GDF1
gene geneOn this page
Summary
GDF1 (growth differentiation factor 1, HGNC:4214) is a protein-coding gene on chromosome 19p13.11, encoding Embryonic growth/differentiation factor 1 (P27539). May mediate cell differentiation events during embryonic development.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer. Studies in rodents suggest that this protein is involved in the establishment of left-right asymmetry in early embryogenesis and in neural development in later embryogenesis. The encoded protein is translated from a bicistronic mRNA that also encodes ceramide synthase 1. Mutations in this gene are associated with several congenital cardiovascular malformations.
Source: NCBI Gene 2657 — RefSeq curated summary.
At a glance
- Gene–disease (curated): right atrial isomerism (Strong, GenCC) — +2 more curated relationships
- Clinical variants (ClinVar): 48 total — 2 pathogenic
- Phenotypes (HPO): 39
- MANE Select transcript:
NM_001492
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4214 |
| Approved symbol | GDF1 |
| Name | growth differentiation factor 1 |
| Location | 19p13.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000130283 |
| Ensembl biotype | protein_coding |
| OMIM | 602880 |
| Entrez | 2657 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000247005
RefSeq mRNA: 2 — MANE Select: NM_001492
NM_001387438, NM_001492
CCDS: CCDS42526
Canonical transcript exons
ENST00000247005 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003216808 | 18895824 | 18896158 |
| ENSE00003487192 | 18878930 | 18879039 |
| ENSE00003514787 | 18868545 | 18869390 |
| ENSE00003596244 | 18869983 | 18870619 |
| ENSE00003605222 | 18893416 | 18893575 |
| ENSE00003623667 | 18880274 | 18880435 |
| ENSE00003634351 | 18884087 | 18884267 |
| ENSE00003662986 | 18879241 | 18879388 |
Expression profiles
Bgee: expression breadth broad, 34 present calls, max score 64.32.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.0664 / max 340.4213, expressed in 983 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 180104 | 11.0664 | 983 |
| 180105 | 1.2490 | 464 |
Top tissues by expression
123 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primary visual cortex | UBERON:0002436 | 64.32 | gold quality |
| sural nerve | UBERON:0015488 | 62.40 | silver quality |
| superior frontal gyrus | UBERON:0002661 | 61.19 | gold quality |
| ganglionic eminence | UBERON:0004023 | 51.90 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 44.86 | gold quality |
| cortical plate | UBERON:0005343 | 43.03 | gold quality |
| colonic epithelium | UBERON:0000397 | 41.50 | gold quality |
| muscle tissue | UBERON:0002385 | 39.50 | gold quality |
| prefrontal cortex | UBERON:0000451 | 38.98 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 38.44 | gold quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| bone marrow cell | CL:0002092 | 36.16 | gold quality |
| frontal cortex | UBERON:0001870 | 32.29 | gold quality |
| bone marrow | UBERON:0002371 | 31.74 | gold quality |
| tonsil | UBERON:0002372 | 31.69 | gold quality |
| stromal cell of endometrium | CL:0002255 | 29.87 | gold quality |
| liver | UBERON:0002107 | 29.66 | gold quality |
| duodenum | UBERON:0002114 | 28.14 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 28.04 | gold quality |
| lymph node | UBERON:0000029 | 27.57 | gold quality |
| cerebral cortex | UBERON:0000956 | 27.23 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 26.62 | gold quality |
| islet of Langerhans | UBERON:0000006 | 26.55 | gold quality |
| vermiform appendix | UBERON:0001154 | 26.42 | gold quality |
| gall bladder | UBERON:0002110 | 25.98 | gold quality |
| pancreas | UBERON:0001264 | 25.86 | gold quality |
