GABRB3

gene
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Summary

GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3, HGNC:4083) is a protein-coding gene on chromosome 15q12, encoding Gamma-aminobutyric acid receptor subunit beta-3 (P28472). Beta subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain.

This gene encodes a member of the ligand-gated ionic channel family. The encoded protein is one the subunits of a multi-subunit chloride channel that serves as the receptor for gamma-aminobutyric acid, a major inhibitory neurotransmitter of the mammalian nervous system. This gene is located on the long arm of chromosome 15 in a cluster with two other genes encoding related subunits of the family. This gene may be associated with the pathogenesis of several disorders including Angelman syndrome, Prader-Willi syndrome, nonsyndromic orofacial clefts, epilepsy and autism. Alternatively spliced transcript variants encoding distinct isoforms have been described.

Source: NCBI Gene 2562 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): genetic developmental and epileptic encephalopathy (Definitive, ClinGen) — +4 more curated relationships
  • GWAS associations: 10
  • Clinical variants (ClinVar): 781 total — 47 pathogenic, 46 likely-pathogenic
  • Phenotypes (HPO): 58
  • Druggable target: yes — 32 molecules with ChEMBL bioactivity
  • Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
  • MANE Select transcript: NM_000814

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:4083
Approved symbolGABRB3
Namegamma-aminobutyric acid type A receptor subunit beta3
Location15q12
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000166206
Ensembl biotypeprotein_coding
OMIM137192
Entrez2562

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 12 protein_coding_CDS_not_defined, 7 protein_coding, 4 nonsense_mediated_decay, 1 retained_intron

ENST00000299267, ENST00000311550, ENST00000400188, ENST00000541819, ENST00000545868, ENST00000554556, ENST00000554722, ENST00000555094, ENST00000555632, ENST00000556166, ENST00000556636, ENST00000557641, ENST00000557765, ENST00000621499, ENST00000635832, ENST00000635994, ENST00000636466, ENST00000636512, ENST00000636690, ENST00000637226, ENST00000637293, ENST00000637893, ENST00000638099, ENST00000638149

RefSeq mRNA: 5 — MANE Select: NM_000814 NM_000814, NM_001191320, NM_001191321, NM_001278631, NM_021912

CCDS: CCDS10018, CCDS10019, CCDS53920, CCDS53921

Canonical transcript exons

ENST00000311550 — 9 exons

ExonStartEnd
ENSE000022093802654355226548134
ENSE000025105022677288326773066
ENSE000034718652658333226583414
ENSE000034776102677240226772469
ENSE000035771962658031926580456
ENSE000035780062677268126772772
ENSE000036425562656758126567733
ENSE000036483182656093226561176
ENSE000036731072662131426621534

Expression profiles

Bgee: expression breadth ubiquitous, 219 present calls, max score 98.03.

FANTOM5 (CAGE): breadth broad, TPM avg 5.1029 / max 118.0079, expressed in 590 samples.

FANTOM5 promoters (10 alternative TSS)

Promoter IDTPM avgSamples expressed
1490323.5849389
1490340.7019204
1490280.4361199
1490330.168856
1490270.063224
1490300.053621
1490290.047717
1490360.031816
1490390.01194
1490380.00293

Top tissues by expression

289 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
middle temporal gyrusUBERON:000277198.03gold quality
cortical plateUBERON:000534397.24gold quality
Brodmann (1909) area 23UBERON:001355496.85gold quality
entorhinal cortexUBERON:000272896.51gold quality
endothelial cellCL:000011595.63gold quality
parietal lobeUBERON:000187295.17gold quality
postcentral gyrusUBERON:000258194.93gold quality
superior frontal gyrusUBERON:000266194.93gold quality
lateral nuclear group of thalamusUBERON:000273693.84gold quality
islet of LangerhansUBERON:000000693.35gold quality
prefrontal cortexUBERON:000045192.00gold quality
occipital lobeUBERON:000202191.99gold quality
primary visual cortexUBERON:000243691.65gold quality
lateral globus pallidusUBERON:000247691.00gold quality
nucleus accumbensUBERON:000188290.97gold quality
dorsolateral prefrontal cortexUBERON:000983490.95gold quality
frontal cortexUBERON:000187090.87gold quality
frontal lobeUBERON:001652590.86gold quality
cerebral cortexUBERON:000095690.38gold quality
ganglionic eminenceUBERON:000402390.27gold quality
neocortexUBERON:000195090.16gold quality
right frontal lobeUBERON:000281089.95gold quality
temporal lobeUBERON:000187189.84gold quality
telencephalonUBERON:000189389.62gold quality
Brodmann (1909) area 9UBERON:001354089.33gold quality
forebrainUBERON:000189088.89gold quality
Ammon’s hornUBERON:000195488.55gold quality
brainUBERON:000095587.86gold quality
caudate nucleusUBERON:000187387.64gold quality
cerebellar cortexUBERON:000212987.56gold quality

Single-cell (SCXA)

Detected in 10 experiment(s), a significant marker in 7.

ExperimentMarker?Max mean expression
E-HCAD-35yes91.41
E-HCAD-25yes88.56
E-GEOD-137537yes13.75
E-MTAB-5061yes13.35
E-GEOD-81547yes7.51
E-ANND-3yes6.35
E-GEOD-81608yes5.40
E-CURD-11no115.48
E-GEOD-83139no4.01
E-MTAB-4850no0.80

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ATOH7, EGR3, FOSL1, HOXD3, JUND, MEF2A, MYOD1, NR1I3, PITX2, REST, SP1, TCF12, TCF3

miRNA regulators (miRDB)

183 targeting GABRB3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-6867-5P100.0082.213464
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-3924100.0072.092394
HSA-MIR-3646100.0073.565283
HSA-MIR-4425100.0067.591049
HSA-MIR-3163100.0077.238605
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-4692100.0067.322066
HSA-LET-7A-3P100.0074.033932
HSA-LET-7B-3P100.0074.083913
HSA-LET-7F-1-3P100.0074.023928
HSA-MIR-98-3P100.0074.083907
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-511-3P99.9968.851467
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-4789-3P99.9970.752484
HSA-MIR-366299.9973.825684
HSA-MIR-451499.9967.101870
HSA-MIR-1213699.9872.815713
HSA-MIR-4789-5P99.9870.762721
HSA-MIR-480399.9871.993117
HSA-MIR-548P99.9872.253784
HSA-MIR-4650-5P99.9864.69999
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-314899.9775.066478

