GJA4
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Also known as CX37
Summary
GJA4 (gap junction protein alpha 4, HGNC:4278) is a protein-coding gene on chromosome 1p34.3, encoding Gap junction alpha-4 protein (P35212). One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
This gene encodes a member of the connexin gene family. The encoded protein is a component of gap junctions, which are composed of arrays of intercellular channels that provide a route for the diffusion of low molecular weight materials from cell to cell. Mutations in this gene have been associated with atherosclerosis and a higher risk of myocardial infarction.
Source: NCBI Gene 2701 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 59 total — 1 pathogenic
- MANE Select transcript:
NM_002060
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4278 |
| Approved symbol | GJA4 |
| Name | gap junction protein alpha 4 |
| Location | 1p34.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CX37 |
| Ensembl gene | ENSG00000187513 |
| Ensembl biotype | protein_coding |
| OMIM | 121012 |
| Entrez | 2701 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000342280, ENST00000450137, ENST00000868038, ENST00000868039, ENST00000868040, ENST00000971021, ENST00000971022
RefSeq mRNA: 1 — MANE Select: NM_002060
NM_002060
CCDS: CCDS30669
Canonical transcript exons
ENST00000342280 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001389199 | 34794197 | 34795747 |
| ENSE00001796424 | 34792999 | 34793068 |
Expression profiles
Bgee: expression breadth ubiquitous, 215 present calls, max score 96.66.
FANTOM5 (CAGE): breadth broad, TPM avg 3.3164 / max 248.7448, expressed in 413 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 2082 | 3.3164 | 413 |
Top tissues by expression
268 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tibial artery | UBERON:0007610 | 96.66 | gold quality |
| popliteal artery | UBERON:0002250 | 96.64 | gold quality |
| apex of heart | UBERON:0002098 | 96.05 | gold quality |
| omental fat pad | UBERON:0010414 | 94.94 | gold quality |
| peritoneum | UBERON:0002358 | 94.91 | gold quality |
| right lung | UBERON:0002167 | 94.41 | gold quality |
| aorta | UBERON:0000947 | 93.85 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 93.79 | gold quality |
| vena cava | UBERON:0004087 | 93.50 | gold quality |
| heart left ventricle | UBERON:0002084 | 93.33 | gold quality |
| cardiac ventricle | UBERON:0002082 | 93.23 | gold quality |
| left coronary artery | UBERON:0001626 | 93.14 | gold quality |
| coronary artery | UBERON:0001621 | 92.82 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 92.81 | gold quality |
| right coronary artery | UBERON:0001625 | 92.66 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 92.33 | gold quality |
| heart right ventricle | UBERON:0002080 | 91.35 | gold quality |
| heart | UBERON:0000948 | 91.30 | gold quality |
| left uterine tube | UBERON:0001303 | 91.25 | gold quality |
| right atrium auricular region | UBERON:0006631 | 90.79 | gold quality |
| tibial nerve | UBERON:0001323 | 90.73 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 90.53 | gold quality |
| ascending aorta | UBERON:0001496 | 90.43 | gold quality |
| thoracic aorta | UBERON:0001515 | 90.35 | gold quality |
| adipose tissue | UBERON:0001013 | 89.87 | gold quality |
| cardiac atrium | UBERON:0002081 | 89.76 | gold quality |
| right uterine tube | UBERON:0001302 | 89.63 | gold quality |
| gastrocnemius | UBERON:0001388 | 89.15 | gold quality |
| thyroid gland | UBERON:0002046 | 89.15 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 89.12 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 12.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8205 | yes | 1288.29 |
| E-MTAB-8271 | yes | 799.14 |
| E-GEOD-135922 | yes | 50.48 |
| E-MTAB-8142 | yes | 41.14 |
| E-CURD-112 | yes | 34.48 |
| E-HCAD-11 | yes | 23.95 |
| E-MTAB-8410 | yes | 16.71 |
| E-MTAB-9067 | yes | 11.84 |
| E-GEOD-134144 | yes | 11.64 |
| E-GEOD-137537 | yes | 6.20 |
| E-MTAB-10137 | yes | 3.87 |
| E-MTAB-6678 | no | 2.44 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): APLNR, CTNNB1, FOXO3, KLF2
miRNA regulators (miRDB)