| placenta | UBERON:0001987 | 25.83 | gold quality |
| muscle of leg | UBERON:0001383 | 25.82 | gold quality |
| blood | UBERON:0000178 | 25.73 | gold quality |
| urinary bladder | UBERON:0001255 | 25.72 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 13)
- Heterozygous loss-of-function mutations in the human GDF1 gene contribute to cardiac defects ranging from tetralogy of Fallot to transposition of the great arteries. (PMID:17924340)
- GDF1 expression is correlated with progression and aggressive behaviors in cervical cancer, suggesting a tumor-promoting role for GDF1 in the progression of this malignancy. (PMID:19359031)
- Molecular genetic basis of a kindred with 5 siblings with right atrial isomerism involved mutations in GDF1. (PMID:20413652)
- GDF1 may be associated with congenital heart defects risk, and these variations contribute at least in part to the development of some subtypes of conotruncal defects in the Chinese Han population. (PMID:23076529)
- indicate that the expression of growth/differentiation factor 1 (GDF1) is up-regulated in human dilated cardiomyopathy (DCM)hearts and murine hypertrophic hearts. (PMID:24275554)
- This implies that Gdf1 potentiates Nodal activity by stabilizing a low molecular weight fraction that is susceptible to neutralization by soluble Acvr2. (PMID:24798330)
- Our results suggest that the GDF1 rs4808863 polymorphism contributes to an increased risk of fetal CHDs, especially the subtypes of AVSD, LVOTO and left-right laterality defects. (PMID:26656983)
- Rare inherited and de novo variants in 2,871 congenital heart disease probands identified GDF1, MYH6, and FLT4 as causative genes. (PMID:28991257)
- Nkx2.5 acts upstream of GDF1 and the genetic variants in GDF1 promoter may confer genetic susceptibility to sporadic CHD potentially by altering its expression. (PMID:31171573)
- A founder truncating variant in GDF1 causes autosomal-recessive right isomerism and associated congenital heart defects in multiplex Arab kindreds. (PMID:32144877)
- Arsenic suppresses GDF1 expression via ROS-dependent downregulation of specificity protein 1. (PMID:33360347)
- Homozygous variants in the GDF1 gene related to recurrent right isomerism and complex CHD in two Indian families. (PMID:35351224)
- Human colorectal cancer: upregulation of the adaptor protein Rai in TILs leads to cell dysfunction by sustaining GSK-3 activation and PD-1 expression. (PMID:38175205)
Cross-species orthologs
1 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Gdf1 | ENSMUSG00000109523 |
Paralogs (31): TGFB2 (ENSG00000092969), BMP7 (ENSG00000101144), TGFB1 (ENSG00000105329), BMP5 (ENSG00000112175), BMP8B (ENSG00000116985), TGFB3 (ENSG00000119699), INHBA (ENSG00000122641), INHA (ENSG00000123999), BMP4 (ENSG00000125378), BMP2 (ENSG00000125845), GDF5 (ENSG00000125965), BMP15 (ENSG00000130385), GDF15 (ENSG00000130513), GDF11 (ENSG00000135414), MSTN (ENSG00000138379), INHBE (ENSG00000139269), LEFTY2 (ENSG00000143768), GDF7 (ENSG00000143869), BMP3 (ENSG00000152785), BMP6 (ENSG00000153162), GDF6 (ENSG00000156466), NODAL (ENSG00000156574), INHBB (ENSG00000163083), BMP10 (ENSG00000163217), GDF9 (ENSG00000164404), INHBC (ENSG00000175189), BMP8A (ENSG00000183682), GDF3 (ENSG00000184344), LEFTY1 (ENSG00000243709), GDF2 (ENSG00000263761), GDF10 (ENSG00000266524)
Protein
Protein identifiers
Embryonic growth/differentiation factor 1 — P27539 (reviewed: P27539)
All UniProt accessions (1): P27539
UniProt curated annotations — full annotation on UniProt →
Function. May mediate cell differentiation events during embryonic development.
Subunit / interactions. Homodimer; disulfide-linked.
Subcellular location. Secreted.
Tissue specificity. Expressed in the brain.
