GABRR2
gene geneOn this page
Summary
GABRR2 (gamma-aminobutyric acid type A receptor subunit rho2, HGNC:4091) is a protein-coding gene on chromosome 6q15, encoding Gamma-aminobutyric acid receptor subunit rho-2 (P28476). Rho subunit of the pentameric ligand-gated chloride channels responsible for mediating the effects of gamma-aminobutyric acid (GABA), the major inhibitory neurotransmitter in the brain.
Gamma-aminobutyric acid (GABA) is the major inhibitory neurotransmitter in the mammalian brain where it acts at GABA receptors, which are ligand-gated chloride channels. The protein encoded by this gene is a member of the rho subunit family and is a component of the GABA type A receptor complex. This gene exists on chromosome 6q next to the gene encoding the rho 1 subunit of the GABA type A receptor, in a region thought to be associated with susceptibility for psychiatric disorders and epilepsy. Polymorphisms in this gene may also be associated with alcohol dependence, and general cognitive ability.
Source: NCBI Gene 2570 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 99 total
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002043
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4091 |
| Approved symbol | GABRR2 |
| Name | gamma-aminobutyric acid type A receptor subunit rho2 |
| Location | 6q15 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000111886 |
| Ensembl biotype | protein_coding |
| OMIM | 137162 |
| Entrez | 2570 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 1 protein_coding, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000402938, ENST00000602432, ENST00000602808
RefSeq mRNA: 1 — MANE Select: NM_002043
NM_002043
CCDS: CCDS5020
Canonical transcript exons
ENST00000402938 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000760414 | 89269011 | 89269234 |
| ENSE00000798183 | 89254464 | 89257981 |
| ENSE00003605857 | 89315053 | 89315299 |
| ENSE00003624291 | 89264412 | 89264608 |
| ENSE00003625760 | 89265613 | 89265765 |
| ENSE00003633619 | 89268014 | 89268096 |
| ENSE00003641133 | 89271655 | 89271722 |
| ENSE00003672158 | 89299759 | 89299865 |
| ENSE00003679631 | 89267679 | 89267819 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 86.91.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0160 / max 10.3375, expressed in 3 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 74687 | 0.0077 | 3 |
| 74686 | 0.0056 | 3 |
| 74685 | 0.0027 | 3 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| type B pancreatic cell | CL:0000169 | 86.91 | gold quality |
| olfactory bulb | UBERON:0002264 | 86.55 | gold quality |
| diaphragm | UBERON:0001103 | 78.96 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 78.27 | gold quality |
| vena cava | UBERON:0004087 | 76.93 | silver quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 76.77 | gold quality |
| quadriceps femoris | UBERON:0001377 | 74.79 | gold quality |
| vastus lateralis | UBERON:0001379 | 74.52 | gold quality |
| oocyte | CL:0000023 | 74.23 | gold quality |
| thymus | UBERON:0002370 | 73.87 | gold quality |
| body of tongue | UBERON:0011876 | 73.14 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 72.75 | gold quality |
| cardia of stomach | UBERON:0001162 | 72.71 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 72.65 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 72.62 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 72.37 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 72.30 | gold quality |
| ileal mucosa | UBERON:0000331 | 72.05 | silver quality |
| male germ cell | CL:0000015 | 72.03 | silver quality |
| saphenous vein | UBERON:0007318 | 71.94 | gold quality |
| cervix epithelium | UBERON:0004801 | 71.80 | gold quality |
| upper arm skin | UBERON:0004263 | 71.55 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 71.48 | gold quality |
| secondary oocyte | CL:0000655 | 71.25 | gold quality |
| biceps brachii | UBERON:0001507 | 71.18 | gold quality |
| cerebellar vermis | UBERON:0004720 | 71.15 | gold quality |
| nipple | UBERON:0002030 | 71.04 | gold quality |
| trachea | UBERON:0003126 | 70.95 | gold quality |
| deltoid | UBERON:0001476 | 70.88 | silver quality |