Functional genomics

ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • linkage disequilibrium in cleft lip +/- cleft palate (PMID:11810291)
  • Association between a GABRB3 polymorphism and autism (PMID:11920158)
  • The presence of inherited insomnia in the family of the affected individual suggests a possible link between insomnia and the mutation beta3(R192H). (PMID:12189488)
  • modeling of molecular configuration (PMID:12225856)
  • using full-length or truncated chimeric subunits it was demonstrated that homologous sequences from beta 3 are important for assembly of GABA(A) receptors composed of alpha(1), beta(3), and gamma(2) subunits (PMID:12367595)
  • Lack of anomalies in 15q11-q13 region may be related to small number of probands, heterogenity of studied group, and small number of studied loci and markers. (PMID:12491987)
  • This report indicates pronounced adaptive changes in the expression of these GABA(A) receptor subunits related to seizure activity and indicates altered assembly of GABA(A) receptors in temporal lobe epilepsy. (PMID:14503638)
  • No significant difference in mRNA expression is found between the control and alcoholic case groups in either the superior frontal or motor cortex for the GABA A beta 3 isoform (PMID:15337300)
  • Reduced expression of GABRB3 is associated with Rett, Angelman and autism (PMID:15615769)
  • the expression of the GABAA receptor pi subunit may play an important role in the pathogenesis of pancreatic cancer (PMID:15767729)
  • Our data indicated that the haplotype ‘GACTCT’ (p = 0.00215, frequency = 53.6%) was overtransmitted which suggests that GABRB2 is in linkage disequilibrium with schizophrenia in the Chinese Han population. (PMID:16023997)
  • Reduced expression of the GABRB3 gene could therefore be one potential cause for the development of Childhood Absence Epilepsy. (PMID:16835263)
  • alpha4beta3gamma2L receptors have unique kinetic properties that limit the range of GABA applications to which they can respond maximally. (PMID:17124266)
  • study failed to replicate an association of the common GABRB3 exon 1a promoter SNP rs4906902 with childhood absence epilepsy. no evidence that the common functional C-variant confers a substantial epileptogenic effect to a broad spectrum of IGE syndromes (PMID:17215107)
  • Altered crosstalk between RA, GABAergic, and TGF-beta signaling systems could be involved in human cleft palate fibroblast phenotype. (PMID:17225872)
  • finding suggested that single-nucleotide polymorphisms in GABRB3 may play a significant role in the genetic predisposition to autism spectrum disorders in the Korean population (PMID:17230033)
  • The results indicate that human hepatocellular carcinoma (HCC) tissues are depolarized compared with adjacent nontumor tissues, and hepatic GABAA-beta3 receptor expression is down-regulated in human HCC. (PMID:17326191)
  • These results suggest that MeCP2 acts as a chromatin organizer for optimal expression of both alleles of GABRB3 in neurons. (PMID:17339270)
  • Subjects with schizophrenia exhibited expression deficits in GABRB3. (PMID:17471287)
  • study found mutations of GABRA1, GABRB3, and GABRG2 appear not to play a major role in the development of familial primary dystonia (PMID:17880575)
  • observed no significant difference in allelic frequencies or genotypic distributions of the 11 SNPs of intron 3 of GABRB3 between patients and controls (PMID:17957331)
  • In the SNr GABA(A) receptors contain alpha(1), alpha(3), beta(2,3), and gamma(2) subunits and are localized in a weblike network over the cell soma, dendrites, and spines of SNr parvalbumin-positive nonpigmented neurons. (PMID:18085588)
  • histamine modulates heteromultimeric GABA(A) receptors and may thus represent an endogenous ligand for an allosteric site (PMID:18281286)
  • The G1- alleles of the GABRB3 in children of alcoholics were significantly higher than nonCOAs. (PMID:18358985)
  • gene is involved in the pathogenesis of cleft lip with or without cleft palate in the Japanese population (PMID:18452349)
  • Mutated GABRB3 could cause absence seizures through a gain in glycosylation of mutated exon 1a and exon 2, affecting maturation and trafficking of GABAR from endoplasmic reticulum to cell surface and resulting in reduced GABA-evoked currents. (PMID:18514161)
  • three distinct sets of amino acid residues in the N-terminal extracellular domain of the hbeta1 subunit, which when mutated to the homologous residue in hbeta3 allow expression as a functional homomeric receptor (PMID:18650446)
  • Data show that GABRB3 is significantly altered in cerebellum and significant reductions in parietal cortex in subjects with autism. (PMID:18821008)
  • GABRB3 may contribute differently to the cleft phenotype in Iowans and in Filipinos, with a stronger effect in cases with palate involvement in Iowa, versus an effect in cases with involvement only of the lip in the Philippines. (PMID:18837046)
  • The data provide preliminary evidence that GABRB3 gene is associated with autism spectrum disorders in Korea. (PMID:19430570)
  • This study provides evidence of an association between a specific GABA(A) receptor defect and autism, direct evidence that this defect causes synaptic dysfunction that is autism relevant and maternal risk effect in the 15q11-q13 autism duplication region. (PMID:19935738)
  • Gaba (A) beta1 and beta3 receptor subunit mRNA levels in the dorsolateral prefrontal cortex are not altered in schizophrenia. (PMID:20843900)
  • Our data suggest the K289M mutation in gamma2 confers GABA(A)Rs with enhanced sensitivity of their membrane diffusion to neuronal activity (PMID:21908847)
  • In comparison to healthy donors, chronic hepatitis C patients were found to present an increase in the expression of gamma-aminobutyric acid A receptor alpha1 subunit and a decrease in the expression of beta3 subunit in their blood mononuclear leukocytes. (PMID:22080424)
  • Photoaffinity labeling and pepetide mapping data suggest that a homologous etomidate/general anesthetic binding site exists at the beta3-beta3 subunit interface in alpha1beta3 GABA receptor type A, specifically involving beta3-Met227. (PMID:22243422)
  • Our results suggest both a mechanism for mutation-induced hyperexcitability and a novel role for the GABRB3 subunit N-terminal alpha-helix in receptor assembly and gating. (PMID:22303015)
  • results provide additional evidence that GABRB3 and MAOB/NDP gene regions might constitute risk factors for hallucinations and delusions in schizophrenia. (PMID:22414661)
  • The haplotype of C-A in rs4906902 and rs8179184 loci in the promoter of GABRB3 gene may be maternally inherited and positively associated with schizophrenia. (PMID:22812221)
  • With a weak association, data do not support the hypothesis that the GABRB3 variants are a cause of nonsyndromic cleft lip and/or palate (PMID:23438326)
  • Specificity of intersubunit general anesthetic-binding sites in the transmembrane domain of the human alpha1beta3gamma2 gamma-aminobutyric acid type A (GABAA) receptor. (PMID:23677991)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriogabrb3ENSDARG00000023771
mus_musculusGabrb3ENSMUSG00000033676
rattus_norvegicusGabrb3ENSRNOG00000060599

Paralogs (45): GABRA3 (ENSG00000011677), GABRA1 (ENSG00000022355), CHRNA3 (ENSG00000080644), GABRP (ENSG00000094755), CHRNA4 (ENSG00000101204), GLRA2 (ENSG00000101958), GABRE (ENSG00000102287), CHRNE (ENSG00000108556), GABRA4 (ENSG00000109158), GLRB (ENSG00000109738), GABRR2 (ENSG00000111886), GABRG2 (ENSG00000113327), CHRNB4 (ENSG00000117971), CHRNA2 (ENSG00000120903), CHRNA10 (ENSG00000129749), CHRND (ENSG00000135902), CHRNA1 (ENSG00000138435), GLRA3 (ENSG00000145451), GABRA6 (ENSG00000145863), GABRB2 (ENSG00000145864), GLRA1 (ENSG00000145888), GABRR1 (ENSG00000146276), CHRNB3 (ENSG00000147432), CHRNA6 (ENSG00000147434), HTR3B (ENSG00000149305), GABRA2 (ENSG00000151834), CHRNB2 (ENSG00000160716), GABRG1 (ENSG00000163285), GABRB1 (ENSG00000163288), CHRFAM7A (ENSG00000166664), HTR3A (ENSG00000166736), CHRNA5 (ENSG00000169684), CHRNB1 (ENSG00000170175), CHRNA9 (ENSG00000174343), CHRNA7 (ENSG00000175344), HTR3C (ENSG00000178084), GABRG3 (ENSG00000182256), GABRR3 (ENSG00000183185), HTR3E (ENSG00000186038), HTR3D (ENSG00000186090)

Protein

Protein identifiers

Gamma-aminobutyric acid receptor subunit beta-3P28472 (reviewed: P28472)

Alternative names: GABA(A) receptor subunit beta-3

All UniProt accessions (8): A0A1B0GU30, A0A1B0GVW3, P28472, F5H7N0, G3V373, G3V4W7, H0YJU6, X5DQY4

UniProt curated annotations — full annotation on UniProt →

Function. Beta subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain. GABA-gated chloride channels, also named GABA(A) receptors (GABAAR), consist of five subunits arranged around a central pore and contain GABA active binding site(s) located at the alpha and beta subunit interface(s). GABAARs containing beta-3/GABRB3 subunit are found at both synaptic and extrasynaptic sites. When activated by GABA, GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Chloride influx into the postsynaptic neuron following GABAAR opening decreases the neuron ability to generate a new action potential, thereby reducing nerve transmission. GABAARs containing alpha-1 and beta-3 subunits exhibit synaptogenic activity; the gamma-2 subunit being necessary but not sufficient to induce rapid synaptic contacts formation. Extrasynaptic beta-3 receptors contribute to the tonic GABAergic inhibition. GABAARs containing alpha-1, beta-3 and epsilon subunits may also permit spontaneous chloride channel activity while preserving the structural information required for GABA-gated openings. Beta-containing GABAARs can simultaneously bind GABA and histamine where histamine binds at the interface of two neighboring beta subunits, which may be involved in the regulation of sleep and wakefulness. Plays an important role in somatosensation and in the production of antinociception.

Subunit / interactions. Heteropentamer, formed by a combination of alpha (GABRA1-6), beta (GABRB1-3), gamma (GABRG1-3), delta (GABRD), epsilon (GABRE), rho (GABRR1-3), pi (GABRP) and theta (GABRQ) chains, each subunit exhibiting distinct physiological and pharmacological properties. Can form functional homopentamers (in vitro). Interacts with UBQLN1. May interact with KIF21B. Identified in a complex of 720 kDa composed of LHFPL4, NLGN2, GABRA1, GABRB2, GABRG2 and GABRB3. Interacts with LHFPL4. Interacts with GIT1; this interaction is required for synaptic GABRB3 surface stability and inhibitory synapse strength.

Subcellular location. Postsynaptic cell membrane. Cell membrane. Cytoplasmic vesicle membrane.

