GCDH
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Also known as ACAD5GCD
Summary
GCDH (glutaryl-CoA dehydrogenase, HGNC:4189) is a protein-coding gene on chromosome 19p13.13, encoding Glutaryl-CoA dehydrogenase, mitochondrial (Q92947). Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism.
The protein encoded by this gene belongs to the acyl-CoA dehydrogenase family. It catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor. The enzyme exists in the mitochondrial matrix as a homotetramer of 45-kD subunits. Mutations in this gene result in the metabolic disorder glutaric aciduria type 1, which is also known as glutaric acidemia type I. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene has been identified on chromosome 12.
Source: NCBI Gene 2639 — RefSeq curated summary.
At a glance
- Gene–disease (curated): glutaryl-CoA dehydrogenase deficiency (Definitive, ClinGen)
- GWAS associations: 30
- Clinical variants (ClinVar): 939 total — 112 pathogenic, 100 likely-pathogenic
- Phenotypes (HPO): 78
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_000159
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4189 |
| Approved symbol | GCDH |
| Name | glutaryl-CoA dehydrogenase |
| Location | 19p13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ACAD5, GCD |
| Ensembl gene | ENSG00000105607 |
| Ensembl biotype | protein_coding |
| OMIM | 608801 |
| Entrez | 2639 |
Gene structure
Transcript identifiers
Ensembl transcripts: 39 — 27 protein_coding, 6 retained_intron, 5 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000222214, ENST00000421816, ENST00000585420, ENST00000585760, ENST00000587072, ENST00000587832, ENST00000588242, ENST00000588905, ENST00000589039, ENST00000590445, ENST00000590472, ENST00000590530, ENST00000590627, ENST00000591043, ENST00000591050, ENST00000591470, ENST00000714067, ENST00000714068, ENST00000714069, ENST00000714070, ENST00000714071, ENST00000714072, ENST00000714073, ENST00000714074, ENST00000714075, ENST00000909379, ENST00000909380, ENST00000909381, ENST00000909382, ENST00000909383, ENST00000909384, ENST00000909385, ENST00000909386, ENST00000909387, ENST00000940007, ENST00000940008, ENST00000940009, ENST00000954316, ENST00000954317
RefSeq mRNA: 2 — MANE Select: NM_000159
NM_000159, NM_013976
CCDS: CCDS12286
Canonical transcript exons
ENST00000222214 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001409053 | 12891160 | 12891202 |
| ENSE00003515811 | 12896205 | 12896421 |
| ENSE00003523833 | 12893483 | 12893653 |
| ENSE00003533412 | 12896910 | 12897013 |
| ENSE00003552047 | 12897303 | 12897428 |
| ENSE00003566094 | 12892116 | 12892178 |
| ENSE00003616291 | 12891487 | 12891522 |
| ENSE00003643085 | 12891831 | 12891974 |
| ENSE00003669873 | 12899468 | 12899999 |
| ENSE00003683570 | 12895992 | 12896121 |
| ENSE00004022711 | 12891271 | 12891395 |
| ENSE00004022716 | 12897703 | 12897863 |
Expression profiles
Bgee: expression breadth ubiquitous, 259 present calls, max score 96.57.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.6186 / max 162.8225, expressed in 1801 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 174037 | 13.6186 | 1801 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 96.57 | gold quality |
| liver | UBERON:0002107 | 93.93 | gold quality |
| apex of heart | UBERON:0002098 | 93.11 | gold quality |
| heart left ventricle | UBERON:0002084 | 90.77 | gold quality |
| cardiac ventricle | UBERON:0002082 | 90.40 | gold quality |
| right ovary | UBERON:0002118 | 90.20 | gold quality |
| gastrocnemius | UBERON:0001388 | 89.94 | gold quality |
| left ovary | UBERON:0002119 | 89.74 | gold quality |
| muscle of leg | UBERON:0001383 | 89.56 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 89.34 | gold quality |
| body of stomach | UBERON:0001161 | 89.10 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 88.70 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.67 | gold quality |
| tibial nerve | UBERON:0001323 | 88.46 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 88.43 | gold quality |
| right atrium auricular region | UBERON:0006631 | 88.31 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 88.26 | gold quality |
| heart | UBERON:0000948 | 88.24 | gold quality |
| lower esophagus | UBERON:0013473 | 88.24 | gold quality |
| left uterine tube | UBERON:0001303 | 88.14 | gold quality |
| nucleus accumbens | UBERON:0001882 | 87.89 | gold quality |
| left adrenal gland | UBERON:0001234 | 87.84 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 87.83 | gold quality |
| caudate nucleus | UBERON:0001873 | 87.72 | gold quality |
| putamen | UBERON:0001874 | 87.55 | gold quality |