| pericardium | UBERON:0002407 | 70.68 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.39 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
109 targeting GABRR2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-6753-3P | 99.93 | 66.57 | 637 |
| HSA-MIR-7107-3P | 99.93 | 66.73 | 627 |
| HSA-MIR-8087 | 99.90 | 69.55 | 1351 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-383-3P | 99.85 | 65.84 | 1359 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
Literature-anchored findings (GeneRIF, showing 8)
- Molecular modeling of ligand-receptor interactions of gamma-aminobutyric acid type C receptor rho1, human. (PMID:19167917)
- GABRR1 and GABRR2 encode the GABA-A receptor subunits rho1 and rho2 and are associated with alcohol dependence (PMID:19536785)
- association between serum creatinine level and polymorphisms in the collagen type XXII alpha 1 (COL22A1) gene, on chromosome 8, and in the synaptotagmin-1 (SYT1) gene, on chromosome 12 (PMID:20222955)
- found no significant differences in either the frequencies of the GABRR1-M26V, GABRR1- H27R, GABRR2-T455M, and GABRR3-Y205X genotypes or in the frequencies of the allelic variants of these polymorphisms in patients with essential tremor (PMID:20820800)
- significant involvement of alpha (GABRA6) and beta (GABRB2) subunits of GABA(A) receptor in epilepsy susceptibility in north Indian population (PMID:21420396)
- GABRR2 and CHRNA3 were found to be differentially expressed after risperidone treatment. These genes may be regulated by antipsychotic use. (PMID:24113126)
- The genetic variant of GABRR2 gene contributes to the difference of individuals’ general cognitive ability in a Chinese Han population. (PMID:26922432)
- GABAergic genes interacting with parenting in adolescent depressive symptoms: GABRR2 X perceived parental support interaction. (PMID:28660714)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gabrr2b | ENSDARG00000014057 |
| danio_rerio | gabrr2a | ENSDARG00000052982 |
| mus_musculus | Gabrr2 | ENSMUSG00000023267 |
| rattus_norvegicus | Gabrr2 | ENSRNOG00000007490 |
Paralogs (45): GABRA3 (ENSG00000011677), GABRA1 (ENSG00000022355), CHRNA3 (ENSG00000080644), GABRP (ENSG00000094755), CHRNA4 (ENSG00000101204), GLRA2 (ENSG00000101958), GABRE (ENSG00000102287), CHRNE (ENSG00000108556), GABRA4 (ENSG00000109158), GLRB (ENSG00000109738), GABRG2 (ENSG00000113327), CHRNB4 (ENSG00000117971), CHRNA2 (ENSG00000120903), CHRNA10 (ENSG00000129749), CHRND (ENSG00000135902), CHRNA1 (ENSG00000138435), GLRA3 (ENSG00000145451), GABRA6 (ENSG00000145863), GABRB2 (ENSG00000145864), GLRA1 (ENSG00000145888), GABRR1 (ENSG00000146276), CHRNB3 (ENSG00000147432), CHRNA6 (ENSG00000147434), HTR3B (ENSG00000149305), GABRA2 (ENSG00000151834), CHRNB2 (ENSG00000160716), GABRG1 (ENSG00000163285), GABRB1 (ENSG00000163288), GABRB3 (ENSG00000166206), CHRFAM7A (ENSG00000166664), HTR3A (ENSG00000166736), CHRNA5 (ENSG00000169684), CHRNB1 (ENSG00000170175), CHRNA9 (ENSG00000174343), CHRNA7 (ENSG00000175344), HTR3C (ENSG00000178084), GABRG3 (ENSG00000182256), GABRR3 (ENSG00000183185), HTR3E (ENSG00000186038), HTR3D (ENSG00000186090)
Protein
Protein identifiers
Gamma-aminobutyric acid receptor subunit rho-2 — P28476 (reviewed: P28476)
Alternative names: GABA(A) receptor subunit rho-2, GABA(C) receptor
All UniProt accessions (1): P28476
UniProt curated annotations — full annotation on UniProt →
Function. Rho subunit of the pentameric ligand-gated chloride channels responsible for mediating the effects of gamma-aminobutyric acid (GABA), the major inhibitory neurotransmitter in the brain. Rho-containing GABA-gated chloride channels are a subclass of GABA(A) receptors (GABAARs) entirely composed of rho subunits, where GABA molecules bind at the rho intersubunit interfaces. When activated by GABA, rho-GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Rho-2 GABAARs may contribute to the regulation of glial development in the cerebellum by controlling extrasynaptic transmission. Rho-2 GABAARs are also involved in neuronal tonic (extrasynaptic) and phasic (synaptic) transmission in the Purkinje neurons of the cerebellum. Rho-2 GABAARs expressed in retina may play a role in retinal neurotransmission.