Disease relevance. Epilepsy, childhood absence 5 (ECA5) [MIM:612269] A subtype of idiopathic generalized epilepsy characterized by an onset at age 6-7 years, frequent absence seizures (several per day) and bilateral, synchronous, symmetric 3-Hz spike waves on EEG. Tonic-clonic seizures often develop in adolescence. Absence seizures may either remit or persist into adulthood. Disease susceptibility is associated with variants affecting the gene represented in this entry. Developmental and epileptic encephalopathy 43 (DEE43) [MIM:617113] A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE43 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.

Activity regulation. Potentiated by histamine.

Domain organisation. GABAARs subunits share a common topological structure: a peptide sequence made up of a long extracellular N-terminal, four transmembrane domains, intracellular or cytoplasmic domain located between the third and the fourth transmembrane domains.

Polymorphism. GABRB3 variants may be associated with insomnia, a condition of inability to initiate or maintain sleep [MIM:137192].

Similarity. Belongs to the ligand-gated ion channel (TC 1.A.9) family. Gamma-aminobutyric acid receptor (TC 1.A.9.5) subfamily. GABRB3 sub-subfamily.

Isoforms (4)

UniProt IDNamesCanonical?
P28472-11yes
P28472-22
P28472-33
P28472-44

RefSeq proteins (5): NP_000805, NP_001178249, NP_001178250, NP_001265560, NP_068712 (=MANE)

Domains & families (InterPro)

IDNameType
IPR002289GABAAb_rcptFamily
IPR006028GABAA/Glycine_rcptFamily
IPR006029Neurotrans-gated_channel_TMDomain
IPR006201Neur_channelFamily
IPR006202Neur_chan_lig-bdDomain
IPR018000Neurotransmitter_ion_chnl_CSConserved_site
IPR036719Neuro-gated_channel_TM_sfHomologous_superfamily
IPR036734Neur_chan_lig-bd_sfHomologous_superfamily
IPR038050Neuro_actylchol_recHomologous_superfamily

Pfam: PF02931, PF02932

Catalyzed reactions (Rhea), 1 shown:

  • chloride(in) = chloride(out) (RHEA:29823)

UniProt features (76 total): sequence variant 17, strand 13, helix 11, binding site 10, topological domain 5, turn 5, transmembrane region 4, glycosylation site 3, splice variant 3, sequence conflict 2, signal peptide 1, chain 1, disulfide bond 1

Structure

Experimental structures (PDB)

95 structures, top 30 by resolution.

PDBMethodResolution (Å)
7A5VELECTRON MICROSCOPY1.7
9EQGELECTRON MICROSCOPY2.4
6QFAELECTRON MICROSCOPY2.49
7QN5ELECTRON MICROSCOPY2.5
9FASELECTRON MICROSCOPY2.5
9FEUELECTRON MICROSCOPY2.5
9FFUELECTRON MICROSCOPY2.5
9G2EELECTRON MICROSCOPY2.5
9FEXELECTRON MICROSCOPY2.6
8PETELECTRON MICROSCOPY2.6
9FGGELECTRON MICROSCOPY2.6
9FAJELECTRON MICROSCOPY2.6
9FAKELECTRON MICROSCOPY2.6
7QNEELECTRON MICROSCOPY2.7
9FG7ELECTRON MICROSCOPY2.7
9FG9ELECTRON MICROSCOPY2.7
9G2DELECTRON MICROSCOPY2.7
7PBZELECTRON MICROSCOPY2.79
9FF2ELECTRON MICROSCOPY2.8
9FFLELECTRON MICROSCOPY2.8
9FFVELECTRON MICROSCOPY2.8
9FAPELECTRON MICROSCOPY2.8
7QN6ELECTRON MICROSCOPY2.9
7QN9ELECTRON MICROSCOPY2.9
7QNCELECTRON MICROSCOPY2.9
9FEYELECTRON MICROSCOPY2.9
9FG8ELECTRON MICROSCOPY2.9
9FGFELECTRON MICROSCOPY2.9
9FAQELECTRON MICROSCOPY2.9
9FAWELECTRON MICROSCOPY2.9

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P28472-F180.640.63

Antibody-complex structures (SAbDab): 575O8F, 5OJM, 6A96, 6HUG, 6HUJ, 6HUK, 6HUO, 6HUP, 6I53, 6QFA, 7A5V, 7PBD, 7PBZ, 7PC0, 7QN5, 7QN6, 7QN7, 7QN8, 7QN9, 7QNA, 7QNB, 7QNC, 7QND, 7QNE, 8PET (+32 more)

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (10): 120–122; 122 (in chain a); 122 (in chain b); 180–182; 180 (in chain a); 181–182 (in chain b); 182 (in chain a); 225; 227 (in chain a); 227 (in chain b)

Disulfide bonds (1): 161–175

Glycosylation sites (3): 33, 105, 174

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-1236394Signaling by ERBB4
R-HSA-977443GABA receptor activation

MSigDB gene sets: 430 (showing top): GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, GOBP_CIRCADIAN_RHYTHM, GOBP_DENDRITE_DEVELOPMENT, GOBP_MEMORY, E2F_Q4, GOBP_HINDBRAIN_DEVELOPMENT, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_METENCEPHALON_DEVELOPMENT, GOBP_COGNITION, GOBP_RESPONSE_TO_ZINC_ION, MODULE_274, GOBP_SENSORY_PERCEPTION_OF_TEMPERATURE_STIMULUS, GOBP_BEHAVIOR, E2F4DP1_01

GO Biological Process (30): signal transduction (GO:0007165), gamma-aminobutyric acid signaling pathway (GO:0007214), learning (GO:0007612), memory (GO:0007613), response to xenobiotic stimulus (GO:0009410), reproductive behavior (GO:0019098), cerebellum development (GO:0021549), social behavior (GO:0035176), exploration behavior (GO:0035640), circadian sleep/wake cycle, REM sleep (GO:0042747), synaptic transmission, GABAergic (GO:0051932), roof of mouth development (GO:0060021), hard palate development (GO:0060022), inhibitory postsynaptic potential (GO:0060080), inner ear receptor cell development (GO:0060119), innervation (GO:0060384), motor behavior (GO:0061744), cellular response to zinc ion (GO:0071294), cellular response to histamine (GO:0071420), response to anesthetic (GO:0072347), cochlea development (GO:0090102), chloride transmembrane transport (GO:1902476), inhibitory synapse assembly (GO:1904862), monoatomic ion transport (GO:0006811), chloride transport (GO:0006821), chemical synaptic transmission (GO:0007268), nervous system development (GO:0007399), brain development (GO:0007420), monoatomic ion transmembrane transport (GO:0034220), neuron development (GO:0048666)

GO Molecular Function (9): GABA-A receptor activity (GO:0004890), GABA-gated chloride ion channel activity (GO:0022851), identical protein binding (GO:0042802), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), transmembrane signaling receptor activity (GO:0004888), monoatomic ion channel activity (GO:0005216), extracellular ligand-gated monoatomic ion channel activity (GO:0005230), chloride channel activity (GO:0005254), signaling receptor activity (GO:0038023)

GO Cellular Component (12): plasma membrane (GO:0005886), cell surface (GO:0009986), cytoplasmic vesicle membrane (GO:0030659), chloride channel complex (GO:0034707), dendritic spine (GO:0043197), postsynaptic membrane (GO:0045211), GABA-ergic synapse (GO:0098982), postsynaptic specialization membrane (GO:0099634), GABA-A receptor complex (GO:1902711), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410), synapse (GO:0045202)

Reactome top-level categories

Rollup of top-2 pathways:

CategoryPathways
Signaling by Receptor Tyrosine Kinases1
Neurotransmitter receptors and postsynaptic signal transmission1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
behavior4
anatomical structure development3
GABA receptor activity2
learning or memory2
response to chemical2
regulation of postsynaptic membrane potential2
transmitter-gated monoatomic ion channel activity2
cellular anatomical structure2
postsynapse2
synaptic membrane2
cell communication1
cellular process1
signaling1
regulation of cellular process1
cellular response to stimulus1
cell-cell signaling1
multicellular organismal reproductive process1
metencephalon development1
biological process involved in intraspecies interaction between organisms1
circadian sleep/wake cycle process1
circadian sleep/wake cycle, sleep1
chemical synaptic transmission1
secondary palate development1
chemical synaptic transmission, postsynaptic1
neuron development1
inner ear receptor cell differentiation1
nerve development1
multicellular organismal process1
response to zinc ion1
cellular response to metal ion1
response to histamine1
cellular response to nitrogen compound1
chloride channel activity1
ligand-gated monoatomic anion channel activity1
protein binding1
signaling receptor activity1
monoatomic ion transmembrane transporter activity1
channel activity1
ligand-gated monoatomic ion channel activity1
monoatomic anion channel activity1

