GABRG2
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Summary
GABRG2 (gamma-aminobutyric acid type A receptor subunit gamma2, HGNC:4087) is a protein-coding gene on chromosome 5q34, encoding Gamma-aminobutyric acid receptor subunit gamma-2 (P18507). Gamma subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain.
This gene encodes a gamma-aminobutyric acid (GABA) receptor. GABA is the major inhibitory neurotransmitter in the mammlian brain, where it acts at GABA-A receptors, which are ligand-gated chloride channels. GABA-A receptors are pentameric, consisting of proteins from several subunit classes: alpha, beta, gamma, delta and rho. Mutations in this gene have been associated with epilepsy and febrile seizures. Multiple transcript variants encoding different isoforms have been identified for this gene.
Source: NCBI Gene 2566 — RefSeq curated summary.
At a glance
- Gene–disease (curated): epilepsy (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 10
- Clinical variants (ClinVar): 796 total — 84 pathogenic, 52 likely-pathogenic
- Phenotypes (HPO): 143
- Druggable target: yes — 55 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_198904
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4087 |
| Approved symbol | GABRG2 |
| Name | gamma-aminobutyric acid type A receptor subunit gamma2 |
| Location | 5q34 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000113327 |
| Ensembl biotype | protein_coding |
| OMIM | 137164 |
| Entrez | 2566 |
Gene structure
Transcript identifiers
Ensembl transcripts: 31 — 18 protein_coding, 6 nonsense_mediated_decay, 4 retained_intron, 3 protein_coding_CDS_not_defined
ENST00000356592, ENST00000361925, ENST00000414552, ENST00000522053, ENST00000522990, ENST00000523372, ENST00000638253, ENST00000638552, ENST00000638660, ENST00000638772, ENST00000638782, ENST00000638877, ENST00000639046, ENST00000639111, ENST00000639213, ENST00000639278, ENST00000639384, ENST00000639424, ENST00000639549, ENST00000639554, ENST00000639683, ENST00000639975, ENST00000640500, ENST00000640574, ENST00000640739, ENST00000640757, ENST00000640910, ENST00000640985, ENST00000641017, ENST00000943443, ENST00000943444
RefSeq mRNA: 15 — MANE Select: NM_198904
NM_000816, NM_001375339, NM_001375340, NM_001375341, NM_001375342, NM_001375343, NM_001375344, NM_001375345, NM_001375346, NM_001375347, NM_001375348, NM_001375349, NM_001375350, NM_198903, NM_198904
CCDS: CCDS4358, CCDS4359, CCDS47333, CCDS93812, CCDS93813, CCDS93814, CCDS93815, CCDS93816
Canonical transcript exons
ENST00000639213 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001422058 | 162151730 | 162151753 |
| ENSE00003477526 | 162095495 | 162095562 |
| ENSE00003477712 | 162149108 | 162149313 |
| ENSE00003535086 | 162097638 | 162097858 |
| ENSE00003536104 | 162101235 | 162101317 |
| ENSE00003610094 | 162142164 | 162142316 |
| ENSE00003625954 | 162103889 | 162104026 |
| ENSE00003654309 | 162093828 | 162093979 |
| ENSE00003809373 | 162153093 | 162155526 |
| ENSE00003809572 | 162067773 | 162068106 |
Expression profiles
Bgee: expression breadth ubiquitous, 174 present calls, max score 99.09.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 6.3357 / max 775.0952, expressed in 135 samples.
FANTOM5 promoters (15 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 59960 | 2.1026 | 112 |
| 59959 | 1.1804 | 104 |
| 59953 | 0.7889 | 101 |
| 59949 | 0.5050 | 96 |
| 59952 | 0.4074 | 93 |
| 59955 | 0.3138 | 65 |
| 59950 | 0.2774 | 74 |
| 59958 | 0.1633 | 66 |
| 59954 | 0.1569 | 59 |
| 59957 | 0.1387 | 54 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle temporal gyrus | UBERON:0002771 | 99.09 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.46 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 96.66 | gold quality |
| primary visual cortex | UBERON:0002436 | 96.52 | gold quality |
| postcentral gyrus | UBERON:0002581 | 96.38 | gold quality |
| parietal lobe | UBERON:0001872 | 96.23 | gold quality |
| frontal pole | UBERON:0002795 | 96.18 | gold quality |
| occipital lobe | UBERON:0002021 | 95.58 | gold quality |
| pons | UBERON:0000988 | 95.34 | gold quality |
| prefrontal cortex | UBERON:0000451 | 95.06 | gold quality |
| endothelial cell | CL:0000115 | 94.93 | gold quality |
| entorhinal cortex | UBERON:0002728 | 94.86 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 94.74 | gold quality |
| frontal cortex | UBERON:0001870 | 94.18 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 94.17 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 93.66 | gold quality |
| cerebellar vermis | UBERON:0004720 | 93.56 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.50 | gold quality |
| neocortex | UBERON:0001950 | 93.11 | gold quality |
| cerebellar cortex | UBERON:0002129 | 92.48 | gold quality |
| cerebellum | UBERON:0002037 | 92.43 | gold quality |
| cerebral cortex | UBERON:0000956 | 92.41 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 92.38 | gold quality |
| right frontal lobe | UBERON:0002810 | 92.00 | gold quality |
| paraflocculus | UBERON:0005351 | 91.75 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 91.71 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 90.57 | gold quality |
| cingulate cortex | UBERON:0003027 | 90.34 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 90.31 | gold quality |
| telencephalon | UBERON:0001893 | 89.87 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-93593 | yes | 238.27 |
| E-HCAD-35 | yes | 59.20 |
| E-HCAD-25 | yes | 8.88 |
| E-ANND-3 | yes | 7.45 |
| E-GEOD-84465 | yes | 6.56 |
| E-GEOD-137537 | yes | 6.08 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): EPAS1, FOXO1, HIF1A, IKZF1
miRNA regulators (miRDB)
145 targeting GABRG2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-1229-3P | 99.97 | 66.49 | 906 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- truncation of the GABA(A)-receptor gamma2 subunit in a family with generalized epilepsy with febrile seizures plus (PMID:11748509)
- The GABRG2 gene seems to confer a rare, rather than frequent, major susceptibility effect to common idiopathic absence epilepsy syndromes. (PMID:12117362)
- modeling of molecular configuration (PMID:12225856)
- using full-length or truncated chimeric subunits it was demonstrated that homologous sequences from gamma2 are important for assembly of GABA(A) receptors composed of alpha(1), beta(3), and gamma(2) subunits (PMID:12367595)
- GABRG2 gene might be neither a susceptibility gene for CAE nor in linkage disequilibrium with disease-predisposing sites in the Chinese population (PMID:12384214)
- GABRG2 gene might be one of the susceptibility factors for febrile seizures (PMID:12672902)
- No difference in allele frequency observed for severe myoclonic epilepsy of infancy patients compared to control population. (PMID:12694927)
- In the polymorphic SNPs, significant differences between methamphetamine users and controls were identified in the female sample of the GABA(A)alpha1 subunit gene, and novel SNP in GABA(A)gamma2 subunit gene. No associations were found in the male sample. (PMID:14569258)
- Ser171 and Tyr172 in the GABAA receptor gamma2 subunit constitute a critical motif for access to the cell surface (PMID:14593118)
- Properties of recombinant GABRG2 receptor vary significantly from one expression system to another most likely due to differences in endogenous modulators. (PMID:14625018)
- serine 171 may play a critical role in the formation and stabilization of an exposed turn structure that is part of the subunit interaction site. (PMID:14736867)
- Association of the GABA(B)R1 with the GABA(A) receptor gamma2S subunit robustly promotes cell surface expression of GABA(B)R1 in the absence of GABA(B)R2, that is usually required for efficient trafficking of GABA(B)R1 to the cell surface. (PMID:14966130)
- Human gamma 2L subunit is capable of forming fully functional GABA receptors by itself in Xenopus oocytes. (PMID:14981251)
- Two etomidate sites allosterically enhance GABA(A) receptor subunit gating independently of agonist binding. (PMID:15016806)
- extracellular domain models show subunit arrangement of GABA-A receptors (PMID:15033447)
- Gaba A receptor gamma 1/3 immunolabeling in prefrontal cortex of bipolar disorder subjects was more intense than controls and schizophrenics. There was a significant increase in gamma 1 subunit in bipolar subjects, with no difference in schizophrenics. (PMID:15257153)
- the GABAA receptor mutation linked to human epilepsy (gamma2R43Q) impairs cell surface expression of alphabetagamma receptors (PMID:15342642)
- The GABAA receptor gamma2 subunit R43Q mutation impaired GABA(A) receptor function by compromising receptor trafficking and reducing surface expression. (PMID:15470132)
- Models of GABA(A) receptors composed of alpha1 beta3 gamma2 subunits were generated and were used for predicting putative engineered cross-link sites between the alpha1 and the gamma2 subunit. (PMID:16412095)
- a conserved lysine in the TM2-3 of alpha1, beta2, and gamma2 of the GABA-A receptor has an asymmetric function in different GABAA subunits (PMID:16627470)
- Our results suggest that common variants of strong effect in GABRG2 do not appear to play a role in the development of common, complex forms of epilepsy. (PMID:16806831)
- alpha4beta3gamma2L receptors have unique kinetic properties that limit the range of GABA applications to which they can respond maximally. (PMID:17124266)
