GALC
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Summary
GALC (galactosylceramidase, HGNC:4115) is a protein-coding gene on chromosome 14q31.3, encoding Galactocerebrosidase (P54803). Hydrolyzes the galactose ester bonds of glycolipids such as galactosylceramide and galactosylsphingosine.
This gene encodes a lysosomal protein which hydrolyzes the galactose ester bonds of galactosylceramide, galactosylsphingosine, lactosylceramide, and monogalactosyldiglyceride. Mutations in this gene have been associated with Krabbe disease, also known as globoid cell leukodystrophy. Alternate transcriptional splice variants, encoding different isoforms, have been characterized.
Source: NCBI Gene 2581 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Krabbe disease (Definitive, ClinGen)
- GWAS associations: 25
- Clinical variants (ClinVar): 1,639 total — 192 pathogenic, 147 likely-pathogenic
- Phenotypes (HPO): 133
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_000153
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4115 |
| Approved symbol | GALC |
| Name | galactosylceramidase |
| Location | 14q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000054983 |
| Ensembl biotype | protein_coding |
| OMIM | 606890 |
| Entrez | 2581 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 8 protein_coding, 5 nonsense_mediated_decay, 3 retained_intron, 3 protein_coding_CDS_not_defined
ENST00000261304, ENST00000393568, ENST00000393569, ENST00000474294, ENST00000477716, ENST00000544807, ENST00000554372, ENST00000554916, ENST00000555000, ENST00000555179, ENST00000555956, ENST00000556261, ENST00000556879, ENST00000557316, ENST00000557520, ENST00000622264, ENST00000872271, ENST00000921945, ENST00000950382
RefSeq mRNA: 10 — MANE Select: NM_000153
NM_000153, NM_001201401, NM_001201402, NM_001424071, NM_001424072, NM_001424073, NM_001424074, NM_001424075, NM_001424076, NM_001424077
CCDS: CCDS55936, CCDS55937, CCDS9878
Canonical transcript exons
ENST00000261304 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001220438 | 87992970 | 87993182 |
| ENSE00002500561 | 87933014 | 87934878 |
| ENSE00003482935 | 87963384 | 87963511 |
| ENSE00003505928 | 87947728 | 87947878 |
| ENSE00003534204 | 87968335 | 87968490 |
| ENSE00003543377 | 87939905 | 87939981 |
| ENSE00003551391 | 87982205 | 87982243 |
| ENSE00003573061 | 87986489 | 87986602 |
| ENSE00003574013 | 87965505 | 87965629 |
| ENSE00003581551 | 87941395 | 87941558 |
| ENSE00003610928 | 87945553 | 87945733 |
| ENSE00003613235 | 87988144 | 87988207 |
| ENSE00003631703 | 87976358 | 87976488 |
| ENSE00003649167 | 87949845 | 87949931 |
| ENSE00003674158 | 87988455 | 87988523 |
| ENSE00003675436 | 87984394 | 87984533 |
| ENSE00003678821 | 87950659 | 87950748 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 98.79.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 34.2667 / max 711.2634, expressed in 1755 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 144392 | 20.2898 | 1743 |
| 144390 | 9.4593 | 1607 |
| 144391 | 2.4544 | 1131 |
| 144388 | 1.0666 | 574 |
| 144389 | 0.5868 | 234 |
| 144387 | 0.4098 | 163 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 98.79 | gold quality |
| bronchial epithelial cell | CL:0002328 | 96.74 | gold quality |
| jejunal mucosa | UBERON:0000399 | 96.45 | gold quality |
| renal glomerulus | UBERON:0000074 | 96.09 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 96.03 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 94.81 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 94.49 | gold quality |
| cranial nerve II | UBERON:0000941 | 94.42 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 94.31 | gold quality |
| duodenum | UBERON:0002114 | 94.21 | gold quality |
| bronchus | UBERON:0002185 | 94.15 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 93.91 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 93.88 | gold quality |
| corpus callosum | UBERON:0002336 | 93.75 | gold quality |
| visceral pleura | UBERON:0002401 | 93.31 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 92.88 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 92.87 | gold quality |
| monocyte | CL:0000576 | 92.28 | gold quality |
| mononuclear cell | CL:0000842 | 92.18 | gold quality |
| leukocyte | CL:0000738 | 91.92 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 91.81 | gold quality |
| metanephros | UBERON:0000081 | 91.75 | gold quality |
| pleura | UBERON:0000977 | 91.65 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 91.51 | gold quality |
| spinal cord | UBERON:0002240 | 91.36 | gold quality |
| endothelial cell | CL:0000115 | 91.35 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 91.29 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 91.21 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 91.18 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 91.13 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 11.60 |