Protein interactions and networks

STRING

1922 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
GABRB3UBE3AP78355867
GABRB3SNRPNP14648845
GABRB3ATP10AO60312825
GABRB3GAD1Q99259792
GABRB3MECP2P51608779
GABRB3MKRN3Q13064746
GABRB3SHANK3Q9BYB0746
GABRB3GABBR2O75899724
GABRB3CDKL5O76039707
GABRB3NDNQ99608705
GABRB3CLCN2P51788686
GABRB3CACNA1HO95180671
GABRB3GRIA2P42262634
GABRB3GAD2Q05329634
GABRB3SCN1AP35498632

IntAct

28 interactions, top by confidence:

ABTypeScore
GABRB3GABRB3psi-mi:“MI:0407”(direct interaction)0.620
GABRA1GABRG2psi-mi:“MI:0915”(physical association)0.550
MCOLN3UPK3BL1psi-mi:“MI:0914”(association)0.530
CHRNA4FZD6psi-mi:“MI:0914”(association)0.530
GABRA1psi-mi:“MI:0915”(physical association)0.400
GABRG2psi-mi:“MI:0915”(physical association)0.400
GABRB3MEOX2psi-mi:“MI:0915”(physical association)0.370
GABRB3GABRA5psi-mi:“MI:0407”(direct interaction)0.360
CHRNA4TMEM223psi-mi:“MI:0914”(association)0.350
CHRNB4GPR89Apsi-mi:“MI:0914”(association)0.350
GLRA3GCNT3psi-mi:“MI:0914”(association)0.350
GABRA6HMGCRpsi-mi:“MI:0914”(association)0.350
GABRB2GABRB3psi-mi:“MI:0914”(association)0.350
GABRA4GABRG2psi-mi:“MI:0915”(physical association)0.320
GABRA4GABRDpsi-mi:“MI:0915”(physical association)0.320
GABRB3GABRG2psi-mi:“MI:0915”(physical association)0.320
GABRB3GABRDpsi-mi:“MI:0915”(physical association)0.320
Arfgef2GABRA1psi-mi:“MI:0403”(colocalization)0.270

BioGRID (22): GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), AKAP5 (Reconstituted Complex), AKAP5 (Affinity Capture-Western), PRKCA (Reconstituted Complex), PRKACA (Reconstituted Complex), GABRB3 (Affinity Capture-RNA), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS), GABRB3 (Affinity Capture-MS)

ESM2 similar proteins: D1LYT2, O94925, P08219, P08220, P0C2W5, P10063, P10064, P14867, P15431, P16305, P18505, P18507, P18508, P19019, P19150, P19969, P20236, P21548, P22300, P22723, P23574, P23576, P24045, P26048, P26049, P27681, P28472, P28473, P30191, P31644, P34903, P47869, P47870, P50571, P62812, P62813, P63079, P63080, P63137, P63138

Diamond homologs: A0A1S4H2E2, A8MPY1, D1LYT2, G5EBR3, O14764, O75311, O93430, P0C2W5, P15431, P18505, P18506, P19019, P20781, P22771, P22933, P23416, P24045, P25123, P28472, P47870, P48167, P48168, P63079, P63080, P63137, P63138, Q08832, Q61603, Q75NA5, Q7TNC8, Q94900, Q9BLY8, Q9GJS9, Q9V9Y4, F1R8P4, O00591, O09028, O18276, P07727, P08219

SIGNOR signaling

2 interactions.

AEffectBMechanism
GABRB3“form complex”“GABA-A (a4-b3-d) receptor”binding
GABRB3“form complex”“GABA-A (a6-b3-d) receptor”binding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 19 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
GABA receptor activation6135.9×5e-11

GO biological processes:

GO termPartnersFoldFDR
gamma-aminobutyric acid signaling pathway7237.8×2e-14
inhibitory synapse assembly6234.1×2e-12
synaptic transmission, GABAergic7216.8×2e-14
chloride transmembrane transport8118.7×2e-14

Disease & clinical

Clinical variants and AI predictions

ClinVar

781 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic47
Likely pathogenic46
Uncertain significance311
Likely benign260
Benign51

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1069296NM_000814.6(GABRB3):c.288G>T (p.Arg96Ser)Pathogenic
1069675NC_000015.9:g.(?26792940)(27020442_?)delPathogenic
1164045NM_000814.6(GABRB3):c.675C>G (p.Phe225Leu)Pathogenic
1315905NM_000814.6(GABRB3):c.240+2T>CPathogenic
1364700NM_000814.6(GABRB3):c.923T>G (p.Met308Arg)Pathogenic
1452714NM_000814.6(GABRB3):c.374del (p.Asn125fs)Pathogenic
1453717NM_000814.6(GABRB3):c.860C>T (p.Thr287Ile)Pathogenic
1456555NM_000814.6(GABRB3):c.405_406del (p.Val136fs)Pathogenic
1460165NM_000814.6(GABRB3):c.470C>T (p.Thr157Met)Pathogenic
153815GRCh38/hg38 15q11.2-13.1(chr15:23328044-28315123)x1Pathogenic
1723205NM_000814.6(GABRB3):c.580C>T (p.Arg194Ter)Pathogenic
2003106NM_000814.6(GABRB3):c.6G>A (p.Trp2Ter)Pathogenic
2423402NC_000015.9:g.(?26866441)(26866701_?)delPathogenic
2500725NM_000814.6(GABRB3):c.929T>G (p.Leu310Arg)Pathogenic
254262NM_000814.6(GABRB3):c.545A>T (p.Tyr182Phe)Pathogenic
254263NM_000814.6(GABRB3):c.745C>A (p.Gln249Lys)Pathogenic
254264NM_000814.6(GABRB3):c.913G>A (p.Ala305Thr)Pathogenic
2921785NM_000814.6(GABRB3):c.927C>A (p.Tyr309Ter)Pathogenic
2947142NM_000814.6(GABRB3):c.987C>G (p.Tyr329Ter)Pathogenic
2947221NM_000814.6(GABRB3):c.817G>A (p.Ala273Thr)Pathogenic
2949842NM_000814.6(GABRB3):c.238A>C (p.Met80Leu)Pathogenic
3243811NC_000015.9:g.(?26792940)(27018109_?)delPathogenic
3243812NC_000015.9:g.(?27017529)(27018109_?)delPathogenic
3243813NC_000015.9:g.(?26792940)(26866701_?)delPathogenic
3243815NC_000015.9:g.(?26792940)(26828581_?)delPathogenic
3251936NM_000814.6(GABRB3):c.76C>T (p.Gln26Ter)Pathogenic
3340580NM_000814.6(GABRB3):c.550T>C (p.Tyr184His)Pathogenic
3342557NM_021912.5(GABRB3):c.39G>A (p.Trp13Ter)Pathogenic
3384351NM_000814.6(GABRB3):c.229G>A (p.Glu77Lys)Pathogenic
3391509NM_000814.6(GABRB3):c.239T>A (p.Met80Lys)Pathogenic

SpliceAI

4460 predictions. Top by Δscore:

VariantEffectΔscore
15:26561174:TCC:Tacceptor_gain1.0000
15:26561174:TCCCT:Tacceptor_loss1.0000
15:26561175:CC:Cacceptor_gain1.0000
15:26561175:CCC:Cacceptor_gain1.0000
15:26561176:CC:Cacceptor_gain1.0000
15:26561176:CCTAG:Cacceptor_loss1.0000
15:26561177:C:CCacceptor_gain1.0000
15:26561177:CTA:Cacceptor_loss1.0000
15:26561178:T:Aacceptor_loss1.0000
15:26567575:ACAT:Adonor_loss1.0000
15:26567576:CATA:Cdonor_loss1.0000
15:26567577:ATAC:Adonor_loss1.0000
15:26567578:TA:Tdonor_loss1.0000
15:26567579:A:ACdonor_gain1.0000
15:26567580:C:CCdonor_gain1.0000
15:26567734:C:CCacceptor_gain1.0000
15:26580314:CTCA:Cdonor_loss1.0000
15:26580315:TCACC:Tdonor_loss1.0000
15:26580316:CA:Cdonor_loss1.0000
15:26580317:ACCTG:Adonor_loss1.0000
15:26580318:C:Tdonor_loss1.0000
15:26580452:GCCAT:Gacceptor_gain1.0000
15:26580453:CCAT:Cacceptor_gain1.0000
15:26580453:CCATC:Cacceptor_gain1.0000
15:26580454:CAT:Cacceptor_gain1.0000
15:26580454:CATC:Cacceptor_gain1.0000
15:26580455:AT:Aacceptor_gain1.0000
15:26580455:ATCT:Aacceptor_loss1.0000
15:26580456:TCTG:Tacceptor_loss1.0000
15:26580457:C:CCacceptor_gain1.0000

