pathogenic |
| 254264 | NM_000814.6(GABRB3):c.913G>A (p.Ala305Thr) | Pathogenic |
| 2921785 | NM_000814.6(GABRB3):c.927C>A (p.Tyr309Ter) | Pathogenic |
| 2947142 | NM_000814.6(GABRB3):c.987C>G (p.Tyr329Ter) | Pathogenic |
| 2947221 | NM_000814.6(GABRB3):c.817G>A (p.Ala273Thr) | Pathogenic |
| 2949842 | NM_000814.6(GABRB3):c.238A>C (p.Met80Leu) | Pathogenic |
| 3243811 | NC_000015.9:g.(?26792940)(27018109_?)del | Pathogenic |
| 3243812 | NC_000015.9:g.(?27017529)(27018109_?)del | Pathogenic |
| 3243813 | NC_000015.9:g.(?26792940)(26866701_?)del | Pathogenic |
| 3243815 | NC_000015.9:g.(?26792940)(26828581_?)del | Pathogenic |
| 3251936 | NM_000814.6(GABRB3):c.76C>T (p.Gln26Ter) | Pathogenic |
| 3340580 | NM_000814.6(GABRB3):c.550T>C (p.Tyr184His) | Pathogenic |
| 3342557 | NM_021912.5(GABRB3):c.39G>A (p.Trp13Ter) | Pathogenic |
| 3384351 | NM_000814.6(GABRB3):c.229G>A (p.Glu77Lys) | Pathogenic |
| 3391509 | NM_000814.6(GABRB3):c.239T>A (p.Met80Lys) | Pathogenic |
SpliceAI
4460 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:26561174:TCC:T | acceptor_gain | 1.0000 |
| 15:26561174:TCCCT:T | acceptor_loss | 1.0000 |
| 15:26561175:CC:C | acceptor_gain | 1.0000 |
| 15:26561175:CCC:C | acceptor_gain | 1.0000 |
| 15:26561176:CC:C | acceptor_gain | 1.0000 |
| 15:26561176:CCTAG:C | acceptor_loss | 1.0000 |
| 15:26561177:C:CC | acceptor_gain | 1.0000 |
| 15:26561177:CTA:C | acceptor_loss | 1.0000 |
| 15:26561178:T:A | acceptor_loss | 1.0000 |
| 15:26567575:ACAT:A | donor_loss | 1.0000 |
| 15:26567576:CATA:C | donor_loss | 1.0000 |
| 15:26567577:ATAC:A | donor_loss | 1.0000 |
| 15:26567578:TA:T | donor_loss | 1.0000 |
| 15:26567579:A:AC | donor_gain | 1.0000 |
| 15:26567580:C:CC | donor_gain | 1.0000 |
| 15:26567734:C:CC | acceptor_gain | 1.0000 |
| 15:26580314:CTCA:C | donor_loss | 1.0000 |
| 15:26580315:TCACC:T | donor_loss | 1.0000 |
| 15:26580316:CA:C | donor_loss | 1.0000 |
| 15:26580317:ACCTG:A | donor_loss | 1.0000 |
| 15:26580318:C:T | donor_loss | 1.0000 |
| 15:26580452:GCCAT:G | acceptor_gain | 1.0000 |
| 15:26580453:CCAT:C | acceptor_gain | 1.0000 |
| 15:26580453:CCATC:C | acceptor_gain | 1.0000 |
| 15:26580454:CAT:C | acceptor_gain | 1.0000 |
| 15:26580454:CATC:C | acceptor_gain | 1.0000 |
| 15:26580455:AT:A | acceptor_gain | 1.0000 |
| 15:26580455:ATCT:A | acceptor_loss | 1.0000 |
| 15:26580456:TCTG:T | acceptor_loss | 1.0000 |
| 15:26580457:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
3106 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:26547869:T:A | D449V | 1.000 |
| 15:26547869:T:G | D449A | 1.000 |
| 15:26547870:C:G | D449H | 1.000 |
| 15:26561028:G:C | N328K | 1.000 |
| 15:26561028:G:T | N328K | 1.000 |
| 15:26561038:G:T | A325D | 1.000 |
| 15:26561042:A:G | Y324H | 1.000 |
| 15:26561047:A:G | L322P | 1.000 |
| 15:26561050:A:G | L321P | 1.000 |
| 15:26561050:A:T | L321H | 1.000 |
| 15:26561053:G:T | A320D | 1.000 |
| 15:26561058:G:C | F318L | 1.000 |
| 15:26561058:G:T | F318L | 1.000 |
| 15:26561060:A:G | F318L | 1.000 |
| 15:26561075:A:G | C313R | 1.000 |
| 15:26561083:A:G | L310P | 1.000 |
| 15:26561092:T:A | D307V | 1.000 |
| 15:26561092:T:G | D307A | 1.000 |
| 15:26561093:C:G | D307H | 1.000 |
| 15:26561100:T:A | K304N | 1.000 |
| 15:26561100:T:G | K304N | 1.000 |
| 15:26561119:G:T | P298H | 1.000 |
| 15:26561158:G:T | T285K | 1.000 |
| 15:26561161:A:C | L284R | 1.000 |
| 15:26561161:A:G | L284P | 1.000 |
| 15:26561161:A:T | L284Q | 1.000 |
| 15:26561164:A:T | V283E | 1.000 |
| 15:26561176:C:T | G279E | 1.000 |
| 15:26567581:C:A | G279W | 1.000 |
| 15:26567581:C:G | G279R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000004673 (15:26546511 G>A), RS1000009059 (15:26630226 A>G), RS1000016919 (15:26552325 C>T), RS1000023925 (15:26676934 C>A), RS1000026523 (15:26733141 T>A), RS1000033739 (15:26632204 C>A,T), RS1000055841 (15:26670537 A>T), RS1000056365 (15:26732853 C>A), RS1000060223 (15:26579618 T>C), RS1000077152 (15:26591454 T>A), RS1000122231 (15:26580171 A>G), RS1000133990 (15:26695082 T>C), RS1000140318 (15:26770086 C>A,G,T), RS1000158007 (15:26672119 A>C), RS1000192968 (15:26693139 C>A,T)
Disease associations
OMIM: gene MIM:137192 | disease phenotypes: MIM:612269, MIM:617113, MIM:600131, MIM:181500, MIM:308350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental and epileptic encephalopathy, 43 | Definitive | Autosomal dominant |
| genetic developmental and epileptic encephalopathy | Definitive | Autosomal dominant |
| epilepsy, childhood absence, susceptibility to, 5 | Definitive | Autosomal dominant |
| Lennox-Gastaut syndrome | Supportive | Autosomal dominant |
| childhood absence epilepsy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| genetic developmental and epileptic encephalopathy | Definitive | AD |
