GHRH
gene geneOn this page
Summary
GHRH (growth hormone releasing hormone, HGNC:4265) is a protein-coding gene on chromosome 20q11.23, encoding Somatoliberin (P01286). GRF is released by the hypothalamus and acts on the adenohypophyse to stimulate the secretion of growth hormone.
This gene encodes a member of the glucagon family of proteins. The encoded preproprotein is produced in the hypothalamus and cleaved to generate the mature factor, known as somatoliberin, which acts to stimulate growth hormone release from the pituitary gland. Variant receptors for somatoliberin have been found in several types of tumors, and antagonists of these receptors can inhibit the growth of the tumors. Defects in this gene are a cause of dwarfism, while hypersecretion of the encoded protein is a cause of gigantism. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed.
Source: NCBI Gene 2691 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 17 total
- MANE Select transcript:
NM_021081
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4265 |
| Approved symbol | GHRH |
| Name | growth hormone releasing hormone |
| Location | 20q11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000118702 |
| Ensembl biotype | protein_coding |
| OMIM | 139190 |
| Entrez | 2691 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000237527, ENST00000373614, ENST00000903920, ENST00000964612
RefSeq mRNA: 2 — MANE Select: NM_021081
NM_001184731, NM_021081
CCDS: CCDS13292, CCDS54460
Canonical transcript exons
ENST00000373614 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000800497 | 37254210 | 37254329 |
| ENSE00000800498 | 37256394 | 37256498 |
| ENSE00001271727 | 37251086 | 37251231 |
| ENSE00001461030 | 37256807 | 37256908 |
| ENSE00001461031 | 37261743 | 37261814 |
Expression profiles
Bgee: expression breadth broad, 84 present calls, max score 89.61.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0138 / max 3.9484, expressed in 6 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 187174 | 0.0138 | 6 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.61 | gold quality |
| right atrium auricular region | UBERON:0006631 | 76.56 | gold quality |
| cardiac atrium | UBERON:0002081 | 74.60 | gold quality |
| pancreatic ductal cell | CL:0002079 | 67.63 | silver quality |
| duodenum | UBERON:0002114 | 63.09 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 62.90 | gold quality |
| hypothalamus | UBERON:0001898 | 61.72 | gold quality |
| endometrium epithelium | UBERON:0004811 | 61.52 | gold quality |
| apex of heart | UBERON:0002098 | 60.90 | gold quality |
| gluteal muscle | UBERON:0002000 | 60.58 | gold quality |
| triceps brachii | UBERON:0001509 | 60.51 | gold quality |
| granulocyte | CL:0000094 | 58.70 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 58.52 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 57.74 | gold quality |
| jejunal mucosa | UBERON:0000399 | 57.49 | gold quality |
| heart right ventricle | UBERON:0002080 | 57.12 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 57.02 | gold quality |
| cartilage tissue | UBERON:0002418 | 56.98 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 56.75 | gold quality |
| parotid gland | UBERON:0001831 | 56.52 | gold quality |
| buccal mucosa cell | CL:0002336 | 56.44 | gold quality |
| diaphragm | UBERON:0001103 | 56.31 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 56.10 | gold quality |
| postcentral gyrus | UBERON:0002581 | 55.85 | gold quality |
| quadriceps femoris | UBERON:0001377 | 55.60 | gold quality |
| vastus lateralis | UBERON:0001379 | 55.16 | gold quality |
| ileal mucosa | UBERON:0000331 | 55.06 | silver quality |
| sperm | CL:0000019 | 54.50 | gold quality |
| male germ cell | CL:0000015 | 54.41 | gold quality |
| entorhinal cortex | UBERON:0002728 | 54.20 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.46 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, CREB1, GSX1, HOXB7, IKZF1, NFATC2, NFATC3
miRNA regulators (miRDB)