AlphaMissense

3106 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
15:26547869:T:AD449V1.000
15:26547869:T:GD449A1.000
15:26547870:C:GD449H1.000
15:26561028:G:CN328K1.000
15:26561028:G:TN328K1.000
15:26561038:G:TA325D1.000
15:26561042:A:GY324H1.000
15:26561047:A:GL322P1.000
15:26561050:A:GL321P1.000
15:26561050:A:TL321H1.000
15:26561053:G:TA320D1.000
15:26561058:G:CF318L1.000
15:26561058:G:TF318L1.000
15:26561060:A:GF318L1.000
15:26561075:A:GC313R1.000
15:26561083:A:GL310P1.000
15:26561092:T:AD307V1.000
15:26561092:T:GD307A1.000
15:26561093:C:GD307H1.000
15:26561100:T:AK304N1.000
15:26561100:T:GK304N1.000
15:26561119:G:TP298H1.000
15:26561158:G:TT285K1.000
15:26561161:A:CL284R1.000
15:26561161:A:GL284P1.000
15:26561161:A:TL284Q1.000
15:26561164:A:TV283E1.000
15:26561176:C:TG279E1.000
15:26567581:C:AG279W1.000
15:26567581:C:GG279R1.000

dbSNP variants (sampled 300 via entrez): RS1000004673 (15:26546511 G>A), RS1000009059 (15:26630226 A>G), RS1000016919 (15:26552325 C>T), RS1000023925 (15:26676934 C>A), RS1000026523 (15:26733141 T>A), RS1000033739 (15:26632204 C>A,T), RS1000055841 (15:26670537 A>T), RS1000056365 (15:26732853 C>A), RS1000060223 (15:26579618 T>C), RS1000077152 (15:26591454 T>A), RS1000122231 (15:26580171 A>G), RS1000133990 (15:26695082 T>C), RS1000140318 (15:26770086 C>A,G,T), RS1000158007 (15:26672119 A>C), RS1000192968 (15:26693139 C>A,T)

Disease associations

OMIM: gene MIM:137192 | disease phenotypes: MIM:612269, MIM:617113, MIM:600131, MIM:181500, MIM:308350

GenCC curated gene-disease

DiseaseClassificationInheritance
developmental and epileptic encephalopathy, 43DefinitiveAutosomal dominant
genetic developmental and epileptic encephalopathyDefinitiveAutosomal dominant
epilepsy, childhood absence, susceptibility to, 5DefinitiveAutosomal dominant
Lennox-Gastaut syndromeSupportiveAutosomal dominant
childhood absence epilepsySupportiveAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
genetic developmental and epileptic encephalopathyDefinitiveAD

Mondo (12): epilepsy, childhood absence, susceptibility to, 5 (MONDO:0012843), developmental and epileptic encephalopathy, 43 (MONDO:0014921), epilepsy, childhood absence, susceptibility to, 1 (MONDO:0020759), insomnia (MONDO:0013600), schizophrenia (MONDO:0005090), myoepithelial tumor (MONDO:0002380), epilepsy (MONDO:0005027), intellectual disability (MONDO:0001071), developmental and epileptic encephalopathy, 1 (MONDO:0010632), genetic developmental and epileptic encephalopathy (MONDO:0100062), Lennox-Gastaut syndrome (MONDO:0016532), childhood absence epilepsy (MONDO:0010826)

Orphanet (3): Childhood absence epilepsy (Orphanet:64280), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

58 total (30 of 58 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000020Urinary incontinence
HP:0000708Atypical behavior
HP:0000709Psychosis
HP:0000716Depression
HP:0000718Aggressive behavior
HP:0000729Autistic behavior
HP:0000737Irritability
HP:0000739Anxiety
HP:0000741Apathy
HP:0000752Hyperactivity
HP:0000980Pallor
HP:0001249Intellectual disability
HP:0001251Ataxia
HP:0001263Global developmental delay
HP:0001268Mental deterioration
HP:0001290Generalized hypotonia
HP:0001298Encephalopathy
HP:0001328Specific learning disability
HP:0001336Myoclonus
HP:0002069Bilateral tonic-clonic seizure
HP:0002121Generalized non-motor (absence) seizure
HP:0002123Generalized myoclonic seizure
HP:0002321Vertigo
HP:0002353EEG abnormality
HP:0002360Sleep disturbance
HP:0002363Abnormal brainstem morphology
HP:0002373Febrile seizure (within the age range of 3 months to 6 years)
HP:0002376Developmental regression
HP:0002521Hypsarrhythmia

GWAS associations

10 associations (top):

StudyTraitp-value
GCST000477_24Cognitive performance2.000000e-06
GCST000785_3Longevity1.000000e-06
GCST002408_14Response to methotrexate in juvenile idiopathic arthritis3.000000e-06
GCST004904_176Body mass index3.000000e-08
GCST008170_3Thyroglobulin plasma levels2.000000e-06
GCST008181_11Spontaneous preterm birth without premature rupture of membranes5.000000e-06
GCST009196_7Pericalcarine cortex volume7.000000e-06
GCST010002_162Refractive error4.000000e-11
GCST010396_211Gut microbiota (bacterial taxa, hurdle binary method)4.000000e-06
GCST011050_4Postprandial triglyceride response3.000000e-06

EFO canonical traits (6, from GWAS)

EFO IDTrait name
EFO:0003926neuropsychological test
EFO:0004340body mass index
EFO:0010050thyroglobulin measurement
EFO:0006917spontaneous preterm birth
EFO:0007874gut microbiome measurement
EFO:0004530triglyceride measurement

MeSH disease descriptors (5)

DescriptorNameTree numbers
D004827EpilepsyC10.228.140.490
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D065768Lennox Gastaut SyndromeC10.228.140.490.493.750; C16.320.495
D009208MyoepitheliomaC04.557.435.585
D007319Sleep Initiation and Maintenance DisordersC10.886.425.800.800; F03.870.400.800.800

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (19): CHEMBL1847 (SINGLE PROTEIN), CHEMBL2093872 (PROTEIN COMPLEX GROUP), CHEMBL2094120 (PROTEIN COMPLEX), CHEMBL2094121 (PROTEIN COMPLEX), CHEMBL2094122 (PROTEIN COMPLEX), CHEMBL2094130 (PROTEIN COMPLEX), CHEMBL2095190 (PROTEIN COMPLEX), CHEMBL2109244 (PROTEIN COMPLEX GROUP), CHEMBL2111366 (PROTEIN COMPLEX), CHEMBL3430899 (PROTEIN COMPLEX)

Molecules with ChEMBL bioactivity

32 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 527,705 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL15891LINDANE483,653
CHEMBL448PENTOBARBITAL449,933
CHEMBL1082407ENZALUTAMIDE49,652
CHEMBL12DIAZEPAM492,281
CHEMBL1544LIOTHYRONINE423,700
CHEMBL1568698GANAXOLONE41,657
CHEMBL207538BREXANOLONE41,585
CHEMBL3183409APALUTAMIDE44,076
CHEMBL407FLUMAZENIL47,150
CHEMBL452CLONAZEPAM433,297
CHEMBL13280FLUNITRAZEPAM411,549
CHEMBL451CHLORDIAZEPOXIDE436,533
CHEMBL646TRIAZOLAM421,589
CHEMBL911ZOLPIDEM417,821
CHEMBL526PROPOFOL428,835
CHEMBL1521ZALEPLON49,958
CHEMBL4105630ZURANOLONE4290
CHEMBL268254DELORAZEPAM21,308
CHEMBL275638FLAVONE288,985
CHEMBL287631PROGABIDE23,853
CHEMBL454095ABECARNIL2
CHEMBL8260BAICALEIN2
CHEMBL200177MK-07772
CHEMBL3647536DARIGABAT2
CHEMBL366947BRETAZENIL2
CHEMBL1397886LORECLEZOLE2
CHEMBL190279ALFAXALONE2
CHEMBL3681419BASMISANIL2
CHEMBL1783282AZD73252
CHEMBL273481MUSCIMOL1

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs4906902Toxicity3opioidsOpioid-Related Disorders

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs4906902GABRB332.001opioids

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: lgic — GABAA receptors

Most potent curated ligand interactions (1 total), top 1:

LigandActionAffinityParameter
etazolateBinding5.46pIC50

Binding affinities (BindingDB)

