GATA1
gene geneOn this page
Also known as ERYF1NFE1GATA-1NF-E1
Summary
GATA1 (GATA binding protein 1, HGNC:4170) is a protein-coding gene on chromosome Xp11.23, encoding Erythroid transcription factor (P15976). Transcriptional activator or repressor which serves as a general switch factor for erythroid development.
This gene encodes a protein which belongs to the GATA family of transcription factors. The protein plays an important role in erythroid development by regulating the switch of fetal hemoglobin to adult hemoglobin. Mutations in this gene have been associated with X-linked dyserythropoietic anemia and thrombocytopenia.
Source: NCBI Gene 2623 — RefSeq curated summary.
At a glance
- Gene–disease (curated): GATA1-Related X-Linked Cytopenia (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 432 total — 59 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 140
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- Transcription factor: yes — 163 downstream targets (CollecTRI)
- MANE Select transcript:
NM_002049
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4170 |
| Approved symbol | GATA1 |
| Name | GATA binding protein 1 |
| Location | Xp11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ERYF1, NFE1, GATA-1, NF-E1 |
| Ensembl gene | ENSG00000102145 |
| Ensembl biotype | protein_coding |
| OMIM | 305371 |
| Entrez | 2623 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 6 protein_coding
ENST00000376665, ENST00000376670, ENST00000651144, ENST00000696450, ENST00000696451, ENST00000696452
RefSeq mRNA: 1 — MANE Select: NM_002049
NM_002049
CCDS: CCDS14305
Canonical transcript exons
ENST00000376670 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000670935 | 48793172 | 48793297 |
| ENSE00000670936 | 48792323 | 48792468 |
| ENSE00000670938 | 48791844 | 48792221 |
| ENSE00001471304 | 48791091 | 48791329 |
| ENSE00003967425 | 48786590 | 48786645 |
| ENSE00003967426 | 48793793 | 48794311 |
Expression profiles
Bgee: expression breadth ubiquitous, 138 present calls, max score 85.70.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 19.2489 / max 772.5573, expressed in 148 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 196286 | 16.7945 | 141 |
| 196285 | 1.4381 | 90 |
| 196287 | 1.0164 | 88 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 85.70 | gold quality |
| blood | UBERON:0000178 | 85.28 | gold quality |
| bone marrow | UBERON:0002371 | 82.18 | gold quality |
| monocyte | CL:0000576 | 81.20 | gold quality |
| mononuclear cell | CL:0000842 | 80.92 | gold quality |
| leukocyte | CL:0000738 | 79.93 | gold quality |
| bone marrow cell | CL:0002092 | 74.47 | gold quality |
| granulocyte | CL:0000094 | 70.12 | gold quality |
| right lung | UBERON:0002167 | 68.07 | gold quality |
| endometrium epithelium | UBERON:0004811 | 67.03 | gold quality |
| sperm | CL:0000019 | 63.47 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 63.41 | gold quality |
| male germ cell | CL:0000015 | 62.53 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 61.59 | gold quality |
| periodontal ligament | UBERON:0008266 | 61.53 | gold quality |
| upper lobe of lung | UBERON:0008948 | 61.20 | gold quality |
| endothelial cell | CL:0000115 | 59.79 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 59.08 | gold quality |
| spleen | UBERON:0002106 | 58.89 | gold quality |
| triceps brachii | UBERON:0001509 | 58.21 | gold quality |
| gluteal muscle | UBERON:0002000 | 57.85 | gold quality |
| upper leg skin | UBERON:0004262 | 57.27 | silver quality |
| gall bladder | UBERON:0002110 | 56.20 | gold quality |
| cerebellar vermis | UBERON:0004720 | 54.51 | gold quality |
| tibialis anterior | UBERON:0001385 | 53.97 | silver quality |
| lung | UBERON:0002048 | 53.71 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 53.07 | gold quality |
| lower esophagus | UBERON:0013473 | 53.03 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 52.98 | gold quality |
| quadriceps femoris | UBERON:0001377 | 52.80 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 13.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7407 | yes | 322.68 |
| E-MTAB-9067 | yes | 319.48 |
| E-CURD-6 | yes | 233.46 |
| E-CURD-112 | yes | 162.13 |
| E-MTAB-9801 | yes | 157.47 |
| E-HCAD-4 | yes | 152.70 |
| E-HCAD-6 | yes | 129.84 |
| E-MTAB-10042 | yes | 36.30 |
| E-CURD-122 | yes | 20.12 |
| E-HCAD-10 | yes | 16.81 |
| E-MTAB-6701 | yes | 9.89 |
| E-MTAB-9388 | yes | 8.74 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
163 targets.