| E-ANND-3 | yes | 11.56 |
| E-MTAB-9067 | yes | 11.44 |
| E-CURD-112 | yes | 10.51 |
| E-MTAB-9801 | yes | 6.47 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1
miRNA regulators (miRDB)
97 targeting GALC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 39)
- A GALC genotype with one deleted and one polymorphic GALC activity-reducing allele can lead to enzymatic and clinical signs of LOGLD in the absence of marked GALC-PS deficiency (PMID:11814461)
- galactocerebrosidase and galactosylcerebroside have roles in cancer cells (PMID:15657896)
- confirm several mutations common to Japanese patients, the two most frequent being 12Del3Ins and I66M+I289V, which account for 37% of all mutant alleles (PMID:16607461)
- Psychosine reduces apoptotic response and causes atypical cytokine production in peripheral immune cells of Krabbe patients. (PMID:17458901)
- molecular analysis in 5 families with late onset Krabbe disease from Catania, Sicily shows that this condition is mainly due to a p.Gly41Ser substitution in the GALC gene that abolishes catalytic activity of the galactocerebrosidase enzyme (PMID:17579360)
- This study analyzes the effects of Asp528Asn, Iso234Thr, and Leu629Arg mutations on GALC intracellular processing, secretion, uptake, and subcellular localization in mammalian cell lines. (PMID:20410102)
- This study, reporting one of the largest genotype-phenotype analyses of the GALC gene so far performed in a European Krabbe disease cohort, revealed that the Italian GALC mutational profile differs significantly from other populations of European origin. (PMID:20886637)
- The p.Gly41Ser mutation was associated with longer survival with Krabbe disease. A wide spectrum of late onset Krabbe leukodystrophy is found despite similar genotype. (PMID:21070211)
- suggest that heterozygous deletions that reduce GALC activity are a novel mechanism increasing risk of POAG (PMID:22073273)
- Higher galactocerebrosidase activity is predictive of later symptom onset times but does not predict survival after symptom onset when controlling for the logarithm of age at onset. (PMID:23044012)
- GALC mutation is associated with Krabbe disease. (PMID:23276707)
- study identified 4 novel mutations of the GALC gene in 2 unrelated Chinese families with Krabbe disease: one insertion mutation, c.1836_1837insT, one nonsense mutation, c.599C>A (p.S200X),one deletion mutation, c.1911 1_1911 5delGTAAG and one missense mutation, c.2041G>A (PMID:23462331)
- Itis an exoglycosidase that catalyzes the hydrolysis of terminal beta-linked galactose residues and its deficiencies or mutation cause llysosomal diseases. (review) (PMID:23649392)
- Structural snapshots illustrate the catalytic cycle of beta-galactocerebrosidase, the defective enzyme in Krabbe disease. (PMID:24297913)
- Genetic variants near IREB2 and GALC likely contribute to genetic susceptibility to PAE associated with COPD. (PMID:25101718)
- We demonstrated that a heterozygous GALC deletion does not play a significant role in the pathogenesis of normal tension glaucoma in a representative clinic-based population of South Koreans, unlike whites. (PMID:25943734)
- GALC was downregulated by promoter hypermethylation and contributed to the pathogenesis of EBV-associated nasopharyngeal carcinoma (PMID:26178533)
- promoter hypermethylation contributed to down-regulation of GALC Gene, implicating epigenetic inactivation of GALC may play a role in tumorigenesis of cancer. (PMID:26617822)
- Mutations in GALC cause late-onset Krabbe disease with predominant cerebellar ataxia (PMID:26915362)
- Enzyme activities (acid alpha-glucosidase (GAA), galactocerebrosidase (GALC), glucocerebrosidase (GBA), alpha-galactosidase A (GLA), alpha-iduronidase (IDUA) and sphingomyeline phosphodiesterase-1 (SMPD-1)) were measured on ~43,000 de-identified dried blood spot (DBS) punches, and screen positive samples were submitted for DNA sequencing to obtain genotype confirmation of disease risk (PMID:27238910)
- Case Report: compound GALC heterozygosity in a boy with infantile Krabbe disease with severe clinical course. (PMID:27442402)
- This review illustrated The Krabbe’s disease is caused by mutation in the enzyme Beta-galactocerebrosidase. (PMID:27638582)
- This is the largest expression study of GALC variants/mutations found in Newborn screening and confirmed KD cases. (PMID:27638593)
- we showed for the first time the specific alteration of beta-Galctosidase (Gal), beta-Galactosylcerebrosidase (GALC) in MCI patients. It is notable that in above peripheral biological samples the lysosomes are more sensitive to AD cellular metabolic alteration when compared to levels of Abeta-peptide or Tau proteins, similar in both AD groups analyzed (PMID:28825628)
