GAR1-DT

Summary

GAR1-DT (GAR1 divergent transcript, HGNC:55191) is a long non-coding RNA gene on chromosome 4q25.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55191
Approved symbol	GAR1-DT
Name	GAR1 divergent transcript
Location	4q25
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272795
Ensembl biotype	lncRNA
Entrez	124900758
RNAcentral	URS00026A1CA0 — lncRNA, 1234 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000609440, ENST00000715265, ENST00000715266, ENST00000715267, ENST00000792247, ENST00000792248, ENST00000792249, ENST00000792250, ENST00000792251, ENST00000792252, ENST00000792253, ENST00000792254, ENST00000792255

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609440 — 2 exons

Exon	Start	End
ENSE00004174097	109814831	109815511
ENSE00004174099	109812916	109813600

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 86.16.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3549 / max 15.0808, expressed in 180 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
53610	0.3549	180

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.16	gold quality
cortical plate	UBERON:0005343	72.03	gold quality
ganglionic eminence	UBERON:0004023	71.38	gold quality
colonic epithelium	UBERON:0000397	71.32	gold quality
bone marrow cell	CL:0002092	71.00	gold quality
stromal cell of endometrium	CL:0002255	70.52	gold quality
left testis	UBERON:0004533	70.35	gold quality
right testis	UBERON:0004534	70.10	gold quality
testis	UBERON:0000473	69.72	gold quality
bone marrow	UBERON:0002371	69.49	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	67.26	gold quality
right uterine tube	UBERON:0001302	67.23	gold quality
substantia nigra	UBERON:0002038	66.59	gold quality
skeletal muscle tissue	UBERON:0001134	66.19	gold quality
hypothalamus	UBERON:0001898	66.07	gold quality
nucleus accumbens	UBERON:0001882	65.95	gold quality
amygdala	UBERON:0001876	65.39	gold quality
putamen	UBERON:0001874	64.98	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.42	gold quality
primary visual cortex	UBERON:0002436	64.40	gold quality
caudate nucleus	UBERON:0001873	64.20	gold quality
prefrontal cortex	UBERON:0000451	64.14	gold quality
right frontal lobe	UBERON:0002810	63.98	gold quality
brain	UBERON:0000955	63.96	gold quality
frontal cortex	UBERON:0001870	63.82	gold quality
Ammon’s horn	UBERON:0001954	63.78	gold quality
pituitary gland	UBERON:0000007	63.77	gold quality
cerebral cortex	UBERON:0000956	63.74	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	63.74	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	63.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.