369 measured of 380 human assays (381 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-5,6-dihydropyridin-2(1H)-oneKI0.27 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(R)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-oneKI0.39 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(5-Chloropyridin-2-yl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-oneKI0.46 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-[5-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]pyrido[2,3-d]pyridazin-8-yl]piperazin-2-oneKI0.49 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)imidazolidin-2-oneKI0.52 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(S)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-2-fluoro-7,8,9,10-tetrahydro-5H-pyrazino[1,2-a]pyrido[3,2-e]pyrazin-6(6aH)-oneKI0.54 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(9aR)-8-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]pyridazin-3-yl]-1,3,4,7,9,9a-hexahydropyrazino[2,1-c][1,4]oxazin-6-oneKI0.55 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-5-methylpyridazin-3-yl]piperazin-2-oneKI0.56 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-3-methylpiperazin-2-oneKI0.58 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
7-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyrazineKI0.6 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-4-methylpyridazin-3-yl]piperazin-2-oneKI0.63 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(S)-8-(5-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyrido[2,3-d]pyridazin-8-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-oneKI0.64 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(2-morpholinoethyl)piperazin-2-oneKI0.67 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-ethyl-1,2,5,6-tetrahydropyridine-3-carboxamideKI0.67 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
HalcionKI0.68 nM
(9aR)-8-[6-[[5-chloro-3-[4-(difluoromethyl)phenyl]triazol-4-yl]methoxy]pyridazin-3-yl]-1,3,4,7,9,9a-hexahydropyrazino[2,1-c][1,4]oxazin-6-oneKI0.71 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
3-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)-6-(5,6-dihydro-2H-pyran-3-yl)pyridazineKI0.75 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(S)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-7,8,9,10-tetrahydro-5H-pyrazino[1,2-a]pyrido[3,2-e]pyrazin-6(6aH)-oneKI0.8 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(1-methyl-1H-pyrazol-3-yl)piperazin-2-oneKI0.81 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-(hydroxymethyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-oneKI0.82 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-1H-pyrazino[1,2-a]pyrazin-4-(6H)-oneKI0.84 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1H-2-imidazolyl[6-phenyl-4,5,7,8-tetraazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraen-9-yloxy]methaneKI0.87 nM
7-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-4,7-diazaspiro[2.5]octan-5-oneKI0.89 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N,N-dimethylpyrrolidin-3-amineKI0.89 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-methylhexahydro-1H-pyrazino[1,2-a]pyrazin-4(6H)-oneKI0.9 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6-methylpiperazin-2-oneKI0.91 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(1-methyl-1H-pyrazol-4-yl)piperazin-2-oneKI0.93 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazine-2,6-dioneKI0.96 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((4-(Difluoromethyl)-1-(4-(difluoromethyl)phenyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-oneKI0.96 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6,6-dimethylpiperazin-2-oneKI1 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-4-methoxypyridazin-3-yl]piperazin-2-oneKI1.05 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-1-yl)ethan-1-oneKI1.07 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)-2-fluorophenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-oneKI1.08 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-phenylazetidine-3-carboxamideKI1.1 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(pyridin-4-yl)azetidine-3-carboxamideKI1.1 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-(pyrimidin-2-ylmethyl)octahydro-4H-pyrazino[1,2-a]pyrazin-4-oneKI1.1 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(Cyclopropylmethyl)-4-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-oneKI1.11 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(5-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyrazin-2-yl)piperazin-2-oneKI1.11 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-(2,2,2-trifluoroethyl)octahydro-4H-pyrazino[1,2-a]pyrazin-4-oneKI1.13 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(1-methyl-1H-pyrazol-3-yl)azetidine-3-carboxamideKI1.15 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(1-(Difluoromethyl)-1H-pyrazol-4-yl)-4-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-oneKI1.17 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(2,2,2-trifluoroethyl)piperazin-2-oneKI1.18 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-3H-imidazo[5,1-c][1,4]oxazin-3-oneKI1.19 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(S)-8-(6-((4-Chloro-1-(4-(difluoromethyl)phenyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-oneKI1.21 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(S)-2-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydropyrrolo[1,2-a]pyrazin-4(1H)-oneKI1.24 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
4-(6-[(1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy]pyridin-3-yl)piperazin-2-oneKI1.24 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
9-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6-oxa-2-thia-9-azaspiro[4.5]decane 2,2-dioxideKI1.24 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-ethyl-2-azabicyclo[2.1.1]hexane-1-carboxamideKI1.25 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
(3S,9aR)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)tetrahydro-1H-3,9a-methanopyrazino[2,1-c][1,4]oxazin-6(7H)-oneKI1.26 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF
1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(1-methyl-1H-pyrazol-4-yl)azetidine-3-carboxamideKI1.27 nMUS-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF

ChEMBL bioactivities

3874 potent at pChembl≥5 of 4004 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.70Ki0.02nMCHEMBL3144696
10.52Ki0.03nMCHEMBL3144849
10.40Ki0.04nMCHEMBL3144849
10.30Ki0.05nMCGS-8216
10.30Ki0.05nMCHEMBL4243764
10.22Ki0.06nMCHEMBL3144696
10.22Ki0.06nMCHEMBL4243764
10.15Ki0.07nMCHEMBL3144849
10.10Ki0.08nMCHEMBL3144696
10.10Ki0.08nMCGS-8216
10.10Ki0.08nMCHEMBL4243764
10.05Ki0.09nMCHEMBL3144841
10.00IC500.1nMCHEMBL454349
10.00Ki0.1nMCHEMBL436768
10.00Ki0.1nMCHEMBL202696
10.00Ki0.1nMCHEMBL203286
10.00Ki0.1nMCHEMBL378761
10.00Ki0.1nMCHEMBL211704
10.00Ki0.1nMCHEMBL3144841
9.96Ki0.11nMCHEMBL380110
9.96Ki0.11nMCHEMBL3144841
9.92Ki0.12nMCHEMBL199957
9.92Ki0.12nMCHEMBL4476044
9.92Ki0.12nMCHEMBL3144615
9.92Ki0.12nMCGS-8216
9.92Ki0.12nMCHEMBL4243764
9.85Ki0.14nMCHEMBL383677
9.85Ki0.14nMCHEMBL212008
9.85Ki0.14nMCHEMBL225631
9.85Ki0.14nMCHEMBL1644826
9.85Ki0.14nMCHEMBL130609
9.85Ki0.14nMCHEMBL10483
9.82Ki0.15nMCHEMBL202343
9.82Ki0.15nMCHEMBL206587
9.82Ki0.15nMCHEMBL300615
9.80IC500.16nMCHEMBL309517
9.80Ki0.16nMCHEMBL206380
9.77Ki0.17nMCHEMBL375742
9.77Ki0.17nMCHEMBL3144849
9.77Ki0.17nMCHEMBL3144615
9.77Ki0.17nMCHEMBL299210
9.74Ki0.18nMDARIGABAT
9.74Ki0.18nMCHEMBL323805
9.74Ki0.18nMCHEMBL3144698
9.72Ki0.19nMCHEMBL361129
9.72Ki0.19nMCHEMBL206380
9.72Ki0.19nMCHEMBL4436326
9.70Ki0.2nMCHEMBL178677
9.70Ki0.2nMMK-0777
9.70Ki0.2nMCHEMBL381380