- rs17203398 associated with mucous membrane pemphigoid (PMID:29136295)
- The authors present the structure of a glycosphingolipid-processing complex, revealing how SapA and GALC form a heterotetramer with an open channel connecting the enzyme active site to the SapA hydrophobic cavity. (PMID:29323104)
- Results show for the first time that during normal aging, psychosine metabolism is progressively dysfunctional, leading to its accumulation in the aging brain, especially in regions vulnerable to degeneration in Parkinson’s disease (PD). These results underline the possibility that defects in the metabolism mediated by changes in GALC activity modify the risk of developing alpha-synuclein pathology in vulnerable patients. (PMID:29481565)
- EMT phenotypes and GALC expression of CTCs are correlated with cancer metastasis and therapeutic outcomes, suggesting them to be potential markers for the prognosis of NSCLC. (PMID:29758927)
- The present study describes two GALC mutations shared by two Chinese siblings with juvenile-onset of Krabbe disease (PMID:31185936)
- Self-association of beta-galactocerebrosidase (human GALC)decreases as the concentration of sodium chloride increases from 50 to 500 mM. This indicates that ionic interactions are involved in the association. These results indicate that GALC has the highest tendency for oligomerization at physiological ionic strength and pH (lysosomal lumen). (PMID:31869371)
- Molecular dynamics simulations to decipher the structural and functional consequences of pathogenic missense mutations in the galactosylceramidase (GALC) protein causing Krabbe’s disease. (PMID:32186243)
- This study generated information on the recessive allele frequency dynamics of GALC gene across 15 global populations. (PMID:32304783)
- beta-Galactosylceramidase Promotes Melanoma Growth via Modulation of Ceramide Metabolism. (PMID:32998995)
- Brainstem development requires galactosylceramidase and is critical for pathogenesis in a model of Krabbe disease. (PMID:33097716)
- Two Cases of Female Chinese Adult-Onset Krabbe Disease with One Novel Mutation and a Review of Literature. (PMID:33190188)
- beta-Galactosidase is a target enzyme for detecting peritoneal metastasis of gastric cancer. (PMID:34021168)
- Galactosylceramidase deficiency and pathological abnormalities in cerebral white matter of Krabbe disease. (PMID:36113749)
- GALC variants affect galactosylceramidase enzymatic activity and risk of Parkinson’s disease. (PMID:36370000)
- A novel mutation in the GALC gene causes Krabbe disease accompanied with extensive Mongolian spots in a consanguineous family. (PMID:36920572)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | galcb | ENSDARG00000016474 |
| danio_rerio | galca | ENSDARG00000037064 |
| mus_musculus | Galc | ENSMUSG00000021003 |
| rattus_norvegicus | Galc | ENSRNOG00000003759 |
| caenorhabditis_elegans | WBGENE00016207 |
Protein
Protein identifiers
Galactocerebrosidase — P54803 (reviewed: P54803)
Alternative names: Galactocerebroside beta-galactosidase, Galactosylceramidase, Galactosylceramide beta-galactosidase
All UniProt accessions (8): A0A087WX10, A0A0A0MQV0, P54803, G3V255, G3V4M2, G3V5E8, H0YJG8, H0YJV6
UniProt curated annotations — full annotation on UniProt →
Function. Hydrolyzes the galactose ester bonds of glycolipids such as galactosylceramide and galactosylsphingosine. Enzyme with very low activity responsible for the lysosomal catabolism of galactosylceramide, a major lipid in myelin, kidney and epithelial cells of small intestine and colon.
Subcellular location. Lysosome.
Tissue specificity. Detected in urine. Detected in testis, brain and placenta (at protein level). Detected in kidney and liver.
Disease relevance. Krabbe disease (KRB) [MIM:245200] An autosomal recessive disorder characterized by insufficient catabolism of several galactolipids that are important for normal myelin production. Four clinical forms are recognized. The infantile form accounts for 90% of cases. It manifests before six months of age with irritability, spasticity, arrest of motor and mental development, and bouts of temperature elevation without infection. This is followed by myoclonic jerks of arms and legs, oposthotonus, hypertonic fits, and mental regression, which progresses to a severe decerebrate condition with no voluntary movements and death from respiratory infections or cerebral hyperpyrexia before 2 years of age. Cases with later onset present with unexplained blindness, weakness and sensorimotor peripheral neuropathy, mental deterioration and death. The disease is caused by variants affecting the gene represented in this entry.