| popliteal artery | UBERON:0002250 | 87.53 | gold quality |
| tibial artery | UBERON:0007610 | 87.50 | gold quality |
| granulocyte | CL:0000094 | 87.41 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 87.41 | gold quality |
| left coronary artery | UBERON:0001626 | 87.16 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ENAD-17 | no | 471.33 |
| E-GEOD-100618 | no | 210.90 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXO1
miRNA regulators (miRDB)
31 targeting GCDH, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-7856-5P | 99.75 | 69.99 | 2901 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-3714 | 99.71 | 70.74 | 2671 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-6733-3P | 99.54 | 67.80 | 1281 |
| HSA-MIR-7515 | 99.31 | 68.22 | 1795 |
| HSA-MIR-4477B | 99.23 | 70.49 | 1733 |
| HSA-MIR-361-3P | 99.19 | 66.45 | 1381 |
| HSA-MIR-4796-3P | 99.08 | 68.38 | 1681 |
| HSA-MIR-3145-3P | 98.85 | 69.07 | 2031 |
| HSA-MIR-210-5P | 98.57 | 64.37 | 832 |
| HSA-MIR-6870-3P | 98.08 | 65.10 | 692 |
| HSA-MIR-12120 | 98.05 | 68.44 | 1768 |
| HSA-MIR-6819-5P | 97.96 | 66.59 | 1071 |
| HSA-MIR-4469 | 97.93 | 65.81 | 1319 |
| HSA-MIR-7111-3P | 97.80 | 66.75 | 1467 |
| HSA-MIR-6737-5P | 97.75 | 66.54 | 1044 |
| HSA-MIR-6812-5P | 97.56 | 65.39 | 1059 |
| HSA-MIR-6855-5P | 97.51 | 66.03 | 830 |
| HSA-MIR-12128 | 96.67 | 66.98 | 1471 |
| HSA-MIR-6085 | 96.57 | 64.11 | 621 |
| HSA-MIR-3170 | 95.84 | 64.32 | 721 |
| HSA-MIR-6813-5P | 94.68 | 64.20 | 588 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 37)
- In the oxidative decarboxylation of glutaryl-coenzyme A (CoA) that is catalyzed by glutaryl-CoA dehydrogenase, glutaconyl-CoA is the presumed enzyme-bound intermediate. (PMID:11705404)
- Three-dimensional structures of human GCD in uncomplexed form and in complex with 4-nitrobutyryl-CoA are reported, and the structural bases for the mechanisms of the dehydrogenation and decarboxylation reactions are proposed. (PMID:15274622)
- The authors report two GCDH-deficient patients with macrocephaly presenting with progressive neurologic deterioration and a severe leukoencephalopathy during adolescence or adulthood. (PMID:15985591)
- An autosomal recessive disease thsat leads to an accumulation of glutaric and 3-hydroxyglutaric acids and secondary carnitine deficiency, (review) (PMID:16368216)
- The major rate-determining step in the steady-state turnover of glutaryl-CoA dehydrogenase (GCD) occurs at the release of crotonyl-CoA product; the chemical steps and reoxidation of reduced FAD are much faster than the turnover of wild-type GCD. (PMID:17176108)
- GA I is caused by mutations in the GCDH gene, encoding glutaryl-CoA dehydrogenase. (PMID:17661081)
- Expression studies of four missense mutations in GCDH indicate that both enzyme instability and impaired enzyme function can underlie the autosomal recessive neurometabolic disorder glutaric aciduria type I. (PMID:18775954)
- Cerebral toxicity caused by GCDH deficiency may induce a state of arteriolar dilation and increased cerebral blood volume. (PMID:20032085)
- mutational analysis of glutaryl-CoA dehydrogenase in two patients with glutaric aciduria type 1. (PMID:20514322)
- 12 glutaric aciduria type 1 patients were found homozygous for the same A293T mutation in the glutaryl-CoA dehydrogenase (GCDH) gene. (PMID:20732827)
- GCDH gene mutations are identified in 8 patients with glutaric aciduria type I (PMID:21811973)
- A homozygous, disease-segregating mutation (p.Val400Met) was identified in the glutaryl-CoA dehydrogenase (GCDH) gene at chromosome 19p13. (PMID:21912879)
- physiological concentrations of flavin adenine dinucleotide resulted in a spectacular enhancement of the thermal stabilities of GCDH and prevented enzymatic activity loss (PMID:21968293)
- These cells displayed decreased levels of GCDH tetramer. (PMID:22231382)
- Identification of GCDH gene mutations in four patients with glutaric academia type I. (PMID:23225040)
- 29 GCDH mutations were identified in 23 glutaric aciduria type 1 patients, including 11 novel mutations (PMID:24332224)
- 2 novel mutations, p.Glu64Asp and p.Gly268Val, account for majority of disease alleles in Cypriot patients with Glutaric aciduria type I; a founder effect for the p.Glu64Asp and the p.Gly268Val can be suggested based on place of origin of mutation carriers (PMID:24973495)
- Data indicate a homozygous c.1244-2A> C mutation of the glutaryl-CoA dehydrogenase (GCDH) gene in both patients. (PMID:25297592)
- Point mutation of GCDH gene is associated with glutaric academia type I. (PMID:25863083)