Mondo (12): epilepsy, childhood absence, susceptibility to, 5 (MONDO:0012843), developmental and epileptic encephalopathy, 43 (MONDO:0014921), epilepsy, childhood absence, susceptibility to, 1 (MONDO:0020759), insomnia (MONDO:0013600), schizophrenia (MONDO:0005090), myoepithelial tumor (MONDO:0002380), epilepsy (MONDO:0005027), intellectual disability (MONDO:0001071), developmental and epileptic encephalopathy, 1 (MONDO:0010632), genetic developmental and epileptic encephalopathy (MONDO:0100062), Lennox-Gastaut syndrome (MONDO:0016532), childhood absence epilepsy (MONDO:0010826)
Orphanet (3): Childhood absence epilepsy (Orphanet:64280), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
58 total (30 of 58 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000020 | Urinary incontinence |
| HP:0000708 | Atypical behavior |
| HP:0000709 | Psychosis |
| HP:0000716 | Depression |
| HP:0000718 | Aggressive behavior |
| HP:0000729 | Autistic behavior |
| HP:0000737 | Irritability |
| HP:0000739 | Anxiety |
| HP:0000741 | Apathy |
| HP:0000752 | Hyperactivity |
| HP:0000980 | Pallor |
| HP:0001249 | Intellectual disability |
| HP:0001251 | Ataxia |
| HP:0001263 | Global developmental delay |
| HP:0001268 | Mental deterioration |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001328 | Specific learning disability |
| HP:0001336 | Myoclonus |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002121 | Generalized non-motor (absence) seizure |
| HP:0002123 | Generalized myoclonic seizure |
| HP:0002321 | Vertigo |
| HP:0002353 | EEG abnormality |
| HP:0002360 | Sleep disturbance |
| HP:0002363 | Abnormal brainstem morphology |
| HP:0002373 | Febrile seizure (within the age range of 3 months to 6 years) |
| HP:0002376 | Developmental regression |
| HP:0002521 | Hypsarrhythmia |
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000477_24 | Cognitive performance | 2.000000e-06 |
| GCST000785_3 | Longevity | 1.000000e-06 |
| GCST002408_14 | Response to methotrexate in juvenile idiopathic arthritis | 3.000000e-06 |
| GCST004904_176 | Body mass index | 3.000000e-08 |
| GCST008170_3 | Thyroglobulin plasma levels | 2.000000e-06 |
| GCST008181_11 | Spontaneous preterm birth without premature rupture of membranes | 5.000000e-06 |
| GCST009196_7 | Pericalcarine cortex volume | 7.000000e-06 |
| GCST010002_162 | Refractive error | 4.000000e-11 |
| GCST010396_211 | Gut microbiota (bacterial taxa, hurdle binary method) | 4.000000e-06 |
| GCST011050_4 | Postprandial triglyceride response | 3.000000e-06 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003926 | neuropsychological test |
| EFO:0004340 | body mass index |
| EFO:0010050 | thyroglobulin measurement |
| EFO:0006917 | spontaneous preterm birth |
| EFO:0007874 | gut microbiome measurement |
| EFO:0004530 | triglyceride measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004827 | Epilepsy | C10.228.140.490 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065768 | Lennox Gastaut Syndrome | C10.228.140.490.493.750; C16.320.495 |
| D009208 | Myoepithelioma | C04.557.435.585 |
| D007319 | Sleep Initiation and Maintenance Disorders | C10.886.425.800.800; F03.870.400.800.800 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (19): CHEMBL1847 (SINGLE PROTEIN), CHEMBL2093872 (PROTEIN COMPLEX GROUP), CHEMBL2094120 (PROTEIN COMPLEX), CHEMBL2094121 (PROTEIN COMPLEX), CHEMBL2094122 (PROTEIN COMPLEX), CHEMBL2094130 (PROTEIN COMPLEX), CHEMBL2095190 (PROTEIN COMPLEX), CHEMBL2109244 (PROTEIN COMPLEX GROUP), CHEMBL2111366 (PROTEIN COMPLEX), CHEMBL3430899 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
32 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 527,705 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL15891 | LINDANE | 4 | 83,653 |
| CHEMBL448 | PENTOBARBITAL | 4 | 49,933 |
| CHEMBL1082407 | ENZALUTAMIDE | 4 | 9,652 |
| CHEMBL12 | DIAZEPAM | 4 | 92,281 |
| CHEMBL1544 | LIOTHYRONINE | 4 | 23,700 |
| CHEMBL1568698 | GANAXOLONE | 4 | 1,657 |
| CHEMBL207538 | BREXANOLONE | 4 | 1,585 |
| CHEMBL3183409 | APALUTAMIDE | 4 | 4,076 |
| CHEMBL407 | FLUMAZENIL | 4 | 7,150 |
| CHEMBL452 | CLONAZEPAM | 4 | 33,297 |
| CHEMBL13280 | FLUNITRAZEPAM | 4 | 11,549 |
| CHEMBL451 | CHLORDIAZEPOXIDE | 4 | 36,533 |
| CHEMBL646 | TRIAZOLAM | 4 | 21,589 |
| CHEMBL911 | ZOLPIDEM | 4 | 17,821 |
| CHEMBL526 | PROPOFOL | 4 | 28,835 |
| CHEMBL1521 | ZALEPLON | 4 | 9,958 |
| CHEMBL4105630 | ZURANOLONE | 4 | 290 |
| CHEMBL268254 | DELORAZEPAM | 2 | 1,308 |
| CHEMBL275638 | FLAVONE | 2 | 88,985 |
| CHEMBL287631 | PROGABIDE | 2 | 3,853 |
| CHEMBL454095 | ABECARNIL | 2 | |