Polymorphism. Polymorphic amino-acid changes are responsible for the wide range of catalytic activities found in the general population.
Similarity. Belongs to the glycosyl hydrolase 59 family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P54803-1 | 1 | yes |
| P54803-3 | 3 | |
| P54803-4 | 4 | |
| P54803-5 | 5 |
RefSeq proteins (10): NP_000144, NP_001188330, NP_001188331, NP_001411000, NP_001411001, NP_001411002, NP_001411003, NP_001411004, NP_001411005, NP_001411006 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001286 | Glyco_hydro_59 | Family |
| IPR013785 | Aldolase_TIM | Homologous_superfamily |
| IPR017853 | GH_hydrolase_sf | Homologous_superfamily |
| IPR035394 | Glyco_hydro_59_dom | Domain |
| IPR049161 | GH59_cat | Domain |
| IPR049162 | GH59_C | Domain |
Pfam: PF02057, PF17387, PF21708
Enzyme classification (BRENDA):
- EC 3.2.1.46 — galactosylceramidase (BRENDA: 5 organisms, 18 substrates, 19 inhibitors, 14 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 6-HEXADECANOYLAMINO-4-METHYLBELLIFERYL-BETA-D-GA | 0.017–0.15 | 5 |
| GALACTOSYLCERAMIDE | 0.02–0.2 | 4 |
| GALACTOCEREBROSIDE | 0.005–0.025 | 2 |
| GALACTOSYLSPHINGOSINE | 0.11–0.67 | 2 |
| 4-METHYLUMBELLIFERYL-BETA-D-GALACTOPYRANOSIDE | 0.47 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- a beta-D-galactosyl-(1<->1’)-N-acylsphing-4-enine + H2O = an N-acylsphing-4-enine + D-galactose (RHEA:14297)
- a D-galactosylceramide + H2O = an N-acyl-sphingoid base + D-galactose (RHEA:43412)
- beta-D-galactosyl-(1<->1)-sphing-4-enine + H2O = sphing-4-enine + D-galactose (RHEA:43908)
UniProt features (74 total): sequence variant 51, glycosylation site 6, splice variant 4, binding site 4, sequence conflict 4, active site 2, signal peptide 1, chain 1, disulfide bond 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P54803-F1 | 94.56 | 0.92 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 198 (proton donor/acceptor); 274 (nucleophile)
Ligand- & substrate-binding residues (4): 109; 151; 197; 396
Disulfide bonds (1): 287–394
Glycosylation sites (6): 403, 556, 559, 602, 143, 379
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9840310 | Glycosphingolipid catabolism |
MSigDB gene sets: 490 (showing top):
VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_CERAMIDE_CATABOLIC_PROCESS, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, MCBRYAN_PUBERTAL_TGFB1_TARGETS_UP, KEGG_LYSOSOME, GOBP_MEMBRANE_LIPID_CATABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, SHEPARD_BMYB_MORPHOLINO_DN, MAHAJAN_RESPONSE_TO_IL1A_DN, GOBP_GLYCOLIPID_CATABOLIC_PROCESS, GOBP_SPHINGOLIPID_METABOLIC_PROCESS, KOYAMA_SEMA3B_TARGETS_UP, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4
GO Biological Process (6): galactosylceramide catabolic process (GO:0006683), myelination (GO:0042552), glycosphingolipid catabolic process (GO:0046479), lipid metabolic process (GO:0006629), sphingolipid metabolic process (GO:0006665), lipid catabolic process (GO:0016042)
GO Molecular Function (3): galactosylceramidase activity (GO:0004336), hydrolase activity (GO:0016787), hydrolase activity, acting on glycosyl bonds (GO:0016798)
GO Cellular Component (3): lysosome (GO:0005764), membrane (GO:0016020), lysosomal lumen (GO:0043202)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Glycosphingolipid metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| lipid metabolic process | 2 |
| galactosylceramide metabolic process | 1 |
| galactolipid catabolic process | 1 |
| glycosylceramide catabolic process | 1 |
| axon ensheathment | 1 |
| glycosphingolipid metabolic process | 1 |
| glycolipid catabolic process | 1 |
| sphingolipid catabolic process | 1 |
| primary metabolic process | 1 |
| catabolic process | 1 |
| glycosylceramidase activity | 1 |
| catalytic activity | 1 |
| hydrolase activity | 1 |
| lytic vacuole | 1 |
| cellular anatomical structure | 1 |
| lysosome | 1 |
| vacuolar lumen | 1 |
Protein interactions and networks
STRING
1066 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GALC | ARSA | P15289 | 859 |
| GALC | PSAP | P07292 | 851 |
| GALC | ASAH1 | Q13510 | 835 |
| GALC | GLB1 | P16278 | 821 |
| GALC | MBP | P02686 | 814 |
| GALC | GBA1 | P04062 | 796 |
| GALC | GLA | P06280 | 771 |
| GALC | CNP | P09543 | 758 |
| GALC | SMPD1 | P17405 | 729 |
| GALC | GFAP | P14136 | 702 |
| GALC | UGT8 | Q16880 | 694 |
| GALC | OLIG2 | Q13516 | 650 |
| GALC | NES | P48681 | 621 |
| GALC | OLIG1 | Q8TAK6 | 615 |
| GALC | PDGFRA | P16234 | 613 |
IntAct
35 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ESS2 | ACADS | psi-mi:“MI:0914”(association) | 0.640 |
| CLEC11A | VWA8 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM51 | WWP2 | psi-mi:“MI:0914”(association) | 0.530 |
| IER2 | KPNA3 | psi-mi:“MI:0914”(association) | 0.530 |