11 targeting GHRH, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-10393-3P | 99.72 | 66.56 | 961 |
| HSA-MIR-6801-5P | 99.72 | 66.50 | 981 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-625-5P | 99.02 | 68.64 | 2031 |
| HSA-MIR-5701 | 98.97 | 69.54 | 1502 |
| HSA-MIR-10395-3P | 98.10 | 66.70 | 1726 |
| HSA-MIR-4665-5P | 97.91 | 67.69 | 1536 |
| HSA-MIR-582-3P | 96.69 | 67.38 | 1019 |
| HSA-MIR-3675-5P | 95.90 | 65.80 | 474 |
Literature-anchored findings (GeneRIF, showing 40)
- human GHRH is expressed in experimental prostate neoplasms in mice; this could explain the effects of GHRH antagonists on growth of prostate cancer (PMID:12126741)
- expression in gastroenteropancreatic carcinomas (PMID:12186980)
- expressed in a subset of endometrial tumors, of the endometrioid type in particular; A paracrine/autocrine role for GHRH in the development of the disease should be considered (PMID:12213676)
- presence of GHRH and its tumoral receptor splice variants in prostate cancers suggests the possible existence of an autocrine mitogenic loop (PMID:12364462)
- GHRH is essential for the somatotrope cellular proliferation that normally occurs during development-REVIEW (PMID:12424433)
- Review. Growth hormone-releasing hormone (GHRH) is a hypothalamic hormone that is essential for normal expansion of the somatotrope lineage during pituitary development. (PMID:12511850)
- autocrine stimulatory loop between GHRH and SV1 variant of GHRH receptor in primary breast cancers (PMID:15362970)
- Endogenous GHRH is indispensable for the nocturnal augmentation of GH secretion, but that it is unlikely to participate in the genesis of slow-wave sleep. (PMID:15538933)
- GHRH operates as a growth factor in breast cancer and probably other cancers as well (PMID:17372203)
- GHRH enhanced the ghrelin-induced GH secretion but had no effect on cortisol secretion (PMID:18329818)
- Variations in GHRH splice variants may play a role in promoting the development of endometriosis. (PMID:18684444)
- GHRH interacts with ghrelin receptor GHS-R1a, and, in consequence, modifies the ghrelin-associated intracellular signaling pathway (PMID:19088192)
- There is a relationship between allelic variation in the gene encoding GHRH and bone density. (PMID:19487270)
- GHRH mRNA was found in transformed human endometriotic stromal cells. (PMID:19524226)
- Our study was conducted on putatively sporadic IGHD patients. Thus, the finding of a dominant mutation with incomplete penetrance is not in contrast with previous reports of a recessive inheritance of GHRHR mutations. (PMID:19622623)
- decreased GHRH-induced GH secretion has a role in cardiovascular disease in obese women (PMID:20150954)
- The common regenerative and neuroprotective effects of epidermal growth factor (EGF) and growth hormone releasing hormone peptide(GHRP)-6 are associated with their versatile pro-survival and pro-regenerative mechanisms. (PMID:20169434)
- growth hormone-releasing hormone has a role as a growth factor in diverse tissues and various tumors (PMID:20372804)
- GHRH stimulated the NF-kappa b transcription factor, which is not only known to activate angiogenic factors but also the expression of genes involved in encoding enzymes in the prostaglandin-synthesis pathway such as COX-2 and the iNOS (PMID:20518847)
- Results demonstrate that a positive correlation exists between the endocrine potency and the antiproliferative efficacy of GHRH antagonists in tumors strongly expressing pGHRH-R. (PMID:20633588)
- the juxtapositions between GHRH axonal varicosities may be functional synapses and may represent the morphological substrate of the synchronized release of GHRH in the human hypothalamus. (PMID:20673733)
- Pretreatment with GHRH for 12 days could restore pituitary responsiveness to GHRH either in healthy aged men and growth hormone-deficient adult patients. (PMID:20843274)
- A single nucleotide polymorphism (SNP) in GnRH shows relationship to central precocious puberty in Chinese Han girls. (PMID:20869425)
