GFUS
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Also known as FXP35BSDR4E1
Summary
GFUS (GDP-L-fucose synthase, HGNC:12390) is a protein-coding gene on chromosome 8q24.3, encoding GDP-L-fucose synthase (Q13630). Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
Tissue specific transplantation antigen P35B is a NADP(H)-binding protein. It catalyze the two-step epimerase and the reductase reactions in GDP-D-mannose metabolism, converting GDP-4-keto-6-D-deoxymannose to GDP-L-fucose. GDP-L-fucose is the substrate of several fucosyltransferases involved in the expression of many glycoconjugates, including blood group ABH antigens and developmental adhesion antigens. Mutations in this gene may cause leukocyte adhesion deficiency, type II.
Source: NCBI Gene 7264 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital disorder of glycosylation (Limited, ClinGen)
- GWAS associations: 2
- Clinical variants (ClinVar): 103 total
- MANE Select transcript:
NM_003313
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12390 |
| Approved symbol | GFUS |
| Name | GDP-L-fucose synthase |
| Location | 8q24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FX, P35B, SDR4E1 |
| Ensembl gene | ENSG00000104522 |
| Ensembl biotype | protein_coding |
| OMIM | 137020 |
| Entrez | 7264 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 20 protein_coding, 8 retained_intron, 1 nonsense_mediated_decay
ENST00000425753, ENST00000524719, ENST00000525274, ENST00000526290, ENST00000527006, ENST00000527549, ENST00000527677, ENST00000528920, ENST00000529048, ENST00000529064, ENST00000529899, ENST00000530474, ENST00000531006, ENST00000531473, ENST00000532308, ENST00000533817, ENST00000883221, ENST00000883222, ENST00000883223, ENST00000883224, ENST00000917985, ENST00000917986, ENST00000917987, ENST00000917988, ENST00000917989, ENST00000917990, ENST00000917991, ENST00000956274, ENST00000956275
RefSeq mRNA: 9 — MANE Select: NM_003313
NM_001317783, NM_001413407, NM_001413408, NM_001413409, NM_001413410, NM_001413411, NM_001413412, NM_001413413, NM_003313
CCDS: CCDS6408
Canonical transcript exons
ENST00000425753 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000876562 | 143614320 | 143614453 |
| ENSE00002165840 | 143617474 | 143617549 |
| ENSE00003465757 | 143612618 | 143612965 |
| ENSE00003552373 | 143614787 | 143614915 |
| ENSE00003603815 | 143613196 | 143613295 |
| ENSE00003606257 | 143616567 | 143616723 |
| ENSE00003630288 | 143614624 | 143614697 |
| ENSE00003668335 | 143613524 | 143613603 |
| ENSE00003670624 | 143614164 | 143614228 |
| ENSE00003685930 | 143613751 | 143613817 |
| ENSE00003691195 | 143616106 | 143616220 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 97.40.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.5444 / max 280.8421, expressed in 1818 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 95513 | 26.0174 | 1817 |
| 95512 | 2.3512 | 1094 |
| 95508 | 0.0639 | 13 |
| 95514 | 0.0584 | 24 |
| 95507 | 0.0348 | 7 |
| 95511 | 0.0102 | 4 |
| 95510 | 0.0052 | 2 |
| 95509 | 0.0032 | 2 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| body of stomach | UBERON:0001161 | 97.40 | gold quality |
| skin of abdomen | UBERON:0001416 | 97.31 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.20 | gold quality |
| zone of skin | UBERON:0000014 | 97.06 | gold quality |
| duodenum | UBERON:0002114 | 97.00 | gold quality |
| skin of leg | UBERON:0001511 | 96.91 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 96.84 | gold quality |
| minor salivary gland | UBERON:0001830 | 96.80 | gold quality |
| body of pancreas | UBERON:0001150 | 96.67 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.65 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 96.54 | gold quality |
| fundus of stomach | UBERON:0001160 | 96.36 | gold quality |
| stomach | UBERON:0000945 | 96.17 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.86 | gold quality |