| EEF2KMT | BCAT2 | psi-mi:“MI:0914”(association) | 0.530 |
| CST7 | CTSL | psi-mi:“MI:0914”(association) | 0.530 |
| ESS2 | HSPA8 | psi-mi:“MI:0914”(association) | 0.530 |
| GTF2H2C | ERCC3 | psi-mi:“MI:0914”(association) | 0.530 |
| NEDD1 | CEP290 | psi-mi:“MI:0914”(association) | 0.480 |
| GALC | H1-2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NCOA5 | GALC | psi-mi:“MI:0915”(physical association) | 0.400 |
| ECI2 | ARID1A | psi-mi:“MI:0914”(association) | 0.350 |
| ECH1 | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| ECI2 | PDLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| ECH1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| APBB1 | SSPOP | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-C | psi-mi:“MI:0914”(association) | 0.350 | |
| OS9 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PNMA2 | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| IGF2R | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| CNKSR1 | TRIM24 | psi-mi:“MI:0914”(association) | 0.350 |
| TRMT11 | NARS1 | psi-mi:“MI:0914”(association) | 0.350 |
| IKZF1 | MTA2 | psi-mi:“MI:0914”(association) | 0.350 |
| DNAJC17 | SYF2 | psi-mi:“MI:0914”(association) | 0.350 |
| GALC | HSPA5 | psi-mi:“MI:0914”(association) | 0.350 |
| CABP2 | PPM1A | psi-mi:“MI:0914”(association) | 0.350 |
| OTUD6B | GALC | psi-mi:“MI:0914”(association) | 0.350 |
| ESS2 | CDC40 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (53): GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS), GALC (Affinity Capture-MS)
ESM2 similar proteins: A1D0A3, A1D1Z9, A1D8Y6, A1DJ58, A2QEQ6, B0XMP7, B0XXE7, B0Y224, B5X3C1, B8N6V7, B8QGZ3, D4B5H9, H2DF88, O02791, P29000, P29853, P45582, P48980, P48981, P54803, P54804, P54818, P80065, P93761, Q0C8J3, Q0CUG5, Q0VA39, Q10NX8, Q2UCU3, Q39041, Q43348, Q43857, Q498K0, Q4R1C4, Q4WE86, Q4WG05, Q4WS33, Q5AVP1, Q5AZ53, Q5B7X2
Diamond homologs: B5X3C1, O02791, P54803, P54804, P54818, Q0VA39, Q498K0, Q5SNX7, Q95QT2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1639 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 192 |
| Likely pathogenic | 147 |
| Uncertain significance | 425 |
| Likely benign | 561 |
| Benign | 114 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1066093 | NM_000153.4(GALC):c.1987del (p.Trp663fs) | Pathogenic |
| 1070140 | NC_000014.8:g.(?_88391504)_88423173del | Pathogenic |
| 1070141 | NC_000014.8:g.(?_88391504)_88423174del | Pathogenic |
| 1070539 | NM_000153.4(GALC):c.181_182insAG (p.Val61fs) | Pathogenic |
| 1070766 | NM_000153.4(GALC):c.302_308dup (p.Gly104fs) | Pathogenic |
| 1070767 | NM_000153.4(GALC):c.176del (p.Gly59fs) | Pathogenic |
| 1071897 | NM_000153.4(GALC):c.1884del (p.Lys628fs) | Pathogenic |
| 1071955 | NM_000153.4(GALC):c.1762_1763del (p.Leu588fs) | Pathogenic |
| 1072645 | NM_000153.4(GALC):c.37C>T (p.Arg13Ter) | Pathogenic |
| 1073890 | NM_000153.4(GALC):c.498del (p.Asn167fs) | Pathogenic |
| 1073951 | NC_000014.8:g.(?_88391503)_88423172del | Pathogenic |
| 1074198 | NM_000153.4(GALC):c.1411_1432del (p.Thr471fs) | Pathogenic |
| 1074616 | NM_000153.4(GALC):c.332del (p.Gly111fs) | Pathogenic |
| 1298354 | NM_000153.4(GALC):c.1964del (p.Pro655fs) | Pathogenic |
| 1299228 | NM_000153.4(GALC):c.1821dup (p.Thr608fs) | Pathogenic |
| 1299585 | NM_000153.4(GALC):c.396G>A (p.Trp132Ter) | Pathogenic |
| 1320177 | NM_000153.4(GALC):c.688_694del (p.Trp230fs) | Pathogenic |
| 1322975 | NM_000153.4(GALC):c.1531del (p.Thr511fs) | Pathogenic |
| 1322976 | NM_000153.4(GALC):c.1736_1739del (p.Ala579fs) | Pathogenic |
| 1331457 | NM_000153.4(GALC):c.683_694delinsCTC (p.Asn228_Ser232delinsThrPro) | Pathogenic |
| 1364954 | NM_000153.4(GALC):c.1815dup (p.Arg606fs) | Pathogenic |
| 1378825 | NM_000153.4(GALC):c.1648dup (p.Ser550fs) | Pathogenic |
| 1385679 | NM_000153.4(GALC):c.782_783dup (p.Asp262fs) | Pathogenic |
| 1402125 | NM_000153.4(GALC):c.505C>T (p.Gln169Ter) | Pathogenic |
| 1413114 | NM_000153.4(GALC):c.1291G>T (p.Gly431Ter) | Pathogenic |
| 1414629 | NM_000153.4(GALC):c.27del (p.Trp10fs) | Pathogenic |
| 1424701 | NM_000153.4(GALC):c.29G>A (p.Trp10Ter) | Pathogenic |
| 1425129 | NM_000153.4(GALC):c.1270C>T (p.Gln424Ter) | Pathogenic |
| 1432015 | NM_000153.4(GALC):c.1367_1368del (p.Leu456fs) | Pathogenic |
| 1451476 | NM_000153.4(GALC):c.283_284del (p.Leu95fs) | Pathogenic |
SpliceAI
2455 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:87934745:T:TA | donor_gain | 1.0000 |
| 14:87945668:T:C | acceptor_gain | 1.0000 |
| 14:87945668:T:TC | acceptor_gain | 1.0000 |
| 14:87947723:CTCA:C | donor_loss | 1.0000 |
| 14:87947726:A:AC | donor_gain | 1.0000 |
| 14:87947726:AC:A | donor_gain | 1.0000 |
| 14:87947727:C:CA | donor_gain | 1.0000 |
| 14:87947727:CC:C | donor_gain | 1.0000 |
| 14:87947727:CCA:C | donor_gain | 1.0000 |
| 14:87947727:CCAA:C | donor_gain | 1.0000 |
