GDF10
gene geneOn this page
Also known as BMP-3b
Summary
GDF10 (growth differentiation factor 10, HGNC:4215) is a protein-coding gene on chromosome 10q11.22, encoding Growth/differentiation factor 10 (P55107). Growth factor involved in osteogenesis and adipogenesis.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer. This promotes neural repair after stroke. Additionally, this protein may act as a tumor suppressor and reduced expression of this gene is associated with oral cancer.
Source: NCBI Gene 2662 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 87 total — 1 pathogenic
- MANE Select transcript:
NM_004962
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4215 |
| Approved symbol | GDF10 |
| Name | growth differentiation factor 10 |
| Location | 10q11.22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | BMP-3b |
| Ensembl gene | ENSG00000266524 |
| Ensembl biotype | protein_coding |
| OMIM | 601361 |
| Entrez | 2662 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000580279, ENST00000895678
RefSeq mRNA: 1 — MANE Select: NM_004962
NM_004962
CCDS: CCDS73117
Canonical transcript exons
ENST00000580279 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002699841 | 47309796 | 47310721 |
| ENSE00002721632 | 47300197 | 47300970 |
| ENSE00002728838 | 47312601 | 47313577 |
Expression profiles
Bgee: expression breadth ubiquitous, 180 present calls, max score 84.48.
FANTOM5 (CAGE): breadth broad, TPM avg 2.5797 / max 287.0853, expressed in 389 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 104829 | 1.5994 | 341 |
| 104831 | 0.8278 | 223 |
| 104828 | 0.0670 | 29 |
| 104827 | 0.0484 | 22 |
| 104830 | 0.0372 | 22 |
Top tissues by expression
270 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.48 | gold quality |
| right lung | UBERON:0002167 | 82.40 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 80.38 | gold quality |
| tibial nerve | UBERON:0001323 | 79.55 | gold quality |
| tibia | UBERON:0000979 | 79.04 | gold quality |
| upper lobe of lung | UBERON:0008948 | 78.48 | gold quality |
| body of pancreas | UBERON:0001150 | 78.39 | gold quality |
| popliteal artery | UBERON:0002250 | 77.11 | gold quality |
| tibial artery | UBERON:0007610 | 77.10 | gold quality |
| lung | UBERON:0002048 | 76.77 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 76.41 | gold quality |
| lower esophagus | UBERON:0013473 | 76.27 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 75.81 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 75.57 | gold quality |
| aorta | UBERON:0000947 | 75.00 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 74.72 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 74.67 | gold quality |
| minor salivary gland | UBERON:0001830 | 74.08 | gold quality |
| calcaneal tendon | UBERON:0003701 | 74.04 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 73.73 | gold quality |
| skin of hip | UBERON:0001554 | 73.62 | gold quality |
| right coronary artery | UBERON:0001625 | 73.21 | gold quality |
| thyroid gland | UBERON:0002046 | 73.13 | gold quality |
| ascending aorta | UBERON:0001496 | 72.75 | gold quality |
| thoracic aorta | UBERON:0001515 | 72.68 | gold quality |
| tendon | UBERON:0000043 | 72.62 | gold quality |
| left coronary artery | UBERON:0001626 | 72.34 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 71.95 | silver quality |
| caudate nucleus | UBERON:0001873 | 71.61 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 71.27 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.08 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): RUNX2
miRNA regulators (miRDB)
64 targeting GDF10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-101-3P | 99.94 | 75.03 | 2230 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-139-5P | 99.80 | 69.50 | 1399 |
| HSA-MIR-498-5P | 99.76 | 69.64 | 1807 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
Literature-anchored findings (GeneRIF, showing 10)
- new hypoxia-inducible and SOX9-regulated genes, Gdf10 and Chm-I. In addition, Mig6 and InhbA were induced by hypoxia, predominantly via HIF-2alpha (PMID:18077449)
- BMP3b and BMP6 genes were suppressed by DNA methylation and methylation of BMP3b is significantly frequent in Japanese malignant pleural mesotheliomas (MPMs), suggesting its pathogenic role and the ethnic difference in MPMs. (PMID:18949431)