- the gamma2 subunit of the GABA receptor gene might be one of the susceptibility factors for idiopathic generalized epilepsies (PMID:17162195)
- In south china, the K289M mutation and single-nucleotide polymorphism rs211014 of the GABRD2 gene not releate to children with febrile seizures. (PMID:17641256)
- study found mutations of GABRA1, GABRB3, and GABRG2 appear not to play a major role in the development of familial primary dystonia (PMID:17880575)
- This suggests that mutations in the GABRG2 gene is not a prevalent cause of familial cases of FS and epilepsy or GEFS+ in Scandinavia. (PMID:17927801)
- In the SNr GABA(A) receptors contain alpha(1), alpha(3), beta(2,3), and gamma(2) subunits and are localized in a weblike network over the cell soma, dendrites, and spines of SNr parvalbumin-positive nonpigmented neurons. (PMID:18085588)
- Febrile Seizure is not related to the most common mutations of GABRG2 in two Tunisian families (PMID:18175077)
- built homology models of the ion pores of alpha1beta2 and alpha1beta2gamma2 GABA(A)-R using coordinates of the nicotinic acetylcholine receptor as a template to determine details about the zinc binding site (PMID:18197653)
- Using wild type/mutated receptor subunits to identify compounds with anesthetic effect. (PMID:18292428)
- Novel ligand-gated gamma aminobutyric acid receptor(GABRG)2 and sodium channel voltage-gated type I alpha subunit (SCN1A) gene mutations are found in two unrelated Chinese families with generalized epilepsy with febrile seizures plus (GEFS+). (PMID:18566737)
- Seizure susceptibility was significantly reduced in mice where the GABRG2 Q43 allele was suppressed during development. (PMID:18825662)
- results of the present study suggest that hippocampal neurons expressing GABAAgamma receptor subunits resist the progression of neurofibrillary degeneration in Alzheimer disease hippocampus (PMID:19019179)
- the mutation of the GABA(A)-receptor gamma 2 subunit gene (GABRG2) in a Chinese family with generalized epilepsy with febrile seizures plus (GEFS+ ) and the genotype-phenotype correlations and its inheritance (PMID:19065515)
- Our results support that SCN1A is the responsible gene for GEFS+ in one of the two studied Tunisian families and suggest a positive association of an intronic SNP in the GABRG2 gene in both families. (PMID:19236456)
- 2(L287A) mutation introduced a modest defect in GABA-induced gating that simultaneously increased propofol potentiation. (PMID:19553237)
- These findings suggest that in the autistic group this downregulation of both benzodiazepine sites and GABA(A) receptors in the ACC. (PMID:19650112)
- The results of the present study suggest that GABRG2 may be involved in SCZ susceptibility, but further studies are required. (PMID:19682861)
- Report interaction of androsterone and progesterone with inhibitory ligand-gated ion channels: a patch clamp study. (PMID:19705103)
- These findings suggest that common variation in the GABRA2, GABRA3, GABRA6, and GABRG2 genes does not play a major role in liability to anxiety spectrum disorders. (PMID:19842164)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gabrg2 | ENSDARG00000053665 |
| mus_musculus | Gabrg2 | ENSMUSG00000020436 |
| rattus_norvegicus | Gabrg2 | ENSRNOG00000003241 |
Paralogs (45): GABRA3 (ENSG00000011677), GABRA1 (ENSG00000022355), CHRNA3 (ENSG00000080644), GABRP (ENSG00000094755), CHRNA4 (ENSG00000101204), GLRA2 (ENSG00000101958), GABRE (ENSG00000102287), CHRNE (ENSG00000108556), GABRA4 (ENSG00000109158), GLRB (ENSG00000109738), GABRR2 (ENSG00000111886), CHRNB4 (ENSG00000117971), CHRNA2 (ENSG00000120903), CHRNA10 (ENSG00000129749), CHRND (ENSG00000135902), CHRNA1 (ENSG00000138435), GLRA3 (ENSG00000145451), GABRA6 (ENSG00000145863), GABRB2 (ENSG00000145864), GLRA1 (ENSG00000145888), GABRR1 (ENSG00000146276), CHRNB3 (ENSG00000147432), CHRNA6 (ENSG00000147434), HTR3B (ENSG00000149305), GABRA2 (ENSG00000151834), CHRNB2 (ENSG00000160716), GABRG1 (ENSG00000163285), GABRB1 (ENSG00000163288), GABRB3 (ENSG00000166206), CHRFAM7A (ENSG00000166664), HTR3A (ENSG00000166736), CHRNA5 (ENSG00000169684), CHRNB1 (ENSG00000170175), CHRNA9 (ENSG00000174343), CHRNA7 (ENSG00000175344), HTR3C (ENSG00000178084), GABRG3 (ENSG00000182256), GABRR3 (ENSG00000183185), HTR3E (ENSG00000186038), HTR3D (ENSG00000186090)
Protein
Protein identifiers
Gamma-aminobutyric acid receptor subunit gamma-2 — P18507 (reviewed: P18507)
Alternative names: GABA(A) receptor subunit gamma-2
All UniProt accessions (20): A0A1W2PP56, A0A1W2PPN5, A0A1W2PPS4, A0A1W2PQ81, A0A1W2PQA6, A0A1W2PQR9, A0A1W2PQX1, A0A1W2PR49, A0A1W2PRM8, A0A1W2PRN4, A0A1W2PRU1, A0A1W2PRY3, A0A1W2PSF4, A0A1X7SBS5, A0A1X7SBZ8, A0A286YFI6, A8MWU7, P18507, E5RGJ0, E5RIG3
UniProt curated annotations — full annotation on UniProt →
Function. Gamma subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain. GABA-gated chloride channels, also named GABA(A) receptors (GABAAR), consist of five subunits arranged around a central pore and contain GABA active binding site(s) located at the alpha and beta subunit interface(s). When activated by GABA, GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Gamma-2/GABRG2-containing GABAARs are found at both synaptic and extrasynaptic sites. Chloride influx into the postsynaptic neuron following GABAAR opening decreases the neuron ability to generate a new action potential, thereby reducing nerve transmission. GABAARs containing alpha-1 and beta-2 or -3 subunits exhibit synaptogenic activity; the gamma-2 subunit being necessary but not sufficient to induce rapid synaptic contacts formation. Extrasynaptic gamma-2-containing receptors contribute to the tonic GABAergic inhibition. GABAARs function also as histamine receptor where histamine binds at the interface of two neighboring beta subunits and potentiates GABA response in a gamma-2 subunit-controlled manner.
Subunit / interactions. Heteropentamer, formed by a combination of alpha (GABRA1-6), beta (GABRB1-3), gamma (GABRG1-3), delta (GABRD), epsilon (GABRE), rho (GABRR1-3), pi (GABRP) and theta (GABRQ) chains, each subunit exhibiting distinct physiological and pharmacological properties. Interacts with GABARAP. Interacts with KIF21B. Identified in a complex of 720 kDa composed of LHFPL4, NLGN2, GABRA1, GABRB2, GABRG2 and GABRB3. Interacts with LHFPL4. Interacts with SHISA7; interaction leads to the regulation of GABA(A) receptor trafficking, channel deactivation kinetics and pharmacology.
Subcellular location. Postsynaptic cell membrane. Cell membrane. Cell projection. Dendrite. Cytoplasmic vesicle membrane.
Post-translational modifications. Palmitoylated by ZDHHC3/GODZ; required for the accumulation of GABA(A) receptors at the postsynaptic membrane of inhibitory GABAergic synapses.
Disease relevance. Developmental and epileptic encephalopathy 74 (DEE74) [MIM:618396] A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE74 is an autosomal dominant form with onset in the first year of life. The gene represented in this entry is involved in disease pathogenesis. Epilepsy, childhood absence 2 (ECA2) [MIM:607681] A subtype of idiopathic generalized epilepsy characterized by an onset at age 6-7 years, frequent absence seizures (several per day) and bilateral, synchronous, symmetric 3-Hz spike waves on EEG. Tonic-clonic seizures often develop in adolescence. Some individuals manifest febrile seizures. Absence seizures may either remit or persist into adulthood. Disease susceptibility is associated with variants affecting the gene represented in this entry. Febrile seizures, familial, 8 (FEB8) [MIM:607681] Seizures associated with febrile episodes in childhood without any evidence of intracranial infection or defined pathologic or traumatic cause. It is a common condition, affecting 2-5% of children aged 3 months to 5 years. The majority are simple febrile seizures (generally defined as generalized onset, single seizures with a duration of less than 30 minutes). Complex febrile seizures are characterized by focal onset, duration greater than 30 minutes, and/or more than one seizure in a 24 hour period. The likelihood of developing epilepsy following simple febrile seizures is low. Complex febrile seizures are associated with a moderately increased incidence of epilepsy. The disease is caused by variants affecting the gene represented in this entry. Generalized epilepsy with febrile seizures plus 3 (GEFSP3) [MIM:607681] A rare autosomal dominant, familial condition with incomplete penetrance and large intrafamilial variability. Patients display febrile seizures persisting sometimes beyond the age of 6 years and/or a variety of afebrile seizure types. This disease combines febrile seizures, generalized seizures often precipitated by fever at age 6 years or more, and partial seizures, with a variable degree of severity. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Allosterically activated by benzodiazepines. Activated by pentobarbital. Potentiated by etomidate, propofol, pregnanolone. Inhibited by the antagonist bicuculline. Inhibited by zinc ions. Potentiated by histamine.
Domain organisation. The extracellular domain contributes to synaptic contact formation. GABAARs subunits share a common topological structure: a peptide sequence made up of a long extracellular N-terminal, four transmembrane domains, intracellular or cytoplasmic domain located between the third and the fourth transmembrane domains.