PubChem BioAssay actives

3443 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-(4-ethynylphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one73089: Binding affinity to human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-2-beta-3-gamma-2ki<0.0001uM
8-ethynyl-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2ki<0.0001uM
8-methoxy-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2ki0.0001uM
2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one40988: Inhibition on Benzodiazepine receptoric500.0001uM
5-fluoro-2-[2-fluoro-5-[7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]benzonitrile259132: Displacement of [3H]Ro-151788 from human recombinant GABAA alpha5 in combination with beta3gamma2 expressed in L(tk-) cellski0.0001uM
8-chloro-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2ki0.0001uM
tert-butyl 8-hydroxy-5-methyl-6-oxo-4H-imidazo[1,5-a][1,4]benzodiazepine-3-carboxylate73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2ki0.0001uM
3-phenyl-6-(pyridazin-3-ylmethoxy)-[1,2,4]triazolo[3,4-a]phthalazine72625: Binding affinity for human GABA-A receptor alpha-5-beta-3-gamma-2 subunits in L(tk-) cellski0.0001uM
2-[5-(7-ethyl-8-oxoimidazo[1,2-a]pyrazin-3-yl)-2-fluorophenyl]-5-fluorobenzonitrile262297: Displacement of [3H]Ro-151788 from human recombinant GABA-Aalpha5 receptor plus beta3gamma2ki0.0001uM
3,5-difluoro-2-[2-fluoro-5-[3-(2-hydroxypropan-2-yl)imidazo[1,2-b][1,2,4]triazin-7-yl]phenyl]benzonitrile260334: Displacement of [3H]Ro 15-1788 from recombinant human GABAA alpha-1 receptor plus beta3gamma2 expressed in L(tk-) cellski0.0001uM
7-tert-butyl-6-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-phenyl-[1,2,4]triazolo[4,3-b]pyridazine282667: Displacement of [3H]Ro 15-1788 from human recombinant GABAA alpha-3-beta-3-gamma-2 receptor expressed in L(tk-) cellski0.0001uM
3-(2,6-difluorophenyl)-5-[4-fluoro-3-(3-fluoro-2-pyridinyl)phenyl]pyridazine262644: Displacement of [3H]Ro-151788 from recombinant human GABA-Aalpha1 receptor plus beta3gamma2ki0.0001uM
ethyl 6-methoxy-4-(methoxymethyl)-9H-pyrido[3,4-b]indole-3-carboxylate219791: Binding affinity measured using LtK- cell membranes expressing GABA alpha-1-beta-3-gamma-2 receptorki0.0001uM
2-(4-methylphenyl)-9-(2-thiophen-3-ylethyl)-6H-[1,2,4]triazolo[4,3-c]quinazoline-3,5-dione552801: Displacement of [3H]flumazenil human recombinant alpha1beta3gamma2 GABA(A) receptor expressed in HEK293 cells after 30 mins by glass fiber filtration assayki0.0001uM
7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-thiophen-3-ylpyrazolo[1,5-d][1,2,4]triazine267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cellski0.0001uM
2-[3-[5-(2-hydroxypropan-2-yl)benzimidazol-1-yl]phenyl]benzonitrile1604549: Displacement of [3H]-Ro15-1788 from human GABAA alpha5beta3gamma2 expressed in HEK293 cell membranes incubated for 40 or 90 mins by liquid scintillation counting methodki0.0001uM
7-(2-fluorophenyl)-3-(furan-2-yl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]pyrazolo[1,5-d][1,2,4]triazine267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cellski0.0001uM
7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-thiophen-2-ylpyrazolo[1,5-d][1,2,4]triazine267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cellski0.0001uM
2-phenyl-3aH-pyrazolo[4,3-c]quinolin-3-one72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2ki0.0001uM
8-bromo-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2ki0.0001uM
4-[2-fluoro-5-[7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]pyridine-3-carbonitrile262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cellski0.0001uM
7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-pyridin-4-ylpyrazolo[1,5-d][1,2,4]triazine267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cellski0.0001uM
2-[2-fluoro-5-[8-fluoro-7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyridin-3-yl]phenyl]benzonitrile262219: Displacement of [3H]Ro 15-1788 from human GABA-Aalpha1 receptor plus beta-3-gamma-2 expressed in mouse L(tk-) cellski0.0002uM
8-chloro-2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one1388015: Displacement of [3H]Ro15-1788 from human GABAA receptor alpha1beta3gamma2 expressed in LTK cells preincubated for 30 secs measured every 15 mins at -60 mV holding potential by two-electrode voltage clamp assayki0.0002uM
tert-butyl (7S)-14-bromo-12-oxo-2,4,11-triazatetracyclo[11.4.0.02,6.07,11]heptadeca-1(17),3,5,13,15-pentaene-5-carboxylate73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2ki0.0002uM
6-phenyl-9-[(2-propyl-1,2,4-triazol-3-yl)methoxy]-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cellski0.0002uM
9-[(1-benzylimidazol-2-yl)methoxy]-6-phenyl-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cellski0.0002uM
6-[(1-methylimidazol-2-yl)methoxy]-3-phenyl-[1,2,4]triazolo[3,4-a]phthalazine72620: Binding affinity for human GABA-A receptor alpha-3-beta-3-gamma-2 subunits in L(tk-) cellski0.0002uM
9-[(3,5-dimethyl-2-pyridinyl)methoxy]-6-phenyl-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cellski0.0002uM
ethyl 15-methoxy-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptorki0.0002uM
ethyl 4-(methoxymethyl)-5-phenylmethoxy-9H-pyrido[3,4-b]indole-3-carboxylate1932290: Displacement of [3H]flunitrazepam from GABAA (unknown origin ) receptor by radioligand binding assayic500.0002uM
2-(4-chlorophenyl)-6,7,8,9-tetrahydro-1H-pyrazolo[4,3-c]quinolin-3-one221780: In vitro binding affinity against gamma-aminobutyric acid A receptor, alpha 1 expressed in L(tk) cells by displacement of [3H]Ro-151788ki0.0002uM
2-(4-bromophenyl)-1H-pyrazolo[4,3-c]quinolin-3-one72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2ki0.0002uM
3-(2,5-difluorophenyl)-7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]pyrazolo[1,5-d][1,2,4]triazine267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cellski0.0002uM
3-(15-fluoro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaen-5-yl)-5-methyl-1,2,4-oxadiazole468635: Displacement of [3H]Flumazenil from cloned human GABA alpha-5-beta-3-gamma-2 receptor expressed in HEK293 cellski0.0002uM
ethyl 2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(17),3,5,9,11,13,15-heptaene-5-carboxylate448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptorki0.0002uM
ethyl 15-chloro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptorki0.0002uM
ethyl 15-fluoro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate468641: Displacement of [3H]Flumazenil from human GABA alpha-5-beta-3-gamma-2 receptor expressed in insect SF9 cellski0.0002uM
7-cyclobutyl-3-(2,6-difluorophenyl)-6-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-[1,2,4]triazolo[4,3-b]pyridazine1604538: Displacement of [3H]-flumazenil from human GABAA alpha1beta3gamma2 expressed in Ltk cellski0.0002uM
15-(4-chlorophenyl)-13-(4-methyl-1,3-thiazol-2-yl)-4,11-diazatricyclo[9.4.0.02,7]pentadeca-1(15),2(7),3,5,13-pentaen-12-one72914: Displacement of [3H]Ro-151788 from human GABA-A receptor alpha-1-beta-3-gamma-2 subunits expressed in L(tk) cellski0.0002uM
2-(4-chlorophenyl)-8-(pyridin-4-ylmethyl)-1,5a,6,7,9,9a-hexahydropyrazolo[4,3-c][1,6]naphthyridin-3-one221780: In vitro binding affinity against gamma-aminobutyric acid A receptor, alpha 1 expressed in L(tk) cells by displacement of [3H]Ro-151788ki0.0002uM
3-fluoro-2-[2-fluoro-5-(7-methyl-8-oxoimidazo[1,2-a]pyrazin-3-yl)phenyl]benzonitrile262295: Displacement of [3H]Ro-151788 from human recombinant GABA-Aalpha1 receptor plus beta3gamma2ki0.0002uM
5-ethoxy-2,4,8,9-tetrazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(17),3,5,9,11,13,15-heptaene448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptorki0.0002uM
7-ethyl-4-[3-(4-ethylsulfonyl-2-methoxyphenyl)-4-fluorophenyl]imidazo[4,5-c]pyridazine1553920: Displacement of [3H]-flumazenil from human GABAA alpha1beta3gamma2 receptor expressed in HEK293 cell membranes measured after 2 hrs by liquid scintillation counting methodki0.0002uM
4-[2-fluoro-5-[3-(2-hydroxypropan-2-yl)imidazo[1,2-b][1,2,4]triazin-7-yl]phenyl]pyridine-3-carbonitrile262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cellski0.0003uM
4-fluoro-2-[2-fluoro-5-[7-(trifluoromethyl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]benzonitrile259132: Displacement of [3H]Ro-151788 from human recombinant GABAA alpha5 in combination with beta3gamma2 expressed in L(tk-) cellski0.0003uM
2-[3-(4-fluoro-3-pyridin-4-ylphenyl)imidazo[1,2-a]pyrimidin-7-yl]propan-2-ol262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cellski0.0003uM
7-methoxy-2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2ki0.0003uM
tert-butyl 8-azido-5-methyl-6-oxo-4H-imidazo[1,5-a][1,4]benzodiazepine-3-carboxylate73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2ki0.0003uM
ethyl (7S)-14-bromo-11-oxo-2,4,10-triazatetracyclo[10.4.0.02,6.07,10]hexadeca-1(16),3,5,12,14-pentaene-5-carboxylate73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2ki0.0003uM