| CHEMBL8260 | BAICALEIN | 2 | |
| CHEMBL200177 | MK-0777 | 2 | |
| CHEMBL3647536 | DARIGABAT | 2 | |
| CHEMBL366947 | BRETAZENIL | 2 | |
| CHEMBL1397886 | LORECLEZOLE | 2 | |
| CHEMBL190279 | ALFAXALONE | 2 | |
| CHEMBL3681419 | BASMISANIL | 2 | |
| CHEMBL1783282 | AZD7325 | 2 | |
| CHEMBL273481 | MUSCIMOL | 1 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs4906902 | Toxicity | 3 | opioids | Opioid-Related Disorders |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs4906902 | GABRB3 | 3 | 2.00 | 1 | opioids |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: lgic — GABAA receptors
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| etazolate | Binding | 5.46 | pIC50 |
Binding affinities (BindingDB)
369 measured of 380 human assays (381 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-5,6-dihydropyridin-2(1H)-one | KI | 0.27 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (R)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-one | KI | 0.39 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(5-Chloropyridin-2-yl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 0.46 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[5-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]pyrido[2,3-d]pyridazin-8-yl]piperazin-2-one | KI | 0.49 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)imidazolidin-2-one | KI | 0.52 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-2-fluoro-7,8,9,10-tetrahydro-5H-pyrazino[1,2-a]pyrido[3,2-e]pyrazin-6(6aH)-one | KI | 0.54 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (9aR)-8-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]pyridazin-3-yl]-1,3,4,7,9,9a-hexahydropyrazino[2,1-c][1,4]oxazin-6-one | KI | 0.55 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-5-methylpyridazin-3-yl]piperazin-2-one | KI | 0.56 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-3-methylpiperazin-2-one | KI | 0.58 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 7-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyrazine | KI | 0.6 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-4-methylpyridazin-3-yl]piperazin-2-one | KI | 0.63 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(5-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyrido[2,3-d]pyridazin-8-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-one | KI | 0.64 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(2-morpholinoethyl)piperazin-2-one | KI | 0.67 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-ethyl-1,2,5,6-tetrahydropyridine-3-carboxamide | KI | 0.67 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| Halcion | KI | 0.68 nM | |
| (9aR)-8-[6-[[5-chloro-3-[4-(difluoromethyl)phenyl]triazol-4-yl]methoxy]pyridazin-3-yl]-1,3,4,7,9,9a-hexahydropyrazino[2,1-c][1,4]oxazin-6-one | KI | 0.71 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 3-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)-6-(5,6-dihydro-2H-pyran-3-yl)pyridazine | KI | 0.75 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-7,8,9,10-tetrahydro-5H-pyrazino[1,2-a]pyrido[3,2-e]pyrazin-6(6aH)-one | KI | 0.8 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(1-methyl-1H-pyrazol-3-yl)piperazin-2-one | KI | 0.81 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-(hydroxymethyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 0.82 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-1H-pyrazino[1,2-a]pyrazin-4-(6H)-one | KI | 0.84 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1H-2-imidazolyl[6-phenyl-4,5,7,8-tetraazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraen-9-yloxy]methane | KI | 0.87 nM | |
| 7-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-4,7-diazaspiro[2.5]octan-5-one | KI | 0.89 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N,N-dimethylpyrrolidin-3-amine | KI | 0.89 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-methylhexahydro-1H-pyrazino[1,2-a]pyrazin-4(6H)-one | KI | 0.9 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6-methylpiperazin-2-one | KI | 0.91 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(1-methyl-1H-pyrazol-4-yl)piperazin-2-one | KI | 0.93 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazine-2,6-dione | KI | 0.96 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((4-(Difluoromethyl)-1-(4-(difluoromethyl)phenyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 0.96 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6,6-dimethylpiperazin-2-one | KI | 1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-4-methoxypyridazin-3-yl]piperazin-2-one | KI | 1.05 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-1-yl)ethan-1-one | KI | 1.07 