- Mutations in GCDH gene observed in the present study indicate genetic heterogeneity in GCDH gene among South Indian population. No definite genotype-phenotype correlations were observed. (PMID:26071121)
- We report the allele frequencies for three known Glutaric aciduria type I low excretors GCDH variants (M405V, V400M and R227P) and note that both the M405V and V400M variants are significantly more common in the population of African ancestry compared to the general population (PMID:27397597)
- Our data underscore the impact of GCDH protein interactions mediated by amino acid residues on the surface of GCDH required for proper enzymatic activity (PMID:28062662)
- Molecular genetics analysis identified 14 different mutations in the GCDH gene in the 18 patients with Glutaric acidemia I (PMID:28389991)
- Four mutations of the glutaryl-CoA dehydrogenase (GCDH) gene were identified among the patients with diagnosis of glutaric acidemia type I (GA-I). (PMID:29419857)
- Homozygous pathogenic missense variant in GCDH gene is associated with glutaric aciduria, type I. (PMID:30203563)
- mutational analysis of variants in the GCDH gene in Chinese families affected with glutaric acidemia type 1 (PMID:30512148)
- We provide a rationale for the possible interallelic complementation observed in heterozygous Glutaric Aciduria Type I patients based on the fact that in GCDH, the low active p.Arg227Pro variant contributes to stabilize the tetramer while the structurally unstable p.Val400Met variant compensates for enzyme activity. (PMID:31491587)
- The GCDH gene variant probably underliee the glutaric aciduria type I (PMID:31515781)
- Molecular and biochemical study of glutaric aciduria type 1 in 49 Russian families: nine novel mutations in the GCDH gene. (PMID:32240488)
- Functional Recovery of a GCDH Variant Associated to Severe Deflavinylation-Molecular Insights into Potential Beneficial Effects of Riboflavin Supplementation in Glutaric Aciduria-Type I Patients. (PMID:32992790)
- Clinical, biochemical and molecular findings of 24 Brazilian patients with glutaric acidemia type 1: 4 novel mutations in the GCDH gene. (PMID:33064266)
- Glutaric acidemia type 1: Treatment and outcome of 168 patients over three decades. (PMID:33069577)
- The first knock-in rat model for glutaric aciduria type I allows further insights into pathophysiology in brain and periphery. (PMID:33965309)
- Identification of novel pathogenic variants in the GCDH gene and assessment of neurodevelopmental outcomes in 24 children with glutaric aciduria type 1. (PMID:35662016)
- Two novel compound heterozygous variants of the GCDH gene in two Chinese families with glutaric acidaemia type I identified by high-throughput sequencing and a literature review. (PMID:36906724)
- Biochemical and molecular features of chinese patients with glutaric acidemia type 1 from Fujian Province, southeastern China. (PMID:37496092)
- Glutaryl-CoA dehydrogenase suppresses tumor progression and shapes an anti-tumor microenvironment in hepatocellular carcinoma. (PMID:38825017)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gcdha | ENSDARG00000037057 |
| danio_rerio | gcdhb | ENSDARG00000098831 |
| mus_musculus | Gcdh | ENSMUSG00000003809 |
| rattus_norvegicus | Gcdh | ENSRNOG00000003307 |
| drosophila_melanogaster | CG9547 | FBGN0031824 |
| caenorhabditis_elegans | WBGENE00010052 |
Paralogs (14): ACADVL (ENSG00000072778), ACOX3 (ENSG00000087008), ACAD10 (ENSG00000111271), ACADL (ENSG00000115361), ACADM (ENSG00000117054), ACADS (ENSG00000122971), IVD (ENSG00000128928), ACAD8 (ENSG00000151498), ACOXL (ENSG00000153093), ACOX1 (ENSG00000161533), ACOX2 (ENSG00000168306), ACAD9 (ENSG00000177646), ACADSB (ENSG00000196177), ACAD11 (ENSG00000240303)
Protein
Protein identifiers
Glutaryl-CoA dehydrogenase, mitochondrial — Q92947 (reviewed: Q92947)
All UniProt accessions (15): Q92947, A0AAQ5BHB0, A0AAQ5BHC1, A0AAQ5BHD5, A0AAQ5BHE4, A0AAQ5BHF4, A0AAQ5BHF9, A0AAQ5BHH9, K7EKH1, K7EKT3, K7EQ99, K7ER63, K7ERX1, K7ES74, K7ESA6
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor. Isoform Short is inactive.
Subunit / interactions. Homotetramer.
Subcellular location. Mitochondrion matrix.
Tissue specificity. Isoform Long and isoform Short are expressed in fibroblasts and liver.
Disease relevance. Glutaric aciduria 1 (GA1) [MIM:231670] An autosomal recessive metabolic disorder characterized by progressive dystonia and athetosis due to gliosis and neuronal loss in the basal ganglia. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Strongly inhibited by MCPA-CoA, a metabolite of hypoglycin which is present in unripened fruit of the ackee tree.
Pathway. Amino-acid metabolism; lysine degradation. Amino-acid metabolism; tryptophan metabolism.