| Target | Regulation |
|---|---|
| ADAM2 | |
| AGGF1 | Activation |
| AHSP | Unknown |
| ALAS2 | Unknown |
| AMY1A | Unknown |
| APOA1 | Activation |
| BACE1 | Unknown |
| BACH1 | Activation |
| BCL2L1 | Unknown |
| BDKRB1 | Unknown |
| BIRC5 | Unknown |
| BST2 | Activation |
| BTG2 | Activation |
| C1QA | |
| CA1 | Activation |
| CAT | |
| CBFA2T3 | Unknown |
| CBFB | Repression |
| CCL24 | Activation |
| CCND1 | Unknown |
| CCND2 | Repression |
| CCR3 | Unknown |
| CCR5 | Repression |
| CD74 | |
| CD80 | Repression |
| CD86 | Repression |
| CDA | Activation |
| CDC6 | Activation |
| CDK6 | Repression |
| CDKN1A | Unknown |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA0035.4 | GATA1 | C4-GATA-related |
| MA0035.5 | GATA1 | C4-GATA-related |
| MA0140.2 | GATA1::TAL1 | C4-GATA-related::Tal-related |
| MA0140.3 | GATA1::TAL1 | C4-GATA-related::Tal-related |
JASPAR matrix evidence (PMIDs): PMID:23142663, PMID:20566737
Upstream regulators (CollecTRI, top): BCL11A, CBFB, CEBPE, DLX4, ETS1, ETS2, FLI1, GATA1, GATA2, GATA3, GFI1, HBP1, HIF1A, HMGA1, JUN, MECOM, MYB, MYBL1, MYC, MYCN, NR2C1, NR2C2, PKNOX1, POU2F1, RB1, RUNX1, SP1, SP3, SP7, SPI1, TFCP2, TP53, ZFAT, ZNF148
miRNA regulators (miRDB)
8 targeting GATA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-498-5P | 99.76 | 69.64 | 1807 |
| HSA-MIR-12130 | 99.75 | 65.47 | 452 |
| HSA-MIR-876-3P | 98.76 | 68.23 | 945 |
| HSA-MIR-198 | 98.70 | 67.32 | 920 |
| HSA-MIR-4794 | 96.47 | 65.53 | 1063 |
| HSA-MIR-664A-5P | 95.84 | 64.93 | 949 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- The nature of the amino acid substitution at position 218 of the Nf of GATA1 is of crucial importance in determining the severity of the phenotype in X-linked macrothrombocytopenia patients and possibly also in inducing skewed X inactivation. (PMID:11809723)
- Essential and instructive roles of GATA factors in eosinophil development. (PMID:12045236)
- GATA-1 and GATA-2 gene expression is related to the severity of dysplasia in myelodysplastic syndrome. (PMID:12145700)
- findings indicate that loss of wildtype GATA1 constitutes one step in the pathogenesis of acute megakaryoblastic leukemia in Down syndrome (PMID:12172547)
- with NF-E2, mediates expression of alpha-spectrin gene promoter in erythroid cells in vitro (PMID:12196550)
- X-linked thrombocytopenia with thalassemia from a mutation in the amino finger of GATA-1 affects DNA binding rather than FOG-1 interaction. (PMID:12200364)
- Interacts with other transcription factors to regulate transcription of the gene encoding eosinophil granule major basic protein. (PMID:12202480)
- role in regulating megakaryocyte-specific glycoprotein VI promoter (PMID:12359731)
- REVIEW: Roles of hematopoietic transcription factors GATA-1 and GATA-2 in the development of red blood cell lineage (PMID:12432220)
- Erythroid and megakaryocytic lineage differentiation and maturation are regulated via cooperation between transcription factor GATA1 and its essential cofactor FOG1. It depends on the binding of FOG1 to the N-terminal zinc finger of GATA1. (PMID:12483298)
- anthracyclines can induce the erythroid differentiation of neoplastic cells by activating the transcription factor GATA-1, probably via its clustering into nuclear foci. (PMID:12489695)
- levels of GATA-1 and gamma-globin mRNA were increased in cells treated with progesterone; data suggest interactions of steroid receptors with basal transcriptional machinery and with transcription factors might mediate their transcriptional effects (PMID:12490288)
- GATA1 is likely to play a critical role in the etiology of transient myeloproliferative disorder, and mutagenesis of GATA1 represents a very early event in DS myeloid leukemogenesis. (PMID:12560215)
- how RUNX1 might program divergence from the erythroid pathway to the megakaryocytic lineage commitment through functional and physical interactions with GATA-1 (PMID:12576332)
- Findings suggest a model of malignant transformation in Down syndrome AMKL in which GATA1 mutations are an early event and AMKL arises from latent TL clones following initial apparent remission. (PMID:12586620)
- EDRF1 regulated alpha- and gamma-globin gene synthesis by modulating DNA-binding activity of GATA-1 transcription factor. (PMID:12609092)
- findings suggest that acquired intrauterine inactivating mutations in GATA1 and generation of GATA1s cooperate frequently with trisomy 21 in initiating megakaryoblastic proliferation, but are insufficient for progression to AMKL. (PMID:12649131)
- Fli-1 and GATA-1 work together to activate the expression of genes associated with the terminal differentiation of megakaryocytes (PMID:12724402)
- expression of GATA-1 with a defective N-terminal activation domain contributes to the expansion of transient myeloproliferative disorder blast cells and other genetic changes contribute to the development of acute megakaryocytic leukemia in Down syndrome (PMID:12816863)
- GATA-1 instigates GATA-2 repression by means of disruption of positive autoregulation, followed by establishment of a domain-wide repressive chromatin structure. (PMID:12857954)
- GATA1 mutations in Down syndrome and its altered role in DS and myeloid leukemia may lead to an increased understanding of why children with DS are markedly predisposed to leukemia. (review) (PMID:14512321)
- Altogether, these results demonstrate for the first time the implication of GATA-1 in differentiation-specific variations of GSTP1-1 expression (PMID:14623254)
- GATA1 is likely to play a critical role in the etiology of myeloproliferative disorder and Down syndrome acute megakaryoblastic leukemia, and mutagenesis of GATA1 represents a very early event in DS myeloid leukemogenesis (PMID:14636651)
- Mutations in GATA1 occur in Down syndrome, acute Megakaryoblastic Leukemia amd myeloproliferative disorders. (PMID:14656875)
- GATA-1 has a role in erythropoiesis and megakaryocytopoiesis (PMID:14691578)
- Presence of several GATA1 binding sites in the CDAsf promoter and the uniform detection of GATA1 mutations in DS megakaryocytic leukemia suggested the potential role of GATA1 in regulating CDA transcription. (PMID:14744791)
- IL-1beta up-regulates expression in megakaryocytic cells (PMID:14966463)