Similarity. Belongs to the ligand-gated ion channel (TC 1.A.9) family. Gamma-aminobutyric acid receptor (TC 1.A.9.5) subfamily. GABRG2 sub-subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P18507-2 | 1 | yes |
| P18507-1 | 2 | |
| P18507-3 | 3 |
RefSeq proteins (15): NP_000807, NP_001362268, NP_001362269, NP_001362270, NP_001362271, NP_001362272, NP_001362273, NP_001362274, NP_001362275, NP_001362276, NP_001362277, NP_001362278, NP_001362279, NP_944493, NP_944494* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005437 | GABRG-1/4 | Family |
| IPR005439 | GABBAg2_rcpt | Family |
| IPR006028 | GABAA/Glycine_rcpt | Family |
| IPR006029 | Neurotrans-gated_channel_TM | Domain |
| IPR006201 | Neur_channel | Family |
| IPR006202 | Neur_chan_lig-bd | Domain |
| IPR018000 | Neurotransmitter_ion_chnl_CS | Conserved_site |
| IPR036719 | Neuro-gated_channel_TM_sf | Homologous_superfamily |
| IPR036734 | Neur_chan_lig-bd_sf | Homologous_superfamily |
| IPR038050 | Neuro_actylchol_rec | Homologous_superfamily |
Pfam: PF02931, PF02932
Catalyzed reactions (Rhea), 1 shown:
- chloride(in) = chloride(out) (RHEA:29823)
UniProt features (65 total): strand 16, sequence variant 13, helix 8, topological domain 5, sequence conflict 5, turn 5, transmembrane region 4, glycosylation site 3, splice variant 2, signal peptide 1, chain 1, region of interest 1, disulfide bond 1
Structure
Experimental structures (PDB)
75 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8BHG | X-RAY DIFFRACTION | 2.39 |
| 9EQG | ELECTRON MICROSCOPY | 2.4 |
| 9FAS | ELECTRON MICROSCOPY | 2.5 |
| 6X3T | ELECTRON MICROSCOPY | 2.55 |
| 8VRN | ELECTRON MICROSCOPY | 2.57 |
| 9FAJ | ELECTRON MICROSCOPY | 2.6 |
| 9FAK | ELECTRON MICROSCOPY | 2.6 |
| 9FGG | ELECTRON MICROSCOPY | 2.6 |
| 8SGO | ELECTRON MICROSCOPY | 2.65 |
| 7QNE | ELECTRON MICROSCOPY | 2.7 |
| 9FG7 | ELECTRON MICROSCOPY | 2.7 |
| 9FG9 | ELECTRON MICROSCOPY | 2.7 |
| 8SID | ELECTRON MICROSCOPY | 2.71 |
| 9FAP | ELECTRON MICROSCOPY | 2.8 |
| 9FFV | ELECTRON MICROSCOPY | 2.8 |
| 8VQY | ELECTRON MICROSCOPY | 2.82 |
| 6X40 | ELECTRON MICROSCOPY | 2.86 |
| 8DD2 | ELECTRON MICROSCOPY | 2.9 |
| 8DD3 | ELECTRON MICROSCOPY | 2.9 |
| 9CRS | ELECTRON MICROSCOPY | 2.9 |
| 9FAN | ELECTRON MICROSCOPY | 2.9 |
| 9FAQ | ELECTRON MICROSCOPY | 2.9 |
| 9FAR | ELECTRON MICROSCOPY | 2.9 |
| 9FAW | ELECTRON MICROSCOPY | 2.9 |
| 9FAX | ELECTRON MICROSCOPY | 2.9 |
| 9FG8 | ELECTRON MICROSCOPY | 2.9 |
| 9FGF | ELECTRON MICROSCOPY | 2.9 |
| 6X3X | ELECTRON MICROSCOPY | 2.92 |
| 9DRX | ELECTRON MICROSCOPY | 2.95 |
| 8SI9 | ELECTRON MICROSCOPY | 2.98 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P18507-F1 | 77.41 | 0.59 |
Antibody-complex structures (SAbDab): 60 — 6D6T, 6D6U, 6HUG, 6HUJ, 6HUK, 6HUO, 6HUP, 6I53, 6X3S, 6X3T, 6X3U, 6X3V, 6X3W, 6X3X, 6X3Z, 6X40, 7QNA, 7QNB, 7QNE, 7T0W, 7T0Z, 8DD2, 8DD3, 8SGO, 8SI9 (+35 more)
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (1): 190–204
Glycosylation sites (3): 52, 129, 247
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-1236394 | Signaling by ERBB4 |
| R-HSA-977443 | GABA receptor activation |
MSigDB gene sets: 465 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, MODULE_274, GOBP_BEHAVIOR, GOBP_SYNAPSE_ASSEMBLY, LFA1_Q6, GOBP_ADULT_BEHAVIOR, GOBP_INORGANIC_ANION_TRANSPORT, GOBP_GAMMA_AMINOBUTYRIC_ACID_SIGNALING_PATHWAY, TGACCTY_ERR1_Q2, GGGTGGRR_PAX4_03, TTGGGAG_MIR150, GOBP_CELL_CELL_SIGNALING, MODULE_66, PAX8_B, GOBP_CELL_JUNCTION_ORGANIZATION
GO Biological Process (12): gamma-aminobutyric acid signaling pathway (GO:0007214), post-embryonic development (GO:0009791), adult behavior (GO:0030534), synaptic transmission, GABAergic (GO:0051932), cellular response to histamine (GO:0071420), chloride transmembrane transport (GO:1902476), inhibitory synapse assembly (GO:1904862), monoatomic ion transport (GO:0006811), chloride transport (GO:0006821), chemical synaptic transmission (GO:0007268), monoatomic ion transmembrane transport (GO:0034220), regulation of postsynaptic membrane potential (GO:0060078)
GO Molecular Function (9): GABA-A receptor activity (GO:0004890), chloride channel activity (GO:0005254), benzodiazepine receptor activity (GO:0008503), GABA-gated chloride ion channel activity (GO:0022851), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), transmembrane signaling receptor activity (GO:0004888), monoatomic ion channel activity (GO:0005216), extracellular ligand-gated monoatomic ion channel activity (GO:0005230), protein binding (GO:0005515)
GO Cellular Component (17): plasma membrane (GO:0005886), axon (GO:0030424), cytoplasmic vesicle membrane (GO:0030659), dendrite membrane (GO:0032590), chloride channel complex (GO:0034707), dendritic spine (GO:0043197), postsynaptic membrane (GO:0045211), postsynapse (GO:0098794), GABA-ergic synapse (GO:0098982), postsynaptic specialization membrane (GO:0099634), GABA-A receptor complex (GO:1902711), membrane (GO:0016020), dendrite (GO:0030425), cytoplasmic vesicle (GO:0031410), cell projection (GO:0042995), synapse (GO:0045202), synaptic membrane (GO:0097060)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Signaling by Receptor Tyrosine Kinases | 1 |
| Neurotransmitter receptors and postsynaptic signal transmission | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| synapse | 3 |
| cellular anatomical structure | 3 |
| GABA receptor activity | 2 |
| transmitter-gated monoatomic ion channel activity | 2 |
| neuron projection | 2 |
| dendrite | 2 |
| postsynapse | 2 |
| synaptic membrane | 2 |
| cell-cell signaling | 1 |
| multicellular organism development | 1 |
| multicellular organismal process | 1 |
| behavior | 1 |
| chemical synaptic transmission | 1 |
| response to histamine | 1 |
| cellular response to nitrogen compound | 1 |
| chloride transport | 1 |
| monoatomic anion transmembrane transport | 1 |
| synapse assembly | 1 |
| transport | 1 |
| monoatomic anion transport | 1 |
| inorganic anion transport | 1 |
| anterograde trans-synaptic signaling | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| regulation of membrane potential | 1 |
| monoatomic anion channel activity | 1 |
| chloride transmembrane transporter activity | 1 |
| neurotransmitter receptor activity | 1 |
| chloride channel activity | 1 |
| ligand-gated monoatomic anion channel activity | 1 |
| regulation of postsynaptic membrane potential | 1 |
| signaling receptor activity | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| ligand-gated monoatomic ion channel activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| vesicle membrane | 1 |
| cytoplasmic vesicle | 1 |
Protein interactions and networks
STRING
2346 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GABRG2 | SCN1A | P35498 | 945 |
| GABRG2 | SCN1B | Q07699 | 943 |
| GABRG2 | CLCN2 | P51788 | 892 |
| GABRG2 | SCN9A | Q15858 | 861 |
| GABRG2 | GPHN | Q9NQX3 | 739 |
| GABRG2 | CACNA1H | O95180 | 736 |
| GABRG2 | GABBR1 | Q9UBS5 | 700 |
| GABRG2 | SCN2A | Q99250 | 697 |
| GABRG2 | GABARAP | O95166 | 687 |
| GABRG2 | SCN8A | Q9UQD0 | 682 |
| GABRG2 | PCDH19 | Q8TAB3 | 676 |
| GABRG2 | SLC6A1 | P30531 | 634 |
| GABRG2 | GAD1 | Q99259 | 626 |
| GABRG2 | KCNQ2 | O43526 | 614 |
| GABRG2 | PCDH10 | Q9P2E7 | 603 |
IntAct
12 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GABRA1 | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| GABRG2 | GPAA1 | psi-mi:“MI:0914”(association) | 0.530 |
| GABRG2 | NOVA1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GABRA1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| GABRG2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| CFTR | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GABRG2 | B4GALT5 | psi-mi:“MI:0914”(association) | 0.350 |
| GABRA4 | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.320 |
| GABRB3 | GABRG2 | psi-mi:“MI:0915”(physical association) | 0.320 |
BioGRID (34): GABRG1 (Affinity Capture-MS), TUBB1 (Affinity Capture-MS), DNAJC18 (Affinity Capture-MS), BSCL2 (Affinity Capture-MS), B4GALT5 (Affinity Capture-MS), CANX (Affinity Capture-MS), GPAA1 (Affinity Capture-MS), LCLAT1 (Affinity Capture-MS), ABHD14A (Affinity Capture-MS), CPT1A (Affinity Capture-MS), GABRG2 (FRET), BSCL2 (Affinity Capture-MS), GABRG2 (Protein-peptide), USP33 (Affinity Capture-MS), GABRG1 (Affinity Capture-MS)
ESM2 similar proteins: D1LYT2, O94925, P08219, P08220, P0C2W5, P10063, P10064, P14867, P15431, P16305, P18505, P18507, P18508, P19019, P19150, P19969, P20236, P21548, P22300, P22723, P23574, P23576, P24045, P26048, P26049, P27681, P28472, P28473, P30191, P31644, P34903, P47869, P47870, P50571, P62812, P62813, P63079, P63080, P63137, P63138