Disease relevance. Conotruncal heart malformations (CTHM) [MIM:217095] A group of congenital heart defects involving the outflow tracts. Examples include truncus arteriosus communis, double-outlet right ventricle and transposition of great arteries. Truncus arteriosus communis is characterized by a single outflow tract instead of a separate aorta and pulmonary artery. In transposition of the great arteries, the aorta arises from the right ventricle and the pulmonary artery from the left ventricle. In double outlet of the right ventricle, both the pulmonary artery and aorta arise from the right ventricle. The disease is caused by variants affecting the gene represented in this entry. Congenital heart defects, multiple types, 6 (CHTD6) [MIM:613854] An autosomal dominant disorder characterized by congenital developmental abnormalities involving structures of the heart. Common defects include tetralogy of Fallot, transposition of the great arteries, double-outlet right ventricle, total anomalous pulmonary venous return, pulmonary stenosis or atresia, atrioventricular canal, ventricular septal defect, and hypoplastic left or right ventricle. The disease is caused by variants affecting the gene represented in this entry. Tetralogy of Fallot (TOF) [MIM:187500] A congenital heart anomaly which consists of pulmonary stenosis, ventricular septal defect, dextroposition of the aorta (aorta is on the right side instead of the left) and hypertrophy of the right ventricle. In this condition, blood from both ventricles (oxygen-rich and oxygen-poor) is pumped into the body often causing cyanosis. The disease is caused by variants affecting the gene represented in this entry. Right atrial isomerism (RAI) [MIM:208530] A severe complex congenital heart defect resulting from embryonic disruption of proper left-right axis determination. RAI is usually characterized by complete atrioventricular septal defect with a common atrium and univentricular AV connection, total anomalous pulmonary drainage, and transposition or malposition of the great arteries. Affected individuals present at birth with severe cardiac failure. Other associated abnormalities include bilateral trilobed lungs, midline liver, and asplenia, as well as situs inversus affecting other organs. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. This protein is produced by a bicistronic gene which also produces the CERS1 protein from a non-overlapping reading frame.
Similarity. Belongs to the TGF-beta family.
RefSeq proteins (2): NP_001374367, NP_001483* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001839 | TGF-b_C | Domain |
| IPR015615 | TGF-beta-like | Family |
| IPR017948 | TGFb_CS | Conserved_site |
| IPR029034 | Cystine-knot_cytokine | Homologous_superfamily |
Pfam: PF00019
UniProt features (20 total): sequence variant 11, disulfide bond 4, signal peptide 1, propeptide 1, chain 1, region of interest 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P27539-F1 | 74.44 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (4): 267–337, 296–369, 300–371, 336
Glycosylation sites (1): 206
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-1181150 | Signaling by NODAL |
MSigDB gene sets: 133 (showing top):
GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOMF_GROWTH_FACTOR_ACTIVITY, GOBP_IN_UTERO_EMBRYONIC_DEVELOPMENT, GOBP_REGULATION_OF_TRANSMEMBRANE_RECEPTOR_PROTEIN_SERINE_THREONINE_KINASE_SIGNALING_PATHWAY, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_ENDODERM_DEVELOPMENT, GOBP_RESPONSE_TO_BMP, GOBP_RESPONSE_TO_GROWTH_FACTOR, GOMF_CYTOKINE_ACTIVITY, VDR_Q3, LEF1_Q6, GOBP_EMBRYO_DEVELOPMENT, GOBP_MESODERM_DEVELOPMENT, GOMF_SIGNALING_RECEPTOR_BINDING, RAAGNYNNCTTY_UNKNOWN
GO Biological Process (6): in utero embryonic development (GO:0001701), endoderm development (GO:0007492), mesoderm development (GO:0007498), BMP signaling pathway (GO:0030509), regulation of transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0090092), signal transduction (GO:0007165)
GO Molecular Function (2): cytokine activity (GO:0005125), growth factor activity (GO:0008083)
GO Cellular Component (2): obsolete extracellular space (GO:0005615), extracellular region (GO:0005576)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| tissue development | 2 |
| receptor ligand activity | 2 |
| chordate embryonic development | 1 |
| cellular response to BMP stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| cell surface receptor protein serine/threonine kinase signaling pathway | 1 |
| regulation of signal transduction | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1062 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GDF1 | CERS2 | Q96G23 | 934 |
| GDF1 | ACVR1C | Q8NER5 | 883 |
| GDF1 | CERS4 | Q9HA82 | 883 |
| GDF1 | CERS6 | Q6ZMG9 | 876 |
| GDF1 | CRIPTO | P13385 | 868 |
| GDF1 | CFC1 | P0CG37 | 861 |
| GDF1 | CERS5 | Q8N5B7 | 796 |
| GDF1 | CERS3 | Q8IU89 | 785 |
| GDF1 | ACVR2A | P27037 | 781 |
| GDF1 | MED13L | Q71F56 | 739 |
| GDF1 | SPTLC2 | O15270 | 720 |
| GDF1 | SPTLC1 | O15269 | 720 |
| GDF1 | SPTLC3 | Q9NUV7 | 720 |
| GDF1 | ACVR2B | Q13705 | 716 |
| GDF1 | NKX2-6 | A6NCS4 | 693 |
IntAct
2 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GDF1 | HTR4 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (2): GDF1 (Two-hybrid), GDF1 (Affinity Capture-MS)
ESM2 similar proteins: A0A061IR73, A6H687, A6NKF1, D3KCC4, E1BD59, G3MY25, G3MZC5, O00634, O75064, P0C5W1, P20863, P27539, P52824, P54777, Q002B5, Q08DM2, Q0VCE3, Q13608, Q17RN3, Q2TBW5, Q3U0S6, Q4VYA0, Q53EQ6, Q561R2, Q568Y2, Q5BK61, Q5JR98, Q5RE82, Q5U651, Q6F5E8, Q6NY19, Q6ZS72, Q8BH83, Q8C052, Q8CDY7, Q8VIM9, Q8WZA9, Q90343, Q90ZN1, Q92985
Diamond homologs: A1C2U3, A1C2U6, A1C2U7, A1C2V0, A1C2V5, A8E7N9, G5EEL5, O08689, O14793, O18828, O18830, O18831, O18836, O35312, O42220, O42221, O42222, O46576, O61643, O95390, O95393, P09534, P12644, P12645, P17491, P18075, P20722, P20863, P22003, P22004, P22444, P23359, P27091, P27539, P35621, P43026, P43027, P43028, P43029, P48970
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
48 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 22 |
| Likely benign | 20 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1453078 | NM_001492.6(GDF1):c.626G>A (p.Trp209Ter) | Pathogenic |
| 183023 | NM_021267.5(CERS1):c.549C>G (p.His183Gln) | Pathogenic |
SpliceAI
1535 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:18878928:A:AC | donor_gain | 1.0000 |
| 19:18878929:C:CC | donor_gain | 1.0000 |
| 19:18878929:CT:C | donor_gain | 1.0000 |
| 19:18878929:CTCGG:C | donor_gain | 1.0000 |
| 19:18879035:ATGTA:A | acceptor_gain | 1.0000 |
| 19:18879036:TGTA:T | acceptor_gain | 1.0000 |
| 19:18879038:TA:T | acceptor_gain | 1.0000 |
| 19:18879039:AC:A | acceptor_loss | 1.0000 |
| 19:18879039:ACT:A | acceptor_loss | 1.0000 |