Similarity. Belongs to the acyl-CoA dehydrogenase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q92947-1 | Long | yes |
| Q92947-2 | Short |
RefSeq proteins (2): NP_000150, NP_039663 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006089 | Acyl-CoA_DH_CS | Conserved_site |
| IPR006091 | AcylCoA_DH/ox_M | Domain |
| IPR009075 | AcylCo_DH/oxidase_C | Domain |
| IPR009100 | AcylCoA_DH/oxidase_NM_dom_sf | Homologous_superfamily |
| IPR013786 | AcylCoA_DH/ox_N | Domain |
| IPR036250 | AcylCo_DH-like_C | Homologous_superfamily |
| IPR037069 | AcylCoA_DH/ox_N_sf | Homologous_superfamily |
| IPR046373 | Acyl-CoA_Oxase/DH_mid-dom_sf | Homologous_superfamily |
| IPR052033 | GCDH | Family |
Pfam: PF00441, PF02770, PF02771
Enzyme classification (BRENDA):
- EC 1.3.8.6 — glutaryl-CoA dehydrogenase (ETF) (BRENDA: 13 organisms, 56 substrates, 14 inhibitors, 38 Km, 30 kcat entries)
Substrate kinetics (BRENDA)
17 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| GLUTARYL-COA | 0.0034–3.8 | 15 |
| ELECTRON TRANSFER FLAVOPROTEIN | 0.0002–0.0011 | 5 |
| 4-NITROBUTYRYL-COA | 0.014 | 1 |
| 5-HEXENOYL-COA | 0.105 | 1 |
| CROTONYL-COA | 0.004 | 1 |
| GLUTACONYL-COA | 0.003 | 1 |
| GLUTARAMYL-COA | 0.0066 | 1 |
| GLUTARYLPANTETHEINE | 2 | 1 |
| HEXANOYL-COA | 0.085 | 1 |
| HUMAN ELECTRON-TRANSFER FLAVOPROTEIN | 0.042 | 1 |
| METHYL-GLUTARYL-COA | 0.02 | 1 |
| PENTANOYL-COA | 0.024 | 1 |
| DICHLOROPHENOLINDOPHENOL | — | 0 |
| ELECTRON-TRANSFER FLAVOPROTEIN | — | 0 |
| FERROCENIUM HEXAFLUOROPHOSPHATE | — | 0 |
Catalyzed reactions (Rhea), 1 shown:
- glutaryl-CoA + oxidized [electron-transfer flavoprotein] + 2 H(+) = (2E)-butenoyl-CoA + reduced [electron-transfer flavoprotein] + CO2 (RHEA:13389)
UniProt features (107 total): sequence variant 60, helix 19, binding site 11, strand 9, transit peptide 1, chain 1, modified residue 1, splice variant 1, active site 1, mutagenesis site 1, sequence conflict 1, turn 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1SIQ | X-RAY DIFFRACTION | 2.1 |
| 2R0N | X-RAY DIFFRACTION | 2.3 |
| 1SIR | X-RAY DIFFRACTION | 2.6 |
| 2R0M | X-RAY DIFFRACTION | 2.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q92947-F1 | 92.23 | 0.89 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 414 (proton acceptor)
Ligand- & substrate-binding residues (11): 387–391; 415; 416–418; 434; 138–139; 177–186; 186; 212–214; 287–294; 319; 330
Post-translational modifications (1): 240
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 414 | reduced catalytic activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-71064 | Lysine catabolism |
MSigDB gene sets: 336 (showing top):
GOBP_LIPID_MODIFICATION, GOBP_FATTY_ACID_CATABOLIC_PROCESS, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_ACETYL_COA_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_FATTY_ACID_BETA_OXIDATION_USING_ACYL_COA_DEHYDROGENASE, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_FATTY_ACYL_COA_METABOLIC_PROCESS, GOBP_SULFUR_COMPOUND_BIOSYNTHETIC_PROCESS
GO Biological Process (5): obsolete L-tryptophan metabolic process (GO:0006568), fatty acid beta-oxidation using acyl-CoA dehydrogenase (GO:0033539), fatty-acyl-CoA biosynthetic process (GO:0046949), acyl-CoA metabolic process (GO:0006637), fatty acid oxidation (GO:0019395)
GO Molecular Function (6): fatty-acyl-CoA binding (GO:0000062), glutaryl-CoA dehydrogenase activity (GO:0004361), flavin adenine dinucleotide binding (GO:0050660), acyl-CoA dehydrogenase activity (GO:0003995), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
GO Cellular Component (2): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| acyl-CoA dehydrogenase activity | 2 |
| fatty acid beta-oxidation | 1 |
| fatty-acyl-CoA metabolic process | 1 |
| acyl-CoA biosynthetic process | 1 |
| fatty acid derivative biosynthetic process | 1 |
| nucleoside phosphate metabolic process | 1 |
| sulfur compound metabolic process | 1 |
| purine-containing compound metabolic process | 1 |
| fatty acid metabolic process | 1 |
| lipid oxidation | 1 |
| acyl-CoA binding | 1 |
| fatty acid derivative binding | 1 |
| nucleotide binding | 1 |
| anion binding | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor | 1 |
| catalytic activity | 1 |
| oxidoreductase activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