Diamond homologs: A8MPY1, D1LYT2, F1R8P4, G5EBR3, O00591, O09028, O14764, O18276, O75311, O93430, P07727, P08219, P08220, P0C2W5, P10063, P10064, P14867, P15431, P16305, P18505, P18506, P18507, P18508, P19019, P19150, P19969, P20236, P20237, P20781, P21548, P22300, P22723, P22771, P22933, P23415, P23416, P23574, P23576, P24045, P24046
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GABRG2 | “form complex” | “GABA-A (a1-b1-g2) receptor” | binding |
| GABRG2 | “form complex” | “GABA-A (a2-b1-g2) receptor” | binding |
| GABRG2 | “form complex” | “GABA-A (a3-b1-g2) receptor” | binding |
| GABRG2 | “form complex” | “GABA-A (a4-b1-g2) receptor” | binding |
| GABRG2 | “form complex” | “GABA-A (a6-b1-g2) receptor” | binding |
| GABRG2 | “form complex” | “GABA-A (a5-b1-g2) receptor” | binding |
| PRKCE | “down-regulates activity” | GABRG2 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
796 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 84 |
| Likely pathogenic | 52 |
| Uncertain significance | 341 |
| Likely benign | 198 |
| Benign | 35 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1066278 | NM_198904.4(GABRG2):c.769+1G>A | Pathogenic |
| 1069676 | NC_000005.9:g.(?161495006)(161580374_?)del | Pathogenic |
| 1071103 | NM_198904.4(GABRG2):c.429dup (p.Lys144fs) | Pathogenic |
| 1073528 | NM_198904.4(GABRG2):c.1277del (p.Phe426fs) | Pathogenic |
| 1075793 | NM_198904.4(GABRG2):c.1224_1225insCA (p.Asp409fs) | Pathogenic |
| 127233 | NM_198904.4(GABRG2):c.247C>T (p.Pro83Ser) | Pathogenic |
| 1352245 | NM_198904.4(GABRG2):c.917C>T (p.Ser306Phe) | Pathogenic |
| 1385670 | NC_000005.9:g.(?161569150)(161580374_?)del | Pathogenic |
| 1457057 | NM_198904.4(GABRG2):c.498del (p.Asn167fs) | Pathogenic |
| 1457679 | NC_000005.9:g.(?161520814)(161580374_?)del | Pathogenic |
| 1459641 | NC_000005.9:g.(?161495006)(161495132_?)del | Pathogenic |
| 1459966 | NC_000005.9:g.(?161495006)(161569342_?)del | Pathogenic |
| 1460159 | NC_000005.9:g.(?161495006)(161528343_?)del | Pathogenic |
| 1460405 | NC_000005.9:g.(?161495006)(161531052_?)del | Pathogenic |
| 1508087 | NM_198904.4(GABRG2):c.929C>T (p.Thr310Ile) | Pathogenic |
| 1516815 | NM_198904.4(GABRG2):c.940A>T (p.Thr314Ser) | Pathogenic |
| 153230 | GRCh38/hg38 5q34(chr5:161954028-162107018)x1 | Pathogenic |
| 16207 | NM_198904.4(GABRG2):c.983A>T (p.Lys328Met) | Pathogenic |
| 16208 | NM_198904.4(GABRG2):c.245G>A (p.Arg82Gln) | Pathogenic |
| 16209 | NM_198904.4(GABRG2):c.1192C>T (p.Gln398Ter) | Pathogenic |
| 16210 | NM_198904.4(GABRG2):c.769+2T>G | Pathogenic |
| 16211 | NM_198904.4(GABRG2):c.529C>G (p.Arg177Gly) | Pathogenic |
| 1685837 | NM_198904.4(GABRG2):c.929C>G (p.Thr310Ser) | Pathogenic |
| 1993170 | NM_198904.4(GABRG2):c.386del (p.Asn129fs) | Pathogenic |
| 2012801 | NM_198904.4(GABRG2):c.570C>A (p.Cys190Ter) | Pathogenic |
| 2018794 | NM_198904.4(GABRG2):c.852_858del (p.Leu285fs) | Pathogenic |
| 2027142 | NM_198904.4(GABRG2):c.363G>A (p.Trp121Ter) | Pathogenic |
| 205540 | NM_198904.4(GABRG2):c.406C>T (p.Arg136Ter) | Pathogenic |
| 205545 | NM_198904.4(GABRG2):c.770-1G>A | Pathogenic |
| 205546 | NM_198904.4(GABRG2):c.844C>A (p.Pro282Thr) | Pathogenic |
SpliceAI
1393 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:162093823:CTTA:C | acceptor_loss | 1.0000 |
| 5:162093826:A:AG | acceptor_gain | 1.0000 |
| 5:162093827:G:GG | acceptor_gain | 1.0000 |
| 5:162093827:GCT:G | acceptor_gain | 1.0000 |
| 5:162093827:GCTTC:G | acceptor_gain | 1.0000 |
| 5:162093943:G:GT | donor_gain | 1.0000 |
| 5:162093976:GGAG:G | donor_gain | 1.0000 |
| 5:162093976:GGAGG:G | donor_loss | 1.0000 |
| 5:162093977:G:GT | donor_gain | 1.0000 |
| 5:162093977:GAGG:G | donor_loss | 1.0000 |
| 5:162093978:AGGTT:A | donor_loss | 1.0000 |
| 5:162093979:GGTT:G | donor_loss | 1.0000 |
| 5:162093980:G:GA | donor_loss | 1.0000 |
| 5:162095492:C:G | acceptor_gain | 1.0000 |
| 5:162095492:CA:C | acceptor_loss | 1.0000 |
| 5:162095493:A:AG | acceptor_gain | 1.0000 |
| 5:162095493:AGT:A | acceptor_gain | 1.0000 |
| 5:162095494:G:A | acceptor_loss | 1.0000 |
| 5:162095494:G:GA | acceptor_gain | 1.0000 |
| 5:162095494:GT:G | acceptor_gain | 1.0000 |
| 5:162095494:GTG:G | acceptor_gain | 1.0000 |
| 5:162095494:GTGA:G | acceptor_gain | 1.0000 |
| 5:162095494:GTGAA:G | acceptor_gain | 1.0000 |
| 5:162095559:TATGG:T | donor_loss | 1.0000 |
| 5:162095561:TGGT:T | donor_loss | 1.0000 |
| 5:162095562:GGTGA:G | donor_loss | 1.0000 |
| 5:162095563:G:GA | donor_loss | 1.0000 |
| 5:162095563:G:GG | donor_gain | 1.0000 |
| 5:162095564:TGA:T | donor_loss | 1.0000 |
| 5:162095565:GAG:G | donor_loss | 1.0000 |
AlphaMissense
3087 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:162093938:T:C | L73P | 1.000 |
| 5:162093962:T:C | L81P | 1.000 |
| 5:162093967:C:T | P83S | 1.000 |
| 5:162093968:C:A | P83H | 1.000 |
| 5:162095539:G:C | G102R | 1.000 |
| 5:162095562:G:A | M109I | 1.000 |
| 5:162095562:G:C | M109I | 1.000 |
| 5:162095562:G:T | M109I | 1.000 |
| 5:162097666:A:C | Q119P | 1.000 |
| 5:162097671:T:A | W121R | 1.000 |
| 5:162097671:T:C | W121R | 1.000 |
| 5:162097673:G:C | W121C | 1.000 |
| 5:162097673:G:T | W121C | 1.000 |
| 5:162097677:G:T | D123Y | 1.000 |
| 5:162097678:A:T | D123V | 1.000 |
| 5:162097684:G:C | R125P | 1.000 |
| 5:162097687:T:C | L126S | 1.000 |
| 5:162097692:T:C | F128L | 1.000 |
| 5:162097694:T:A | F128L | 1.000 |
| 5:162097694:T:G | F128L | 1.000 |
| 5:162097746:T:A | W146R | 1.000 |
| 5:162097746:T:C | W146R | 1.000 |
| 5:162097747:G:C | W146S | 1.000 |
| 5:162097748:G:C | W146C | 1.000 |
| 5:162097748:G:T | W146C | 1.000 |
| 5:162097752:C:T | P148S | 1.000 |
| 5:162097753:C:A | P148Q | 1.000 |
| 5:162097753:C:G | P148R | 1.000 |
| 5:162097755:G:C | D149H | 1.000 |
| 5:162097811:C:A | N167K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000003327 (5:162102918 A>T), RS1000013998 (5:162145946 A>G), RS1000047317 (5:162142682 A>G), RS1000103452 (5:162154368 T>C), RS1000149634 (5:162070486 T>A), RS1000152505 (5:162146299 A>C), RS1000152696 (5:162111051 C>A), RS1000155960 (5:162154041 A>C), RS1000177549 (5:162139360 G>GT), RS1000196892 (5:162092640 C>T), RS1000210968 (5:162096089 C>G), RS1000238043 (5:162135474 T>C), RS1000255870 (5:162092845 T>C,G), RS1000266086 (5:162090556 T>C), RS1000282926 (5:162116256 T>C)
Disease associations
OMIM: gene MIM:137164 | disease phenotypes: MIM:607681, MIM:611277, MIM:618396, MIM:118220, MIM:600513, MIM:308350, MIM:606369, MIM:117100, MIM:600669, MIM:611136
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| epilepsy | Definitive | Autosomal dominant |
| febrile seizures, familial, 8 | Strong | Autosomal dominant |
| developmental and epileptic encephalopathy, 74 | Strong | Autosomal dominant |
| self-limited epilepsy with centrotemporal spikes | Supportive | Autosomal dominant |
| Dravet syndrome | Supportive | Autosomal dominant |
| generalized epilepsy with febrile seizures plus | Supportive | Autosomal dominant |
| undetermined early-onset epileptic encephalopathy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| epilepsy | Definitive | AD |
Mondo (17): febrile seizures, familial, 8 (MONDO:0011891), developmental and epileptic encephalopathy, 74 (MONDO:0032725), Charcot-Marie-Tooth disease (MONDO:0015626), sudden unexplained death in childhood (MONDO:1010117), familial sleep-related hypermotor epilepsy (MONDO:0000030), genetic developmental and epileptic encephalopathy (MONDO:0100062), epilepsy (MONDO:0005027), Lennox-Gastaut syndrome (MONDO:0016532), self-limited epilepsy with centrotemporal spikes (MONDO:0007295), intellectual disability (MONDO:0001071), idiopathic generalized epilepsy (MONDO:0005579), epilepsy, idiopathic generalized, susceptibility to, 13 (MONDO:0012627), esophageal atresia (MONDO:0001044), pyloric stenosis (MONDO:0001561), (MONDO:0011794)
Orphanet (8): Genetic epilepsy with febrile seizure plus (Orphanet:36387), Childhood absence epilepsy (Orphanet:64280), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166), Sleep-related hypermotor epilepsy (Orphanet:98784), Lennox-Gastaut syndrome (Orphanet:2382), Self-limited epilepsy with centrotemporal spikes (Orphanet:1945), Juvenile myoclonic epilepsy (Orphanet:307), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
143 total (30 of 143 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000020 | Urinary incontinence |
| HP:0000252 | Microcephaly |
| HP:0000348 | High forehead |
| HP:0000466 | Limited neck range of motion |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000504 | Abnormality of vision |
| HP:0000508 | Ptosis |
| HP:0000546 | Retinal degeneration |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000668 | Hypodontia |