Subunit / interactions. Three rho subunits (rho-1/GBRR1, rho-2/GBRR2 and rho-3/GBRR3) coassemble either to form functional homopentamers or heteropentamers. Rho-2 is unable to form a functional homopentamer. Interacts with SQSTM1.
Subcellular location. Postsynaptic cell membrane. Cell membrane.
Domain organisation. GABAARs subunits share a common topological structure: a peptide sequence made up of a long extracellular N-terminal, four transmembrane domains, intracellular or cytoplasmic domain located between the third and the fourth transmembrane domains.
Miscellaneous. Isoform 2 could be translated from an upstream initiator ATG located in frame within the first coding exon. The probability of a signal peptide within this isoform is very low.
Similarity. Belongs to the ligand-gated ion channel (TC 1.A.9) family. Gamma-aminobutyric acid receptor (TC 1.A.9.5) subfamily. GABRR2 sub-subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P28476-1 | 1 | yes |
| P28476-2 | 2 |
RefSeq proteins (1): NP_002034* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006028 | GABAA/Glycine_rcpt | Family |
| IPR006029 | Neurotrans-gated_channel_TM | Domain |
| IPR006201 | Neur_channel | Family |
| IPR006202 | Neur_chan_lig-bd | Domain |
| IPR008057 | GABAAa_rho_rcpt | Family |
| IPR008059 | GABAAa_rho2_rcpt | Family |
| IPR018000 | Neurotransmitter_ion_chnl_CS | Conserved_site |
| IPR036719 | Neuro-gated_channel_TM_sf | Homologous_superfamily |
| IPR036734 | Neur_chan_lig-bd_sf | Homologous_superfamily |
| IPR038050 | Neuro_actylchol_rec | Homologous_superfamily |
Pfam: PF02931, PF02932
Catalyzed reactions (Rhea), 1 shown:
- chloride(in) = chloride(out) (RHEA:29823)
UniProt features (19 total): topological domain 5, transmembrane region 4, binding site 3, glycosylation site 2, signal peptide 1, chain 1, disulfide bond 1, splice variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P28476-F1 | 77.00 | 0.48 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 105 (in chain a); 169 (in chain a); 197 (in chain b)
Disulfide bonds (1): 178–192
Glycosylation sites (2): 120, 254
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-977443 | GABA receptor activation |
MSigDB gene sets: 166 (showing top):
chr6q15, GOBP_INORGANIC_ANION_TRANSPORT, GOBP_GAMMA_AMINOBUTYRIC_ACID_SIGNALING_PATHWAY, GOBP_CELL_CELL_SIGNALING, GOBP_CHLORIDE_TRANSPORT, GOBP_REGULATION_OF_POSTSYNAPTIC_MEMBRANE_POTENTIAL, GOBP_SENSORY_PERCEPTION_OF_LIGHT_STIMULUS, KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION, MODULE_99, GOBP_SYNAPTIC_SIGNALING, GOBP_SENSORY_PERCEPTION, CREBP1_01, REACTOME_TRANSMISSION_ACROSS_CHEMICAL_SYNAPSES, GOBP_TRANSMEMBRANE_TRANSPORT, LIU_CDX2_TARGETS_UP
GO Biological Process (10): signal transduction (GO:0007165), gamma-aminobutyric acid signaling pathway (GO:0007214), chemical synaptic transmission (GO:0007268), visual perception (GO:0007601), synaptic transmission, GABAergic (GO:0051932), chloride transmembrane transport (GO:1902476), monoatomic ion transport (GO:0006811), chloride transport (GO:0006821), monoatomic ion transmembrane transport (GO:0034220), regulation of postsynaptic membrane potential (GO:0060078)
GO Molecular Function (8): GABA-A receptor activity (GO:0004890), protein domain specific binding (GO:0019904), GABA-gated chloride ion channel activity (GO:0022851), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), transmembrane signaling receptor activity (GO:0004888), monoatomic ion channel activity (GO:0005216), extracellular ligand-gated monoatomic ion channel activity (GO:0005230), chloride channel activity (GO:0005254)