2392 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GCDH | GUCY2D | Q02846 | 752 |
| GCDH | SUGCT | Q9HAC7 | 750 |
| GCDH | NPR2 | P20594 | 739 |
| GCDH | NPR1 | P16066 | 678 |
| GCDH | VPS35 | Q96QK1 | 665 |
| GCDH | GUCA2B | Q16661 | 646 |
| GCDH | ETFDH | Q16134 | 601 |
| GCDH | GUCA2A | Q02747 | 593 |
| GCDH | GUCY2F | P51841 | 591 |
| GCDH | ECSIT | Q9BQ95 | 587 |
| GCDH | GUCA1A | P43080 | 557 |
| GCDH | ETFB | P38117 | 541 |
| GCDH | ETFA | P13804 | 539 |
| GCDH | ECHS1 | P30084 | 531 |
| GCDH | OMP | P47874 | 518 |
IntAct
71 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PFDN4 | PFDN6 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| KSR2 | POLR3A | psi-mi:“MI:0914”(association) | 0.530 |
| GCDH | NOS3 | psi-mi:“MI:0914”(association) | 0.520 |
| GCDH | NOS3 | psi-mi:“MI:0915”(physical association) | 0.520 |
| NOS3 | GCDH | psi-mi:“MI:0403”(colocalization) | 0.520 |
| PSEN1 | GCDH | psi-mi:“MI:0914”(association) | 0.480 |
| GCDH | PSEN1 | psi-mi:“MI:0915”(physical association) | 0.480 |
| GCDH | psi-mi:“MI:0407”(direct interaction) | 0.440 | |
| GCDH | psi-mi:“MI:0945”(oxidoreductase activity electron transfer reaction) | 0.440 | |
| GCDH | ETFDH | psi-mi:“MI:0945”(oxidoreductase activity electron transfer reaction) | 0.440 |
| GCDH | GRB2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| A2M | GCDH | psi-mi:“MI:0915”(physical association) | 0.370 |
| GCDH | APOE | psi-mi:“MI:0915”(physical association) | 0.370 |
| GCDH | CDC37 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ECSIT | GCDH | psi-mi:“MI:0915”(physical association) | 0.370 |
| EXOC6 | GCDH | psi-mi:“MI:0915”(physical association) | 0.370 |
| RNF32 | GCDH | psi-mi:“MI:0915”(physical association) | 0.370 |
| SIRT4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (110): ISCA1 (Affinity Capture-MS), MARS2 (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS), ISCA1 (Affinity Capture-MS), MARS2 (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Proximity Label-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS), GCDH (Affinity Capture-MS)
ESM2 similar proteins: A9W6K8, B1M597, B1ZEN4, B7KRF3, O00154, O85343, P00393, P04182, P0A1A1, P0A1A2, P0A8Z0, P0A8Z1, P0A8Z2, P0A959, P0A960, P0A961, P0A9Q7, P0A9Q8, P24175, P26341, P35815, P36993, P37742, P42398, P44886, P49136, P49139, P77748, P80147, P81140, P93394, P93596, Q01411, Q0II68, Q43971, Q64559, Q6GPC6, Q7SZM9, Q89AL4, Q8BHJ5
Diamond homologs: A1A789, A5A6I0, A7ZHD0, A7ZVY9, A8WP91, A8XNF0, B1IRD7, B1LFX2, B1WC61, B1XBG4, B4EY23, B5YYD3, B6HYZ0, B7L4G2, B7LWN0, B7MAG2, B7MNP6, B7N7R4, B7NHE3, B7UI85, C3UVB0, C4ZPW5, D3JV03, F8GVD3, G3KIM8, H6LGM6, J7TF92, O32176, O34421, O54143, P08503, P11310, P12007, P15650, P15651, P16219, P26440, P28330, P41367, P45857
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
939 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 112 |
| Likely pathogenic | 100 |
| Uncertain significance | 192 |
| Likely benign | 342 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1028582 | NM_000159.4(GCDH):c.1243+1G>T | Pathogenic |
| 1066567 | NM_000159.4(GCDH):c.1213dup (p.Met405fs) | Pathogenic |
| 1070251 | NM_000159.4(GCDH):c.1168G>A (p.Gly390Arg) | Pathogenic |
| 1070459 | NM_000159.4(GCDH):c.91G>T (p.Glu31Ter) | Pathogenic |
| 1072735 | NM_000159.4(GCDH):c.905T>C (p.Leu302Pro) | Pathogenic |
| 1074476 | NM_000159.4(GCDH):c.463T>C (p.Tyr155His) | Pathogenic |
| 1162199 | NM_000159.4(GCDH):c.505+1G>A | Pathogenic |
| 1361482 | NM_000159.4(GCDH):c.1116del (p.Asn373fs) | Pathogenic |
| 1381101 | NM_000159.4(GCDH):c.661_662del (p.Leu221fs) | Pathogenic |
| 1381918 | NM_000159.4(GCDH):c.542_543del (p.Glu181fs) | Pathogenic |
| 1383061 | NM_000159.4(GCDH):c.467G>T (p.Gly156Val) | Pathogenic |
| 1383091 | NM_000159.4(GCDH):c.775T>C (p.Ser259Pro) | Pathogenic |
| 1426297 | NM_000159.4(GCDH):c.1211C>G (p.Ala404Gly) | Pathogenic |
| 1454092 | NM_000159.4(GCDH):c.1064_1065insATTG (p.Lys357fs) | Pathogenic |
| 1454846 | NM_000159.4(GCDH):c.998A>G (p.Gln333Arg) | Pathogenic |
| 1457194 | NM_000159.4(GCDH):c.736_737del (p.Ser246fs) | Pathogenic |
| 1458728 | NC_000019.9:g.(?13004287)(13008687_?)del | Pathogenic |
| 1458803 | NM_000159.4(GCDH):c.222C>A (p.Tyr74Ter) | Pathogenic |
| 1459658 | NC_000019.9:g.(?13001426)(13004353_?)del | Pathogenic |