| HP:0000708 | Atypical behavior |
| HP:0000712 | Emotional lability |
| HP:0000716 | Depression |
| HP:0000717 | Autism |
| HP:0000729 | Autistic behavior |
| HP:0000736 | Short attention span |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0000980 | Pallor |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001265 | Hyporeflexia |
| HP:0001266 | Choreoathetosis |
| HP:0001268 | Mental deterioration |
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003075_70 | Cognitive decline rate in late mild cognitive impairment | 6.000000e-07 |
| GCST003123_15 | Severe influenza A (H1N1) infection | 2.000000e-13 |
| GCST003265_56 | Post bronchodilator FEV1/FVC ratio in COPD | 3.000000e-06 |
| GCST004029_39 | Angiotensin-converting enzyme inhibitor intolerance | 8.000000e-09 |
| GCST010105_171 | Nicotine dependence symptom count | 5.000000e-06 |
| GCST010105_92 | Nicotine dependence symptom count | 5.000000e-06 |
| GCST011140_3 | Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes) | 3.000000e-06 |
| GCST012490_440 | Femur bone mineral density x serum urate levels interaction | 3.000000e-08 |
| GCST012490_54 | Femur bone mineral density x serum urate levels interaction | 2.000000e-11 |
| GCST90000014_2 | Parkinson’s disease motor subtype (tremor dominant vs postural instability/gait difficulty) | 2.000000e-06 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007710 | cognitive decline measurement |
| EFO:1001488 | influenza A (H1N1) |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0005325 | response to angiotensin-converting enzyme inhibitor |
| EFO:0009262 | nicotine dependence symptom count |
| EFO:0008463 | glucagon measurement |
| EFO:0004531 | urate measurement |
MeSH disease descriptors (12)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| D004827 | Epilepsy | C10.228.140.490 |
| D004933 | Esophageal Atresia | C06.198.330; C06.405.117.260; C16.131.314.330 |
| D017219 | Gastric Outlet Obstruction | C06.405.748.340 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065768 | Lennox Gastaut Syndrome | C10.228.140.490.493.750; C16.320.495 |
| D011707 | Pyloric Stenosis | C06.405.748.340.690 |
| C579932 | Autosomal Dominant Nocturnal Frontal Lobe Epilepsy (supp.) | |
| C567002 | Epilepsy, Childhood Absence, Susceptibility To, 4 (supp.) | |
| C562694 | Epilepsy, Idiopathic Generalized (supp.) | |
| C565811 | Generalized Epilepsy With Febrile Seizures Plus, Type 3 (supp.) | |
| C565808 | Generalized Epilepsy with Febrile Seizures Plus (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (18): CHEMBL2093872 (PROTEIN COMPLEX GROUP), CHEMBL2094120 (PROTEIN COMPLEX), CHEMBL2094121 (PROTEIN COMPLEX), CHEMBL2094122 (PROTEIN COMPLEX), CHEMBL2094130 (PROTEIN COMPLEX), CHEMBL2095172 (PROTEIN COMPLEX), CHEMBL2095190 (PROTEIN COMPLEX), CHEMBL2109243 (PROTEIN COMPLEX GROUP), CHEMBL2111339 (PROTEIN COMPLEX), CHEMBL2111366 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
55 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 532,203 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1082407 | ENZALUTAMIDE | 4 | 9,652 |
| CHEMBL12 | DIAZEPAM | 4 | 92,281 |
| CHEMBL1544 | LIOTHYRONINE | 4 | 23,700 |
| CHEMBL1568698 | GANAXOLONE | 4 | 1,657 |
| CHEMBL207538 | BREXANOLONE | 4 | 1,585 |
| CHEMBL3183409 | APALUTAMIDE | 4 | 4,076 |
| CHEMBL407 | FLUMAZENIL | 4 | 7,150 |
| CHEMBL452 | CLONAZEPAM | 4 | 33,297 |
| CHEMBL13280 | FLUNITRAZEPAM | 4 | 11,549 |
| CHEMBL451 | CHLORDIAZEPOXIDE | 4 | 36,533 |
| CHEMBL646 | TRIAZOLAM | 4 | 21,589 |
| CHEMBL911 | ZOLPIDEM | 4 | 17,821 |
| CHEMBL15891 | LINDANE | 4 | 83,653 |
| CHEMBL526 | PROPOFOL | 4 | 28,835 |
| CHEMBL1521 | ZALEPLON | 4 | 9,958 |
| CHEMBL1983350 | STIRIPENTOL | 4 | 2,890 |
| CHEMBL4105630 | ZURANOLONE | 4 | 290 |
| CHEMBL661 | ALPRAZOLAM | 4 | 130,677 |
| CHEMBL681 | ETOMIDATE | 4 | 8,462 |
| CHEMBL1522 | ESZOPICLONE | 4 | 6,548 |
| CHEMBL448 | PENTOBARBITAL | 4 | |
| CHEMBL1014 | CANDESARTAN CILEXETIL | 4 | |
| CHEMBL1064 | SIMVASTATIN | 4 | |
| CHEMBL1106 | EPINASTINE | 4 | |
| CHEMBL146095 | GLAFENINE | 4 | |
| CHEMBL222559 | TIPRANAVIR | 4 | |
| CHEMBL297302 | BENPERIDOL | 4 | |
| CHEMBL3187365 | ASENAPINE | 4 | |
| CHEMBL408 | TROGLITAZONE | 4 | |
| CHEMBL42 | CLOZAPINE | 4 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs211037 | GABRG2 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: lgic — GABAA receptors
Binding affinities (BindingDB)
370 measured of 382 human assays (385 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-5,6-dihydropyridin-2(1H)-one | KI | 0.27 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (R)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-one | KI | 0.39 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(5-Chloropyridin-2-yl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 0.46 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[5-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]pyrido[2,3-d]pyridazin-8-yl]piperazin-2-one | KI | 0.49 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)imidazolidin-2-one | KI | 0.52 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-2-fluoro-7,8,9,10-tetrahydro-5H-pyrazino[1,2-a]pyrido[3,2-e]pyrazin-6(6aH)-one | KI | 0.54 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (9aR)-8-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]pyridazin-3-yl]-1,3,4,7,9,9a-hexahydropyrazino[2,1-c][1,4]oxazin-6-one | KI | 0.55 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-5-methylpyridazin-3-yl]piperazin-2-one | KI | 0.56 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-3-methylpiperazin-2-one | KI | 0.58 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 7-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyrazine | KI | 0.6 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-4-methylpyridazin-3-yl]piperazin-2-one | KI | 0.63 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(5-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyrido[2,3-d]pyridazin-8-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-one | KI | 0.64 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(2-morpholinoethyl)piperazin-2-one | KI | 0.67 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-ethyl-1,2,5,6-tetrahydropyridine-3-carboxamide | KI | 0.67 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| Halcion | KI | 0.68 nM | |
| (9aR)-8-[6-[[5-chloro-3-[4-(difluoromethyl)phenyl]triazol-4-yl]methoxy]pyridazin-3-yl]-1,3,4,7,9,9a-hexahydropyrazino[2,1-c][1,4]oxazin-6-one | KI | 0.71 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 3-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)-6-(5,6-dihydro-2H-pyran-3-yl)pyridazine | KI | 0.75 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-7,8,9,10-tetrahydro-5H-pyrazino[1,2-a]pyrido[3,2-e]pyrazin-6(6aH)-one | KI | 0.8 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(1-methyl-1H-pyrazol-3-yl)piperazin-2-one | KI | 0.81 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-(hydroxymethyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 0.82 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-1H-pyrazino[1,2-a]pyrazin-4-(6H)-one | KI | 0.84 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1H-2-imidazolyl[6-phenyl-4,5,7,8-tetraazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraen-9-yloxy]methane | KI | 0.87 nM | |
