GALNT9-AS1

Summary

GALNT9-AS1 (GALNT9 antisense RNA 1, HGNC:56353) is a long non-coding RNA gene on chromosome 12q24.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56353
Approved symbol	GALNT9-AS1
Name	GALNT9 antisense RNA 1
Location	12q24.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256943
Ensembl biotype	lncRNA
Entrez	100130238
RNAcentral	URS000075F009 — lncRNA, 3895 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000376617, ENST00000543317, ENST00000715204, ENST00000829595

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000376617 — 3 exons

Exon	Start	End
ENSE00002305863	132275444	132275836
ENSE00002481421	132277257	132278329
ENSE00002483211	132276231	132276530

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 92.25.

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right hemisphere of cerebellum	UBERON:0014890	92.25	gold quality
cerebellar hemisphere	UBERON:0002245	91.87	gold quality
cerebellar cortex	UBERON:0002129	91.82	gold quality
cerebellum	UBERON:0002037	91.78	gold quality
spleen	UBERON:0002106	71.52	gold quality
prefrontal cortex	UBERON:0000451	66.23	gold quality
left lobe of thyroid gland	UBERON:0001120	65.08	gold quality
right lobe of thyroid gland	UBERON:0001119	64.70	gold quality
thyroid gland	UBERON:0002046	64.55	gold quality
frontal cortex	UBERON:0001870	64.42	gold quality
brain	UBERON:0000955	63.16	gold quality
right frontal lobe	UBERON:0002810	62.36	gold quality
ganglionic eminence	UBERON:0004023	61.43	gold quality
superior frontal gyrus	UBERON:0002661	61.37	gold quality
cerebral cortex	UBERON:0000956	60.88	gold quality
metanephros cortex	UBERON:0010533	60.56	gold quality
cortex of kidney	UBERON:0001225	60.40	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.07	gold quality
primary visual cortex	UBERON:0002436	59.66	gold quality
Brodmann (1909) area 9	UBERON:0013540	58.93	gold quality
kidney	UBERON:0002113	58.80	gold quality
anterior cingulate cortex	UBERON:0009835	57.97	gold quality
multicellular organism	UBERON:0000468	57.17	gold quality
adult mammalian kidney	UBERON:0000082	57.03	gold quality
Ammon’s horn	UBERON:0001954	54.78	gold quality
islet of Langerhans	UBERON:0000006	52.16	gold quality
myometrium	UBERON:0001296	51.54	gold quality
duodenum	UBERON:0002114	51.03	gold quality
lymph node	UBERON:0000029	50.57	silver quality
placenta	UBERON:0001987	50.18	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.