20 targeting GJA4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-3934-5P | 99.67 | 64.04 | 846 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
| HSA-MIR-516B-5P | 99.56 | 66.33 | 1495 |
| HSA-MIR-6737-3P | 98.95 | 68.56 | 1577 |
| HSA-MIR-7157-3P | 98.95 | 68.70 | 1582 |
| HSA-MIR-1294 | 98.91 | 69.26 | 1030 |
| HSA-MIR-9986 | 98.91 | 69.28 | 1024 |
| HSA-MIR-936 | 98.87 | 70.51 | 1124 |
| HSA-MIR-2467-5P | 97.36 | 67.71 | 991 |
| HSA-MIR-4433B-3P | 97.22 | 63.62 | 663 |
| HSA-MIR-4689 | 96.97 | 65.79 | 1209 |
| HSA-MIR-1266-3P | 96.23 | 66.36 | 778 |
| HSA-MIR-6858-5P | 96.05 | 64.59 | 1020 |
| HSA-MIR-1539 | 92.91 | 60.97 | 91 |
Literature-anchored findings (GeneRIF, showing 40)
- mRNA levels of connexins in different sizes of luteinized normal and hyperstimulated follicles. (PMID:14667880)
- These data suggest that alterations of specific connexins, in this case connexin 37, and resulting changes in intercellular communication may modulate endothelial cell growth and death. (PMID:15194487)
- NO inhibits the intercellular transfer of small molecules by a specific influence on Cx37 (PMID:15481066)
- Here, data for human connexin37 (hCx37) hemichannels indicate that voltage gating can be explained as block/unblock without the necessity for an independent voltage gate. (PMID:15504903)
- T1019 Cx37 SNP has shown to be a risk factor for acute myocardial infarction (AMI). (PMID:15982495)
- This is the first study to demonstrate that flow simultaneously and differentially regulates expression of the Cx37, Cx40, and Cx43 proteins. (PMID:16361362)
- investigated whether the allelic variants 1019C and 1019T are differentially predictive of increased risk for coronary artery disease (CAD) and myocardial infarction (MI) (PMID:16677656)
- The connexin37 C1019T polymorphism is not related with markers of subclinical atherosclerosis in young adults in Finland (PMID:17196598)
- Cx37 is expressed in the vascular endothelium as well as in monocytes and macrophages and these three cell types are key players in atherogenesis. (PMID:17318613)
- Connexin 37 is expressed in the granulosa layer of follicles in the human ovary, and expression of Cx37 in granulosa cells was not different between poor responder and nonpoor responder to ovulation induction. (PMID:17531234)
- This study investigates the responses of endothelial connexin 37, connexin 40, and connexin 43 (Cx37, Cx40, and Cx43) to shear stress and substrate. (PMID:17922338)
- Study suggests that GJA4 gene C1019T polymorphism and/or its related C-C-D haplotype might contribute to an increased risk of CAD and potentially play an important role in the development of coronary atherosclerosis in northern Han Chinese. (PMID:18073482)
- variation in the connexin gene may modify effects risk factors have on vascular function (PMID:18605953)
- As much as half the length of the connexin N-terminus can be deleted without affecting formation of gap junction plaques, but an intact N-terminus is required for hemichannel gating and intercellular communication. (PMID:18664489)
- The electrical properties of Cx37 hemichannels (HCs) and gap junction channels (GJCs) were measured with voltage-clamp methods. (PMID:19166859)
- connexin37 C1019T polymorphism is associated with peripheral artery disease in Japanese type 2 diabetic patients. (PMID:19407064)
- The alpha helical structure of the connexin 37 N terminus may be dispensable for protein localization, but it is required for channel and hemichannel function. (PMID:19478091)
- Data show for the first time a functional and specific interaction between eNOS and Cx37 in endothelial cells. (PMID:20081116)
- Results show that Cx40, Cx37, Cx43 and Cx45 were expressed within the glomeruli. (PMID:20530971)
- Cx37 C1019T polymorphism is associated with tumour cell proliferation. (PMID:20705954)
- Connexin 37 genetic variants significantly affect carotid IMT and contribute to future development of ischemic stroke (PMID:21044781)
- Endothelium-dependent vasodilation is primarily mediated by connexin 37 in mesenteric artery. (PMID:21172909)
- The gene for Cx37 was associated with subclinical atherosclerosis in women with type 1 and 2 diabetes and in women with advanced central obesity. (PMID:21208019)