- Data show that GHRH can stimulate the secretion of IL-17 from human peripheral blood mononuclear cells. (PMID:21196925)
- Studies indicate that appropriate consideration should be given to genetic defects in GH-1, IGF-I and GHRH causing growth hormone (GH) deficiency. (PMID:21274339)
- The present paper will give an overview of the main cardiovascular actions of the ghrelin gene-derived peptides and of GHRH. (PMID:21478211)
- GHRH mutations were not identified in a selected cohort of patients with isolated GH deficiency, suggesting that, if they exist, they may be an extremely rare cause of isolated GH deficiency. (PMID:21715545)
- The pathomechanisms involved in the genetic defects at both ends of the GHRH-IGF-1 axis. (PMID:22423511)
- case Report: multiple endocrine neoplasia type 1 family characterized by primary hyperparathyroidism, in association with acromegaly because of ectopic GHRH secretion by a pancreatic neuroendocrine tumor in a young man. (PMID:23542451)
- After 20 weeks of GHRH administration, gamma-aminobutyric acid levels are increased in all brain regions, N-acetylaspartylglutamate levels are increased in the dorsolateral frontal cortex, and myoinositol levels are decreased in the posterior cingulate. (PMID:23689947)
- GHRH excess and blockade in X-LAG syndrome (PMID:26671997)
- GHRH and GHRH-R loops are involved in placental choriocarcinoma cell line viability and apoptosis through Akt and eIF2a pathways. (PMID:26917260)
- GHRH stimulates a ligand-independent activation of EGFR involving at least cAMP/PKA and Src family signaling pathways (PMID:27816751)
- GHRH analogs of the Miami series powerfully suppress tumor growth, but have only a weak endocrine GH inhibitory activity. The suppression of tumor growth could be induced in part by the downregulation of (PMID:28130121)
- Report a high rate of GHRH-R and GHRH expression in apocrine breast carcinomas. (PMID:28438614)
- GHRH and GHRH-R are expressed in human adipocytes and are negatively associated; GHRH at low doses may exert an anti-obesity effect by inhibiting HMSC differentiation in adipocytes and by increasing adipocyte lipolysis in an autocrine or paracrine pathway; these effects are mediated by GH and GH-R (PMID:28626214)
- GHRH expression was significantly increased in patients with temporal lobe epilepsy. Coimmunoprecipitation confirmed that GHRH interacted with GABAAalpha1 and GABAAbeta2 + 3. GHRH may play an important role in inhibiting seizures by activating GABAARs. (PMID:29273763)
- Study in Han Chinese population revealed that rs3755792 and rs7624906 variants at SST in smoking population and rs3755792 in drinking population presented significant association with hypertension incidence. rs6032470 at GHRH had a statistical association with ischemic stroke incidence in smoking population. (PMID:29426577)
- c.57+1G>A mutation in the GHRH receptor gene is associated with severe and congenital isolated GH deficiency. (PMID:29571594)
- P53 can suppress inflammation in a plethora of human tissues. Growth Hormone - Releasing Hormone is a hypothalamic peptide with a great capacity to affect the complex networks of cellular regulation via GHRH - specific receptors. GHRH antagonistic and agonistic analogs have been developed for clinical applications (PMID:30344124)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ghrh | ENSDARG00000069481 |
| mus_musculus | Ghrh | ENSMUSG00000027643 |
| rattus_norvegicus | Ghrh | ENSRNOG00000007782 |
Paralogs (2): ADCYAP1 (ENSG00000141433), VIP (ENSG00000146469)
Protein
Protein identifiers
Somatoliberin — P01286 (reviewed: P01286)
Alternative names: Growth hormone-releasing factor, Growth hormone-releasing hormone, Somatocrinin, Somatorelin
All UniProt accessions (1): P01286
UniProt curated annotations — full annotation on UniProt →
Function. GRF is released by the hypothalamus and acts on the adenohypophyse to stimulate the secretion of growth hormone.
Subcellular location. Secreted.