GO Cellular Component (8): plasma membrane (GO:0005886), chloride channel complex (GO:0034707), postsynaptic membrane (GO:0045211), intracellular vesicle (GO:0097708), GABA-ergic synapse (GO:0098982), GABA-A receptor complex (GO:1902711), membrane (GO:0016020), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Neurotransmitter receptors and postsynaptic signal transmission | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| GABA receptor activity | 2 |
| transmitter-gated monoatomic ion channel activity | 2 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cell-cell signaling | 1 |
| anterograde trans-synaptic signaling | 1 |
| sensory perception of light stimulus | 1 |
| chemical synaptic transmission | 1 |
| chloride transport | 1 |
| monoatomic anion transmembrane transport | 1 |
| transport | 1 |
| monoatomic anion transport | 1 |
| inorganic anion transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| regulation of membrane potential | 1 |
| protein binding | 1 |
| chloride channel activity | 1 |
| ligand-gated monoatomic anion channel activity | 1 |
| regulation of postsynaptic membrane potential | 1 |
| signaling receptor activity | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| ligand-gated monoatomic ion channel activity | 1 |
| monoatomic anion channel activity | 1 |
| chloride transmembrane transporter activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| monoatomic ion channel complex | 1 |
| synaptic membrane | 1 |
| postsynapse | 1 |
| intracellular anatomical structure | 1 |
| vesicle | 1 |
| intracellular membrane-bounded organelle | 1 |
| synapse | 1 |
| GABA receptor complex | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
710 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GABRR2 | EYS | Q5T1H1 | 547 |
| GABRR2 | GABBR2 | O75899 | 447 |
| GABRR2 | PM20D2 | Q8IYS1 | 429 |
| GABRR2 | GABRG2 | P18507 | 408 |
| GABRR2 | GABRQ | Q9UN88 | 408 |
| GABRR2 | CHRNA2 | Q15822 | 364 |
| GABRR2 | CDC45 | O75419 | 363 |
| GABRR2 | MTMR4 | Q9NYA4 | 353 |
| GABRR2 | KCNV2 | Q8TDN2 | 339 |
| GABRR2 | TMEM145 | Q8NBT3 | 323 |
| GABRR2 | CARMIL3 | Q8ND23 | 323 |
| GABRR2 | RUNDC3A | Q59EK9 | 321 |
| GABRR2 | GRIN2C | Q14957 | 307 |
| GABRR2 | NRSN2 | Q9GZP1 | 307 |
| GABRR2 | RNGTT | O60942 | 305 |
IntAct
0 interactions, top by confidence:
ESM2 similar proteins: A8MPY1, F1R8P4, O75311, O93430, P02713, P02714, P02715, P02716, P02717, P02718, P04759, P05376, P09628, P09660, P09690, P20782, P22770, P22771, P23415, P23416, P24046, P24524, P25110, P26714, P28476, P43144, P47742, P49580, P49582, P50572, P50573, P54244, P56475, P56476, P57695, Q05941, Q07001, Q08832, Q0II76, Q24352
Diamond homologs: A8MPY1, D1LYT2, F1R8P4, G5EBR3, O00591, O09028, O14764, O18276, O75311, O93430, P07727, P08219, P08220, P0C2W5, P10063, P10064, P14867, P15431, P16305, P18505, P18506, P18507, P18508, P19019, P19150, P19969, P20236, P20237, P20781, P21548, P22300, P22723, P22771, P22933, P23415, P23416, P23574, P23576, P24045, P24046
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
99 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 81 |
| Likely benign | 4 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1955 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:89257982:C:CC | acceptor_gain | 1.0000 |
| 6:89264408:TCAC:T | donor_loss | 1.0000 |
| 6:89264409:CACCT:C | donor_loss | 1.0000 |
| 6:89264410:A:AC | donor_gain | 1.0000 |
| 6:89264410:A:AT | donor_loss | 1.0000 |
| 6:89264411:C:CC | donor_gain | 1.0000 |
| 6:89264411:C:T | donor_loss | 1.0000 |
| 6:89264411:CCTT:C | donor_gain | 1.0000 |