- In women with higher fasting glycemia TT genotype of Cx37 polymorphism was protective against subclinical atherosclerosis. (PMID:21617605)
- We propose that the establishment of gap junctional communication between Cx37-expressing platelets provides a mechanism to limit thrombus propensity. (PMID:21810657)
- GJA4 polymorphism is not associated with stroke risk in the Taiwanese population. (PMID:22305353)
- We report the presence of connexins in platelets, notably connexin37, and that the formation of gap junctions within platelet thrombi is required for the control of clot retraction. (PMID:22528526)
- The data show that induced expression of either Cx37 or Cx40 in Cx43-expressing cells can selectively alter the intercellular exchange of some molecules without affecting the transfer of others. (PMID:22729648)
- C1019T polymorphism in the connexin 37 gene is associated with Helicobacter pylori infection and gastric cancer. (PMID:22901223)
- It is suggested that the polymorphism in the Cx37 gene (but not Cx40 gene) potentially plays a significant role in the manifestation of AMI disease in Iranian population (PMID:23724624)
- 1019C/T polymorphism in the CX37 gene is associated with susceptibility to coronary artery disease as well as restenosis after coronary stenting in male patients. (PMID:23926016)
- Determination of Cx37 C1019T and eNOS G894T polymorphisms may be used to detect a genetic predisposition to the development of myocardial infarction in patients with hemodynamically insignificant atherosclerosis and in apparently healthy individuals. (PMID:24261225)
- the C1019T polymorphism may be a moderate risk factor for MI and that DM was likely a potential source of between-study heterogeneity. [META-ANALYSIS] (PMID:24333099)
- The C allele in the CX37 gene might be associated with the susceptibility to EH in population of Wuxi, China. (PMID:24685073)
- three variants in PNPLA3 gene may be a genetic risk factor for NASH (PMID:24773516)
- Review/Meta-analysis: Cx37 C1019T was a risk factor for myocardial infarction and a protective factor for coronary artery disease. (PMID:24937033)
- The C allele in the CX37 gene might be associated with susceptibility to dilated cardiomyopathy (DCM) in Chinese Han; female carriers of the C allele had higher DCM risk compared with TT homozygotes than males (PMID:25501978)
- The protective effect of the T allele of the Cx37 gene might be strongly modified by smoking; in women, this effect could be mediated through stem cells. (PMID:26588185)
- Our findings suggest that the Cx37 C1019T variation may contribute to the risk of PCOS in the South Indian women. (PMID:26656196)
- The CX37 rs1764390 G allele is associated with increased susceptibility to sepsis, which may be involved in the process of sepsis via mediating the plasma levels of NO, IL-6 and CRP. (PMID:27939333)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gja4 | ENSDARG00000070357 |
| mus_musculus | Gja4 | ENSMUSG00000050234 |
| rattus_norvegicus | Gja4 | ENSRNOG00000014357 |
Paralogs (20): GJA8 (ENSG00000121634), GJB6 (ENSG00000121742), GJA3 (ENSG00000121743), GJA9 (ENSG00000131233), GJA10 (ENSG00000135355), GJA1 (ENSG00000152661), GJD2 (ENSG00000159248), GJB7 (ENSG00000164411), GJB2 (ENSG00000165474), GJB1 (ENSG00000169562), GJC3 (ENSG00000176402), GJD4 (ENSG00000177291), GJC1 (ENSG00000182963), GJD3 (ENSG00000183153), GJB3 (ENSG00000188910), GJB5 (ENSG00000189280), GJB4 (ENSG00000189433), GJC2 (ENSG00000198835), GJE1 (ENSG00000203733), GJA5 (ENSG00000265107)
Protein
Protein identifiers
Gap junction alpha-4 protein — P35212 (reviewed: P35212)
Alternative names: Connexin-37
All UniProt accessions (2): P35212, Q5JW71
UniProt curated annotations — full annotation on UniProt →
Function. One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
Subunit / interactions. A connexon is composed of a hexamer of connexins.
Subcellular location. Cell membrane. Cell junction. Gap junction.
Tissue specificity. Expressed in multiple organs and tissues, including heart, uterus, ovary, and blood vessel endothelium.
Similarity. Belongs to the connexin family. Alpha-type (group II) subfamily.