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)-2-fluorophenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 1.08 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-phenylazetidine-3-carboxamide | KI | 1.1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(pyridin-4-yl)azetidine-3-carboxamide | KI | 1.1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-(pyrimidin-2-ylmethyl)octahydro-4H-pyrazino[1,2-a]pyrazin-4-one | KI | 1.1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(Cyclopropylmethyl)-4-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 1.11 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(5-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyrazin-2-yl)piperazin-2-one | KI | 1.11 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-(2,2,2-trifluoroethyl)octahydro-4H-pyrazino[1,2-a]pyrazin-4-one | KI | 1.13 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(1-methyl-1H-pyrazol-3-yl)azetidine-3-carboxamide | KI | 1.15 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(1-(Difluoromethyl)-1H-pyrazol-4-yl)-4-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 1.17 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(2,2,2-trifluoroethyl)piperazin-2-one | KI | 1.18 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-3H-imidazo[5,1-c][1,4]oxazin-3-one | KI | 1.19 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(6-((4-Chloro-1-(4-(difluoromethyl)phenyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-one | KI | 1.21 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-2-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydropyrrolo[1,2-a]pyrazin-4(1H)-one | KI | 1.24 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-[(1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy]pyridin-3-yl)piperazin-2-one | KI | 1.24 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 9-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6-oxa-2-thia-9-azaspiro[4.5]decane 2,2-dioxide | KI | 1.24 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-ethyl-2-azabicyclo[2.1.1]hexane-1-carboxamide | KI | 1.25 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (3S,9aR)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)tetrahydro-1H-3,9a-methanopyrazino[2,1-c][1,4]oxazin-6(7H)-one | KI | 1.26 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(1-methyl-1H-pyrazol-4-yl)azetidine-3-carboxamide | KI | 1.27 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
ChEMBL bioactivities
3874 potent at pChembl≥5 of 4004 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.70 | Ki | 0.02 | nM | CHEMBL3144696 |
| 10.52 | Ki | 0.03 | nM | CHEMBL3144849 |
| 10.40 | Ki | 0.04 | nM | CHEMBL3144849 |
| 10.30 | Ki | 0.05 | nM | CGS-8216 |
| 10.30 | Ki | 0.05 | nM | CHEMBL4243764 |
| 10.22 | Ki | 0.06 | nM | CHEMBL3144696 |
| 10.22 | Ki | 0.06 | nM | CHEMBL4243764 |
| 10.15 | Ki | 0.07 | nM | CHEMBL3144849 |
| 10.10 | Ki | 0.08 | nM | CHEMBL3144696 |
| 10.10 | Ki | 0.08 | nM | CGS-8216 |
| 10.10 | Ki | 0.08 | nM | CHEMBL4243764 |
| 10.05 | Ki | 0.09 | nM | CHEMBL3144841 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL454349 |
| 10.00 | Ki | 0.1 | nM | CHEMBL436768 |
| 10.00 | Ki | 0.1 | nM | CHEMBL202696 |
| 10.00 | Ki | 0.1 | nM | CHEMBL203286 |
| 10.00 | Ki | 0.1 | nM | CHEMBL378761 |
| 10.00 | Ki | 0.1 | nM | CHEMBL211704 |
| 10.00 | Ki | 0.1 | nM | CHEMBL3144841 |
| 9.96 | Ki | 0.11 | nM | CHEMBL380110 |
| 9.96 | Ki | 0.11 | nM | CHEMBL3144841 |
| 9.92 | Ki | 0.12 | nM | CHEMBL199957 |
| 9.92 | Ki | 0.12 | nM | CHEMBL4476044 |
| 9.92 | Ki | 0.12 | nM | CHEMBL3144615 |
| 9.92 | Ki | 0.12 | nM | CGS-8216 |
| 9.92 | Ki | 0.12 | nM | CHEMBL4243764 |
| 9.85 | Ki | 0.14 | nM | CHEMBL383677 |
| 9.85 | Ki | 0.14 | nM | CHEMBL212008 |
| 9.85 | Ki | 0.14 | nM | CHEMBL225631 |
| 9.85 | Ki | 0.14 | nM | CHEMBL1644826 |
| 9.85 | Ki | 0.14 | nM | CHEMBL130609 |
| 9.85 | Ki | 0.14 | nM | CHEMBL10483 |
| 9.82 | Ki | 0.15 | nM | CHEMBL202343 |
| 9.82 | Ki | 0.15 | nM | CHEMBL206587 |
| 9.82 | Ki | 0.15 | nM | CHEMBL300615 |
| 9.80 | IC50 | 0.16 | nM | CHEMBL309517 |
| 9.80 | Ki | 0.16 | nM | CHEMBL206380 |
| 9.77 | Ki | 0.17 | nM | CHEMBL375742 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3144849 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3144615 |
| 9.77 | Ki | 0.17 | nM | CHEMBL299210 |
| 9.74 | Ki | 0.18 | nM | DARIGABAT |
| 9.74 | Ki | 0.18 | nM | CHEMBL323805 |
| 9.74 | Ki | 0.18 | nM | CHEMBL3144698 |
| 9.72 | Ki | 0.19 | nM | CHEMBL361129 |
| 9.72 | Ki | 0.19 | nM | CHEMBL206380 |
| 9.72 | Ki | 0.19 | nM | CHEMBL4436326 |
| 9.70 | Ki | 0.2 | nM | CHEMBL178677 |
| 9.70 | Ki | 0.2 | nM | MK-0777 |
| 9.70 | Ki | 0.2 | nM | CHEMBL381380 |
PubChem BioAssay actives