| 19:18879040:C:CC | acceptor_gain | 1.0000 |
| 19:18879040:CTG:C | acceptor_loss | 1.0000 |
| 19:18879237:TCA:T | donor_loss | 1.0000 |
| 19:18879237:TCACC:T | donor_loss | 1.0000 |
| 19:18879238:CACCA:C | donor_loss | 1.0000 |
| 19:18879239:A:AC | donor_gain | 1.0000 |
| 19:18879239:ACCAG:A | donor_loss | 1.0000 |
| 19:18879240:C:CC | donor_gain | 1.0000 |
| 19:18879240:C:G | donor_loss | 1.0000 |
| 19:18879387:ACCTG:A | acceptor_loss | 1.0000 |
| 19:18880266:CCA:C | donor_gain | 1.0000 |
| 19:18880269:CTCA:C | donor_loss | 1.0000 |
| 19:18880270:TCAC:T | donor_loss | 1.0000 |
| 19:18880271:CA:C | donor_loss | 1.0000 |
| 19:18880272:A:AC | donor_gain | 1.0000 |
| 19:18880272:AC:A | donor_gain | 1.0000 |
| 19:18880273:C:CA | donor_gain | 1.0000 |
| 19:18880273:CC:C | donor_gain | 1.0000 |
| 19:18880273:CCAG:C | donor_gain | 1.0000 |
| 19:18880398:CG:C | acceptor_gain | 1.0000 |
| 19:18880433:TAC:T | acceptor_gain | 1.0000 |
AlphaMissense
2303 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:18868844:A:C | F291C | 0.999 |
| 19:18868873:C:A | W281C | 0.998 |
| 19:18868873:C:G | W281C | 0.998 |
| 19:18868889:A:C | F276C | 0.998 |
| 19:18868843:G:C | F291L | 0.997 |
| 19:18868843:G:T | F291L | 0.997 |
| 19:18868844:A:G | F291S | 0.997 |
| 19:18868845:A:G | F291L | 0.997 |
| 19:18868864:C:A | W284C | 0.997 |
| 19:18868864:C:G | W284C | 0.997 |
| 19:18868888:G:C | F276L | 0.996 |
| 19:18868888:G:T | F276L | 0.996 |
| 19:18868890:A:G | F276L | 0.996 |
| 19:18868889:A:G | F276S | 0.993 |
| 19:18868673:A:T | L348H | 0.991 |
| 19:18868643:A:G | L358P | 0.990 |
| 19:18868859:A:T | I286N | 0.990 |
| 19:18868890:A:T | F276I | 0.990 |
| 19:18868829:C:T | C296Y | 0.989 |
| 19:18868829:C:G | C296S | 0.988 |
| 19:18868830:A:T | C296S | 0.988 |
| 19:18868835:T:A | N294I | 0.988 |
| 19:18868624:C:A | M364I | 0.987 |
| 19:18868624:C:G | M364I | 0.987 |
| 19:18868624:C:T | M364I | 0.987 |
| 19:18868706:C:T | C337Y | 0.987 |
| 19:18868664:T:A | D351V | 0.986 |
| 19:18868669:G:C | F349L | 0.986 |
| 19:18868669:G:T | F349L | 0.986 |
| 19:18868671:A:G | F349L | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000062904 (19:18868605 A>AG), RS1000168129 (19:18880936 C>T), RS1000275000 (19:18885438 C>T), RS1000287033 (19:18897391 C>CCCGCCA), RS1000292527 (19:18877606 G>C,T), RS1000450783 (19:18897161 AC>A,ACC), RS1000542322 (19:18873265 T>C), RS1000573480 (19:18873010 C>G,T), RS1000606848 (19:18891486 C>G,T), RS1000660977 (19:18892680 C>G), RS1000663212 (19:18885795 G>A), RS1000744427 (19:18886617 C>T), RS1000770254 (19:18879177 G>A,T), RS1000815859 (19:18875900 G>A,C), RS1000843398 (19:18876186 A>G)
Disease associations
OMIM: gene MIM:602880 | disease phenotypes: MIM:616230, MIM:306955, MIM:613854
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| right atrial isomerism | Strong | Autosomal recessive |
| congenital heart defects, multiple types, 6 | Strong | Autosomal dominant |
| conotruncal heart malformations | Limited | Unknown |
Mondo (5): progressive myoclonic epilepsy type 8 (MONDO:0014545), visceral heterotaxy (MONDO:0018677), congenital heart defects, multiple types, 6 (MONDO:0013463), right atrial isomerism (MONDO:0008832), conotruncal heart malformations (MONDO:0016581)
Orphanet (4): Progressive myoclonic epilepsy type 8 (Orphanet:424027), Visceral heterotaxy (Orphanet:450), Congenitally uncorrected transposition of the great arteries (Orphanet:860), Situs ambiguus (Orphanet:157769)