- Study shows that GDF10 is down-regulated in patients with oral squamous cell carcinoma, and is an independent risk factor for overall survival. Its expression is regulated by TGFBR3 which shares the signaling inhibiting epithelial-mesenchymal transition. (PMID:25728212)
- GDF10 is a stroke-induced signal for axonal sprouting and functional recovery. (PMID:26502261)
- acts as a tumor suppressor in mammary epithelial cells; limits proliferation and suppresses epithelial-mesenchymal transition (PMID:31147529)
- Mesenchymal Bmp3b expression maintains skeletal muscle integrity and decreases in age-related sarcopenia. (PMID:33170806)
- Cancer-associated fibroblasts promote tumor progression by lncRNA-mediated RUNX2/GDF10 signaling in oral squamous cell carcinoma. (PMID:33657265)
- GDF10 inhibits cell proliferation and epithelial-mesenchymal transition in nasopharyngeal carcinoma by the transforming growth factor-beta/Smad and NF-kappaB pathways. (PMID:34922336)
- Single-Cell Analysis Uncovers Osteoblast Factor Growth Differentiation Factor 10 as Mediator of Vascular Smooth Muscle Cell Phenotypic Modulation Associated with Plaque Rupture in Human Carotid Artery Disease. (PMID:35163719)
- Reduced plasma GDF10 levels are positively associated with cholesterol impairment and childhood obesity. (PMID:38245533)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gdf10b | ENSDARG00000073891 |
| danio_rerio | gdf10a | ENSDARG00000095378 |
| mus_musculus | Gdf10 | ENSMUSG00000021943 |
| rattus_norvegicus | Gdf10 | ENSRNOG00000051993 |
Paralogs (31): TGFB2 (ENSG00000092969), BMP7 (ENSG00000101144), TGFB1 (ENSG00000105329), BMP5 (ENSG00000112175), BMP8B (ENSG00000116985), TGFB3 (ENSG00000119699), INHBA (ENSG00000122641), INHA (ENSG00000123999), BMP4 (ENSG00000125378), BMP2 (ENSG00000125845), GDF5 (ENSG00000125965), GDF1 (ENSG00000130283), BMP15 (ENSG00000130385), GDF15 (ENSG00000130513), GDF11 (ENSG00000135414), MSTN (ENSG00000138379), INHBE (ENSG00000139269), LEFTY2 (ENSG00000143768), GDF7 (ENSG00000143869), BMP3 (ENSG00000152785), BMP6 (ENSG00000153162), GDF6 (ENSG00000156466), NODAL (ENSG00000156574), INHBB (ENSG00000163083), BMP10 (ENSG00000163217), GDF9 (ENSG00000164404), INHBC (ENSG00000175189), BMP8A (ENSG00000183682), GDF3 (ENSG00000184344), LEFTY1 (ENSG00000243709), GDF2 (ENSG00000263761)
Protein
Protein identifiers
Growth/differentiation factor 10 — P55107 (reviewed: P55107)
Alternative names: Bone morphogenetic protein 3B, Bone-inducing protein
All UniProt accessions (1): P55107
UniProt curated annotations — full annotation on UniProt →
Function. Growth factor involved in osteogenesis and adipogenesis. Plays an inhibitory role in the process of osteoblast differentiation via SMAD2/3 pathway. Plays an inhibitory role in the process of adipogenesis.
Subunit / interactions. Homodimer or heterodimer. Can form a non-covalent complex of the mature region and the pro-region.
Subcellular location. Secreted.
Tissue specificity. Expressed in femur, brain, lung, skeletal muscle, pancreas and testis.
Similarity. Belongs to the TGF-beta family.
RefSeq proteins (1): NP_004953* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001839 | TGF-b_C | Domain |
| IPR015615 | TGF-beta-like | Family |
| IPR017197 | BMP3/BMP3B | Family |
| IPR017948 | TGFb_CS | Conserved_site |
| IPR029034 | Cystine-knot_cytokine | Homologous_superfamily |
Pfam: PF00019
UniProt features (12 total): disulfide bond 4, glycosylation site 4, signal peptide 1, propeptide 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P55107-F1 | 67.70 | 0.35 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (4): 409–477, 442, 376–443, 405–475
Glycosylation sites (4): 118, 156, 281, 469
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 125 (showing top):
GOBP_HINDBRAIN_DEVELOPMENT, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_METENCEPHALON_DEVELOPMENT, STAEGE_EWING_FAMILY_TUMOR, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_RESPONSE_TO_ACID_CHEMICAL, GOBP_OSTEOBLAST_DIFFERENTIATION, MAHADEVAN_IMATINIB_RESISTANCE_DN, GOMF_GROWTH_FACTOR_ACTIVITY, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, GOBP_POSITIVE_REGULATION_OF_CELL_DIFFERENTIATION, GOBP_RESPONSE_TO_TRANSFORMING_GROWTH_FACTOR_BETA, DELYS_THYROID_CANCER_DN