3443 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-(4-ethynylphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 73089: Binding affinity to human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-2-beta-3-gamma-2 | ki | <0.0001 | uM |
| 8-ethynyl-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2 | ki | <0.0001 | uM |
| 8-methoxy-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0001 | uM |
| 2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 40988: Inhibition on Benzodiazepine receptor | ic50 | 0.0001 | uM |
| 5-fluoro-2-[2-fluoro-5-[7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]benzonitrile | 259132: Displacement of [3H]Ro-151788 from human recombinant GABAA alpha5 in combination with beta3gamma2 expressed in L(tk-) cells | ki | 0.0001 | uM |
| 8-chloro-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2 | ki | 0.0001 | uM |
| tert-butyl 8-hydroxy-5-methyl-6-oxo-4H-imidazo[1,5-a][1,4]benzodiazepine-3-carboxylate | 73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2 | ki | 0.0001 | uM |
| 3-phenyl-6-(pyridazin-3-ylmethoxy)-[1,2,4]triazolo[3,4-a]phthalazine | 72625: Binding affinity for human GABA-A receptor alpha-5-beta-3-gamma-2 subunits in L(tk-) cells | ki | 0.0001 | uM |
| 2-[5-(7-ethyl-8-oxoimidazo[1,2-a]pyrazin-3-yl)-2-fluorophenyl]-5-fluorobenzonitrile | 262297: Displacement of [3H]Ro-151788 from human recombinant GABA-Aalpha5 receptor plus beta3gamma2 | ki | 0.0001 | uM |
| 3,5-difluoro-2-[2-fluoro-5-[3-(2-hydroxypropan-2-yl)imidazo[1,2-b][1,2,4]triazin-7-yl]phenyl]benzonitrile | 260334: Displacement of [3H]Ro 15-1788 from recombinant human GABAA alpha-1 receptor plus beta3gamma2 expressed in L(tk-) cells | ki | 0.0001 | uM |
| 7-tert-butyl-6-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-phenyl-[1,2,4]triazolo[4,3-b]pyridazine | 282667: Displacement of [3H]Ro 15-1788 from human recombinant GABAA alpha-3-beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 3-(2,6-difluorophenyl)-5-[4-fluoro-3-(3-fluoro-2-pyridinyl)phenyl]pyridazine | 262644: Displacement of [3H]Ro-151788 from recombinant human GABA-Aalpha1 receptor plus beta3gamma2 | ki | 0.0001 | uM |
| ethyl 6-methoxy-4-(methoxymethyl)-9H-pyrido[3,4-b]indole-3-carboxylate | 219791: Binding affinity measured using LtK- cell membranes expressing GABA alpha-1-beta-3-gamma-2 receptor | ki | 0.0001 | uM |
| 2-(4-methylphenyl)-9-(2-thiophen-3-ylethyl)-6H-[1,2,4]triazolo[4,3-c]quinazoline-3,5-dione | 552801: Displacement of [3H]flumazenil human recombinant alpha1beta3gamma2 GABA(A) receptor expressed in HEK293 cells after 30 mins by glass fiber filtration assay | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-thiophen-3-ylpyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 2-[3-[5-(2-hydroxypropan-2-yl)benzimidazol-1-yl]phenyl]benzonitrile | 1604549: Displacement of [3H]-Ro15-1788 from human GABAA alpha5beta3gamma2 expressed in HEK293 cell membranes incubated for 40 or 90 mins by liquid scintillation counting method | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-3-(furan-2-yl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]pyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-thiophen-2-ylpyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 2-phenyl-3aH-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0001 | uM |
| 8-bromo-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0001 | uM |
| 4-[2-fluoro-5-[7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]pyridine-3-carbonitrile | 262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cells | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-pyridin-4-ylpyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 2-[2-fluoro-5-[8-fluoro-7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyridin-3-yl]phenyl]benzonitrile | 262219: Displacement of [3H]Ro 15-1788 from human GABA-Aalpha1 receptor plus beta-3-gamma-2 expressed in mouse L(tk-) cells | ki | 0.0002 | uM |
| 8-chloro-2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 1388015: Displacement of [3H]Ro15-1788 from human GABAA receptor alpha1beta3gamma2 expressed in LTK cells preincubated for 30 secs measured every 15 mins at -60 mV holding potential by two-electrode voltage clamp assay | ki | 0.0002 | uM |
| tert-butyl (7S)-14-bromo-12-oxo-2,4,11-triazatetracyclo[11.4.0.02,6.07,11]heptadeca-1(17),3,5,13,15-pentaene-5-carboxylate | 73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2 | ki | 0.0002 | uM |
| 6-phenyl-9-[(2-propyl-1,2,4-triazol-3-yl)methoxy]-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene | 239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cells | ki | 0.0002 | uM |