| 1459696 | NM_000159.4(GCDH):c.275T>G (p.Phe92Cys) | Pathogenic |
| 1460079 | NC_000019.9:g.(?12996012)(13004373_?)del | Pathogenic |
| 1685842 | NM_000159.4(GCDH):c.671T>G (p.Val224Gly) | Pathogenic |
| 188921 | NM_000159.4(GCDH):c.416C>T (p.Ser139Leu) | Pathogenic |
| 188946 | NM_000159.4(GCDH):c.1060G>A (p.Gly354Ser) | Pathogenic |
| 189030 | NM_000159.4(GCDH):c.271+1G>A | Pathogenic |
| 189066 | NM_000159.4(GCDH):c.1239C>A (p.Tyr413Ter) | Pathogenic |
| 189150 | NM_000159.4(GCDH):c.262C>T (p.Arg88Cys) | Pathogenic |
| 191375 | NM_000159.4(GCDH):c.675G>A (p.Trp225Ter) | Pathogenic |
| 1951275 | NM_000159.4(GCDH):c.831_834dup (p.Gly279fs) | Pathogenic |
| 2016415 | NM_000159.4(GCDH):c.524del (p.Gly175fs) | Pathogenic |
SpliceAI
2565 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:12891391:GACCG:G | donor_gain | 1.0000 |
| 19:12891396:GTC:G | donor_loss | 1.0000 |
| 19:12891829:A:AG | acceptor_gain | 1.0000 |
| 19:12891830:G:GG | acceptor_gain | 1.0000 |
| 19:12891933:A:T | donor_gain | 1.0000 |
| 19:12891972:AAG:A | donor_loss | 1.0000 |
| 19:12891974:GGTG:G | donor_loss | 1.0000 |
| 19:12891975:G:T | donor_loss | 1.0000 |
| 19:12891976:T:G | donor_loss | 1.0000 |
| 19:12893472:A:AG | acceptor_gain | 1.0000 |
| 19:12895987:TGCA:T | acceptor_loss | 1.0000 |
| 19:12895989:CAGCC:C | acceptor_loss | 1.0000 |
| 19:12895990:A:AG | acceptor_gain | 1.0000 |
| 19:12895991:G:GA | acceptor_gain | 1.0000 |
| 19:12895991:GC:G | acceptor_gain | 1.0000 |
| 19:12895991:GCC:G | acceptor_gain | 1.0000 |
| 19:12895991:GCCA:G | acceptor_gain | 1.0000 |
| 19:12895991:GCCAA:G | acceptor_gain | 1.0000 |
| 19:12896117:ACCTG:A | donor_gain | 1.0000 |
| 19:12896118:CCTG:C | donor_gain | 1.0000 |
| 19:12896119:CTG:C | donor_gain | 1.0000 |
| 19:12896120:TGG:T | donor_loss | 1.0000 |
| 19:12896122:G:GG | donor_gain | 1.0000 |
| 19:12896122:G:T | donor_loss | 1.0000 |
| 19:12896123:T:A | donor_loss | 1.0000 |
| 19:12896203:A:AG | acceptor_gain | 1.0000 |
| 19:12896203:AG:A | acceptor_gain | 1.0000 |
| 19:12896204:G:GG | acceptor_gain | 1.0000 |
| 19:12896204:GG:G | acceptor_gain | 1.0000 |
| 19:12896417:TGGGG:T | donor_gain | 1.0000 |
AlphaMissense
2835 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:12893572:A:C | S142R | 0.995 |
| 19:12893574:T:A | S142R | 0.995 |
| 19:12893574:T:G | S142R | 0.995 |
| 19:12893551:A:C | S135R | 0.994 |
| 19:12893553:T:A | S135R | 0.994 |
| 19:12893553:T:G | S135R | 0.994 |
| 19:12896952:T:A | W299R | 0.993 |
| 19:12896952:T:C | W299R | 0.993 |
| 19:12897733:G:C | K371N | 0.993 |
| 19:12897733:G:T | K371N | 0.993 |
| 19:12897838:C:A | N406K | 0.993 |
| 19:12897838:C:G | N406K | 0.993 |
| 19:12896014:C:G | C176W | 0.991 |
| 19:12896015:T:C | F177L | 0.991 |
| 19:12896017:C:A | F177L | 0.991 |
| 19:12896017:C:G | F177L | 0.991 |
| 19:12897773:G:C | A385P | 0.991 |
| 19:12897777:G:C | R386P | 0.991 |
| 19:12896242:T:A | W225R | 0.990 |
| 19:12896242:T:C | W225R | 0.990 |
| 19:12897768:G:C | R383P | 0.990 |
| 19:12893561:G:T | R138M | 0.989 |
| 19:12896276:T:C | F236S | 0.989 |
| 19:12897797:G:T | G393W | 0.989 |
| 19:12897840:T:C | L407P | 0.989 |
| 19:12896116:G:C | K210N | 0.988 |
| 19:12896116:G:T | K210N | 0.988 |
| 19:12896120:T:A | W212R | 0.987 |
| 19:12896120:T:C | W212R | 0.987 |
| 19:12896981:C:G | C308W | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000188362 (19:12889429 T>A), RS1001073929 (19:12899198 G>A,C), RS1001078446 (19:12891064 G>A), RS1001746097 (19:12893879 C>G), RS1002345759 (19:12892363 C>T), RS1002785239 (19:12892650 T>G), RS1003067446 (19:12889185 G>A), RS1003540493 (19:12892253 C>T), RS1003611285 (19:12893590 G>A,T), RS1004054783 (19:12893011 G>T), RS1004105748 (19:12892669 A>C,G), RS1004479121 (19:12890714 G>A), RS1005091447 (19:12896843 A>G), RS1006105904 (19:12889839 T>C), RS1006150317 (19:12891875 G>A,T)
Disease associations
OMIM: gene MIM:608801 | disease phenotypes: MIM:231670, MIM:615872, MIM:613673, MIM:608804, MIM:276710
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| glutaryl-CoA dehydrogenase deficiency | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| glutaryl-CoA dehydrogenase deficiency | Definitive | AR |