GO Biological Process (13): skeletal system development (GO:0001501), osteoblast differentiation (GO:0001649), cell surface receptor protein serine/threonine kinase signaling pathway (GO:0007178), transforming growth factor beta receptor signaling pathway (GO:0007179), cerebellum development (GO:0021549), negative regulation of ossification (GO:0030279), ovulation cycle (GO:0042698), fat cell differentiation (GO:0045444), positive regulation of osteoblast differentiation (GO:0045669), response to kainic acid (GO:1904373), ossification (GO:0001503), regulation of ossification (GO:0030278), response to transforming growth factor beta (GO:0071559)
GO Molecular Function (3): cytokine activity (GO:0005125), growth factor activity (GO:0008083), protein serine/threonine kinase activator activity (GO:0043539)
GO Cellular Component (3): obsolete extracellular space (GO:0005615), extracellular matrix (GO:0031012), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| ossification | 3 |
| cell differentiation | 2 |
| receptor ligand activity | 2 |
| system development | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| cellular response to transforming growth factor beta stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| metencephalon development | 1 |
| anatomical structure development | 1 |
| regulation of ossification | 1 |
| negative regulation of multicellular organismal process | 1 |
| rhythmic process | 1 |
| multicellular organismal reproductive process | 1 |
| osteoblast differentiation | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of osteoblast differentiation | 1 |
| response to amino acid | 1 |
| response to nitrogen compound | 1 |
| response to oxygen-containing compound | 1 |
| multicellular organismal process | 1 |
| regulation of multicellular organismal process | 1 |
| response to growth factor | 1 |
| protein serine/threonine kinase activity | 1 |
| protein kinase activator activity | 1 |
| external encapsulating structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1376 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GDF10 | ACVR2A | P27037 | 661 |
| GDF10 | SMAD2 | Q15796 | 603 |
| GDF10 | ACVR1B | P36896 | 594 |
| GDF10 | BMPR1A | P36894 | 583 |
| GDF10 | ACVR1 | Q04771 | 563 |
| GDF10 | ACVR2B | Q13705 | 514 |
| GDF10 | NTN1 | O95631 | 505 |
| GDF10 | BMP5 | P22003 | 473 |
| GDF10 | BMP1 | P13497 | 469 |
| GDF10 | WNT4 | P56705 | 451 |
| GDF10 | FRMPD2 | Q68DX3 | 443 |
| GDF10 | MATN2 | O00339 | 423 |
| GDF10 | GPC3 | P51654 | 399 |
| GDF10 | RASGEF1A | Q8N9B8 | 396 |
| GDF10 | PAEP | P09466 | 396 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GDF10 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| IGHA1 | PLG | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| M | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (10): GDF10 (Synthetic Lethality), LRP4 (Affinity Capture-MS), MYCBP2 (Affinity Capture-MS), BANP (Affinity Capture-MS), ZNF507 (Affinity Capture-MS), MTHFR (Affinity Capture-MS), FBXO45 (Affinity Capture-MS), MYCBP2 (Affinity Capture-MS), ZNF507 (Affinity Capture-MS), LRP4 (Affinity Capture-MS)
ESM2 similar proteins: B2RZ42, D4A6L0, E1BBQ2, J3QPP8, O02695, O62827, P01346, P01356, P06307, P06881, P09535, P12755, P12843, P15473, P16611, P17936, P20959, P22444, P22692, P24854, P47878, P49002, P49192, P49705, P53366, P55107, P55108, P56388, P80560, P97737, Q05716, Q08DX6, Q16568, Q26492, Q4RU86, Q58CS8, Q5T848, Q63475, Q68RJ9, Q6DVA0
Diamond homologs: A1C2U3, A1C2U6, A1C2U7, A1C2V0, A1C2V5, A8E7N9, G5EEL5, O08689, O14793, O18828, O18830, O18831, O18836, O35312, O42220, O42221, O42222, O46576, O61643, O95390, O95393, P09534, P12644, P12645, P17491, P18075, P20722, P20863, P22003, P22004, P22444, P23359, P27091, P27539, P35621, P43026, P43027, P43028, P43029, P48970
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
87 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 80 |
| Likely benign | 1 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1072695 | NC_000010.10:g.(?48370533)(48438710_?)del | Pathogenic |
SpliceAI
423 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:47312598:C:CC | acceptor_gain | 1.0000 |
| 10:47312598:CTGC:C | acceptor_loss | 1.0000 |
| 10:47312599:TCTG:T | acceptor_loss | 1.0000 |