| 6:89264606:TACCT:T | acceptor_loss | 1.0000 |
| 6:89264607:ACCTG:A | acceptor_loss | 1.0000 |
| 6:89264608:CCT:C | acceptor_loss | 1.0000 |
| 6:89264609:C:A | acceptor_loss | 1.0000 |
| 6:89264610:T:G | acceptor_loss | 1.0000 |
| 6:89270034:C:T | acceptor_gain | 1.0000 |
| 6:89271627:CG:C | donor_gain | 1.0000 |
| 6:89271720:GGCCT:G | acceptor_loss | 1.0000 |
| 6:89271722:CCT:C | acceptor_loss | 1.0000 |
| 6:89271723:C:CC | acceptor_gain | 1.0000 |
| 6:89271724:T:C | acceptor_loss | 1.0000 |
| 6:89257990:A:T | acceptor_gain | 0.9900 |
| 6:89259124:T:TA | donor_gain | 0.9900 |
| 6:89264426:T:TA | donor_gain | 0.9900 |
| 6:89264431:T:A | donor_gain | 0.9900 |
| 6:89264606:TAC:T | acceptor_gain | 0.9900 |
| 6:89264609:C:CC | acceptor_gain | 0.9900 |
| 6:89265761:CCAGC:C | acceptor_gain | 0.9900 |
| 6:89265762:CAGCC:C | acceptor_gain | 0.9900 |
| 6:89267756:T:C | donor_gain | 0.9900 |
| 6:89269007:CTAC:C | donor_loss | 0.9900 |
| 6:89269010:C:CA | donor_loss | 0.9900 |
AlphaMissense
3100 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:89269123:A:G | W134R | 1.000 |
| 6:89269123:A:T | W134R | 1.000 |
| 6:89264505:G:C | S331R | 0.999 |
| 6:89264505:G:T | S331R | 0.999 |
| 6:89264507:T:G | S331R | 0.999 |
| 6:89267785:C:A | W210C | 0.999 |
| 6:89267785:C:G | W210C | 0.999 |
| 6:89267787:A:G | W210R | 0.999 |
| 6:89267787:A:T | W210R | 0.999 |
| 6:89267798:A:G | L206P | 0.999 |
| 6:89268015:G:C | S198R | 0.999 |
| 6:89268015:G:T | S198R | 0.999 |
| 6:89268017:T:G | S198R | 0.999 |
| 6:89269016:G:C | S169R | 0.999 |
| 6:89269016:G:T | S169R | 0.999 |
| 6:89269018:T:G | S169R | 0.999 |
| 6:89269023:A:G | L167P | 0.999 |
| 6:89269121:C:A | W134C | 0.999 |
| 6:89269121:C:G | W134C | 0.999 |
| 6:89269199:C:A | W108C | 0.999 |
| 6:89269199:C:G | W108C | 0.999 |
| 6:89269201:A:G | W108R | 0.999 |
| 6:89269201:A:T | W108R | 0.999 |
| 6:89269209:C:G | R105P | 0.999 |
| 6:89264474:A:G | Y342H | 0.998 |
| 6:89265613:C:G | G297R | 0.998 |
| 6:89265653:G:C | F283L | 0.998 |
| 6:89265653:G:T | F283L | 0.998 |
| 6:89265655:A:G | F283L | 0.998 |
| 6:89265664:A:G | W280R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000026747 (6:89283259 A>G), RS1000136585 (6:89289045 A>G), RS1000172919 (6:89266816 C>G,T), RS1000220423 (6:89305840 T>G), RS1000275558 (6:89308966 G>A), RS1000303870 (6:89288708 A>G), RS1000363965 (6:89301949 C>T), RS1000411057 (6:89296028 G>A,T), RS1000651232 (6:89299916 G>A,T), RS1000717363 (6:89301249 C>T), RS1000724860 (6:89272611 G>A), RS1000727771 (6:89287723 C>G), RS1000782658 (6:89254605 G>T), RS1000838118 (6:89271359 G>A), RS1000860490 (6:89301784 T>C,G)
Disease associations
OMIM: gene MIM:137162 | disease phenotypes: MIM:190300
GenCC curated gene-disease
Mondo (1): essential tremor (MONDO:0003233)
Orphanet (1): NON RARE IN EUROPE: Hereditary essential tremor (Orphanet:862)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009214_2 | Third ventricle volume | 4.000000e-07 |
| GCST011426_22 | Systemic lupus erythematosus | 2.000000e-06 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020329 | Essential Tremor | C10.228.662.350 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2109242 (PROTEIN COMPLEX GROUP), CHEMBL2375 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 165,947 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL96 | GAMMA-AMINOBUTYRIC ACID | 1 | 160,188 |
| CHEMBL273481 | MUSCIMOL | 1 | 5,759 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: lgic — GABAA receptors
ChEMBL bioactivities
5 potent at pChembl≥5 of 11 total, top 5 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.40 | EC50 | 400 | nM | t-4-AMINOCROTONIC ACID (TACA) |