- mode of vascular regulation in which GATA-1 controls NK-B synthesis in erythroid cells (PMID:15123623)
- Results suggest that the GATA-1 transcription factor represents a cell type-restricted mediator of interferon-gamma induction of the HLA-E gene. (PMID:15226423)
- some cis-elements regulating human and mouse GATA1 genes differ. (PMID:15265794)
- These results define a novel regulatory pathway linking the transcription factors c-Jun, HERP2, and GATA-1. (PMID:15314183)
- Ski cooperates in the process of transformation in erythroid cells by interfering with GATA1 function (PMID:15542823)
- Notch1 inhibits the development of erythroid/megakaryocytic cells by suppressing GATA-1 activity through HES1 (PMID:15563463)
- a multiprotein complex containing GATA-1, Oct-1, and other protein factors may contribute to the formation of a repressive chromatin structure that silences gamma-globin gene expression (PMID:15613485)
- 3D structure of a complex comprising the interaction domains of FOG1 and GATA1 reveals how zinc fingers can act as protein recognition motifs and provides a molecular explanation for how GATA-1 mutations contribute to distinct, related genetic diseases. (PMID:15644435)
- GATA1 protein reveals specific functions of a particular posttranscriptional modification[Review]. (PMID:15684376)
- results are consistent with GATA1 regulating some but not all pathways of platelet activation (PMID:15701726)
- We show that the dominant action of GATA1s leads to hyperproliferation of a unique, previously unrecognized yolk sac and fetal liver progenitor, which we propose accounts for the transient nature of TMD and the restriction of DS-AMKL to infants. (PMID:15895080)
- Mutated in acute myelocytic leukemia combined with acute lymphocytic leukemia in a case report. (PMID:16012335)
- identified an AHSP gene erythroid promoter with functionally important binding sites for GATA-1- and Oct-1-related proteins (PMID:16186125)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gata1a | ENSDARG00000013477 |
| mus_musculus | Gata1 | ENSMUSG00000031162 |
| rattus_norvegicus | Gata1 | ENSRNOG00000047663 |
| drosophila_melanogaster | grn | FBGN0001138 |
| drosophila_melanogaster | srp | FBGN0003507 |
| drosophila_melanogaster | GATAd | FBGN0032223 |
| caenorhabditis_elegans | WBGENE00001250 | |
| caenorhabditis_elegans | WBGENE00001252 |
Paralogs (7): TRPS1 (ENSG00000104447), GATA3 (ENSG00000107485), GATA5 (ENSG00000130700), GATA4 (ENSG00000136574), GATA6 (ENSG00000141448), GATA2 (ENSG00000179348), ZGLP1 (ENSG00000220201)
Protein
Protein identifiers
Erythroid transcription factor — P15976 (reviewed: P15976)
Alternative names: Eryf1, GATA-binding factor 1, NF-E1 DNA-binding protein
All UniProt accessions (5): P15976, A0A8Q3SIN3, A0A8Q3SIP6, A0A8Q3SIT6, B7WNQ9
UniProt curated annotations — full annotation on UniProt →
Function. Transcriptional activator or repressor which serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence 5’-[AT]GATA[AG]-3’ within regulatory regions of globin genes and of other genes expressed in erythroid cells. Activates the transcription of genes involved in erythroid differentiation of K562 erythroleukemia cells, including HBB, HBG1/2, ALAS2 and HMBS.
Subunit / interactions. May form homodimers or heterodimers with other isoforms. Interacts (via the N-terminal zinc finger) with ZFPM1. Interacts with GFI1B. Interacts with PIAS4; the interaction enhances sumoylation and represses the transactivational activity in a sumoylation-independent manner. Interacts with LMCD1. Interacts with BRD3. Interacts with CREBBP; the interaction stimulates acetylation and transcriptional activity in vivo. Interacts with EP300. Interacts with MED1, CCAR1 and CALCOCO1. Interacts with CEBPE.
Subcellular location. Nucleus.
Tissue specificity. Erythrocytes.
Post-translational modifications. Highly phosphorylated on serine residues. Phosphorylation on Ser-310 is enhanced on erythroid differentiation. Phosphorylation on Ser-142 promotes sumoylation on Lys-137. Sumoylation on Lys-137 is enhanced by phosphorylation on Ser-142 and by interaction with PIAS4. Sumoylation with SUMO1 has no effect on transcriptional activity. Acetylated at 2 conserved lysine-rich motifs by CREBBP in vitro. Acetylation does not affect DNA-binding in vitro but is essential to induce erythroid differentiation and for binding chromatin in vivo. Acetylated on Lys-233, Lys-245 Lys-246 by EP300.
Disease relevance. X-linked dyserythropoietic anemia and thrombocytopenia (XDAT) [MIM:300367] Disorder characterized by erythrocytes with abnormal size and shape, and paucity of platelets in peripheral blood. The bone marrow contains abundant and abnormally small megakaryocytes. The disease is caused by variants affecting the gene represented in this entry. Thrombocytopenia with beta-thalassemia, X-linked (XLTT) [MIM:314050] An unusual form of thrombocytopenia associated with beta-thalassemia. Patients have splenomegaly and petechiae, moderate thrombocytopenia, prolonged bleeding time due to platelet dysfunction, reticulocytosis and unbalanced (hemo)globin chain synthesis resembling that of beta-thalassemia minor. The disease is caused by variants affecting the gene represented in this entry. Anemia without thrombocytopenia, X-linked (XLAWT) [MIM:300835] A form of anemia characterized by abnormal morphology of erythrocytes and granulocytes in peripheral blood, bone marrow dysplasia with hypocellularity of erythroid and granulocytic lineages, and normal or increased number of megakaryocytes. Neutropenia of a variable degree is present in affected individuals. The disease is caused by variants affecting the gene represented in this entry. Anemia, congenital, non-spherocytic hemolytic, 9 (CNSHA9) [MIM:301083] An X-linked disorder characterized by onset of mild to moderate red cell anemia soon after birth or in childhood. The anemia is associated with significantly increased adenosine deaminase activity, specifically in erythrocyte precursors. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The two fingers are functionally distinct and cooperate to achieve specific, stable DNA binding. The first finger is necessary only for full specificity and stability of binding, whereas the second one is required for binding.