| right lobe of liver | UBERON:0001114 | 95.83 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 95.76 | gold quality |
| blood | UBERON:0000178 | 95.58 | gold quality |
| left testis | UBERON:0004533 | 95.55 | gold quality |
| pituitary gland | UBERON:0000007 | 95.54 | gold quality |
| transverse colon | UBERON:0001157 | 95.54 | gold quality |
| right testis | UBERON:0004534 | 95.49 | gold quality |
| adenohypophysis | UBERON:0002196 | 95.29 | gold quality |
| small intestine | UBERON:0002108 | 95.28 | gold quality |
| prostate gland | UBERON:0002367 | 95.24 | gold quality |
| esophagus | UBERON:0001043 | 95.23 | gold quality |
| testis | UBERON:0000473 | 95.18 | gold quality |
| granulocyte | CL:0000094 | 94.93 | gold quality |
| rectum | UBERON:0001052 | 94.62 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 94.37 | gold quality |
| gall bladder | UBERON:0002110 | 94.19 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 53.74 |
| E-GEOD-125970 | yes | 19.45 |
| E-ANND-3 | yes | 7.78 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
17 targeting GFUS, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-4325 | 99.49 | 72.20 | 1342 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-4763-3P | 99.10 | 67.83 | 2649 |
| HSA-MIR-4751 | 98.80 | 64.95 | 525 |
| HSA-MIR-296-5P | 97.61 | 64.02 | 851 |
| HSA-MIR-10398-5P | 97.12 | 64.94 | 1051 |
| HSA-MIR-939-5P | 97.10 | 65.80 | 1579 |
| HSA-MIR-1343-5P | 96.48 | 66.06 | 1506 |
Literature-anchored findings (GeneRIF, showing 7)
- Tissue-specific transplantation antigen P35B (TSTA3) immune response-mediated metabolism coupling cell cycle to postreplication repair network in no-tumor hepatitis/cirrhotic tissues (HBV or HCV (PMID:22528125)
- Data indicate that the structure of GDP-l-fucose synthase (FX) reveals the key catalytic residues. (PMID:23774504)
- The findings suggest that miR-125a-5p/miR-125b suppress the expression of TSTA3, which controls cell proliferation and invasion by regulating CXCR4 expression. In conclusion, a high expression of TSTA3 exerts a proto-oncogenic effect during carcinogenesis and serves as an independent molecular marker for breast cancerpatients. (PMID:26531722)
- tissue-specific transplantation antigen P35B may serve as a novel biomarker for prognosis of patients with esophageal squamous cell carcinoma. (PMID:29950151)
- TSTA3 facilitates esophageal squamous cell carcinoma progression through regulating fucosylation of LAMP2 and ERBB2. (PMID:33042286)
- [TSTA3 gene promotes esophageal cancer invasion through MAPK-ERK pathway and downstream MMP2/9]. (PMID:34979755)
- FUCA2 and TSTA3 expression in gastric cancer: candidate biomarkers of malignant transformation. (PMID:36583336)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gfus.1 | ENSDARG00000039666 |
| danio_rerio | gfus.2 | ENSDARG00000039669 |
| danio_rerio | gfus.3 | ENSDARG00000042661 |
| mus_musculus | Gfus | ENSMUSG00000022570 |
| rattus_norvegicus | Gfus | ENSRNOG00000009020 |
| drosophila_melanogaster | Gmer | FBGN0267823 |
| caenorhabditis_elegans | WBGENE00019813 |
Paralogs (10): TGDS (ENSG00000088451), HSD3B7 (ENSG00000099377), GMDS (ENSG00000112699), UXS1 (ENSG00000115652), GALE (ENSG00000117308), NSDHL (ENSG00000147383), SDR42E2 (ENSG00000183921), SDR42E1 (ENSG00000184860), HSD3B1 (ENSG00000203857), HSD3B2 (ENSG00000203859)
Protein
Protein identifiers
GDP-L-fucose synthase — Q13630 (reviewed: Q13630)
Alternative names: GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase, Protein FX, Red cell NADP(H)-binding protein, Short-chain dehydrogenase/reductase family 4E member 1
All UniProt accessions (8): Q13630, A0A140VKC8, E9PKL9, E9PLH9, E9PP14, E9PP60, H0YCP7, H0YE90
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
Subunit / interactions. Homodimer.
Pathway. Nucleotide-sugar biosynthesis; GDP-L-fucose biosynthesis via de novo pathway; GDP-L-fucose from GDP-alpha-D-mannose: step 2/2.
Similarity. Belongs to the NAD(P)-dependent epimerase/dehydratase family. Fucose synthase subfamily.