| 10:47312600:AT:A | acceptor_gain | 1.0000 |
| 10:47312601:GAT:G | acceptor_gain | 1.0000 |
| 10:47312602:CGAT:C | acceptor_gain | 1.0000 |
| 10:47312602:CGATC:C | acceptor_gain | 1.0000 |
| 10:47312603:ACGAT:A | acceptor_gain | 1.0000 |
| 10:47300902:T:TA | donor_gain | 0.9900 |
| 10:47300969:C:CA | donor_loss | 0.9900 |
| 10:47300969:C:CC | donor_gain | 0.9900 |
| 10:47300969:CC:C | donor_gain | 0.9900 |
| 10:47300969:CCCAG:C | donor_gain | 0.9900 |
| 10:47300970:A:AC | donor_gain | 0.9900 |
| 10:47300970:AC:A | donor_gain | 0.9900 |
| 10:47300971:TA:T | donor_loss | 0.9900 |
| 10:47300972:TTA:T | donor_loss | 0.9900 |
| 10:47300973:CTTA:C | donor_loss | 0.9900 |
| 10:47300974:ACTTA:A | donor_loss | 0.9900 |
| 10:47300975:TACTT:T | donor_loss | 0.9900 |
| 10:47300976:CTACT:C | donor_loss | 0.9900 |
| 10:47309793:C:CC | acceptor_gain | 0.9900 |
| 10:47309796:CTT:C | acceptor_gain | 0.9900 |
| 10:47309798:CACTT:C | acceptor_gain | 0.9900 |
| 10:47310700:C:CC | donor_gain | 0.9900 |
| 10:47310700:CATG:C | donor_gain | 0.9900 |
| 10:47310701:A:AC | donor_gain | 0.9900 |
| 10:47312589:A:T | acceptor_gain | 0.9900 |
| 10:47312590:C:CT | acceptor_gain | 0.9900 |
| 10:47312597:T:C | acceptor_loss | 0.9900 |
AlphaMissense
3088 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:47310646:G:C | W390C | 0.999 |
| 10:47310646:G:T | W390C | 0.999 |
| 10:47310689:T:A | C405S | 0.999 |
| 10:47310690:G:A | C405Y | 0.999 |
| 10:47310690:G:C | C405S | 0.999 |
| 10:47310691:C:G | C405W | 0.999 |
| 10:47310701:T:C | C409R | 0.999 |
| 10:47310702:G:A | C409Y | 0.999 |
| 10:47310703:T:G | C409W | 0.999 |
| 10:47310707:T:C | F411L | 0.999 |
| 10:47310708:T:G | F411C | 0.999 |
| 10:47310709:C:A | F411L | 0.999 |
| 10:47310709:C:G | F411L | 0.999 |
| 10:47312629:T:A | I425N | 0.999 |
| 10:47312682:T:A | C443S | 0.999 |
| 10:47312682:T:C | C443R | 0.999 |
| 10:47312683:G:A | C443Y | 0.999 |
| 10:47312683:G:C | C443S | 0.999 |
| 10:47312684:T:G | C443W | 0.999 |
| 10:47310602:T:A | C376S | 0.998 |
| 10:47310602:T:C | C376R | 0.998 |
| 10:47310603:G:A | C376Y | 0.998 |
| 10:47310603:G:C | C376S | 0.998 |
| 10:47310604:C:G | C376W | 0.998 |
| 10:47310630:T:G | F385C | 0.998 |
| 10:47310644:T:A | W390R | 0.998 |
| 10:47310644:T:C | W390R | 0.998 |
| 10:47310655:G:C | W393C | 0.998 |
| 10:47310655:G:T | W393C | 0.998 |
| 10:47310689:T:C | C405R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000089486 (10:47305289 G>A), RS1000095104 (10:47311918 G>A,C,T), RS1000479269 (10:47310074 C>G), RS1000930983 (10:47298563 G>T), RS1000993495 (10:47304327 G>A,C,T), RS1001285980 (10:47298748 C>G,T), RS1001497488 (10:47304106 G>A), RS1001549648 (10:47310317 A>C,G), RS1002046582 (10:47302793 A>G), RS1002149628 (10:47309164 T>C), RS1002656156 (10:47313165 G>A), RS1002999324 (10:47301562 C>T), RS1003067464 (10:47301277 A>T), RS1003558232 (10:47307738 G>A), RS1003658206 (10:47312147 C>T)
Disease associations
OMIM: gene MIM:601361 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004639_14 | Prudent dietary pattern | 3.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008111 | diet measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression | 4 |
| trichostatin A | increases expression | 2 |
| Tretinoin | increases expression | 2 |
| bisphenol A | affects expression | 1 |
| testosterone undecanoate | affects cotreatment, decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Decitabine | increases expression | 1 |
| Panobinostat | affects cotreatment, increases expression | 1 |
| Arsenic | affects expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Dexamethasone | decreases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Nickel | decreases expression | 1 |
| Phenylmercuric Acetate | increases expression, affects cotreatment | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tetradecanoylphorbol Acetate | affects cotreatment, affects expression | 1 |
| Triclosan | decreases expression | 1 |
| Zinc | affects cotreatment, affects expression | 1 |
| 8-Bromo Cyclic Adenosine Monophosphate | increases expression | 1 |
| Levonorgestrel | affects cotreatment, decreases expression | 1 |
| Medroxyprogesterone Acetate | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Genistein | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.