CTD chemical–gene interactions

66 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidincreases expression, affects expression, increases methylation, affects cotreatment8
gamma-Aminobutyric Acidaffects binding, increases activity, increases reaction, affects cotreatment, decreases reaction (+1 more)6
methylmercuric chlorideincreases expression, affects cotreatment4
fipronildecreases activity, affects binding, decreases reaction4
1-(4-ethynylphenyl)-4-propyl-2,6,7-trioxabicyclo(2.2.2)octaneaffects binding, decreases activity, decreases reaction, increases reaction4
Hexachlorocyclohexaneaffects binding, decreases reaction, increases activity, increases reaction4
trichostatin Aaffects cotreatment, increases expression3
loreclezoleincreases transport, affects binding, affects cotreatment, increases activity, increases reaction (+1 more)3
Endosulfandecreases reaction, affects binding3
Propofolaffects cotreatment, affects binding, decreases reaction, increases activity, increases reaction (+1 more)3
picrotoxininaffects binding, decreases reaction, increases activity, increases response to substance2
tert-butylbicyclophosphorothionateaffects binding, decreases reaction2
mercuric bromideincreases expression, affects cotreatment2
entinostataffects cotreatment, decreases expression, increases expression2
belinostatincreases expression, affects cotreatment2
Vorinostatdecreases expression, increases expression2
Panobinostataffects cotreatment, increases expression2
Flunitrazepamaffects binding, increases reaction, increases activity, affects reaction2
Phenylmercuric Acetateaffects cotreatment, increases expression2
p-Chloromercuribenzoic Acidaffects cotreatment, increases expression2
Particulate Matteraffects methylation, decreases expression, increases methylation2
4-chloro-N-(2-(2-thienyl)imidazo(1,2-a)pyridin-3-yl)benzamideaffects binding, increases activity1
bisphenol Aaffects cotreatment, decreases methylation1
tetramethylenedisulfotetramineincreases response to substance, affects binding, decreases reaction, increases activity1
sodium arseniteaffects methylation1
butyraldehydedecreases expression1
CL 218872affects binding, increases activity1
benzamideincreases reaction, affects binding, increases activity1
alpha-hexachlorocyclohexaneincreases reaction, affects binding, decreases reaction, increases activity1
Ro 15-4513affects binding, increases activity, increases reaction1

ChEMBL screening assays

887 unique, capped per target: 722 binding, 156 functional, 6 admet, 3 toxicity

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL2167730BindingInhibition of [3H]R-(-)-14-induced receptor photolabeling at human FLAG-tagged beta3 GABA A receptor expressed in HEK293S cells at 200 uM relative to untreated controlAllyl m-trifluoromethyldiazirine mephobarbital: an unusually potent enantioselective and photoreactive barbiturate general anesthetic. — J Med Chem
CHEMBL4810229ADMETInhibition of GABA A receptor (unknown origin) at 0.1 to 1 uMDiscovery of Pemigatinib: A Potent and Selective Fibroblast Growth Factor Receptor (FGFR) Inhibitor. — J Med Chem
CHEMBL5335653ToxicityAntagonist activity at GABA-A (unknown origin)Discovery of a Novel Bifunctional Steroid Analog, YXG-158, as an Androgen Receptor Degrader and CYP17A1 Inhibitor for the Treatment of Enzalutamide-Resistant Prostate Cancer. — J Med Chem

Cellosaurus cell lines

8 cell lines: 6 transformed cell line, 2 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1JKPrecisION hGABAA alpha1/beta3/gamma2-HEKTransformed cell lineFemale
CVCL_D1JLPrecisION hGABAA alpha3/beta3/gamma2-HEKTransformed cell lineFemale
CVCL_D1JMPrecisION hGABAA alpha4/beta3/gamma2-HEKTransformed cell lineFemale
CVCL_D1JNPrecisION hGABAA alpha5/beta3/gamma2-HEKTransformed cell lineFemale
CVCL_D1JPPrecisION hGABAA alpha6/beta3/gamma2-HEKTransformed cell lineFemale
CVCL_D1KPPrecisION hGABAA alpha2/beta3/gamma2-HEKTransformed cell lineFemale
CVCL_SP45HAP1 GABRB3 (-) 1Cancer cell lineMale
CVCL_SP46HAP1 GABRB3 (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

375 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT01370486PHASE4WITHDRAWNMelatonin Versus Placebo in the Lennox-Gastaut Syndrome: Neurophysiological and Neuropsychological Effects
NCT02731300PHASE4COMPLETEDTranscranial Direct Current Stimulation, Treatment of Childhood Drug-Resistant Lennox-Gastaut Syndrome, A Pilot Study
NCT04133480PHASE4WITHDRAWNInvestigation of Cognitive Outcomes With Cannabidiol Oral Solution
NCT05044819PHASE4ACTIVE_NOT_RECRUITINGAssessment of Potential for Chronic Liver Injury in Participants Treated With Epidiolex (Cannabidiol) Oral Solution
NCT06924827PHASE4NOT_YET_RECRUITINGA Study to Investigate the Transition of Children From ‘Artisanal Cannabidiol (CBD) to Epidiolex
NCT00124384PHASE4COMPLETEDThe Effects of Modafinil on Waking Function and on Sleep in Individuals With Primary Insomnia
NCT00156533PHASE4COMPLETEDLong Term Treatment With Zolpidem: Nightly and Intermittent Dosing
NCT00178048PHASE4COMPLETEDParoxetine in the Treatment of Chronic Primary Insomnia
NCT00235508PHASE4COMPLETEDSafety and Efficacy of Eszopiclone in Patients With Generalized Anxiety Disorder
NCT00252278PHASE4UNKNOWNEffect of Atomoxetine on ADHD-Related Insomnia in Children and Adolescents
NCT00283790PHASE4COMPLETEDResidual Effects of Zolpidem Tartrate Extended Release and Eszopiclone Vs Placebo
NCT00287391PHASE4COMPLETEDSleep Disorders and Gastroesophageal Reflux Disease (GERD)
NCT00295386PHASE4COMPLETEDCognitive-Behavioural and Hypnotic Treatment of Chronic Primary Insomnia Among the Elderly
NCT00296179PHASE4COMPLETEDAmbien CR For Treatment Of Insomnia Associated With Depression When Used Concomitantly With Lexapro
NCT00296790PHASE4COMPLETEDAmbien CR vs. Placebo For Treatment Of Insomnia Associated With Anxiety When Used Concomitantly With Escitalopram (Lexapro)
NCT00337272PHASE4TERMINATEDTreating Chronic Insomnia in Breast Cancer Patients
NCT00359229PHASE4COMPLETEDStilnox Treatment in Elderly Patients With Insomnia
NCT00365976PHASE4COMPLETEDStudy of the Insomnia in Patients With Low Back Pain
NCT00386334PHASE4COMPLETEDA Long-Term Safety and Efficacy Study of Eszopiclone in Elderly With Primary Chronic Insomnia
NCT00392041PHASE4COMPLETEDEszopiclone in the Treatment of Insomnia and Fibromyalgia
NCT00414037PHASE4TERMINATEDHow do Sleeping Pills Affect Pain in the Brain?
NCT00414102PHASE4COMPLETEDSubjective Efficacy of Ramelteon on Sleep in Adults With Chronic Insomnia.
NCT00432198PHASE4COMPLETEDZolpidem Postmarketing Study in Adolescent Patients With Insomnia
NCT00465972PHASE4COMPLETEDThe Treatment of Insomnia in Patients With HIV Disease
NCT00492232PHASE4COMPLETEDFacilitation of Zolpidem (≥10 mg) Discontinuation Through Use of Ramelteon in Subjects With Chronic Insomnia
NCT00507546PHASE4COMPLETEDFunctional Melatonin Replacement for Sleep Disruptions in Individuals With Tetraplegia
NCT00511134PHASE4TERMINATEDStudy of Lunesta Versus Placebo for Sleep Problems Related to Smoking Cessation and Zyban
NCT00566371PHASE4COMPLETEDThe Effect of a Once Daily Dose of Atomoxetine (ATX) on ADHD-Related Insomnia in Children and Adolescents
NCT00568789PHASE4COMPLETEDSafety of Ramelteon in Elderly Subjects
NCT00626210PHASE4TERMINATEDModafinil Treatment for Sleep/Wake Disturbances in Older Adults
NCT00628914PHASE4UNKNOWNBrain Mechanisms and Targeting Insomnia in Major Depression
NCT00653562PHASE4COMPLETEDZolpidem (Myslee) Post Marketing Study in Adolescent Patients With Insomnia - Evaluation With Polysomnography
NCT00666796PHASE4COMPLETEDA Study to Assess the Pharmacodynamic Interaction Between Gabapentin and Ethanol in Healthy Subjects
NCT00723970PHASE4COMPLETEDQuetiapine Extended Release (XR) for the Treatment of Menopausal Depression
NCT00724282PHASE4COMPLETEDTreatment of Insomnia and Glucose Metabolism
NCT00812214PHASE4COMPLETEDTreatment of Insomnia in Migraineurs
NCT00813735PHASE4COMPLETEDEszopiclone Co-Administered With Escitalopram for Insomnia in Elderly Adults With Major Depressive Disorder
NCT00826111PHASE4COMPLETEDThe Effects of Eszopiclone and Lexapro on Prefrontal Glutamate and GABA in Depression With Anxiety and Insomnia
NCT00869934PHASE4COMPLETEDCognitive-Behavior Therapy for Insomnia
NCT00889200PHASE4COMPLETEDEszopiclone Treatment & Cortisol Responsivity