Miscellaneous. Produced by alternative initiation at Met-84 of isoform 1.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P15976-1 | 1 | yes |
| P15976-2 | 2 | |
| P15976-3 | 3, GATA-1s |
RefSeq proteins (1): NP_002040* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000679 | Znf_GATA | Domain |
| IPR013088 | Znf_NHR/GATA | Homologous_superfamily |
| IPR039355 | Transcription_factor_GATA | Family |
Pfam: PF00320
UniProt features (39 total): modified residue 17, sequence variant 7, region of interest 4, mutagenesis site 4, zinc finger region 2, splice variant 2, chain 1, cross-link 1, compositionally biased region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6G0Q | X-RAY DIFFRACTION | 1.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P15976-F1 | 59.48 | 0.19 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (18): 116, 131, 142, 178, 187, 233, 245, 246, 246, 252, 308, 310, 312, 314, 315, 137, 26, 72
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 137 | abolishes sumoylation. |
| 142 | loss of sumoylation. |
| 142 | increased sumoylation in vitro. |
| 204 | increase of dissociation rate from bound dna. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-8936459 | RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function |
| R-HSA-8939236 | RUNX1 regulates transcription of genes involved in differentiation of HSCs |
| R-HSA-983231 | Factors involved in megakaryocyte development and platelet production |
MSigDB gene sets: 0 (showing top):
GO Biological Process (48): negative regulation of transcription by RNA polymerase II (GO:0000122), in utero embryonic development (GO:0001701), transcription by RNA polymerase II (GO:0006366), positive regulation of cytosolic calcium ion concentration (GO:0007204), cell-cell signaling (GO:0007267), negative regulation of cell population proliferation (GO:0008285), male gonad development (GO:0008584), regulation of glycoprotein biosynthetic process (GO:0010559), regulation of definitive erythrocyte differentiation (GO:0010724), regulation of primitive erythrocyte differentiation (GO:0010725), erythrocyte differentiation (GO:0030218), megakaryocyte differentiation (GO:0030219), platelet formation (GO:0030220), basophil differentiation (GO:0030221), eosinophil differentiation (GO:0030222), bone mineralization (GO:0030282), negative regulation of bone mineralization (GO:0030502), animal organ regeneration (GO:0031100), myeloid cell apoptotic process (GO:0033028), negative regulation of myeloid cell apoptotic process (GO:0033033), osteoblast proliferation (GO:0033687), positive regulation of osteoblast proliferation (GO:0033690), eosinophil fate commitment (GO:0035854), negative regulation of apoptotic process (GO:0043066), positive regulation of mast cell degranulation (GO:0043306), cell fate commitment (GO:0045165), positive regulation of erythrocyte differentiation (GO:0045648), positive regulation of DNA-templated transcription (GO:0045893), positive regulation of transcription by RNA polymerase II (GO:0045944), erythrocyte development (GO:0048821), homeostasis of number of cells within a tissue (GO:0048873), Sertoli cell development (GO:0060009), primitive erythrocyte differentiation (GO:0060319), platelet aggregation (GO:0070527), cellular response to lipopolysaccharide (GO:0071222), cellular response to cAMP (GO:0071320), cellular response to follicle-stimulating hormone stimulus (GO:0071372), dendritic cell differentiation (GO:0097028), negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (GO:2001240), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (20): transcription cis-regulatory region binding (GO:0000976), RNA polymerase II transcription regulatory region sequence-specific DNA binding (GO:0000977), RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), transcription coregulator binding (GO:0001221), transcription coactivator binding (GO:0001223), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), p53 binding (GO:0002039), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), zinc ion binding (GO:0008270), chromatin DNA binding (GO:0031490), sequence-specific DNA binding (GO:0043565), RNA polymerase II-specific DNA-binding transcription factor binding (GO:0061629), C2H2 zinc finger domain binding (GO:0070742), sequence-specific double-stranded DNA binding (GO:1990837), cis-regulatory region sequence-specific DNA binding (GO:0000987), chromatin binding (GO:0003682), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (6): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), transcription regulator complex (GO:0005667), transcription repressor complex (GO:0017053), protein-DNA complex (GO:0032993)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Transcriptional regulation by RUNX1 | 2 |
| Hemostasis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| myeloid cell differentiation | 3 |
| transcription cis-regulatory region binding | 3 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 3 |
| regulation of transcription by RNA polymerase II | 2 |
| regulation of erythrocyte differentiation | 2 |
| granulocyte differentiation | 2 |
| DNA binding | 2 |
| binding | 2 |
| cellular anatomical structure | 2 |
| protein-containing complex | 2 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| chordate embryonic development | 1 |
| DNA-templated transcription | 1 |
| regulation of biological quality | 1 |
| cell communication | 1 |