| 9-[(1-benzylimidazol-2-yl)methoxy]-6-phenyl-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene | 239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cells | ki | 0.0002 | uM |
| 6-[(1-methylimidazol-2-yl)methoxy]-3-phenyl-[1,2,4]triazolo[3,4-a]phthalazine | 72620: Binding affinity for human GABA-A receptor alpha-3-beta-3-gamma-2 subunits in L(tk-) cells | ki | 0.0002 | uM |
| 9-[(3,5-dimethyl-2-pyridinyl)methoxy]-6-phenyl-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene | 239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cells | ki | 0.0002 | uM |
| ethyl 15-methoxy-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| ethyl 4-(methoxymethyl)-5-phenylmethoxy-9H-pyrido[3,4-b]indole-3-carboxylate | 1932290: Displacement of [3H]flunitrazepam from GABAA (unknown origin ) receptor by radioligand binding assay | ic50 | 0.0002 | uM |
| 2-(4-chlorophenyl)-6,7,8,9-tetrahydro-1H-pyrazolo[4,3-c]quinolin-3-one | 221780: In vitro binding affinity against gamma-aminobutyric acid A receptor, alpha 1 expressed in L(tk) cells by displacement of [3H]Ro-151788 | ki | 0.0002 | uM |
| 2-(4-bromophenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0002 | uM |
| 3-(2,5-difluorophenyl)-7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]pyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0002 | uM |
| 3-(15-fluoro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaen-5-yl)-5-methyl-1,2,4-oxadiazole | 468635: Displacement of [3H]Flumazenil from cloned human GABA alpha-5-beta-3-gamma-2 receptor expressed in HEK293 cells | ki | 0.0002 | uM |
| ethyl 2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(17),3,5,9,11,13,15-heptaene-5-carboxylate | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| ethyl 15-chloro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| ethyl 15-fluoro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate | 468641: Displacement of [3H]Flumazenil from human GABA alpha-5-beta-3-gamma-2 receptor expressed in insect SF9 cells | ki | 0.0002 | uM |
| 7-cyclobutyl-3-(2,6-difluorophenyl)-6-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-[1,2,4]triazolo[4,3-b]pyridazine | 1604538: Displacement of [3H]-flumazenil from human GABAA alpha1beta3gamma2 expressed in Ltk cells | ki | 0.0002 | uM |
| 15-(4-chlorophenyl)-13-(4-methyl-1,3-thiazol-2-yl)-4,11-diazatricyclo[9.4.0.02,7]pentadeca-1(15),2(7),3,5,13-pentaen-12-one | 72914: Displacement of [3H]Ro-151788 from human GABA-A receptor alpha-1-beta-3-gamma-2 subunits expressed in L(tk) cells | ki | 0.0002 | uM |
| 2-(4-chlorophenyl)-8-(pyridin-4-ylmethyl)-1,5a,6,7,9,9a-hexahydropyrazolo[4,3-c][1,6]naphthyridin-3-one | 221780: In vitro binding affinity against gamma-aminobutyric acid A receptor, alpha 1 expressed in L(tk) cells by displacement of [3H]Ro-151788 | ki | 0.0002 | uM |
| 3-fluoro-2-[2-fluoro-5-(7-methyl-8-oxoimidazo[1,2-a]pyrazin-3-yl)phenyl]benzonitrile | 262295: Displacement of [3H]Ro-151788 from human recombinant GABA-Aalpha1 receptor plus beta3gamma2 | ki | 0.0002 | uM |
| 5-ethoxy-2,4,8,9-tetrazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(17),3,5,9,11,13,15-heptaene | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| 7-ethyl-4-[3-(4-ethylsulfonyl-2-methoxyphenyl)-4-fluorophenyl]imidazo[4,5-c]pyridazine | 1553920: Displacement of [3H]-flumazenil from human GABAA alpha1beta3gamma2 receptor expressed in HEK293 cell membranes measured after 2 hrs by liquid scintillation counting method | ki | 0.0002 | uM |
| 4-[2-fluoro-5-[3-(2-hydroxypropan-2-yl)imidazo[1,2-b][1,2,4]triazin-7-yl]phenyl]pyridine-3-carbonitrile | 262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cells | ki | 0.0003 | uM |
| 4-fluoro-2-[2-fluoro-5-[7-(trifluoromethyl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]benzonitrile | 259132: Displacement of [3H]Ro-151788 from human recombinant GABAA alpha5 in combination with beta3gamma2 expressed in L(tk-) cells | ki | 0.0003 | uM |
| 2-[3-(4-fluoro-3-pyridin-4-ylphenyl)imidazo[1,2-a]pyrimidin-7-yl]propan-2-ol | 262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cells | ki | 0.0003 | uM |
| 7-methoxy-2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0003 | uM |
| tert-butyl 8-azido-5-methyl-6-oxo-4H-imidazo[1,5-a][1,4]benzodiazepine-3-carboxylate | 73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2 | ki | 0.0003 | uM |
| ethyl (7S)-14-bromo-11-oxo-2,4,10-triazatetracyclo[10.4.0.02,6.07,10]hexadeca-1(16),3,5,12,14-pentaene-5-carboxylate | 73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2 | ki | 0.0003 | uM |
CTD chemical–gene interactions
66 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression, increases methylation, affects cotreatment | 8 |