| 7-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-4,7-diazaspiro[2.5]octan-5-one | KI | 0.89 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N,N-dimethylpyrrolidin-3-amine | KI | 0.89 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-methylhexahydro-1H-pyrazino[1,2-a]pyrazin-4(6H)-one | KI | 0.9 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6-methylpiperazin-2-one | KI | 0.91 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(1-methyl-1H-pyrazol-4-yl)piperazin-2-one | KI | 0.93 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazine-2,6-dione | KI | 0.96 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((4-(Difluoromethyl)-1-(4-(difluoromethyl)phenyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 0.96 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6,6-dimethylpiperazin-2-one | KI | 1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-[6-[[3-[4-(difluoromethyl)phenyl]-5-methyltriazol-4-yl]methoxy]-4-methoxypyridazin-3-yl]piperazin-2-one | KI | 1.05 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-1-yl)ethan-1-one | KI | 1.07 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)-2-fluorophenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 1.08 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-phenylazetidine-3-carboxamide | KI | 1.1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(pyridin-4-yl)azetidine-3-carboxamide | KI | 1.1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-(pyrimidin-2-ylmethyl)octahydro-4H-pyrazino[1,2-a]pyrazin-4-one | KI | 1.1 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(Cyclopropylmethyl)-4-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 1.11 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(5-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyrazin-2-yl)piperazin-2-one | KI | 1.11 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-8-(2,2,2-trifluoroethyl)octahydro-4H-pyrazino[1,2-a]pyrazin-4-one | KI | 1.13 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(1-methyl-1H-pyrazol-3-yl)azetidine-3-carboxamide | KI | 1.15 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(1-(Difluoromethyl)-1H-pyrazol-4-yl)-4-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)piperazin-2-one | KI | 1.17 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-1-(2,2,2-trifluoroethyl)piperazin-2-one | KI | 1.18 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-3H-imidazo[5,1-c][1,4]oxazin-3-one | KI | 1.19 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-8-(6-((4-Chloro-1-(4-(difluoromethyl)phenyl)-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydro-2H-pyrazino[1,2-a]pyrazin-1(6H)-one | KI | 1.21 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (S)-2-(6-((1-(4-(difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)hexahydropyrrolo[1,2-a]pyrazin-4(1H)-one | KI | 1.24 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 4-(6-[(1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy]pyridin-3-yl)piperazin-2-one | KI | 1.24 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 9-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-6-oxa-2-thia-9-azaspiro[4.5]decane 2,2-dioxide | KI | 1.24 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 2-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-ethyl-2-azabicyclo[2.1.1]hexane-1-carboxamide | KI | 1.25 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| (3S,9aR)-8-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)tetrahydro-1H-3,9a-methanopyrazino[2,1-c][1,4]oxazin-6(7H)-one | KI | 1.26 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
| 1-(6-((1-(4-(Difluoromethyl)phenyl)-4-methyl-1H-1,2,3-triazol-5-yl)methoxy)pyridazin-3-yl)-N-(1-methyl-1H-pyrazol-4-yl)azetidine-3-carboxamide | KI | 1.27 nM | US-20250136581: SUBSTITUTED TRIAZOLE DERIVATIVE, PREPARATION METHOD THEREFOR, PHARMACEUTICAL COMPOSITION THEREOF, AND USE THEREOF |
ChEMBL bioactivities
4309 potent at pChembl≥5 of 4573 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.70 | Ki | 0.02 | nM | CHEMBL3144696 |
| 10.52 | Ki | 0.03 | nM | CHEMBL3144849 |
| 10.40 | Ki | 0.04 | nM | CHEMBL3144849 |
| 10.30 | Ki | 0.05 | nM | PHENAZEPAM |
| 10.30 | Ki | 0.05 | nM | CGS-8216 |
| 10.30 | Ki | 0.05 | nM | CHEMBL4243764 |
| 10.22 | Ki | 0.06 | nM | PHENAZEPAM |
| 10.22 | Ki | 0.06 | nM | CHEMBL3144696 |
| 10.22 | Ki | 0.06 | nM | CHEMBL4243764 |
| 10.15 | Ki | 0.07 | nM | CHEMBL3144849 |
| 10.10 | Ki | 0.08 | nM | CHEMBL3144696 |
| 10.10 | Ki | 0.08 | nM | CGS-8216 |
| 10.10 | Ki | 0.08 | nM | CHEMBL4243764 |
| 10.05 | Ki | 0.09 | nM | CHEMBL3144841 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL454349 |
| 10.00 | Ki | 0.1 | nM | CHEMBL436768 |
| 10.00 | Ki | 0.1 | nM | CHEMBL202696 |
| 10.00 | Ki | 0.1 | nM | CHEMBL203286 |
| 10.00 | Ki | 0.1 | nM | CHEMBL378761 |
| 10.00 | Ki | 0.1 | nM | CHEMBL211704 |
| 10.00 | Ki | 0.1 | nM | CHEMBL3144841 |
| 9.96 | Ki | 0.11 | nM | CHEMBL380110 |
| 9.96 | Ki | 0.11 | nM | CHEMBL3144841 |
| 9.92 | Ki | 0.12 | nM | CHEMBL199957 |
| 9.92 | Ki | 0.12 | nM | CHEMBL4476044 |
| 9.92 | Ki | 0.12 | nM | CHEMBL487686 |
| 9.92 | Ki | 0.12 | nM | CHEMBL488283 |
| 9.92 | Ki | 0.12 | nM | CHEMBL469477 |
| 9.92 | Ki | 0.12 | nM | PHENAZEPAM |
| 9.92 | Ki | 0.12 | nM | CHEMBL3144615 |
| 9.92 | Ki | 0.12 | nM | CGS-8216 |
| 9.92 | Ki | 0.12 | nM | CHEMBL4243764 |
| 9.85 | Ki | 0.14 | nM | CHEMBL383677 |
| 9.85 | Ki | 0.14 | nM | CHEMBL212008 |
| 9.85 | Ki | 0.14 | nM | CHEMBL225631 |
| 9.85 | Ki | 0.14 | nM | CHEMBL487687 |
| 9.85 | Ki | 0.14 | nM | CHEMBL1644826 |
| 9.85 | Ki | 0.14 | nM | CHEMBL130609 |
| 9.85 | Ki | 0.14 | nM | CHEMBL10483 |
| 9.82 | Ki | 0.15 | nM | CHEMBL202343 |
| 9.82 | Ki | 0.15 | nM | CHEMBL206587 |
| 9.82 | Ki | 0.15 | nM | CHEMBL3274851 |
| 9.82 | Ki | 0.15 | nM | CHEMBL300615 |
| 9.80 | IC50 | 0.16 | nM | CHEMBL309517 |
| 9.80 | Ki | 0.16 | nM | CHEMBL206380 |
| 9.77 | Ki | 0.17 | nM | CHEMBL375742 |
| 9.77 | Ki | 0.17 | nM | CHEMBL50763 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3144849 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3144615 |
| 9.77 | Ki | 0.17 | nM | CHEMBL299210 |
PubChem BioAssay actives
2932 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-(4-ethynylphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 73089: Binding affinity to human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-2-beta-3-gamma-2 | ki | <0.0001 | uM |
| 8-ethynyl-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2 | ki | <0.0001 | uM |
| 1,4,5,6-tetrahydropyrimidine-5-carboxylic acid | 1184360: Agonist activity at human GABAAalpha1beta2gamma2S receptor expressed in tsA-201cells by FLIPR membrane potential blue assay | ec50 | <0.0001 | uM |
| 6-amino-2-methylpyridine-3-carboxylic acid | 1184360: Agonist activity at human GABAAalpha1beta2gamma2S receptor expressed in tsA-201cells by FLIPR membrane potential blue assay | ec50 | <0.0001 | uM |
| piperidine-4-carboxylic acid | 1184360: Agonist activity at human GABAAalpha1beta2gamma2S receptor expressed in tsA-201cells by FLIPR membrane potential blue assay | ec50 | <0.0001 | uM |
| 8-methoxy-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0001 | uM |
| 2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 40988: Inhibition on Benzodiazepine receptor | ic50 | 0.0001 | uM |
| 5-fluoro-2-[2-fluoro-5-[7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]benzonitrile | 259132: Displacement of [3H]Ro-151788 from human recombinant GABAA alpha5 in combination with beta3gamma2 expressed in L(tk-) cells | ki | 0.0001 | uM |
| 8-chloro-2-phenyl-1H-pyrazolo[4,3-c]quinolin-3-one | 73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2 | ki | 0.0001 | uM |
| tert-butyl 8-hydroxy-5-methyl-6-oxo-4H-imidazo[1,5-a][1,4]benzodiazepine-3-carboxylate | 73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2 | ki | 0.0001 | uM |
| 3-phenyl-6-(pyridazin-3-ylmethoxy)-[1,2,4]triazolo[3,4-a]phthalazine | 72625: Binding affinity for human GABA-A receptor alpha-5-beta-3-gamma-2 subunits in L(tk-) cells | ki | 0.0001 | uM |
| 2-[5-(7-ethyl-8-oxoimidazo[1,2-a]pyrazin-3-yl)-2-fluorophenyl]-5-fluorobenzonitrile | 262297: Displacement of [3H]Ro-151788 from human recombinant GABA-Aalpha5 receptor plus beta3gamma2 | ki | 0.0001 | uM |
| 3,5-difluoro-2-[2-fluoro-5-[3-(2-hydroxypropan-2-yl)imidazo[1,2-b][1,2,4]triazin-7-yl]phenyl]benzonitrile | 260334: Displacement of [3H]Ro 15-1788 from recombinant human GABAA alpha-1 receptor plus beta3gamma2 expressed in L(tk-) cells | ki | 0.0001 | uM |
| 7-tert-butyl-6-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-phenyl-[1,2,4]triazolo[4,3-b]pyridazine | 282667: Displacement of [3H]Ro 15-1788 from human recombinant GABAA alpha-3-beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 3-(2,6-difluorophenyl)-5-[4-fluoro-3-(3-fluoro-2-pyridinyl)phenyl]pyridazine | 262644: Displacement of [3H]Ro-151788 from recombinant human GABA-Aalpha1 receptor plus beta3gamma2 | ki | 0.0001 | uM |
| 7-bromo-5-(2-fluorophenyl)-1,3-dihydro-1,4-benzodiazepin-2-one | 1889907: Displacement of [3H]flunitrazepam from human recombinant alpha2beta2gamma2 GABAA receptor expressed in HEK cell membrane by competitive radioligand binding assay | ki | 0.0001 | uM |
| ethyl 6-methoxy-4-(methoxymethyl)-9H-pyrido[3,4-b]indole-3-carboxylate | 219791: Binding affinity measured using LtK- cell membranes expressing GABA alpha-1-beta-3-gamma-2 receptor | ki | 0.0001 | uM |
| 2-(4-methylphenyl)-9-(2-thiophen-3-ylethyl)-6H-[1,2,4]triazolo[4,3-c]quinazoline-3,5-dione | 552801: Displacement of [3H]flumazenil human recombinant alpha1beta3gamma2 GABA(A) receptor expressed in HEK293 cells after 30 mins by glass fiber filtration assay | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-thiophen-3-ylpyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 2-[3-[5-(2-hydroxypropan-2-yl)benzimidazol-1-yl]phenyl]benzonitrile | 1604549: Displacement of [3H]-Ro15-1788 from human GABAA alpha5beta3gamma2 expressed in HEK293 cell membranes incubated for 40 or 90 mins by liquid scintillation counting method | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-3-(furan-2-yl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]pyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-3-thiophen-2-ylpyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0001 | uM |