| signaling | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| gonad development | 1 |
| development of primary male sexual characteristics | 1 |
| glycoprotein biosynthetic process | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| regulation of glycoprotein metabolic process | 1 |
| definitive erythrocyte differentiation | 1 |
| primitive erythrocyte differentiation | 1 |
| erythrocyte homeostasis | 1 |
| platelet morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| cell development | 1 |
| ossification | 1 |
| biomineral tissue development | 1 |
| negative regulation of ossification | 1 |
| bone mineralization | 1 |
| regulation of bone mineralization | 1 |
| negative regulation of biomineral tissue development | 1 |
| regeneration | 1 |
| animal organ development | 1 |
| apoptotic process | 1 |
Protein interactions and networks
STRING
4514 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GATA1 | ZFPM1 | Q8IX07 | 999 |
| GATA1 | TAL1 | P17542 | 998 |
| GATA1 | LMO2 | P25791 | 996 |
| GATA1 | LDB1 | Q86U70 | 996 |
| GATA1 | LDB2 | O43679 | 995 |
| GATA1 | SPI1 | P17947 | 992 |
| GATA1 | TCF3 | P15883 | 991 |
| GATA1 | KLF1 | Q13351 | 986 |
| GATA1 | BRD3 | Q15059 | 986 |
| GATA1 | RUNX1 | Q01196 | 978 |
| GATA1 | GATA2 | P23769 | 974 |
| GATA1 | CBFA2T3 | O75081 | 946 |
| GATA1 | EP300 | Q09472 | 939 |
| GATA1 | SOX6 | P35712 | 916 |
| GATA1 | IKZF1 | Q13422 | 906 |
IntAct
96 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED1 | GATA1 | psi-mi:“MI:0407”(direct interaction) | 0.580 |
| MED1 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.580 |
| GATA1 | TRIP6 | psi-mi:“MI:0914”(association) | 0.570 |
| FRS3 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | PRKAB2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HOXA1 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-5 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CCDC24 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | FBF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RADIL | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | HEXIM2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP9-2 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | FRS3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | HOXA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | CCDC24 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FBF1 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | RADIL | psi-mi:“MI:0915”(physical association) | 0.560 |
| GATA1 | KRTAP10-5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HEXIM2 | GATA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (200): GATA1 (Biochemical Activity), HOXA1 (Two-hybrid), PRKAB2 (Two-hybrid), FRS3 (Two-hybrid), RADIL (Two-hybrid), KRTAP9-2 (Two-hybrid), FBF1 (Two-hybrid), HEXIM2 (Two-hybrid), CCDC24 (Two-hybrid), KRTAP10-5 (Two-hybrid), GATA1 (Two-hybrid), DHX36 (Affinity Capture-MS), TRIP6 (Affinity Capture-MS), GATA1 (Two-hybrid), GATA1 (Two-hybrid)
ESM2 similar proteins: A1XSY8, O08656, O43474, P08046, P08151, P08152, P08154, P09022, P09027, P10070, P11161, P13360, P15976, P17679, P18146, P19544, P22561, P26632, P26633, P31249, P40656, P43300, P43301, P43429, P46153, P47806, P49639, P49952, P50476, P51774, Q05159, Q06889, Q07424, Q08427, Q0VGT2, Q29W20, Q60793, Q61169, Q6NW96, Q6P0J3
Diamond homologs: B4XXY3, B7WN96, G5EB20, G5EGF4, G5EGN3, N4XMB0, O09100, O13412, O13415, O13508, O61924, O94720, P15976, P17429, P17678, P17679, P19212, P23767, P23768, P23769, P23770, P23771, P23772, P23773, P23824, P23825, P26343, P28515, P40349, P42944, P43429, P43574, P43691, P43692, P43693, P43694, P43695, P43696, P46152, P46153
SIGNOR signaling
47 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AKT1 | up-regulates | GATA1 | phosphorylation |
| GATA1 | “down-regulates quantity by repression” | ZNF268 | “transcriptional regulation” |
| AKT | up-regulates | GATA1 | phosphorylation |
| GATA1 | “down-regulates quantity by repression” | HBG2 | “transcriptional regulation” |
| GATA1 | “down-regulates quantity by repression” | HBG1 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | SPTA1 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | RUNX1T1 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | GP6 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | GP9 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | MPL | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | AGGF1 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | GP1BA | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | ITGA2B | “transcriptional regulation” |
| GATA1 | “up-regulates activity” | RUNX1 | binding |
| GATA1 | “up-regulates quantity by expression” | FCER1A | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | GFI1B | “transcriptional regulation” |
| GATA1 | “down-regulates quantity by repression” | HOXA10 | “transcriptional regulation” |
| DAB2IP | “up-regulates activity” | GATA1 | binding |
| GATA1 | “down-regulates quantity by repression” | KIT | “transcriptional regulation” |
| GATA1 | “down-regulates activity” | SPI1 | binding |
| GATA1 | “up-regulates quantity by expression” | FLI1 | “transcriptional regulation” |
| GATA2 | “up-regulates quantity by expression” | GATA1 | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | GATA1 | “transcriptional regulation” |
| GATA1 | “down-regulates quantity by repression” | GATA2 | “transcriptional regulation” |