| gamma-Aminobutyric Acid | affects binding, increases activity, increases reaction, affects cotreatment, decreases reaction (+1 more) | 6 |
| methylmercuric chloride | increases expression, affects cotreatment | 4 |
| fipronil | decreases activity, affects binding, decreases reaction | 4 |
| 1-(4-ethynylphenyl)-4-propyl-2,6,7-trioxabicyclo(2.2.2)octane | affects binding, decreases activity, decreases reaction, increases reaction | 4 |
| Hexachlorocyclohexane | affects binding, decreases reaction, increases activity, increases reaction | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| loreclezole | increases transport, affects binding, affects cotreatment, increases activity, increases reaction (+1 more) | 3 |
| Endosulfan | decreases reaction, affects binding | 3 |
| Propofol | affects cotreatment, affects binding, decreases reaction, increases activity, increases reaction (+1 more) | 3 |
| picrotoxinin | affects binding, decreases reaction, increases activity, increases response to substance | 2 |
| tert-butylbicyclophosphorothionate | affects binding, decreases reaction | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| entinostat | affects cotreatment, decreases expression, increases expression | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Vorinostat | decreases expression, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Flunitrazepam | affects binding, increases reaction, increases activity, affects reaction | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| Particulate Matter | affects methylation, decreases expression, increases methylation | 2 |
| 4-chloro-N-(2-(2-thienyl)imidazo(1,2-a)pyridin-3-yl)benzamide | affects binding, increases activity | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| tetramethylenedisulfotetramine | increases response to substance, affects binding, decreases reaction, increases activity | 1 |
| sodium arsenite | affects methylation | 1 |
| butyraldehyde | decreases expression | 1 |
| CL 218872 | affects binding, increases activity | 1 |
| benzamide | increases reaction, affects binding, increases activity | 1 |
| alpha-hexachlorocyclohexane | increases reaction, affects binding, decreases reaction, increases activity | 1 |
| Ro 15-4513 | affects binding, increases activity, increases reaction | 1 |
ChEMBL screening assays
887 unique, capped per target: 722 binding, 156 functional, 6 admet, 3 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2167730 | Binding | Inhibition of [3H]R-(-)-14-induced receptor photolabeling at human FLAG-tagged beta3 GABA A receptor expressed in HEK293S cells at 200 uM relative to untreated control | Allyl m-trifluoromethyldiazirine mephobarbital: an unusually potent enantioselective and photoreactive barbiturate general anesthetic. — J Med Chem |
| CHEMBL4810229 | ADMET | Inhibition of GABA A receptor (unknown origin) at 0.1 to 1 uM | Discovery of Pemigatinib: A Potent and Selective Fibroblast Growth Factor Receptor (FGFR) Inhibitor. — J Med Chem |
| CHEMBL5335653 | Toxicity | Antagonist activity at GABA-A (unknown origin) | Discovery of a Novel Bifunctional Steroid Analog, YXG-158, as an Androgen Receptor Degrader and CYP17A1 Inhibitor for the Treatment of Enzalutamide-Resistant Prostate Cancer. — J Med Chem |
Cellosaurus cell lines
8 cell lines: 6 transformed cell line, 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1JK | PrecisION hGABAA alpha1/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_D1JL | PrecisION hGABAA alpha3/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_D1JM | PrecisION hGABAA alpha4/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_D1JN | PrecisION hGABAA alpha5/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_D1JP | PrecisION hGABAA alpha6/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_D1KP | PrecisION hGABAA alpha2/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_SP45 | HAP1 GABRB3 (-) 1 | Cancer cell line | Male |
| CVCL_SP46 | HAP1 GABRB3 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
375 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01370486 | PHASE4 | WITHDRAWN | Melatonin Versus Placebo in the Lennox-Gastaut Syndrome: Neurophysiological and Neuropsychological Effects |
| NCT02731300 | PHASE4 | COMPLETED | Transcranial Direct Current Stimulation, Treatment of Childhood Drug-Resistant Lennox-Gastaut Syndrome, A Pilot Study |
| NCT04133480 | PHASE4 | WITHDRAWN | Investigation of Cognitive Outcomes With Cannabidiol Oral Solution |
| NCT05044819 | PHASE4 | ACTIVE_NOT_RECRUITING | Assessment of Potential for Chronic Liver Injury in Participants Treated With Epidiolex (Cannabidiol) Oral Solution |
| NCT06924827 | PHASE4 | NOT_YET_RECRUITING | A Study to Investigate the Transition of Children From ‘Artisanal Cannabidiol (CBD) to Epidiolex |