| 7-bromo-5-(2-chlorophenyl)-1,3-dihydro-1,4-benzodiazepin-2-one | 1889906: Displacement of [3H]flunitrazepam from human recombinant alpha1beta2gamma2 GABAA receptor expressed in HEK cell membrane by competitive radioligand binding assay | ki | 0.0001 | uM |
| 2-phenyl-3aH-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0001 | uM |
| 2-[2-fluoro-5-[8-fluoro-7-(2-hydroxypropan-2-yl)imidazo[1,2-a]pyridin-3-yl]phenyl]benzonitrile | 262219: Displacement of [3H]Ro 15-1788 from human GABA-Aalpha1 receptor plus beta-3-gamma-2 expressed in mouse L(tk-) cells | ki | 0.0002 | uM |
| 8-chloro-2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 1388015: Displacement of [3H]Ro15-1788 from human GABAA receptor alpha1beta3gamma2 expressed in LTK cells preincubated for 30 secs measured every 15 mins at -60 mV holding potential by two-electrode voltage clamp assay | ki | 0.0002 | uM |
| [7-chloro-3-(5-cyclopropyl-1,2,4-oxadiazol-3-yl)-4H-imidazo[1,5-a]quinoxalin-5-yl]-morpholin-4-ylmethanone | 72905: Displacement of [3H]flunitrazepam from GABA-A receptor alpha-1-beta-2-gamma-2 subunits expressed in Sf9 cells | ki | 0.0002 | uM |
| tert-butyl (7S)-14-bromo-12-oxo-2,4,11-triazatetracyclo[11.4.0.02,6.07,11]heptadeca-1(17),3,5,13,15-pentaene-5-carboxylate | 73244: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-3-beta-3-gamma-2 | ki | 0.0002 | uM |
| [3-(5-cyclopropyl-1,2,4-oxadiazol-3-yl)-6-fluoro-4H-imidazo[1,5-a]quinoxalin-5-yl]-morpholin-4-ylmethanone | 72906: Displacement of [3H]Flunitrazepam from GABA-A receptor alpha-1-beta-2-gamma-2 subunits expressed in Sf9 cells | ki | 0.0002 | uM |
| 6-phenyl-9-[(2-propyl-1,2,4-triazol-3-yl)methoxy]-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene | 239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cells | ki | 0.0002 | uM |
| 9-[(1-benzylimidazol-2-yl)methoxy]-6-phenyl-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene | 239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cells | ki | 0.0002 | uM |
| 6-[(1-methylimidazol-2-yl)methoxy]-3-phenyl-[1,2,4]triazolo[3,4-a]phthalazine | 72620: Binding affinity for human GABA-A receptor alpha-3-beta-3-gamma-2 subunits in L(tk-) cells | ki | 0.0002 | uM |
| 9-[(3,5-dimethyl-2-pyridinyl)methoxy]-6-phenyl-4,5,7,8-tetrazatetracyclo[9.2.2.02,10.03,7]pentadeca-2(10),3,5,8-tetraene | 239566: Inhibition of [3H]Ro-151788 binding to recombinant human gamma-aminobutyric-acid A receptor alpha-5-beta-3-gamma-2 subtype expressed in L (tk-) cells | ki | 0.0002 | uM |
| ethyl 15-methoxy-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| ethyl 4-(methoxymethyl)-5-phenylmethoxy-9H-pyrido[3,4-b]indole-3-carboxylate | 1932290: Displacement of [3H]flunitrazepam from GABAA (unknown origin ) receptor by radioligand binding assay | ic50 | 0.0002 | uM |
| 2-(4-chlorophenyl)-6,7,8,9-tetrahydro-1H-pyrazolo[4,3-c]quinolin-3-one | 221780: In vitro binding affinity against gamma-aminobutyric acid A receptor, alpha 1 expressed in L(tk) cells by displacement of [3H]Ro-151788 | ki | 0.0002 | uM |
| 2-(4-bromophenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0002 | uM |
| 3-(2,5-difluorophenyl)-7-(2-fluorophenyl)-2-[(2-methyl-1,2,4-triazol-3-yl)methoxy]pyrazolo[1,5-d][1,2,4]triazine | 267883: Inhibition of [3H]Ro15-1788 binding to human recombinant GABA-Aalpha3 plus beta-3-gamma-2 receptor expressed in L(tk-) cells | ki | 0.0002 | uM |
| 3-(15-fluoro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaen-5-yl)-5-methyl-1,2,4-oxadiazole | 468635: Displacement of [3H]Flumazenil from cloned human GABA alpha-5-beta-3-gamma-2 receptor expressed in HEK293 cells | ki | 0.0002 | uM |
| ethyl 2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(17),3,5,9,11,13,15-heptaene-5-carboxylate | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| ethyl 15-chloro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate | 448426: Binding affinity to GABAA alpha-5-beta-3-gamma-2 receptor | ki | 0.0002 | uM |
| ethyl 15-fluoro-2,4,8,9,11-pentazatetracyclo[11.4.0.02,6.08,12]heptadeca-1(13),3,5,9,11,14,16-heptaene-5-carboxylate | 468641: Displacement of [3H]Flumazenil from human GABA alpha-5-beta-3-gamma-2 receptor expressed in insect SF9 cells | ki | 0.0002 | uM |
| 7-cyclobutyl-3-(2,6-difluorophenyl)-6-[(2-methyl-1,2,4-triazol-3-yl)methoxy]-[1,2,4]triazolo[4,3-b]pyridazine | 1604538: Displacement of [3H]-flumazenil from human GABAA alpha1beta3gamma2 expressed in Ltk cells | ki | 0.0002 | uM |
| Flumazenil | 1798656: Radioligand Binding Assay from Article 10.1021/jm800889m: “Structural Requirements for Eszopiclone and Zolpidem Binding to the gamma-Aminobutyric Acid Type-A (GABAA) Receptor Are Different.” | ki | 0.0002 | uM |
| 4-[2-fluoro-5-[3-(2-hydroxypropan-2-yl)imidazo[1,2-b][1,2,4]triazin-7-yl]phenyl]pyridine-3-carbonitrile | 262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cells | ki | 0.0003 | uM |
| 4-fluoro-2-[2-fluoro-5-[7-(trifluoromethyl)imidazo[1,2-a]pyrimidin-3-yl]phenyl]benzonitrile | 259132: Displacement of [3H]Ro-151788 from human recombinant GABAA alpha5 in combination with beta3gamma2 expressed in L(tk-) cells | ki | 0.0003 | uM |
| 2-[3-(4-fluoro-3-pyridin-4-ylphenyl)imidazo[1,2-a]pyrimidin-7-yl]propan-2-ol | 262147: Displacement of [3H]Ro 15-1788 from recombinant human GABA-Aalpha5 receptor plus beta-3-gamma-2 expressed in L(tk-) cells | ki | 0.0003 | uM |
| 7-methoxy-2-(4-methoxyphenyl)-1H-pyrazolo[4,3-c]quinolin-3-one | 72927: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-1-beta-3-gamma-2 | ki | 0.0003 | uM |
| tert-butyl 8-azido-5-methyl-6-oxo-4H-imidazo[1,5-a][1,4]benzodiazepine-3-carboxylate | 73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2 | ki | 0.0003 | uM |
| ethyl (7S)-14-bromo-11-oxo-2,4,10-triazatetracyclo[10.4.0.02,6.07,10]hexadeca-1(16),3,5,12,14-pentaene-5-carboxylate | 73523: Binding affinity for human recombinant gamma-aminobutyric-acid (GABA) A receptor alpha-5-beta-3-gamma-2 | ki | 0.0003 | uM |
CTD chemical–gene interactions
89 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| gamma-Aminobutyric Acid | increases reaction, affects binding, decreases reaction, increases activity, affects cotreatment (+1 more) | 17 |
| Valproic Acid | affects cotreatment, increases expression, affects expression | 6 |
| Propofol | increases reaction, affects reaction, affects cotreatment, affects binding, decreases reaction (+1 more) | 4 |
| 1-(3-chlorophenyl)piperazine | increases reaction, affects cotreatment, affects reaction, increases activity, affects binding (+2 more) | 3 |
| Hexachlorocyclohexane | affects binding, decreases reaction, increases activity, increases reaction | 3 |
| Diazepam | affects binding, increases activity, increases reaction, affects response to substance | 3 |
| 2,4,2’,4’-tetrachlorobiphenyl | decreases reaction, affects binding, increases activity, affects cotreatment, increases reaction | 2 |
| tert-butylbicyclophosphorothionate | affects binding, decreases reaction | 2 |
| delta-hexachlorocyclohexane | decreases activity, affects binding, affects cotreatment, increases activity, increases reaction (+1 more) | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Flunitrazepam | increases reaction, increases activity, affects reaction, affects binding | 2 |
| Methamphetamine | decreases reaction, increases activity, increases response to substance, affects cotreatment | 2 |
| Pentobarbital | affects binding, decreases reaction, increases activity, increases reaction, affects cotreatment | 2 |
| Picrotoxin | decreases reaction, increases activity, affects binding | 2 |
| 3,4-Methylenedioxyamphetamine | affects cotreatment, affects reaction, increases activity, affects binding, decreases activity (+1 more) | 2 |
| 6-methoxyflavone | affects binding, increases activity, increases reaction | 1 |
| 6-methoxyflavanone | increases activity, increases reaction, affects binding | 1 |
| beta-thujone | affects binding, decreases reaction, increases activity | 1 |
| 1-benzylpiperazine | decreases reaction, increases activity, affects binding | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| carvone | affects binding, increases activity, increases reaction | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | affects binding, affects cotreatment, increases activity | 1 |