| 6.22 | Kd | 600 | nM | t-4-AMINOCROTONIC ACID (TACA) |
| 5.85 | Kd | 1400 | nM | MUSCIMOL |
| 5.77 | Kd | 1700 | nM | GAMMA-AMINOBUTYRIC ACID |
| 5.52 | EC50 | 3000 | nM | IMIDAZOLE ACETIC ACID |
PubChem BioAssay actives
5 with measured affinity, of 22 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (E)-4-aminobut-2-enoic acid | 71532: Partial agonist activity against homomeric rho-2 subunit GABA-C receptor expressed in Xenopus oocytes | ec50 | 0.4000 | uM |
| 5-(aminomethyl)-1,2-oxazol-3-one | 71414: Partial agonist activity against human rho-2 subunit GABA-C receptor expressed in Xenopus oocytes | kd | 1.4000 | uM |
| .gamma.-aminobutyric acid | 71408: Agonist activity against Gamma-aminobutyric acid type C (GABA-C) receptor derived from bovine retinal RNA expressed in Xenopus oocytes | kd | 1.7000 | uM |
| 2-(1H-imidazol-5-yl)acetic acid | 71534: Partial agonist activity against rho-2 subunit GABA-C receptor expressed in Xenopus oocytes, higher intrinsic activity (Im 38%) | ec50 | 3.0000 | uM |
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aminomethylphosphonic acid (AMPA) | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| licochalcone B | increases expression | 1 |
| Fulvestrant | increases methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, decreases expression | 1 |
| Hydrogen Peroxide | affects cotreatment, increases expression | 1 |
| Lead | decreases expression | 1 |
| Theophylline | affects cotreatment, increases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| 2,4-Dichlorophenoxyacetic Acid | increases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Cadmium Chloride | increases abundance, decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Acrylamide | increases expression | 1 |
| S-Nitrosoglutathione | decreases expression | 1 |
| Particulate Matter | decreases expression | 1 |
ChEMBL screening assays
15 unique, capped per target: 14 functional, 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL679661 | Functional | Agonist activity against Gamma-aminobutyric acid C (GABA-C) receptor derived from bovine retinal RNA expressed in Xenopus oocytes | GABA-Activated ligand gated ion channels: medicinal chemistry and molecular biology. — J Med Chem |
| CHEMBL679664 | Binding | Activation of human rho2 GABA-C receptor at 34% of maximal GABA-induced response | GABA-Activated ligand gated ion channels: medicinal chemistry and molecular biology. — J Med Chem |
Clinical trials (associated diseases)
235 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00439699 | PHASE4 | COMPLETED | A Pilot Clinical Trial Of Memantine for Essential Tremor |
| NCT00584376 | PHASE4 | COMPLETED | Pregabalin (Lyrica) for the Treatment of Essential Tremor |
| NCT00998660 | PHASE4 | COMPLETED | RECHARGE Sub-Study to the Implantable Systems Performance Registry (ISPR) |
| NCT02111369 | PHASE4 | COMPLETED | Propranolol and Botulinum Toxin for Essential Vocal Tremor |
| NCT02495883 | PHASE4 | COMPLETED | Functional Imaging of Tremor Circuits and Mechanisms of Treatment Response |
| NCT00018564 | PHASE3 | COMPLETED | Novel Therapies for Essential Tremor |
| NCT00236496 | PHASE3 | COMPLETED | A Comparison of the Efficacy and Safety of Topiramate Versus Placebo in Treating Tremor of Unknown Cause. |
| NCT01441284 | PHASE3 | WITHDRAWN | Efficacy of Pramipexole Extended Release in the Treatment of Essential Tremor |
| NCT04193527 | PHASE3 | COMPLETED | A Study to Evaluate the Diagnostic Efficacy of DaTSCAN™ Ioflupane (123I) Injection in Single Photon Emission Computed Tomography (SPECT) for the Diagnosis of Parkinsonian Syndrome (PS) in Chinese Patients |