| 14:87947874:AGGAG:A | acceptor_gain | 1.0000 |
| 14:87947875:GGAG:G | acceptor_gain | 1.0000 |
| 14:87947876:GAG:G | acceptor_gain | 1.0000 |
| 14:87947876:GAGCT:G | acceptor_gain | 1.0000 |
| 14:87947877:AG:A | acceptor_gain | 1.0000 |
| 14:87947877:AGC:A | acceptor_gain | 1.0000 |
| 14:87947878:GC:G | acceptor_gain | 1.0000 |
| 14:87947879:C:CA | acceptor_loss | 1.0000 |
| 14:87947879:C:CC | acceptor_gain | 1.0000 |
| 14:87947879:CT:C | acceptor_gain | 1.0000 |
| 14:87949928:CACT:C | acceptor_gain | 1.0000 |
| 14:87949930:CTCTG:C | acceptor_loss | 1.0000 |
| 14:87949931:TC:T | acceptor_loss | 1.0000 |
| 14:87949932:C:CC | acceptor_gain | 1.0000 |
| 14:87949933:T:A | acceptor_loss | 1.0000 |
| 14:87950657:A:AC | donor_gain | 1.0000 |
| 14:87950658:C:CC | donor_gain | 1.0000 |
| 14:87950747:CT:C | acceptor_gain | 1.0000 |
| 14:87963508:TGAG:T | acceptor_gain | 1.0000 |
| 14:87963512:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
4492 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:87965619:A:G | W307R | 0.997 |
| 14:87965619:A:T | W307R | 0.997 |
| 14:87945573:A:C | S550R | 0.996 |
| 14:87945573:A:T | S550R | 0.996 |
| 14:87945575:T:G | S550R | 0.996 |
| 14:87945631:C:G | R531P | 0.996 |
| 14:87992979:G:C | S62R | 0.996 |
| 14:87992979:G:T | S62R | 0.996 |
| 14:87992981:T:G | S62R | 0.996 |
| 14:87965602:A:C | S312R | 0.995 |
| 14:87965602:A:T | S312R | 0.995 |
| 14:87965604:T:G | S312R | 0.995 |
| 14:87984444:A:G | W178R | 0.995 |
| 14:87984444:A:T | W178R | 0.995 |
| 14:87968374:C:G | R290P | 0.994 |
| 14:87934797:C:G | A665P | 0.993 |
| 14:87982233:T:A | E198V | 0.993 |
| 14:87982235:A:C | N197K | 0.993 |
| 14:87982235:A:T | N197K | 0.993 |
| 14:87984525:A:G | W151R | 0.993 |
| 14:87984525:A:T | W151R | 0.993 |
| 14:87941494:C:G | A579P | 0.992 |
| 14:87945634:A:G | L530P | 0.991 |
| 14:87963427:A:G | L373P | 0.991 |
| 14:87968432:A:G | W271R | 0.991 |
| 14:87968432:A:T | W271R | 0.991 |
| 14:87984510:A:G | W156R | 0.991 |
| 14:87984510:A:T | W156R | 0.991 |
| 14:87986540:A:G | W131R | 0.991 |
| 14:87986540:A:T | W131R | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000118702 (14:87972797 G>A), RS1000206216 (14:87954044 C>G,T), RS1000236059 (14:87970221 T>A,C), RS1000267264 (14:87969969 G>A), RS1000294367 (14:87949557 A>G), RS1000380667 (14:87960269 G>A), RS1000404443 (14:87957062 C>T), RS1000410233 (14:87986401 G>A), RS1000577837 (14:87982885 C>T), RS1000597596 (14:87977152 A>G), RS1000671098 (14:87948860 A>C), RS1000687893 (14:87988863 A>G), RS1000734560 (14:87955699 T>C), RS1000753136 (14:87960415 T>C), RS1000755207 (14:87942735 G>A)
Disease associations
OMIM: gene MIM:606890 | disease phenotypes: MIM:245200, MIM:108600, MIM:312080, MIM:301500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Krabbe disease | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Krabbe disease | Definitive | AR |
Mondo (12): Krabbe disease (MONDO:0009499), spastic ataxia (MONDO:0017845), congenital nervous system disorder (MONDO:0002320), epilepsy syndrome (MONDO:0015650), intellectual disability (MONDO:0001071), movement disorder (MONDO:0005395), amblyopia (MONDO:0001020), strabismus (MONDO:0003432), pathologic nystagmus (MONDO:0004843), fetal growth restriction (MONDO:0005030), leukodystrophy (MONDO:0019046), Fabry disease (MONDO:0010526)
Orphanet (6): Krabbe disease (Orphanet:487), Spastic ataxia (Orphanet:316226), Epilepsy syndrome (Orphanet:166463), Leukodystrophy (Orphanet:68356), Fabry disease (Orphanet:324), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
133 total (30 of 133 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000020 | Urinary incontinence |
| HP:0000238 | Hydrocephalus |
| HP:0000365 | Hearing impairment |
| HP:0000467 | Neck muscle weakness |
| HP:0000505 | Visual impairment |
| HP:0000565 | Esotropia |
| HP:0000572 | Visual loss |
| HP:0000613 | Photophobia |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0000708 | Atypical behavior |
| HP:0000712 | Emotional lability |
| HP:0000726 | Dementia |
| HP:0000737 | Irritability |
| HP:0000762 | Decreased nerve conduction velocity |
| HP:0001053 | Hypopigmented skin patches |
| HP:0001188 | Hand clenching |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001260 | Dysarthria |
| HP:0001263 | Global developmental delay |
| HP:0001264 | Spastic diplegia |
| HP:0001265 | Hyporeflexia |
| HP:0001268 | Mental deterioration |
| HP:0001270 | Motor delay |
GWAS associations
25 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000879_38 | Crohn’s disease | 4.000000e-18 |
| GCST001648_1 | Breast cancer | 4.000000e-06 |
| GCST001725_48 | Inflammatory bowel disease | 2.000000e-14 |
| GCST001995_7 | Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel) | 2.000000e-06 |