RefSeq proteins (1): NP_002051* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000500 | Connexin | Family |
| IPR002263 | Connexin37 | Family |
| IPR013092 | Connexin_N | Domain |
| IPR017990 | Connexin_CS | Conserved_site |
| IPR019570 | Connexin_CCC | Domain |
| IPR038359 | Connexin_N_sf | Homologous_superfamily |
Pfam: PF00029
UniProt features (16 total): topological domain 5, sequence variant 4, transmembrane region 4, chain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P35212-F1 | 74.82 | 0.33 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-190861 | Gap junction assembly |
MSigDB gene sets: 139 (showing top):
BROWNE_HCMV_INFECTION_30MIN_DN, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_UP, WWTAAGGC_UNKNOWN, GCANCTGNY_MYOD_Q6, REACTOME_MEMBRANE_TRAFFICKING, GOBP_CELL_CELL_SIGNALING, GOBP_CELL_JUNCTION_ORGANIZATION, BROWNE_HCMV_INFECTION_14HR_DN, chr1p34, BROWNE_HCMV_INFECTION_24HR_DN, GOBP_CELL_JUNCTION_ASSEMBLY, REACTOME_GAP_JUNCTION_ASSEMBLY, WESTON_VEGFA_TARGETS_6HR, GOBP_CELL_CELL_JUNCTION_ASSEMBLY, GOCC_CELL_CELL_JUNCTION
GO Biological Process (5): blood vessel development (GO:0001568), cell-cell junction assembly (GO:0007043), cell-cell signaling (GO:0007267), cell communication (GO:0007154), transmembrane transport (GO:0055085)
GO Molecular Function (2): gap junction channel activity (GO:0005243), protein binding (GO:0005515)
GO Cellular Component (5): plasma membrane (GO:0005886), gap junction (GO:0005921), connexin complex (GO:0005922), membrane (GO:0016020), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Gap junction trafficking | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 2 |
| vasculature development | 1 |
| anatomical structure development | 1 |
| cell junction assembly | 1 |
| cell-cell junction organization | 1 |
| cell communication | 1 |
| signaling | 1 |
| transport | 1 |
| wide pore channel activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell-cell junction | 1 |
| gap junction | 1 |
| plasma membrane protein complex | 1 |
| cellular anatomical structure | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
1273 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GJA4 | GJA5 | P36382 | 955 |
| GJA4 | GJA1 | P17302 | 900 |
| GJA4 | GJC1 | P36383 | 836 |
| GJA4 | PANX1 | Q96RD7 | 570 |
| GJA4 | SERPINE1 | P05121 | 557 |
| GJA4 | RIC1 | Q4ADV7 | 549 |
| GJA4 | GDF9 | O60383 | 538 |
| GJA4 | BMP15 | O95972 | 522 |
| GJA4 | FOXC2 | Q99958 | 514 |
| GJA4 | MMP3 | P08254 | 492 |
| GJA4 | PKP2 | Q99959 | 484 |
| GJA4 | EFNB2 | P52799 | 481 |
| GJA4 | PANX2 | Q96RD6 | 478 |
| GJA4 | HIGD1B | Q9P298 | 471 |
| GJA4 | PANX3 | Q96QZ0 | 470 |
IntAct
18 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GJA4 | OPRM1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| OPRM1 | GJA4 | psi-mi:“MI:0915”(physical association) | 0.630 |
| TMEM86B | GJA4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJA4 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| GJA4 | CD81 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJA4 | MS4A13 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJA4 | TMEM86B | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJA4 | OPRK1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GJA4 | Oprd1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GJA4 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| CD81 | GJA4 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MS4A13 | GJA4 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (11): GJA4 (Two-hybrid), GJA4 (Affinity Capture-Western), GJA4 (Affinity Capture-Western), GJA4 (Affinity Capture-Western), GJA4 (Two-hybrid), GJA4 (Two-hybrid), GJA4 (Two-hybrid), MS4A13 (Two-hybrid), GJA4 (Two-hybrid), MAP1LC3B (Affinity Capture-Western), GJA4 (Affinity Capture-MS)