| NCT04265209 | PHASE3 | COMPLETED | [18F] LBT-999 PET Compared to [123I]-FP/CIT SPECT to Distinguish Between Parkinson’s Diseases and Essential Tremor |
| NCT06087276 | PHASE3 | ENROLLING_BY_INVITATION | Essential 3 - Decentralized, Phase 3 Study Evaluating the Safety and Efficacy of Ulixacaltamide in Essential Tremor (ET) |
| NCT00080366 | PHASE2 | COMPLETED | Octanol to Treat Essential Tremor |
| NCT00102596 | PHASE2 | COMPLETED | Clinical Trial Characterizing the Bioavailability of 1-Octanol in Adults With Ethanol-responsive Essential Tremor |
| NCT00223743 | PHASE2 | COMPLETED | A Safety/Efficacy Trial of Zonisamide for Essential Tremor |
| NCT00321087 | PHASE2 | TERMINATED | A Study of T2000 in Essential Tremor |
| NCT00598078 | PHASE2 | COMPLETED | Multiple-dose,Double-blind,Placebo-controlled Study of Sodium Oxybate in Patients With Essential Tremor |
| NCT00655278 | PHASE2 | TERMINATED | T2000 in Essential Tremor - Open Label Continuation |
| NCT01332695 | PHASE2 | COMPLETED | A Pilot Efficacy and Safety Study of ST101 in Essential Tremor |
| NCT02277106 | PHASE2 | COMPLETED | Evaluate SAGE-547 in Participants With Essential Tremor |
| NCT02551848 | PHASE2 | UNKNOWN | Kinematic-based BoNT-A Injections for Bilateral ET |
| NCT02668146 | PHASE2 | UNKNOWN | An Efficacy/Safety Study of Perampanel for Reducing Essential Tremor |
| NCT02978781 | PHASE2 | COMPLETED | A Study to Evaluate SAGE-217 in Participants With Essential Tremor |
| NCT03101241 | PHASE2 | COMPLETED | A Phase 2 RCT Study of CX-8998 for Essential Tremor |
| NCT03688685 | PHASE2 | COMPLETED | A Clinical Study to Evaluate CAD-1883 in Essential Tremor |
| NCT03780426 | PHASE2 | COMPLETED | tSMS in Essential Tremor |
| NCT04305275 | PHASE2 | COMPLETED | A Study to Evaluate the Efficacy, Safety, and Tolerability of SAGE-324 in Participants With Essential Tremor |
| NCT04727658 | PHASE2 | TERMINATED | Linac FRACtionated Radiosurgical THALamotomie in Tremors (FRACTHAL) |
| NCT04880616 | PHASE2 | COMPLETED | Safety, Efficacy, and Tolerability of NBI-827104 for the Treatment of Essential Tremor |
| NCT05021978 | PHASE2 | COMPLETED | A Clinical Trial of PRAX-944 in Participants With Essential Tremor |
| NCT05021991 | PHASE2 | COMPLETED | A Clinical Trial of 2 Doses of PRAX-944 in Participants With Essential Tremor |
| NCT05122650 | PHASE2 | COMPLETED | A Study To Assess the Safety and Efficacy of JZP385 in the Treatment of Adults With Moderate to Severe Essential Tremor (ET) |
| NCT05173012 | PHASE2 | COMPLETED | Study to Evaluate SAGE-324 in Participants With Essential Tremor |
| NCT05387642 | PHASE2 | WITHDRAWN | A Clinical Trial of PRAX-114 in Participants With Essential Tremor |
| NCT06312800 | PHASE2 | WITHDRAWN | Acamprosate and Methazolamide for Essential Tremor |
| NCT06821906 | PHASE2 | RECRUITING | Stereotactic Radiosurgery in the Treatment of Essential Tremor |
| NCT07074002 | PHASE2 | RECRUITING | Proof of Concept Study on BP1.4979 Effect on Essential Tremor |
| NCT07103265 | PHASE2 | NOT_YET_RECRUITING | Developing a New LIFU Neuromodulation Method to Suppress Tremor |
| NCT00001986 | PHASE1 | COMPLETED | 1-Octanol to Treat Essential Tremor |
| NCT00016679 | PHASE1 | COMPLETED | 1-Octanol to Treat Essential Tremor |
| NCT01304758 | PHASE1 | COMPLETED | ExAblate Transcranial MR Guided Focused Ultrasound in the Treatment of Essential Tremor |
Related Atlas pages
- Targeted by drugs: Gaboxadol
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): essential tremor