| GCST002797_2 | Pulmonary artery enlargement in chronic obstructive pulmonary disease | 4.000000e-08 |
| GCST002929_17 | Chromium levels | 2.000000e-06 |
| GCST003181_6 | Staphylococcus aureus nasal carriage (intermittent) | 9.000000e-07 |
| GCST003487_14 | Response to fenofibrate (total cholesterol levels) | 3.000000e-06 |
| GCST004131_90 | Inflammatory bowel disease | 3.000000e-11 |
| GCST004132_113 | Crohn’s disease | 5.000000e-12 |
| GCST004735_28 | Epstein-Barr virus copy number in lymphoblastoid cell lines | 1.000000e-06 |
| GCST004902_53 | Parkinson’s disease | 9.000000e-11 |
| GCST005531_60 | Multiple sclerosis | 2.000000e-20 |
| GCST005752_63 | Systemic lupus erythematosus | 5.000000e-10 |
| GCST005944_3 | Viral capsid antigen IgG seropositivity | 7.000000e-10 |
| GCST009325_18 | Parkinson’s disease or first degree relation to individual with Parkinson’s disease | 6.000000e-11 |
| GCST009391_1491 | Metabolite levels | 4.000000e-07 |
| GCST009391_1895 | Metabolite levels | 3.000000e-06 |
| GCST009391_1954 | Metabolite levels | 8.000000e-06 |
| GCST009391_224 | Metabolite levels | 3.000000e-06 |
| GCST009597_29 | Multiple sclerosis | 3.000000e-07 |
| GCST010988_542 | Adult body size | 6.000000e-09 |
| GCST012006_6 | Intralaminar thalamic nuclei volume | 1.000000e-09 |
| GCST90002379_65 | Basophil count | 6.000000e-15 |
| GCST90002380_28 | Basophil percentage of white cells | 8.000000e-17 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006347 | pulmonary artery enlargement |
| EFO:0007758 | intermittent Staphylococcus aureus carrier status |
| EFO:0007806 | total cholesterol change measurement |
| EFO:0009272 | Epstein Barr viral capsid antigen seropositivity |
| EFO:0010416 | triacylglycerol 52:4 measurement |
| EFO:0010414 | triacylglycerol 52:2 measurement |
| EFO:0010423 | triacylglycerol 54:5 measurement |
| EFO:0010491 | glycocholate measurement |
| EFO:0006935 | thalamus volume |
| EFO:0005090 | basophil count |
| EFO:0007992 | basophil percentage of leukocytes |
MeSH disease descriptors (9)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000550 | Amblyopia | C10.228.140.055; C10.597.751.941.073; C11.966.073; C23.888.592.763.941.073 |
| D000795 | Fabry Disease | C10.228.140.163.100.435.825.200; C10.228.140.300.275.374; C14.907.253.329.374; C16.320.322.124; C16.320.565.189.435.825.200; C16.320.565.398.641.803.300; C16.320.565.595.554.825.200; C18.452.132.100.435.825.200; C18.452.584.563.641.803.300; C18.452.648.189.435.825.200; C18.452.648.398.641.803.300; C18.452.648.595.554.825.200 |
| D005317 | Fetal Growth Retardation | C12.050.703.277.370; C16.300.390; C23.550.393.450 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D007965 | Leukodystrophy, Globoid Cell | C10.228.140.163.100.362.500; C10.228.140.163.100.435.825.590; C10.228.140.695.625.500; C10.314.400.500; C16.320.565.189.362.500; C16.320.565.189.435.825.590; C16.320.565.398.641.803.585; C16.320.565.595.554.825.590; C18.452.132.100.362.500; C18.452.132.100.435.825.590; C18.452.584.563.641.803.585; C18.452.648.189.362.500; C18.452.648.189.435.825.590; C18.452.648.398.641.803.585; C18.452.648.595.554.825.590 |
| D009069 | Movement Disorders | C10.228.662 |
| D009759 | Nystagmus, Pathologic | C10.292.562.675; C11.590.400 |
| D013285 | Strabismus | C10.292.562.887; C11.590.810 |
| C564815 | Spastic Ataxia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3713095 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.50 | Kd | 3179 | nM | CHEMBL3752910 |
| 5.50 | ED50 | 3179 | nM | CHEMBL3752910 |
| 5.06 | Kd | 8725 | nM | CHEMBL5653589 |
| 5.06 | ED50 | 8725 | nM | CHEMBL5653589 |
PubChem BioAssay actives
2 with measured affinity, of 7 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148411: Binding affinity to human GALC incubated for 45 mins by Kinobead based pull down assay | kd | 3.1788 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148411: Binding affinity to human GALC incubated for 45 mins by Kinobead based pull down assay | kd | 8.7254 | uM |
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 7 |
| sodium arsenite | affects methylation, decreases expression | 4 |
| (+)-JQ1 compound | affects expression, decreases expression | 3 |
| entinostat | decreases expression, affects cotreatment | 2 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases methylation | 1 |
| arsenite | affects binding, increases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| bisphenol S | decreases methylation | 1 |
| Arbutin | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cannabidiol | decreases expression | 1 |
| Cyclophosphamide | affects response to substance | 1 |
| Estradiol | decreases expression | 1 |
| Fenfluramine | increases expression | 1 |
| Rotenone | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Acrylamide | decreases expression | 1 |