Similarity. Belongs to the glucagon family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P01286-1 | 1 | yes |
| P01286-2 | 2 |
RefSeq proteins (2): NP_001171660, NP_066567* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000532 | Glucagon_GIP_secretin_VIP | Domain |
| IPR046963 | VIP/GHRH-like | Family |
Pfam: PF00123
UniProt features (10 total): propeptide 2, sequence variant 2, signal peptide 1, peptide 1, modified residue 1, splice variant 1, sequence conflict 1, helix 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7CZ5 | ELECTRON MICROSCOPY | 2.6 |
| 5BQM | X-RAY DIFFRACTION | 3.1 |
| 7V9M | ELECTRON MICROSCOPY | 3.29 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P01286-F1 | 78.24 | 0.26 |
Antibody-complex structures (SAbDab): 2 — 7CZ5, 7V9M
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 75
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-418555 | G alpha (s) signalling events |
| R-HSA-420092 | Glucagon-type ligand receptors |
| R-HSA-162582 | Signal Transduction |
| R-HSA-372790 | Signaling by GPCR |
| R-HSA-373080 | Class B/2 (Secretin family receptors) |
| R-HSA-388396 | GPCR downstream signalling |
| R-HSA-500792 | GPCR ligand binding |
MSigDB gene sets: 149 (showing top):
GOBP_CIRCADIAN_RHYTHM, REACTOME_GLUCAGON_TYPE_LIGAND_RECEPTORS, GOBP_BEHAVIOR, GOBP_REGULATION_OF_DEVELOPMENTAL_GROWTH, GOBP_GROWTH, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_RESPONSE_TO_FOOD, GOBP_HORMONE_TRANSPORT, GOBP_PITUITARY_GLAND_DEVELOPMENT, GOBP_POSITIVE_REGULATION_OF_BEHAVIOR, RIZKI_TUMOR_INVASIVENESS_3D_DN, GOBP_FOREBRAIN_DEVELOPMENT, GOBP_CELL_CELL_SIGNALING, GOBP_REGULATION_OF_CIRCADIAN_RHYTHM, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY
GO Biological Process (15): adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), cell-cell signaling (GO:0007267), positive regulation of cell population proliferation (GO:0008284), adenohypophysis development (GO:0021984), growth hormone secretion (GO:0030252), response to food (GO:0032094), regulation of protein localization (GO:0032880), multicellular organism growth (GO:0035264), positive regulation of multicellular organism growth (GO:0040018), positive regulation of insulin-like growth factor receptor signaling pathway (GO:0043568), positive regulation of circadian sleep/wake cycle, REM sleep (GO:0046005), positive regulation of growth hormone secretion (GO:0060124), positive regulation of cAMP/PKA signal transduction (GO:0141163), hormone secretion (GO:0046879), positive regulation of hormone secretion (GO:0046887)
GO Molecular Function (6): neuropeptide hormone activity (GO:0005184), growth hormone-releasing hormone activity (GO:0016608), growth hormone-releasing hormone receptor binding (GO:0031770), peptide hormone receptor binding (GO:0051428), signaling receptor binding (GO:0005102), hormone activity (GO:0005179)
GO Cellular Component (4): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), terminal bouton (GO:0043195), perikaryon (GO:0043204)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Signaling by GPCR | 2 |
| GPCR downstream signalling | 1 |
| Class B/2 (Secretin family receptors) | 1 |
| Signal Transduction | 1 |
| GPCR ligand binding | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| hormone activity | 2 |
| cellular anatomical structure | 2 |
| adenylate cyclase-modulating G protein-coupled receptor signaling pathway | 1 |
| adenylate cyclase activator activity | 1 |
| cell communication | 1 |
| signaling | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| pituitary gland development | 1 |
| anatomical structure development | 1 |