| NCT00124384 | PHASE4 | COMPLETED | The Effects of Modafinil on Waking Function and on Sleep in Individuals With Primary Insomnia |
| NCT00156533 | PHASE4 | COMPLETED | Long Term Treatment With Zolpidem: Nightly and Intermittent Dosing |
| NCT00178048 | PHASE4 | COMPLETED | Paroxetine in the Treatment of Chronic Primary Insomnia |
| NCT00235508 | PHASE4 | COMPLETED | Safety and Efficacy of Eszopiclone in Patients With Generalized Anxiety Disorder |
| NCT00252278 | PHASE4 | UNKNOWN | Effect of Atomoxetine on ADHD-Related Insomnia in Children and Adolescents |
| NCT00283790 | PHASE4 | COMPLETED | Residual Effects of Zolpidem Tartrate Extended Release and Eszopiclone Vs Placebo |
| NCT00287391 | PHASE4 | COMPLETED | Sleep Disorders and Gastroesophageal Reflux Disease (GERD) |
| NCT00295386 | PHASE4 | COMPLETED | Cognitive-Behavioural and Hypnotic Treatment of Chronic Primary Insomnia Among the Elderly |
| NCT00296179 | PHASE4 | COMPLETED | Ambien CR For Treatment Of Insomnia Associated With Depression When Used Concomitantly With Lexapro |
| NCT00296790 | PHASE4 | COMPLETED | Ambien CR vs. Placebo For Treatment Of Insomnia Associated With Anxiety When Used Concomitantly With Escitalopram (Lexapro) |
| NCT00337272 | PHASE4 | TERMINATED | Treating Chronic Insomnia in Breast Cancer Patients |
| NCT00359229 | PHASE4 | COMPLETED | Stilnox Treatment in Elderly Patients With Insomnia |
| NCT00365976 | PHASE4 | COMPLETED | Study of the Insomnia in Patients With Low Back Pain |
| NCT00386334 | PHASE4 | COMPLETED | A Long-Term Safety and Efficacy Study of Eszopiclone in Elderly With Primary Chronic Insomnia |
| NCT00392041 | PHASE4 | COMPLETED | Eszopiclone in the Treatment of Insomnia and Fibromyalgia |
| NCT00414037 | PHASE4 | TERMINATED | How do Sleeping Pills Affect Pain in the Brain? |
| NCT00414102 | PHASE4 | COMPLETED | Subjective Efficacy of Ramelteon on Sleep in Adults With Chronic Insomnia. |
| NCT00432198 | PHASE4 | COMPLETED | Zolpidem Postmarketing Study in Adolescent Patients With Insomnia |
| NCT00465972 | PHASE4 | COMPLETED | The Treatment of Insomnia in Patients With HIV Disease |
| NCT00492232 | PHASE4 | COMPLETED | Facilitation of Zolpidem (≥10 mg) Discontinuation Through Use of Ramelteon in Subjects With Chronic Insomnia |
| NCT00507546 | PHASE4 | COMPLETED | Functional Melatonin Replacement for Sleep Disruptions in Individuals With Tetraplegia |
| NCT00511134 | PHASE4 | TERMINATED | Study of Lunesta Versus Placebo for Sleep Problems Related to Smoking Cessation and Zyban |
| NCT00566371 | PHASE4 | COMPLETED | The Effect of a Once Daily Dose of Atomoxetine (ATX) on ADHD-Related Insomnia in Children and Adolescents |
| NCT00568789 | PHASE4 | COMPLETED | Safety of Ramelteon in Elderly Subjects |
| NCT00626210 | PHASE4 | TERMINATED | Modafinil Treatment for Sleep/Wake Disturbances in Older Adults |
| NCT00628914 | PHASE4 | UNKNOWN | Brain Mechanisms and Targeting Insomnia in Major Depression |
| NCT00653562 | PHASE4 | COMPLETED | Zolpidem (Myslee) Post Marketing Study in Adolescent Patients With Insomnia - Evaluation With Polysomnography |
| NCT00666796 | PHASE4 | COMPLETED | A Study to Assess the Pharmacodynamic Interaction Between Gabapentin and Ethanol in Healthy Subjects |
| NCT00723970 | PHASE4 | COMPLETED | Quetiapine Extended Release (XR) for the Treatment of Menopausal Depression |
| NCT00724282 | PHASE4 | COMPLETED | Treatment of Insomnia and Glucose Metabolism |
| NCT00812214 | PHASE4 | COMPLETED | Treatment of Insomnia in Migraineurs |
| NCT00813735 | PHASE4 | COMPLETED | Eszopiclone Co-Administered With Escitalopram for Insomnia in Elderly Adults With Major Depressive Disorder |
| NCT00826111 | PHASE4 | COMPLETED | The Effects of Eszopiclone and Lexapro on Prefrontal Glutamate and GABA in Depression With Anxiety and Insomnia |
| NCT00869934 | PHASE4 | COMPLETED | Cognitive-Behavior Therapy for Insomnia |
| NCT00889200 | PHASE4 | COMPLETED | Eszopiclone Treatment & Cortisol Responsivity |
Related Atlas pages
- Associated diseases: developmental and epileptic encephalopathy, 43, genetic developmental and epileptic encephalopathy, epilepsy, childhood absence, susceptibility to, 5, Lennox-Gastaut syndrome, childhood absence epilepsy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): childhood absence epilepsy, developmental and epileptic encephalopathy, 1, developmental and epileptic encephalopathy, 43, epilepsy, childhood absence, susceptibility to, 1, epilepsy, childhood absence, susceptibility to, 5, genetic developmental and epileptic encephalopathy, insomnia, Lennox-Gastaut syndrome, myoepithelial tumor