RefSeq proteins (9): NP_001304712, NP_001400336, NP_001400337, NP_001400338, NP_001400339, NP_001400340, NP_001400341, NP_001400342, NP_003304* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001509 | Epimerase_deHydtase | Domain |
| IPR028614 | GDP_fucose/colitose_synth | Family |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
Pfam: PF01370
Catalyzed reactions (Rhea), 1 shown:
- GDP-beta-L-fucose + NADP(+) = GDP-4-dehydro-alpha-D-rhamnose + NADPH + H(+) (RHEA:18885)
UniProt features (47 total): strand 16, helix 12, binding site 8, turn 5, site 3, chain 1, active site 1, sequence conflict 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4E5Y | X-RAY DIFFRACTION | 2.37 |
| 4BL5 | X-RAY DIFFRACTION | 2.6 |
| 4BKP | X-RAY DIFFRACTION | 2.7 |
| 4B8W | X-RAY DIFFRACTION | 2.75 |
| 4B8Z | X-RAY DIFFRACTION | 2.75 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13630-F1 | 95.96 | 0.91 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (4): 143 (proton donor/acceptor); 114 (important for catalytic activity); 116 (important for catalytic activity); 147 (lowers pka of active site tyr)
Ligand- & substrate-binding residues (8): 14–20; 147; 170–173; 186; 194; 208; 215; 277
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6787639 | GDP-fucose biosynthesis |
MSigDB gene sets: 199 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, SWEET_KRAS_ONCOGENIC_SIGNATURE, GOBP_LEUKOCYTE_MEDIATED_CYTOTOXICITY, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_LEUKOCYTE_MEDIATED_IMMUNITY, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_CELL_ADHESION, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_ENDOTHELIAL_CELL_MIGRATION, TERAMOTO_OPN_TARGETS_CLUSTER_6, GOBP_CELL_CELL_ADHESION, GOBP_POSITIVE_REGULATION_OF_CELL_MATRIX_ADHESION, ONKEN_UVEAL_MELANOMA_UP
GO Biological Process (7): T cell mediated cytotoxicity (GO:0001913), leukocyte cell-cell adhesion (GO:0007159), positive regulation of endothelial cell migration (GO:0010595), GDP-mannose metabolic process (GO:0019673), ‘de novo’ GDP-L-fucose biosynthetic process (GO:0042351), positive regulation of endothelial cell-matrix adhesion (GO:1904906), nucleotide-sugar biosynthetic process (GO:0009226)
GO Molecular Function (9): electron transfer activity (GO:0009055), GDP-4-dehydro-D-rhamnose reductase activity (GO:0042356), identical protein binding (GO:0042802), GDP-mannose 3,5-epimerase activity (GO:0047918), GDP-L-fucose synthase activity (GO:0050577), catalytic activity (GO:0003824), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), isomerase activity (GO:0016853)
GO Cellular Component (2): cytosol (GO:0005829), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Synthesis of substrates in N-glycan biosythesis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nucleotide-sugar metabolic process | 2 |
| GDP-L-fucose biosynthetic process | 2 |
| molecular_function | 2 |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 2 |
| catalytic activity | 2 |
| leukocyte mediated cytotoxicity | 1 |
| T cell mediated immunity | 1 |
| cell-cell adhesion | 1 |
| regulation of endothelial cell migration | 1 |
| positive regulation of cell migration | 1 |
| endothelial cell migration | 1 |
| GDP-mannose metabolic process | 1 |
| positive regulation of cell-matrix adhesion | 1 |
| endothelial cell-matrix adhesion | 1 |
| regulation of endothelial cell-matrix adhesion | 1 |
| carbohydrate derivative biosynthetic process | 1 |
| nucleoside phosphate biosynthetic process | 1 |
| protein binding | 1 |
| racemase and epimerase activity, acting on carbohydrates and derivatives | 1 |
| binding | 1 |
| cytoplasm | 1 |
| cellular anatomical structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
3119 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GFUS | GMDS | O60547 | 771 |
| GFUS | FCSK | Q8N0W3 | 745 |
| GFUS | FPGT | O14772 | 672 |
| GFUS | FUT8 | Q9BYC5 | 613 |
| GFUS | SLC35C1 | Q96A29 | 604 |
| GFUS | GALE | Q14376 | 564 |
| GFUS | GNPNAT1 | Q96EK6 | 491 |
| GFUS | MPI | P34949 | 478 |
| GFUS | RPEL1 | Q2QD12 | 478 |
| GFUS | POFUT1 | Q9H488 | 477 |
| GFUS | VSIG2 | Q96IQ7 | 437 |