Mondo (6): glutaryl-CoA dehydrogenase deficiency (MONDO:0009281), primary ciliary dyskinesia 29 (MONDO:0014378), congenital dyserythropoietic anemia type 4 (MONDO:0013355), hypomyelinating leukodystrophy 2 (MONDO:0012125), tyrosinemia type III (MONDO:0010162), intellectual disability (MONDO:0001071)
Orphanet (8): Glutaryl-CoA dehydrogenase deficiency (Orphanet:25), Primary ciliary dyskinesia (Orphanet:244), Hereditary persistence of fetal hemoglobin-sickle cell disease syndrome (Orphanet:251380), Congenital dyserythropoietic anemia type IV (Orphanet:293825), Pelizaeus-Merzbacher-like disease (Orphanet:280270), Pelizaeus-Merzbacher-like disease due to GJC2 mutation (Orphanet:280282), Tyrosinemia type 3 (Orphanet:69723), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
78 total (30 of 78 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000238 | Hydrocephalus |
| HP:0000256 | Macrocephaly |
| HP:0000573 | Retinal hemorrhage |
| HP:0000726 | Dementia |
| HP:0000737 | Irritability |
| HP:0000750 | Delayed speech and language development |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001260 | Dysarthria |
| HP:0001263 | Global developmental delay |
| HP:0001264 | Spastic diplegia |
| HP:0001266 | Choreoathetosis |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001332 | Dystonia |
| HP:0001334 | Communicating hydrocephalus |
| HP:0001337 | Tremor |
| HP:0001344 | Absent speech |
| HP:0001373 | Joint dislocation |
| HP:0001508 | Failure to thrive |
| HP:0001942 | Metabolic acidosis |
| HP:0001943 | Hypoglycemia |
| HP:0001946 | Ketosis |
| HP:0002015 | Dysphagia |
| HP:0002059 | Cerebral atrophy |
| HP:0002063 | Rigidity |
| HP:0002072 | Chorea |
| HP:0002086 | Abnormality of the respiratory system |
GWAS associations
30 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000504_6 | Mean corpuscular hemoglobin | 1.000000e-11 |
| GCST002595_9 | Clozapine-induced agranulocytosis | 1.000000e-06 |
| GCST004601_186 | Red blood cell count | 4.000000e-42 |
| GCST004602_263 | Mean corpuscular volume | 3.000000e-79 |
| GCST004602_264 | Mean corpuscular volume | 1.000000e-10 |
| GCST004605_77 | Mean corpuscular hemoglobin concentration | 1.000000e-16 |
| GCST004619_109 | Reticulocyte fraction of red cells | 1.000000e-27 |
| GCST004622_74 | Reticulocyte count | 2.000000e-19 |
| GCST004630_58 | Mean corpuscular hemoglobin | 5.000000e-86 |
| GCST004630_59 | Mean corpuscular hemoglobin | 2.000000e-10 |
| GCST012020_536 | Serum metabolite levels | 2.000000e-30 |
| GCST90002385_497 | High light scatter reticulocyte count | 2.000000e-14 |
| GCST90002385_498 | High light scatter reticulocyte count | 1.000000e-47 |
| GCST90002386_68 | High light scatter reticulocyte percentage of red cells | 2.000000e-23 |
| GCST90002390_526 | Mean corpuscular hemoglobin | 4.000000e-121 |
| GCST90002390_527 | Mean corpuscular hemoglobin | 1.000000e-44 |
| GCST90002391_105 | Mean corpuscular hemoglobin concentration | 5.000000e-29 |
| GCST90002392_65 | Mean corpuscular volume | 2.000000e-109 |
| GCST90002392_66 | Mean corpuscular volume | 2.000000e-41 |
| GCST90002396_20 | Mean reticulocyte volume | 3.000000e-34 |
| GCST90002397_189 | Mean spheric corpuscular volume | 3.000000e-61 |
| GCST90002397_190 | Mean spheric corpuscular volume | 2.000000e-11 |
| GCST90002403_278 | Red blood cell count | 6.000000e-68 |
| GCST90002403_279 | Red blood cell count | 2.000000e-11 |
| GCST90002403_280 | Red blood cell count | 1.000000e-11 |
| GCST90002404_564 | Red cell distribution width | 1.000000e-41 |
| GCST90002404_565 | Red cell distribution width | 3.000000e-31 |
| GCST90002405_535 | Reticulocyte count | 6.000000e-49 |
| GCST90002406_488 | Reticulocyte fraction of red cells | 6.000000e-40 |
| GCST90002406_489 | Reticulocyte fraction of red cells | 3.000000e-11 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0004305 | erythrocyte count |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0007986 | reticulocyte count |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| C536833 | Glutaric Acidemia I (supp.) | |
| C563855 | Leukodystrophy, Hypomyelinating, 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3817721 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 8,319 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1201346 | BALSALAZIDE | 4 | 8,319 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