| tetramethylenedisulfotetramine | affects binding, decreases reaction, increases activity, increases reaction | 1 |
| trichostatin A | increases expression | 1 |
| 2,4,5,2’,4’,5’-hexachlorobiphenyl | affects binding, decreases reaction, increases activity | 1 |
| arsenite | increases methylation | 1 |
| bromoform | affects activity, affects binding | 1 |
| sodium arsenite | increases expression | 1 |
| 1-(3-trifluoromethylphenyl)piperazine | increases activity, affects binding, decreases reaction | 1 |
| menthone | affects binding, increases activity, increases reaction | 1 |
ChEMBL screening assays
1155 unique, capped per target: 940 binding, 201 functional, 10 admet, 4 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3363914 | Binding | Displacement of [3H]Muscimol from rat GABAA receptor at 10 uM after 90 mins by microbeta counting analysis | Griseorhodins D-F, neuroactive intermediates and end products of post-PKS tailoring modification in Griseorhodin biosynthesis. — J Nat Prod |
| CHEMBL4810229 | ADMET | Inhibition of GABA A receptor (unknown origin) at 0.1 to 1 uM | Discovery of Pemigatinib: A Potent and Selective Fibroblast Growth Factor Receptor (FGFR) Inhibitor. — J Med Chem |
| CHEMBL5335653 | Toxicity | Antagonist activity at GABA-A (unknown origin) | Discovery of a Novel Bifunctional Steroid Analog, YXG-158, as an Androgen Receptor Degrader and CYP17A1 Inhibitor for the Treatment of Enzalutamide-Resistant Prostate Cancer. — J Med Chem |
Cellosaurus cell lines
14 cell lines: 7 transformed cell line, 3 cancer cell line, 3 spontaneously immortalized cell line, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_AY57 | GM25431 | Finite cell line | Female |
| CVCL_B8GM | Abcam HCT 116 GABRG2 KO | Cancer cell line | Male |
| CVCL_B8W7 | Abcam MCF-7 GABRG2 KO | Cancer cell line | Female |
| CVCL_B9IV | Abcam A-549 GABRG2 KO | Cancer cell line | Male |
| CVCL_C0XQ | B’SYS CHO alpha1beta2gamma2 GABA(A) | Spontaneously immortalized cell line | Female |
| CVCL_C0YP | CHO-K1 GABA(A)R alpha1beta2gamma2L | Spontaneously immortalized cell line | Female |
| CVCL_C5TV | GABAA1-CHO | Spontaneously immortalized cell line | Female |
| CVCL_C9E7 | B’SYS LTK alpha1beta2gamma2 GABA(A) | Transformed cell line | Male |
| CVCL_D1JK | PrecisION hGABAA alpha1/beta3/gamma2-HEK | Transformed cell line | Female |
| CVCL_D1JL | PrecisION hGABAA alpha3/beta3/gamma2-HEK | Transformed cell line | Female |
Clinical trials (associated diseases)
372 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00004637 | PHASE4 | COMPLETED | Double-Blind, Placebo-Controlled Trial of Vitamin E as Add-on Therapy for Children With Epilepsy |
| NCT00043914 | PHASE4 | COMPLETED | Measurement Of Serum Levels Of Two Antiepileptic Drugs During Conversion In Patients With Epilepsy |
| NCT00132223 | PHASE4 | UNKNOWN | Effects on the Diagnostic Accuracy of Magnetic Imaging Angiographies of the Supra-Aortic Vessels by Three Different Magnetic Resonance Contrast Agents in Patients |
| NCT00133081 | PHASE4 | UNKNOWN | Study to Improve the Treatment of Epilepsy (SITE) |
| NCT00137709 | PHASE4 | UNKNOWN | Hormone Profiles in Adults With Newly Diagnosed Epilepsy |
| NCT00154076 | PHASE4 | COMPLETED | A Multicenter Comparative Trial of Zonisamide and Topiramate as Initial Monotherapy in Untreated Epilepsies |
| NCT00165828 | PHASE4 | TERMINATED | Efficacy and Safety of an add-on Treatment With Zonisamide in Adults With Focal Epileptic Seizures With or Without Secondary Generalization |
| NCT00181116 | PHASE4 | COMPLETED | Levetiracetam for Benign Rolandic Epilepsy |
| NCT00207935 | PHASE4 | COMPLETED | Use of Sustained Release Antiepileptic Medication (Depakote® ER) for Pediatric Epilepsy in a Mental Retardation/Developmental Disorder Population |
| NCT00215592 | PHASE4 | COMPLETED | Open Label, Zonegran (Zonisamide) In Partial Onset Seizures |
| NCT00266604 | PHASE4 | COMPLETED | A Study to Evaluate the Dosing, Effectiveness and Safety of Topiramate for the Treatment of Epilepsy |
| NCT00288639 | PHASE4 | COMPLETED | Lyrica (Pregabalin) Administered as an Add-on Therapy for Partial Seizures (LEADER). |
| NCT00312676 | PHASE4 | UNKNOWN | Compare Tolerability of an Overnight Switch to Gradual Switch Between Two Different Forms of Depakote |
| NCT00323947 | PHASE4 | COMPLETED | Methylphenidate for Treating Attention Deficit Hyperactivity Disorder in Children With Both ADHD and Epilepsy |
| NCT00385411 | PHASE4 | COMPLETED | Study of Valproate in Young Patients Suffering From Epilepsy |
| NCT00522418 | PHASE4 | TERMINATED | Study Comparing Best Medical Practice With or Without VNS Therapy in Pharmacoresistant Partial Epilepsy Patients |
| NCT00537940 | PHASE4 | COMPLETED | Comparative Study Of Pregabalin And Gabapentin As Adjunctive Therapy In Subjects With Partial Seizures |
| NCT00552526 | PHASE4 | UNKNOWN | Ketogenic Diet vs.Antiepileptic Drug Treatment in Drug Resistant Epilepsy |
| NCT00564915 | PHASE4 | COMPLETED | RCT of the Efficacy of the Ketogenic Diet in the Treatment of Epilepsy |
| NCT00571155 | PHASE4 | COMPLETED | Trial of Levetiracetam in Patients With Primary Brain Tumors and Symptomatic Seizures Who Undergo Surgery |
| NCT00572195 | PHASE4 | COMPLETED | RNS® System LTT Study |
| NCT00610532 | PHASE4 | TERMINATED | Evaluating the Transporter Protein Inhibitor Probenecid In Patients With Epilepsy |
| NCT00630357 | PHASE4 | COMPLETED | Trial to Evaluate the Safety and Efficacy of Keppra After Conversion to Mono-therapy in Subjects With Partial Epilepsy |
| NCT00630630 | PHASE4 | COMPLETED | Study on Safety and Efficacy of Levetiracetam in the Adjunctive Treatment of Female Subjects With C1 Catamenial Epilepsy |
| NCT00630968 | PHASE4 | COMPLETED | S.K.A.T.E.: Safety of Keppra as Adjunctive Therapy in Epilepsy |
| NCT00631150 | PHASE4 | COMPLETED | A Phase IV-Pharmacovigilance Study of Keppra Greece - S.K.A.T.E.: Safety of Keppra as Adjunctive Therapy in Epilepsy |
| NCT00659958 | PHASE4 | COMPLETED | ZAGAL Study: Evaluating Effectiveness and Tolerability of Zonisamide as Adjunctive Therapy in Patients With Partial Onset Seizures Treated With Two Antiepileptic Drugs |
| NCT00713622 | PHASE4 | COMPLETED | Comparing The Effect On Cognition Of Adjunctive Therapy With Zonisamide Versus Sodium Valproate |
| NCT00807989 | PHASE4 | COMPLETED | The Efficacy and Safety of Low Dose Combination of LTG and VPA Compared to CBZ Monotherapy |
| NCT00832884 | PHASE4 | COMPLETED | The Safety of Intravenous Lacosamide |
| NCT00869622 | PHASE4 | COMPLETED | Antiepileptic Drugs and Osteoporotic Prevention Trial |
| NCT00896987 | PHASE4 | COMPLETED | Lamotrigine Cognitive Function Study in Adult Untreated Epilepsies |
| NCT00952081 | PHASE4 | COMPLETED | A Pilot Study to Evaluate Efficacy and Safety of Clevidipine in Neurosurgical Patients |
| NCT01118455 | PHASE4 | TERMINATED | Trial to Assess Vagus Nerve Stimulation Therapy vs. Anti-Epileptic Drug (AED) Treatment in Children With Refractory Seizures |
| NCT01127165 | PHASE4 | COMPLETED | Low and High Dose Zonisamide in Children as Monotherapy |
| NCT01127256 | PHASE4 | COMPLETED | Comparative Study of Zonisamide and Carbamazepine as an Initial Monotherapy: Efficacy and Safety Evaluation |
| NCT01140867 | PHASE4 | COMPLETED | Open-label, Multi-center Trial of Zonisamide as Adjunctive Therapy in Patients With Uncontrolled Partial Epilepsy |
| NCT01175954 | PHASE4 | COMPLETED | Cognitive and Behavioral Effects of Lacosamide |
| NCT01229735 | PHASE4 | COMPLETED | Levetiracetam Versus Topiramate as Adjunctive Therapy to Evaluate Efficacy and Safety in Subjects With Refractory Partial Onset Seizures |
| NCT01244724 | PHASE4 | TERMINATED | Lexapro for Major Depression in Patients With Epilepsy |
Related Atlas pages
- Associated diseases: febrile seizures, familial, 8, epilepsy, developmental and epileptic encephalopathy, 74, self-limited epilepsy with centrotemporal spikes, Dravet syndrome, generalized epilepsy with febrile seizures plus, undetermined early-onset epileptic encephalopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease, developmental and epileptic encephalopathy, 74, epilepsy, epilepsy, idiopathic generalized, susceptibility to, 13, esophageal atresia, familial sleep-related hypermotor epilepsy, febrile seizures, familial, 8, generalized epilepsy with febrile seizures plus, genetic developmental and epileptic encephalopathy, idiopathic generalized epilepsy, Lennox-Gastaut syndrome, pyloric stenosis, self-limited epilepsy with centrotemporal spikes, sudden unexplained death in childhood, undetermined early-onset epileptic encephalopathy