| GFUS | A0A140T9Z0 | A0A140T9Z0 | 436 |
| GFUS | UGDH | O60701 | 428 |
| GFUS | POFUT2 | Q9Y2G5 | 427 |
| GFUS | CD4 | P01730 | 416 |
IntAct
24 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GFUS | GFUS | psi-mi:“MI:0915”(physical association) | 0.680 |
| GFUS | GFUS | psi-mi:“MI:0407”(direct interaction) | 0.680 |
| GFUS | CLVS2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TBC1D22B | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| GFUS | PCBP3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GFUS | KLHL15 | psi-mi:“MI:0915”(physical association) | 0.400 |
| AGPS | psi-mi:“MI:0915”(physical association) | 0.400 | |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| GFUS | ID2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RIOK2 | GFUS | psi-mi:“MI:0915”(physical association) | 0.370 |
| KEAP1 | ASNS | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | psi-mi:“MI:0914”(association) | 0.350 | |
| STX17 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| OR2A4 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| GOT1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP2R2B | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| GFUS | GFUS | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (56): PCBP3 (Affinity Capture-MS), ARFIP1 (Co-fractionation), G6PD (Co-fractionation), GALE (Co-fractionation), HNRNPH1 (Co-fractionation), KDM3A (Co-fractionation), NTMT1 (Co-fractionation), RABIF (Co-fractionation), SEC31A (Co-fractionation), TSTA3 (Co-fractionation), TSTA3 (Co-fractionation), TSTA3 (Co-fractionation), TSTA3 (Co-fractionation), TSTA3 (Co-fractionation), TSTA3 (Co-fractionation)
ESM2 similar proteins: A0PJE2, A4FUZ6, A6QP05, D2WKD9, F1QWW8, O49213, O66148, O75884, O88736, O88851, P13653, P15904, P23591, P30043, P52556, P56658, P56937, Q06136, Q0IH28, Q0VCN1, Q0VFE7, Q13630, Q2KIJ5, Q3T0R4, Q41578, Q42850, Q566S6, Q59987, Q5R6U1, Q5RBE5, Q5RJY4, Q5ZID0, Q62904, Q66KC4, Q67WR2, Q6GV12, Q6IAN0, Q6P5L8, Q6PAY8, Q7XKF3
Diamond homologs: G5EER4, O49213, P23591, P32055, P55353, Q13630, Q55C77, Q5RBE5, Q8K3X2, Q9LMU0, Q9W1X8, G4WJD3, P33217, Q67WR2, Q67WR5, A6QLW2, Q8VDR7, Q9L9E8, Q8H0B6, Q8S8T4, Q9LZI2, Q9JRN7
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
103 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 64 |
| Likely benign | 3 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1780 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:143613531:T:TA | donor_gain | 1.0000 |
| 8:143613532:C:A | donor_gain | 1.0000 |
| 8:143613600:CCCA:C | acceptor_gain | 1.0000 |
| 8:143613601:CCA:C | acceptor_gain | 1.0000 |
| 8:143613601:CCAC:C | acceptor_gain | 1.0000 |
| 8:143613602:CAC:C | acceptor_gain | 1.0000 |
| 8:143613604:C:CC | acceptor_gain | 1.0000 |
| 8:143613746:CCCA:C | donor_loss | 1.0000 |
| 8:143613747:CCACC:C | donor_loss | 1.0000 |
| 8:143613749:A:AC | donor_gain | 1.0000 |
| 8:143613749:ACCGG:A | donor_loss | 1.0000 |
| 8:143613750:C:CA | donor_loss | 1.0000 |
| 8:143613750:C:CC | donor_gain | 1.0000 |
| 8:143614152:T:TA | donor_gain | 1.0000 |
| 8:143614315:CTCA:C | donor_gain | 1.0000 |
| 8:143614318:A:AC | donor_gain | 1.0000 |
| 8:143614319:C:CT | donor_gain | 1.0000 |
| 8:143614319:CT:C | donor_gain | 1.0000 |
| 8:143614452:CC:C | acceptor_gain | 1.0000 |
| 8:143614453:CC:C | acceptor_gain | 1.0000 |
| 8:143614582:C:CA | donor_gain | 1.0000 |
| 8:143614781:CCTCA:C | donor_loss | 1.0000 |
| 8:143614782:CTCA:C | donor_loss | 1.0000 |
| 8:143614783:TCA:T | donor_loss | 1.0000 |
| 8:143614784:CAC:C | donor_loss | 1.0000 |
| 8:143614785:A:AG | donor_loss | 1.0000 |
| 8:143614797:T:C | donor_gain | 1.0000 |
| 8:143614911:TTCCT:T | acceptor_gain | 1.0000 |
| 8:143614912:TCCT:T | acceptor_gain | 1.0000 |
| 8:143614913:CCTC:C | acceptor_gain | 1.0000 |
AlphaMissense
2130 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:143614402:G:C | N172K | 0.998 |
| 8:143614402:G:T | N172K | 0.998 |
| 8:143614647:C:A | K147N | 0.998 |
| 8:143614647:C:G | K147N | 0.998 |
| 8:143614668:A:C | N140K | 0.998 |
| 8:143614668:A:T | N140K | 0.998 |
| 8:143614182:C:A | R215S | 0.997 |
| 8:143614182:C:G | R215S | 0.997 |