| peptide hormone secretion | 1 |
| response to nutrient levels | 1 |
| response to chemical | 1 |
| intracellular protein localization | 1 |
| regulation of localization | 1 |
| multicellular organismal process | 1 |
| developmental growth | 1 |
| multicellular organism growth | 1 |
| regulation of multicellular organism growth | 1 |
| positive regulation of developmental growth | 1 |
| positive regulation of multicellular organismal process | 1 |
| positive regulation of signal transduction | 1 |
| regulation of insulin-like growth factor receptor signaling pathway | 1 |
| insulin-like growth factor receptor signaling pathway | 1 |
| regulation of circadian sleep/wake cycle, REM sleep | 1 |
| circadian sleep/wake cycle, REM sleep | 1 |
| positive regulation of circadian sleep/wake cycle, sleep | 1 |
| growth hormone secretion | 1 |
| regulation of growth hormone secretion | 1 |
| positive regulation of peptide hormone secretion | 1 |
| cAMP/PKA signal transduction | 1 |
| regulation of cAMP/PKA signal transduction | 1 |
| positive regulation of intracellular signal transduction | 1 |
| hormone transport | 1 |
| signal release | 1 |
| positive regulation of cell communication | 1 |
| positive regulation of signaling | 1 |
| hormone secretion | 1 |
| regulation of hormone secretion | 1 |
Protein interactions and networks
STRING
1163 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GHRH | GHRHR | Q02643 | 999 |
| GHRH | GHSR | Q92847 | 973 |
| GHRH | SST | P01166 | 963 |
| GHRH | GHRL | Q9UBU3 | 931 |
| GHRH | VIP | P01282 | 930 |
| GHRH | GH1 | P01241 | 926 |
| GHRH | IGF1 | P01343 | 917 |
| GHRH | CRH | P06850 | 909 |
| GHRH | GCG | P01275 | 905 |
| GHRH | PRL | P01236 | 884 |
| GHRH | POMC | P01189 | 882 |
| GHRH | TRH | P20396 | 876 |
| GHRH | SCT | P09683 | 871 |
| GHRH | GNRH1 | P01148 | 858 |
| GHRH | ADCYAP1 | P18509 | 843 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FAP | GHRH | psi-mi:“MI:0194”(cleavage reaction) | 0.440 |
| GHRH | DPP4 | psi-mi:“MI:0194”(cleavage reaction) | 0.440 |
| GHRH | CDH23 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (4): CDH23 (Affinity Capture-MS), GHRH (Positive Genetic), GHRH (Two-hybrid), GHRH (Reconstituted Complex)
ESM2 similar proteins: A0MLS4, A2BD09, A2D4U1, A2D670, A2T6K4, O14669, P01257, P01286, P02818, P02820, P02822, P27916, P41547, P51693, P63292, P70160, P84348, P84349, P84350, Q03157, Q0VCT2, Q2NL23, Q3KNT9, Q3TYX2, Q5HZE8, Q5T124, Q60549, Q64375, Q6AYE5, Q6BEG6, Q6BEG7, Q71SY6, Q76IQ4, Q7M742, Q7TNI2, Q86UD1, Q8JFY4, Q8K2B0, Q8QZR4, Q8R182
Diamond homologs: P01286, P01287, P07217, P09916, P16043, P41534, P63292, P63293, Q60549, P41585, P42692, O70176, P01282, P01283, P01284, P04566, P0DJ95, P13589, P16613, P18509, P32648, P32649, P41535, P45644, P48143, P48144, P81401, Q09169, Q29W19
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
17 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 15 |
| Likely benign | 0 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
565 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:37254325:TCTCT:T | acceptor_gain | 1.0000 |
| 20:37254326:CTCT:C | acceptor_gain | 1.0000 |
| 20:37254326:CTCTC:C | acceptor_gain | 1.0000 |
| 20:37254327:TCTCT:T | acceptor_gain | 1.0000 |
| 20:37254328:CT:C | acceptor_gain | 1.0000 |
| 20:37254330:C:CC | acceptor_gain | 1.0000 |
| 20:37256389:CTTA:C | donor_loss | 1.0000 |
| 20:37256390:TTA:T | donor_loss | 1.0000 |
| 20:37256391:TA:T | donor_loss | 1.0000 |
| 20:37256392:A:AC | donor_gain | 1.0000 |
| 20:37256392:AC:A | donor_gain | 1.0000 |
| 20:37256392:ACC:A | donor_gain | 1.0000 |
