GATD1-DT

Summary

GATD1-DT (GATD1 divergent transcript, HGNC:29907) is a long non-coding RNA gene on chromosome 11p15.5.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:29907
Approved symbol	GATD1-DT
Name	GATD1 divergent transcript
Location	11p15.5
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255284
Ensembl biotype	lncRNA
Entrez	171391
RNAcentral	URS00007E4A9D — lncRNA, 640 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000525941, ENST00000526588, ENST00000530083, ENST00000623846, ENST00000655766, ENST00000701716, ENST00000717773, ENST00000717774, ENST00000717775, ENST00000717776, ENST00000717777, ENST00000717778, ENST00000717779, ENST00000717780, ENST00000779744, ENST00000779745, ENST00000779746, ENST00000779747, ENST00000779748, ENST00000779749, ENST00000779750, ENST00000779751

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000525941 — 4 exons

Exon	Start	End
ENSE00004033397	784024	784298
ENSE00004033404	783530	783671
ENSE00004033405	778113	778218
ENSE00004150506	777572	777695

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 88.68.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	88.68	gold quality
right hemisphere of cerebellum	UBERON:0014890	88.11	gold quality
cerebellar hemisphere	UBERON:0002245	87.57	gold quality
cerebellar cortex	UBERON:0002129	87.45	gold quality
cerebellum	UBERON:0002037	87.33	gold quality
lower esophagus mucosa	UBERON:0035834	86.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.06	gold quality
apex of heart	UBERON:0002098	85.83	gold quality
nucleus accumbens	UBERON:0001882	84.63	gold quality
caudate nucleus	UBERON:0001873	84.28	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	84.22	gold quality
pituitary gland	UBERON:0000007	84.04	gold quality
liver	UBERON:0002107	83.98	gold quality
substantia nigra	UBERON:0002038	83.85	gold quality
right frontal lobe	UBERON:0002810	83.79	gold quality
primary visual cortex	UBERON:0002436	83.74	gold quality
amygdala	UBERON:0001876	83.71	gold quality
putamen	UBERON:0001874	83.65	gold quality
temporal lobe	UBERON:0001871	83.62	gold quality
hypothalamus	UBERON:0001898	83.59	gold quality
Ammon’s horn	UBERON:0001954	83.51	gold quality
brain	UBERON:0000955	83.49	gold quality
anterior cingulate cortex	UBERON:0009835	83.26	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	82.97	gold quality
adenohypophysis	UBERON:0002196	82.81	gold quality
Brodmann (1909) area 9	UBERON:0013540	82.71	gold quality
mucosa of transverse colon	UBERON:0004991	82.50	gold quality
cerebral cortex	UBERON:0000956	82.14	gold quality
cortex of kidney	UBERON:0001225	82.14	gold quality
adult mammalian kidney	UBERON:0000082	82.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.84

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.