| GATA1 | “up-regulates activity” | ZFPM1 | binding |
| GATA1 | “up-regulates quantity” | CYBB | “transcriptional regulation” |
| GATA1 | “up-regulates quantity by expression” | NBEAL2 | “transcriptional regulation” |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
432 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 59 |
| Likely pathogenic | 16 |
| Uncertain significance | 189 |
| Likely benign | 96 |
| Benign | 27 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 10423 | NM_002049.4(GATA1):c.613G>A (p.Val205Met) | Pathogenic |
| 10425 | NM_002049.4(GATA1):c.622_623delinsTC (p.Gly208Ser) | Pathogenic |
| 10426 | NM_002049.4(GATA1):c.184_187dup (p.Tyr63fs) | Pathogenic |
| 10427 | NM_002049.4(GATA1):c.652G>T (p.Asp218Tyr) | Pathogenic |
| 10428 | NM_002049.4(GATA1):c.647G>A (p.Arg216Gln) | Pathogenic |
| 10429 | NM_002049.4(GATA1):c.154_173dup (p.Ala59fs) | Pathogenic |
| 1068556 | NM_002049.4(GATA1):c.231_232dup (p.Tyr78fs) | Pathogenic |
| 1068653 | NM_002049.4(GATA1):c.3G>T (p.Met1Ile) | Pathogenic |
| 1068952 | NM_002049.4(GATA1):c.105dup (p.Ser36fs) | Pathogenic |
| 1070439 | NM_002049.4(GATA1):c.157_158insTG (p.Ala53fs) | Pathogenic |
| 1414934 | NM_002049.4(GATA1):c.192_196del (p.Arg64fs) | Pathogenic |
| 1428144 | NM_002049.4(GATA1):c.173_174insCGCTGCGC (p.Leu60fs) | Pathogenic |
| 150422 | GRCh38/hg38 Xp22.33-q28(chrX:1085618-155699644)x1 | Pathogenic |
| 156266 | NM_002049.4(GATA1):c.220G>C (p.Val74Leu) | Pathogenic |
| 1703852 | NM_002049.4(GATA1):c.865C>T (p.His289Tyr) | Pathogenic |
| 2031831 | NM_002049.4(GATA1):c.169_170insTG (p.Ala57fs) | Pathogenic |
| 2090004 | NM_002049.4(GATA1):c.164_174dup (p.Ala59fs) | Pathogenic |
| 2111449 | NM_002049.4(GATA1):c.122_165del (p.Leu41fs) | Pathogenic |
| 2125356 | NM_002049.4(GATA1):c.155_174dup (p.Ala59fs) | Pathogenic |
| 2424348 | NC_000023.10:g.(?48542243)(48652571_?)del | Pathogenic |
| 2500744 | NM_002049.4(GATA1):c.470_471del (p.Pro157fs) | Pathogenic |
| 2578025 | NM_002049.4(GATA1):c.886A>C (p.Thr296Pro) | Pathogenic |
| 2941504 | NM_002049.4(GATA1):c.186C>G (p.Tyr62Ter) | Pathogenic |
| 2944455 | NM_002049.4(GATA1):c.71_92dup (p.Phe33fs) | Pathogenic |
| 2945727 | NM_002049.4(GATA1):c.194_206del (p.Asp65fs) | Pathogenic |
| 2948168 | NM_002049.4(GATA1):c.125_146del (p.Asp42fs) | Pathogenic |
| 2950118 | NM_002049.4(GATA1):c.182_183insGTGC (p.Tyr62fs) | Pathogenic |
| 2952845 | NM_002049.4(GATA1):c.-4_21del (p.Met1fs) | Pathogenic |
| 2952846 | NM_002049.4(GATA1):c.220+1G>T | Pathogenic |
| 31942 | NM_002049.4(GATA1):c.220+1del | Pathogenic |
SpliceAI
493 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:48792314:C:G | acceptor_gain | 1.0000 |
| X:48792321:A:AG | acceptor_gain | 1.0000 |
| X:48792322:G:GG | acceptor_gain | 1.0000 |
| X:48793167:CCTA:C | acceptor_loss | 1.0000 |
| X:48793169:TA:T | acceptor_loss | 1.0000 |
| X:48793170:A:AG | acceptor_gain | 1.0000 |
| X:48793171:G:GG | acceptor_gain | 1.0000 |
| X:48793171:GATT:G | acceptor_gain | 1.0000 |
| X:48791086:CGCA:C | acceptor_loss | 0.9900 |
| X:48791087:GCAG:G | acceptor_loss | 0.9900 |
| X:48791088:CAG:C | acceptor_loss | 0.9900 |
| X:48791325:CCCAG:C | donor_loss | 0.9900 |
| X:48791327:CAGGT:C | donor_loss | 0.9900 |
| X:48791328:AGGT:A | donor_loss | 0.9900 |
| X:48791329:GGTAA:G | donor_loss | 0.9900 |
| X:48791330:G:GA | donor_loss | 0.9900 |
| X:48791331:T:G | donor_loss | 0.9900 |
| X:48791824:T:G | acceptor_gain | 0.9900 |
| X:48791829:A:AG | acceptor_gain | 0.9900 |
| X:48791830:C:G | acceptor_gain | 0.9900 |
| X:48791842:A:AG | acceptor_gain | 0.9900 |
| X:48791843:G:GA | acceptor_gain | 0.9900 |
| X:48791843:GT:G | acceptor_gain | 0.9900 |
| X:48791843:GTC:G | acceptor_gain | 0.9900 |
| X:48792043:GC:G | donor_gain | 0.9900 |
| X:48792044:C:G | donor_gain | 0.9900 |
| X:48792069:G:GT | donor_gain | 0.9900 |
| X:48792313:A:AG | acceptor_gain | 0.9900 |
| X:48792318:A:AG | acceptor_gain | 0.9900 |
| X:48792319:C:G | acceptor_gain | 0.9900 |
AlphaMissense
2601 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:48792334:T:A | C204S | 1.000 |
| X:48792334:T:C | C204R | 1.000 |
| X:48792335:G:A | C204Y | 1.000 |
| X:48792335:G:C | C204S | 1.000 |
| X:48792335:G:T | C204F | 1.000 |
| X:48792336:T:G | C204W | 1.000 |
| X:48792342:C:A | N206K | 1.000 |
| X:48792342:C:G | N206K | 1.000 |
| X:48792343:T:A | C207S | 1.000 |
| X:48792343:T:C | C207R | 1.000 |
| X:48792343:T:G | C207G | 1.000 |
| X:48792344:G:A | C207Y | 1.000 |
| X:48792344:G:C | C207S | 1.000 |
| X:48792344:G:T | C207F | 1.000 |
| X:48792345:C:G | C207W | 1.000 |
| X:48792359:C:T | T212I | 1.000 |
| X:48792365:T:A | L214Q | 1.000 |
| X:48792365:T:C | L214P | 1.000 |
| X:48792367:T:A | W215R | 1.000 |
| X:48792367:T:C | W215R | 1.000 |
| X:48792368:G:C | W215S | 1.000 |
| X:48792369:G:C | W215C | 1.000 |
| X:48792369:G:T | W215C | 1.000 |
| X:48792371:G:C | R216P | 1.000 |
| X:48792377:A:T | D218V | 1.000 |
| X:48792386:G:T | G221V | 1.000 |
| X:48792395:T:C | L224P | 1.000 |
| X:48792397:T:A | C225S | 1.000 |
| X:48792397:T:C | C225R | 1.000 |
| X:48792398:G:A | C225Y | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000294498 (X:48788632 G>A), RS1002307724 (X:48793521 T>C), RS1003174822 (X:48794756 T>C), RS1003370502 (X:48785653 T>C), RS1004238521 (X:48787324 C>T), RS1004374552 (X:48787740 T>C), RS1004436762 (X:48788144 G>A,T), RS1005252003 (X:48789474 A>G), RS1007314672 (X:48794441 A>T), RS1007343451 (X:48785029 A>C), RS1009350195 (X:48789206 C>T), RS1009471392 (X:48788740 G>A), RS1009868215 (X:48791578 C>T), RS1012009323 (X:48785704 C>G), RS1012389468 (X:48786105 G>A)