HPO phenotypes
39 total (30 of 39 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000233 | Thin vermilion border |
| HP:0000268 | Dolichocephaly |
| HP:0000337 | Broad forehead |
| HP:0000520 | Proptosis |
| HP:0001156 | Brachydactyly |
| HP:0001274 | Agenesis of corpus callosum |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
| HP:0001636 | Tetralogy of Fallot |
| HP:0001642 | Pulmonic stenosis |
| HP:0001651 | Dextrocardia |
| HP:0001669 | Transposition of the great arteries |
| HP:0001674 | Complete atrioventricular canal defect |
| HP:0001680 | Coarctation of aorta |
| HP:0001684 | Secundum atrial septal defect |
| HP:0001696 | Situs inversus totalis |
| HP:0001719 | Double outlet right ventricle |
| HP:0001746 | Asplenia |
| HP:0001748 | Polysplenia |
| HP:0001750 | Single ventricle |
| HP:0002101 | Abnormal lung lobation |
| HP:0004209 | Clinodactyly of the 5th finger |
| HP:0004467 | Preauricular pit |
| HP:0004935 | Pulmonary artery atresia |
| HP:0005105 | Abnormal nasal morphology |
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, decreases reaction, affects reaction, affects binding | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Folic Acid | decreases expression, decreases reaction | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| picene | increases expression | 1 |
| Resveratrol | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetylcysteine | decreases expression, decreases reaction | 1 |
| Cisplatin | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Dust | decreases expression | 1 |
| Fluorouracil | affects reaction, decreases expression | 1 |
| Hydrogen Peroxide | decreases expression, decreases reaction | 1 |
| Lead | affects expression | 1 |
| Mustard Gas | affects expression, affects reaction | 1 |
| Nicotine | increases expression | 1 |
| Dronabinol | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| 2-Naphthylamine | increases expression | 1 |
| Permethrin | increases expression | 1 |
Clinical trials (associated diseases)
7 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04009863 | Not specified | COMPLETED | HIFU Ablation vs Fixed-dose RAI-131 Therapy in Moderate-sized Non-toxic MNG |
| NCT00004361 | Not specified | COMPLETED | Study of the Relationship Between Calcium Levels and Intact Parathyroid Hormone (iPTH) in Adults With Repaired or Palliated Conotruncal Cardiac Defects |
| NCT00005102 | Not specified | UNKNOWN | Immunologic Evaluation in Patients With DiGeorge Syndrome or Velocardiofacial Syndrome |
| NCT01460316 | Not specified | COMPLETED | Conotruncal Cardiac Defects and Nutrigenetic Etiopathogeny |
| NCT01591928 | Not specified | COMPLETED | Heterotaxy Syndrome and Intestinal Rotation Abnormalities - A Prospective Study |
| NCT01929967 | Not specified | COMPLETED | Defining Immunodeficiency in Heterotaxy Syndrome: Pilot Study Data |
| NCT02432079 | Not specified | RECRUITING | Molecular Genetics of Heterotaxy and Related Congenital Heart Defects |
Related Atlas pages
- Associated diseases: right atrial isomerism, congenital heart defects, multiple types, 6, conotruncal heart malformations
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital heart defects, multiple types, 6, conotruncal heart malformations, progressive myoclonic epilepsy type 8, right atrial isomerism, visceral heterotaxy