| 8:143614183:C:A | R215M | 0.997 |
| 8:143614183:C:G | R215T | 0.997 |
| 8:143614657:G:C | S144W | 0.997 |
| 8:143614661:A:G | Y143H | 0.997 |
| 8:143614829:A:C | C116W | 0.997 |
| 8:143614823:G:C | F118L | 0.996 |
| 8:143614823:G:T | F118L | 0.996 |
| 8:143614825:A:G | F118L | 0.996 |
| 8:143614830:C:T | C116Y | 0.996 |
| 8:143614362:G:C | H186D | 0.995 |
| 8:143614394:C:T | G175E | 0.995 |
| 8:143614644:C:A | R148S | 0.995 |
| 8:143614644:C:G | R148S | 0.995 |
| 8:143614836:G:A | S114F | 0.995 |
| 8:143614836:G:T | S114Y | 0.995 |
| 8:143614907:G:C | N90K | 0.995 |
| 8:143614907:G:T | N90K | 0.995 |
| 8:143613260:C:A | K282N | 0.994 |
| 8:143613260:C:G | K282N | 0.994 |
| 8:143614176:G:C | F217L | 0.994 |
| 8:143614176:G:T | F217L | 0.994 |
| 8:143614178:A:G | F217L | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000195461 (8:143615782 C>G), RS1000358430 (8:143612194 A>C), RS1000987962 (8:143633220 T>C), RS1001210038 (8:143617278 G>A,T), RS1001310924 (8:143612992 T>C), RS1001565792 (8:143615420 G>A,C,T), RS1001571277 (8:143618106 T>G), RS1001602061 (8:143617064 C>G,T), RS1003955582 (8:143618192 C>T), RS1004148484 (8:143618157 C>A,T), RS1004323741 (8:143615411 C>A), RS1004661059 (8:143614602 T>A,G), RS1005375863 (8:143614962 C>T), RS1005388425 (8:143616972 C>A), RS1005783392 (8:143616758 A>G,T)
Disease associations
OMIM: gene MIM:137020 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital disorder of glycosylation | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital disorder of glycosylation | Limited | AR |
Mondo (1): congenital disorder of glycosylation (MONDO:0015286)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001966_2 | Rhegmatogenous retinal detachment | 3.000000e-06 |
| GCST012020_18 | Serum metabolite levels | 1.000000e-55 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018981 | Congenital Disorders of Glycosylation | C16.320.565.202.125; C18.452.648.202.125 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases methylation, affects cotreatment, increases expression | 5 |
| sodium arsenite | decreases expression, increases abundance | 2 |
| cobaltous chloride | decreases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, increases expression | 2 |
| Smoke | increases expression, decreases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| fenpyroximate | increases expression | 1 |
| pyrimidifen | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| 14-deoxy-11,12-didehydroandrographolide | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| picoxystrobin | increases expression | 1 |
| MT19c compound | decreases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
Clinical trials (associated diseases)
9 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07572825 | PHASE1 | NOT_YET_RECRUITING | Assessing the Safety and Tolerability of NMN in DHDDS-CDG |
| NCT02089789 | Not specified | RECRUITING | Clinical and Basic Investigations Into Known and Suspected Congenital Disorders of Glycosylation |
| NCT02503267 | Not specified | UNKNOWN | Incidence and Consequences of Disorders of Glycosylation in Patients With Conotruncal and Septal Heart Defects |
| NCT02955264 | Not specified | COMPLETED | Using D-Galactose as a Food Supplement in Congenital Disorders of Glycosylation |
| NCT03250728 | Not specified | COMPLETED | Role of the Endothelium in Stroke-like Episode Among CDG Patients |
| NCT03560570 | Not specified | COMPLETED | Study of Hemostasis in Patients With Congenital Disorder of Glycosylation |
| NCT04198987 | Not specified | COMPLETED | Dietary Monosaccharide Supplementation in Patients With Congenital Disorders of Glycosylation |
| NCT04199000 | Not specified | RECRUITING | Clinical and Basic Investigations Into Congenital Disorders of Glycosylation |
| NCT04201067 | Not specified | COMPLETED | Large-Scale Metabolomic Profiling for the Diagnosis of Inborn Errors of Metabolism |
Related Atlas pages
- Associated diseases: congenital disorder of glycosylation
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital disorder of glycosylation, rhegmatogenous retinal detachment