8 potent at pChembl≥5 of 13 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.83 | Kd | 148.4 | nM | CHEMBL5653589 |
| 6.77 | ED50 | 169.5 | nM | CHEMBL5653589 |
| 5.47 | Kd | 3400 | nM | CHEMBL6172265 |
| 5.19 | Kd | 6480 | nM | CHEMBL3752910 |
| 5.16 | Kd | 6900 | nM | CHEMBL6159541 |
| 5.13 | ED50 | 7401 | nM | CHEMBL3752910 |
| 5.11 | Kd | 7700 | nM | CHEMBL6146742 |
| 5.09 | Kd | 8200 | nM | CHEMBL6148176 |
PubChem BioAssay actives
2 with measured affinity, of 12 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148421: Binding affinity to human GCDH incubated for 45 mins by Kinobead based pull down assay | kd | 0.1484 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148421: Binding affinity to human GCDH incubated for 45 mins by Kinobead based pull down assay | kd | 6.4796 | uM |
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects methylation, decreases expression, increases expression | 3 |
| Benzo(a)pyrene | decreases expression, affects methylation | 3 |
| Valproic Acid | increases expression | 3 |
| Cyclosporine | decreases expression, increases expression | 3 |
| Aflatoxin B1 | affects expression, decreases expression | 3 |
| bisphenol A | increases expression, decreases expression | 2 |
| cobaltous chloride | decreases expression | 2 |
| perfluorooctanoic acid | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| bisphenol F | increases expression | 1 |
| lasiocarpine | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| trichostatin A | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | decreases ADP-ribosylation | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| bisphenol S | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Atrazine | decreases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Gold | affects binding, decreases expression | 1 |
| Phenobarbital | decreases expression | 1 |
ChEMBL screening assays
15 unique, capped per target: 14 binding, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3821393 | ADMET | Binding affinity to GCDH in human HepG2 assessed as intensity fold change of cumulated normalized intensity of protein between capture and competition assay at 100 uM after 1 hr in presence of active Tcp-CC-13 by differential competition ca | Identification of Potential Off-target Toxicity Liabilities of Catechol-O-methyltransferase Inhibitors by Differential Competition Capture Compound Mass Spectrometry. — J Med Chem |
| CHEMBL5118487 | Binding | Binding affinity to GCDH in human MCF7 cell lysate by pull down assay based LC-MS/MS analysis | Development of hetero-triaryls as a new chemotype for subtype-selective and potent Sirt5 inhibition. — Eur J Med Chem |
Cellosaurus cell lines
18 cell lines: 11 finite cell line, 6 cancer cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_AT07 | GM05002 | Finite cell line | Male |
| CVCL_AT09 | GM10650 | Finite cell line | Female |
| CVCL_AT10 | GM10652 | Finite cell line | Male |
| CVCL_AT11 | GM10653 | Finite cell line | Female |
| CVCL_AT12 | GM12028 | Finite cell line | Sex unspecified |
| CVCL_AT13 | GM12029 | Finite cell line | Sex unspecified |
| CVCL_AT39 | GM16392 | Finite cell line | Female |
| CVCL_AT40 | GM16393 | Finite cell line | Female |
| CVCL_AT41 | GM16394 | Finite cell line | Male |
| CVCL_AT42 | GM16395 | Finite cell line | Male |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT06217861 | PHASE1 | RECRUITING | A Study to Evaluate the Tolerability, Safety and Efficacy of VGM-R02b |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT05910151 | Not specified | UNKNOWN | Selective Screening of Children for Hereditary Metabolic Diseases by Tandem Mass Spectrometry in Kazakhstan |
| NCT04196959 | Not specified | COMPLETED | Evaluation of TYR Sphere |
| NCT06298292 | Not specified | NOT_YET_RECRUITING | Acceptability/Tolerance of Protein Substitutes in Tablet Form for the Dietary Management of Rare Aminoacidopathies |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
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Related Atlas pages
- Associated diseases: glutaryl-CoA dehydrogenase deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital dyserythropoietic anemia type 4, glutaryl-CoA dehydrogenase deficiency, hypomyelinating leukodystrophy 2, primary ciliary dyskinesia 29, tyrosinemia type III