| 20:37256392:ACCC:A | donor_gain | 1.0000 |
| 20:37256393:C:CC | donor_gain | 1.0000 |
| 20:37256393:C:CG | donor_loss | 1.0000 |
| 20:37256393:CC:C | donor_gain | 1.0000 |
| 20:37256393:CCC:C | donor_gain | 1.0000 |
| 20:37256393:CCCC:C | donor_gain | 1.0000 |
| 20:37256393:CCCCT:C | donor_gain | 1.0000 |
| 20:37256495:CATC:C | acceptor_gain | 1.0000 |
| 20:37256497:TC:T | acceptor_gain | 1.0000 |
| 20:37256498:CCTG:C | acceptor_gain | 1.0000 |
| 20:37256499:C:CC | acceptor_gain | 1.0000 |
| 20:37261737:TCTCA:T | donor_loss | 1.0000 |
| 20:37261738:CTCA:C | donor_loss | 1.0000 |
| 20:37261739:TCA:T | donor_loss | 1.0000 |
| 20:37261740:CA:C | donor_loss | 1.0000 |
| 20:37261741:A:T | donor_loss | 1.0000 |
| 20:37261742:C:A | donor_loss | 1.0000 |
| 20:37254329:TC:T | acceptor_loss | 0.9900 |
AlphaMissense
711 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:37256471:G:C | F37L | 0.974 |
| 20:37256471:G:T | F37L | 0.974 |
| 20:37256473:A:G | F37L | 0.974 |
| 20:37256457:C:G | R42P | 0.967 |
| 20:37256433:G:T | A50D | 0.950 |
| 20:37256472:A:C | F37C | 0.946 |
| 20:37256430:C:G | R51P | 0.943 |
| 20:37256461:A:C | Y41D | 0.943 |
| 20:37256472:A:G | F37S | 0.939 |
| 20:37256479:C:G | A35P | 0.933 |
| 20:37256424:A:G | L53P | 0.906 |
| 20:37256421:A:G | L54P | 0.894 |
| 20:37256421:A:T | L54H | 0.893 |
| 20:37256434:C:G | A50P | 0.893 |
| 20:37256469:G:A | T38I | 0.890 |
| 20:37256475:A:C | I36S | 0.878 |
| 20:37256439:A:G | L48P | 0.877 |
| 20:37256475:A:T | I36N | 0.873 |
| 20:37256473:A:T | F37I | 0.868 |
| 20:37256431:G:T | R51S | 0.858 |
| 20:37256475:A:G | I36T | 0.858 |
| 20:37256448:A:G | L45P | 0.857 |
| 20:37256461:A:T | Y41N | 0.852 |
| 20:37256880:A:G | W4R | 0.844 |
| 20:37256880:A:T | W4R | 0.844 |
| 20:37256473:A:C | F37V | 0.835 |
| 20:37256460:T:G | Y41S | 0.820 |
| 20:37256437:A:G | S49P | 0.817 |
| 20:37256462:G:C | S40R | 0.813 |
| 20:37256462:G:T | S40R | 0.813 |
dbSNP variants (sampled 300 via entrez): RS1000132207 (20:37260753 T>C), RS1000143736 (20:37251217 C>G), RS1000374953 (20:37254473 A>G), RS1000495155 (20:37252662 G>T), RS1000565684 (20:37251491 A>G), RS1000719489 (20:37260790 G>A), RS1001500439 (20:37260234 G>A), RS1001688193 (20:37263118 G>A), RS1001843270 (20:37258362 C>T), RS1001956170 (20:37258167 C>T), RS1002132348 (20:37253852 G>C), RS1002337559 (20:37252350 A>G), RS1002802459 (20:37261564 C>T), RS1002862333 (20:37252109 G>T), RS1003193576 (20:37258830 C>T)
Disease associations
OMIM: gene MIM:139190 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008839_36 | Height | 6.000000e-23 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 2 |
| bisphenol A | increases expression | 1 |
| terbufos | increases methylation | 1 |
| butyraldehyde | increases expression | 1 |
| acipimox | affects response to substance | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| plY protein, Streptococcus pneumoniae | affects binding, decreases response to substance, increases activity | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| GH-RH(1-29), desaminotyrosyl(1)-ornithyl(12,21)-alpha-aminobutryic acid(15)-norleucyl(27)-aspartyl(28)-agmatine(29)- | affects binding, decreases response to substance, increases activity, increases abundance | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Vorinostat | decreases expression, affects cotreatment | 1 |
| Cyclic AMP | increases activity, affects binding, increases abundance | 1 |
| Fonofos | increases methylation | 1 |
| Fatty Acids, Nonesterified | affects response to substance | 1 |
| Parathion | increases methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.