ChEMBL screening assays
3 unique, capped per target: 2 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3562110 | Functional | PubChem BioAssay. A Novel Cell-Based Assay to Identify Small Molecules for B -Galactocerebrosidase. (Class of assay: confirmatory) | PubChem BioAssay data set |
| CHEMBL4258350 | Binding | Inhibition of recombinant human GALC at pH 5.2 pre-incubated for 10 mins followed by 4-methylumbelliferyl-beta-D-galactopyranoside substrate addition and measured after 20 mins by fluorescence assay | Orthoester functionalized N-guanidino derivatives of 1,5-dideoxy-1,5-imino-d-xylitol as pH-responsive inhibitors of β-glucocerebrosidase. — Medchemcomm |
Cellosaurus cell lines
13 cell lines: 5 finite cell line, 4 induced pluripotent stem cell, 3 transformed cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_2Z50 | GM04372 | Finite cell line | Male |
| CVCL_2Z51 | GM04517 | Finite cell line | Male |
| CVCL_2Z54 | GM06805 | Transformed cell line | Female |
| CVCL_2Z55 | GM06806 | Finite cell line | Female |
| CVCL_2Z56 | GM06807 | Transformed cell line | Male |
| CVCL_2Z57 | GM06808 | Finite cell line | Female |
| CVCL_2Z58 | GM06809 | Transformed cell line | Female |
| CVCL_2Z59 | GM06810 | Finite cell line | Male |
| CVCL_A9YV | PUMCi001-A | Induced pluripotent stem cell | Male |
| CVCL_A9YW | PUMCi002-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
223 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT04639310 | PHASE3 | TERMINATED | XEN496 (Ezogabine) in Children With KCNQ2 Developmental and Epileptic Encephalopathy |
| NCT04912856 | PHASE3 | TERMINATED | An Open-Label Extension of the Study XEN496 (Ezogabine) in Children With KCNQ2-DEE |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00383448 | PHASE2 | COMPLETED | HSCT for High Risk Inherited Inborn Errors |
| NCT00668564 | PHASE2 | TERMINATED | Hematopoietic Stem Cell Transplantation (HCT) for Inborn Errors of Metabolism |
| NCT01043640 | PHASE2 | COMPLETED | Allogeneic Bone Marrow Transplant for Inherited Metabolic Disorders |
| NCT02171104 | PHASE2 | ACTIVE_NOT_RECRUITING | MT2013-31: Allo HCT for Metabolic Disorders and Severe Osteopetrosis |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00176904 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Inborn Errors of Metabolism |
| NCT01372228 | PHASE1/PHASE2 | TERMINATED | Phase I/II Pilot Study of Mixed Chimerism to Treat Inherited Metabolic Disorders |
| NCT04693598 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Gene Transfer Clinical Trial for Krabbe Disease |
| NCT05739643 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Gene Transfer Clinical Trial for Infantile and Late Infantile Krabbe Disease Treated Previously With HSCT |
| NCT00005900 | Not specified | UNKNOWN | Study of Pulmonary Complications in Pediatric Patients With Storage Disorders Undergoing Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT00787865 | Not specified | ACTIVE_NOT_RECRUITING | Diffusion Tensor Imaging (DTI) in Infants With Krabbe Disease |
| NCT01425489 | Not specified | WITHDRAWN | Biomarker for Krabbe Disease (BioKrabbe) |
| NCT01938014 | Not specified | COMPLETED | Lysosomal Storage Disease: Health, Development, and Functional Outcome Surveillance in Preschool Children |
| NCT02699190 | Not specified | COMPLETED | LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies |
| NCT02993796 | Not specified | RECRUITING | Krabbe Disease Global Patient Registry |
| NCT03047369 | Not specified | RECRUITING | The Myelin Disorders Biorepository Project |
| NCT03333200 | Not specified | RECRUITING | Longitudinal Study of Neurodegenerative Disorders |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT06308718 | Not specified | TERMINATED | Long-term Follow-up Study to Evaluate Safety and Efficacy of FBX-101 in Krabbe Patients |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT04297891 | Not specified | UNKNOWN | Phenotypes, Biomarkers and Pathophysiology in Spastic Ataxias |
| NCT04048213 | Not specified | UNKNOWN | The Becoming of Children With Doose Syndrome |
| NCT05097742 | Not specified | COMPLETED | Cognitive Impairments in Children With Epilepsy |
| NCT06222840 | Not specified | COMPLETED | Electro-clinical Features and Functional Connectivity Analysis in SYN1 Gene Mutation-related Epilepsy |
| NCT06223334 | Not specified | UNKNOWN | Epileptic Syndromes in Infants and Early Childhood |
Related Atlas pages
- Associated diseases: Krabbe disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amblyopia, congenital nervous system disorder, epilepsy syndrome, Epstein-Barr virus infection, Fabry disease, fetal growth restriction, Krabbe disease, leukodystrophy, movement disorder, pathologic nystagmus, spastic ataxia, strabismus