Disease associations
OMIM: gene MIM:305371 | disease phenotypes: MIM:159595, MIM:300367, MIM:300835, MIM:314050, MIM:105650, MIM:102730, MIM:301083, MIM:190685, MIM:263700
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| GATA1-Related X-Linked Cytopenia | Definitive | X-linked |
| thrombocytopenia, X-linked, with or without dyserythropoietic anemia | Strong | X-linked |
| Diamond-Blackfan anemia | Strong | X-linked |
| beta-thalassemia-X-linked thrombocytopenia syndrome | Moderate | X-linked |
| X-linked dyserythropoetic anemia with abnormal platelets and neutropenia | Supportive | X-linked |
| thrombocytopenia with congenital dyserythropoietic anemia | Supportive | X-linked |
| cutaneous porphyria | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| GATA1-Related X-Linked Cytopenia | Definitive | XL |
Mondo (14): transient myeloproliferative syndrome (MONDO:0008040), thrombocytopenia, X-linked, with or without dyserythropoietic anemia (MONDO:0010308), X-linked dyserythropoetic anemia with abnormal platelets and neutropenia (MONDO:0010444), beta-thalassemia-X-linked thrombocytopenia syndrome (MONDO:0010745), Diamond-Blackfan anemia (MONDO:0015253), hemolytic anemia due to erythrocyte adenosine deaminase overproduction (MONDO:0020458), GATA1-Related X-Linked Cytopenia (MONDO:0100089), thrombocytopenia (MONDO:0002049), acute megakaryoblastic leukemia (MONDO:0018872), Down syndrome (MONDO:0008608), cutaneous porphyria (MONDO:0009902), acute megakaryoblastic leukemia in down syndrome (MONDO:0020526), anemia (MONDO:0002280), thrombocytopenia with congenital dyserythropoietic anemia (MONDO:0019031)
Orphanet (10): Diamond-Blackfan anemia (Orphanet:124), Beta-thalassemia-X-linked thrombocytopenia syndrome (Orphanet:231393), X-linked dyserythropoietic anemia with abnormal platelets and neutropenia (Orphanet:363727), Transient myeloproliferative syndrome (Orphanet:420611), Thrombocytopenia with congenital dyserythropoietic anemia (Orphanet:67044), Hemolytic anemia due to erythrocyte adenosine deaminase overproduction (Orphanet:99138), Acute megakaryoblastic leukemia (Orphanet:518), Down syndrome (Orphanet:870), Congenital erythropoietic porphyria (Orphanet:79277), Acute megakaryoblastic leukemia in children with Down syndrome (Orphanet:99887)
HPO phenotypes
140 total (30 of 140 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000028 | Cryptorchidism |
| HP:0000047 | Hypospadias |
| HP:0000085 | Horseshoe kidney |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000185 | Cleft soft palate |
| HP:0000218 | High palate |
| HP:0000234 | Abnormality of the head |
| HP:0000252 | Microcephaly |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000421 | Epistaxis |
| HP:0000431 | Wide nasal bridge |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000519 | Developmental cataract |
| HP:0000618 | Blindness |
| HP:0000656 | Ectropion |
| HP:0000912 | Sprengel anomaly |
| HP:0000938 | Osteopenia |
| HP:0000939 | Osteoporosis |
| HP:0000953 | Hyperpigmentation of the skin |
| HP:0000967 | Petechiae |
| HP:0000969 | Edema |
| HP:0000978 | Bruising susceptibility |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002381_500 | Eosinophil count | 1.000000e-29 |
| GCST90002381_501 | Eosinophil count | 5.000000e-09 |
| GCST90002382_521 | Eosinophil percentage of white cells | 1.000000e-41 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004842 | eosinophil count |
| EFO:0007991 | eosinophil percentage of leukocytes |
MeSH disease descriptors (9)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000740 | Anemia | C15.378.050 |
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
| D004314 | Down Syndrome | C10.597.606.360.220; C16.131.077.327; C16.131.260.260; C16.320.180.260 |
| D007947 | Leukemia, Megakaryoblastic, Acute | C04.557.337.539.275.450; C15.378.508.539.275.450 |
| D017092 | Porphyria, Erythropoietic | C16.320.850.738; C17.800.827.738; C18.452.811.250 |
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
| C566314 | Adenosine Deaminase, Elevated, Hemolytic Anemia Due To (supp.) | |
| C563551 | Myeloproliferative Syndrome, Transient (supp.) | |
| C564050 | Thrombocytopenia, Platelet Dysfunction, Hemolysis, and Imbalanced Globin Synthesis (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Hemin | increases reaction, decreases reaction, affects expression, decreases expression, increases expression | 4 |
| hydroquinone | decreases reaction, increases expression, affects binding, decreases expression | 3 |
| Butyric Acid | decreases reaction, increases expression | 3 |
| hydroxyhydroquinone | affects methylation, decreases reaction, increases expression | 2 |
| catechol | increases expression, increases reaction | 2 |
| Decitabine | affects cotreatment, increases expression, decreases reaction | 2 |
| Doxorubicin | affects binding, increases reaction, increases activity, increases expression | 2 |
| Quercetin | increases expression, affects cotreatment, decreases reaction | 2 |
| Zidovudine | decreases activity, decreases expression | 2 |
| Aclarubicin | decreases reaction, increases expression, affects binding, increases reaction, increases activity | 2 |
| Phenol | decreases reaction, increases expression | 2 |
| trichostatin A | increases expression, affects cotreatment | 1 |
| arsenite | decreases methylation | 1 |
| cobaltous chloride | decreases expression | 1 |
| pyrrolidine dithiocarbamic acid | decreases reaction, increases expression | 1 |
| anagrelide | decreases reaction, increases expression | 1 |
| lysophosphatidic acid | increases reaction, decreases reaction, affects cotreatment, increases expression | 1 |
| arsenic disulfide | increases expression | 1 |
| tellimagrandin I | decreases reaction, increases expression, decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chebulinic acid | decreases expression, decreases reaction, increases expression | 1 |
| pomalidomide | decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Acetylcysteine | decreases reaction, increases expression | 1 |
| Allergens | increases expression | 1 |
| Arsenic | affects binding, decreases activity, decreases reaction | 1 |
| Ascorbic Acid | affects cotreatment, increases expression | 1 |
Cellosaurus cell lines
11 cell lines: 6 cancer cell line, 3 embryonic stem cell, 2 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A107 | KPAM1 | Cancer cell line | Female |
| CVCL_A2F1 | SEES3-1V human GATA1, clone1 | Embryonic stem cell | Male |
| CVCL_A2F2 | SEES3-1V human GATA1, clone2 | Embryonic stem cell | Male |
| CVCL_A2F3 | SEES3-1V human GATA1, clone3 | Embryonic stem cell | Male |
| CVCL_B8GP | Abcam HCT 116 GATA1 KO | Cancer cell line | Male |
| CVCL_B8W8 | Abcam MCF-7 GATA1 KO | Cancer cell line | Female |
| CVCL_B9IX | Abcam A-549 GATA1 KO | Cancer cell line | Male |
| CVCL_C1NU | CHOPi008-A | Induced pluripotent stem cell | Male |
| CVCL_C1NV | CHOPi008-B | Induced pluripotent stem cell | Male |
| CVCL_S965 | HSC-GRW | Cancer cell line | Sex unspecified |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT03522207 | PHASE4 | TERMINATED | Accuracy and Efficacy of Trazodone (Desyrel) on Sleep Quality and Pain Management of TMD Patient |
| NCT07401745 | PHASE4 | ACTIVE_NOT_RECRUITING | Occlusal Splint Combined With Granisetron Injection for Management of Myofascial Pain Related to Temporomandibular Disorders |
| NCT00039858 | PHASE4 | COMPLETED | Evaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin |
| NCT00239733 | PHASE4 | TERMINATED | Anti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection |
| NCT00907478 | PHASE4 | COMPLETED | Study on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP) |
| NCT01727401 | PHASE4 | TERMINATED | Thromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia |
| NCT02032134 | PHASE4 | TERMINATED | Protocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia |
| NCT02267993 | PHASE4 | COMPLETED | Efficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients |
| NCT03633019 | PHASE4 | UNKNOWN | High-dose Use of rhTPO in CIT Patients |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04906083 | PHASE4 | UNKNOWN | Avatrombopag in Patients With End-stage Liver Disease and Thrombocytopenia |
| NCT05217719 | PHASE4 | UNKNOWN | Effects of Recombinant Human Thrombopoietin on Platelet Levels in ICU Patients |
| NCT05255003 | PHASE4 | RECRUITING | STrategies for Anticoagulation in Patients With thRombocytopenia and Cancer-associated Thrombosis |
| NCT05382013 | PHASE4 | UNKNOWN | Efficacy and Safety of Avatrombopag for Treating TCP in HBV-ACLF Patients Receiving ALSS Treatment |
| NCT05944458 | PHASE4 | COMPLETED | Efficacy of Intravenous N-Acetylcysteine in Preventing Linezolid-Induced Thrombocytopenia in Critically Ill Patients |
| NCT06562738 | PHASE4 | RECRUITING | Clinical Study on Efficacy and Safety of Hetrombopag in the Preoperative Patients of Thrombocytopenia |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00037791 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00039910 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00073580 | PHASE3 | COMPLETED | Angiomax in Patients With HIT/HITTS Type II Undergoing Off-Pump Coronary Artery Bypass Grafting (CABG) (CHOOSE) |
| NCT00102323 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Refractory to Splenectomy |
| NCT00102336 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Prior to Splenectomy |
| NCT00116688 | PHASE3 | COMPLETED | Open Label Extension Study of Romiplostim (AMG 531) in Thrombocytopenic Patients With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) |
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Related Atlas pages
- Associated diseases: beta-thalassemia-X-linked thrombocytopenia syndrome, GATA1-Related X-Linked Cytopenia, thrombocytopenia, X-linked, with or without dyserythropoietic anemia, Diamond-Blackfan anemia, X-linked dyserythropoetic anemia with abnormal platelets and neutropenia, thrombocytopenia with congenital dyserythropoietic anemia, cutaneous porphyria
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute megakaryoblastic leukemia, acute megakaryoblastic leukemia in down syndrome, anemia, beta-thalassemia-X-linked thrombocytopenia syndrome, cutaneous porphyria, Diamond-Blackfan anemia, Down syndrome, GATA1-Related X-Linked Cytopenia, hemolytic anemia due to erythrocyte adenosine deaminase overproduction, thrombocytopenia, thrombocytopenia with congenital dyserythropoietic anemia, thrombocytopenia, X-linked, with or without dyserythropoietic anemia, transient myeloproliferative syndrome, X-linked dyserythropoetic anemia with abnormal platelets and neutropenia