ESM2 similar proteins: A0A140LIJ0, A1L3G9, A4IFL1, B9X187, O18968, O70491, P08033, P08034, P28230, P35212, P36380, P51915, P60572, Q02738, Q059Y8, Q0V8E7, Q1LXZ7, Q28FG4, Q29559, Q4QR83, Q5E9Z5, Q5FVF4, Q5FWS4, Q5JW98, Q5R7B4, Q5T197, Q5T1A1, Q60HF7, Q640M6, Q6GMB1, Q6WGK6, Q7SY10, Q7TNJ0, Q8BXV2, Q8C2L6, Q8C9E8, Q8CE93, Q8CEG0, Q8N5C1, Q8NDZ6
Diamond homologs: A2VE67, A4GG66, A4GVD1, A4IFL1, A6XKM2, O18968, O54851, O57474, O70610, O75712, O93533, O95377, O95452, P08033, P08034, P08050, P08983, P14154, P16863, P16864, P17302, P18246, P18860, P18861, P21994, P23242, P25305, P28228, P28229, P28230, P28231, P28232, P28233, P28234, P28235, P28236, P29033, P29414, P29415, P33725
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
59 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 53 |
| Likely benign | 2 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 996750 | NM_002060.3(GJA4):c.121G>T (p.Gly41Cys) | Pathogenic |
SpliceAI
245 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:34794191:TTGCA:T | acceptor_loss | 1.0000 |
| 1:34794192:TGCAG:T | acceptor_loss | 1.0000 |
| 1:34794193:GCA:G | acceptor_loss | 1.0000 |
| 1:34794194:CAGAC:C | acceptor_loss | 1.0000 |
| 1:34794195:A:AG | acceptor_gain | 1.0000 |
| 1:34794195:AGAC:A | acceptor_gain | 1.0000 |
| 1:34794195:AGACG:A | acceptor_gain | 1.0000 |
| 1:34794196:G:GA | acceptor_gain | 1.0000 |
| 1:34794196:GAC:G | acceptor_gain | 1.0000 |
| 1:34794196:GACG:G | acceptor_gain | 1.0000 |
| 1:34794196:GACGG:G | acceptor_gain | 1.0000 |
| 1:34793065:GGCG:G | donor_gain | 0.9900 |
| 1:34793066:GCGG:G | donor_gain | 0.9900 |
| 1:34793069:G:GG | donor_gain | 0.9900 |
| 1:34793063:C:T | donor_gain | 0.9800 |
| 1:34793066:GCG:G | donor_gain | 0.9800 |
| 1:34793066:GCGGT:G | donor_loss | 0.9800 |
| 1:34793067:CGG:C | donor_loss | 0.9800 |
| 1:34793069:G:C | donor_loss | 0.9800 |
| 1:34793070:T:G | donor_loss | 0.9800 |
| 1:34793071:GA:G | donor_loss | 0.9800 |
| 1:34794192:T:TA | acceptor_gain | 0.9800 |
| 1:34794196:GA:G | acceptor_gain | 0.9800 |
| 1:34793072:AGT:A | donor_loss | 0.9700 |
| 1:34793064:AGGCG:A | donor_gain | 0.9300 |
| 1:34793065:GGCGG:G | donor_gain | 0.9300 |
| 1:34793067:CG:C | donor_gain | 0.8900 |
| 1:34793068:GG:G | donor_gain | 0.8900 |
| 1:34793073:G:C | donor_loss | 0.8600 |
| 1:34794198:CGG:C | acceptor_gain | 0.8200 |
AlphaMissense
2131 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:34794348:G:C | W45C | 1.000 |
| 1:34794348:G:T | W45C | 1.000 |
| 1:34794373:T:A | C54S | 1.000 |
| 1:34794374:G:C | C54S | 1.000 |
| 1:34794286:T:A | W25R | 0.999 |
| 1:34794286:T:C | W25R | 0.999 |
| 1:34794346:T:A | W45R | 0.999 |
| 1:34794346:T:C | W45R | 0.999 |
| 1:34794368:T:G | F52C | 0.999 |
| 1:34794373:T:C | C54R | 0.999 |
| 1:34794375:T:G | C54W | 0.999 |
| 1:34794394:T:A | C61S | 0.999 |
| 1:34794395:G:C | C61S | 0.999 |
| 1:34794406:T:A | C65S | 0.999 |
| 1:34794407:G:A | C65Y | 0.999 |
| 1:34794407:G:C | C65S | 0.999 |
| 1:34794408:C:G | C65W | 0.999 |
| 1:34794421:T:C | F70L | 0.999 |
| 1:34794423:C:A | F70L | 0.999 |
| 1:34794423:C:G | F70L | 0.999 |
| 1:34794469:A:C | S86R | 0.999 |
| 1:34794471:C:A | S86R | 0.999 |
| 1:34794471:C:G | S86R | 0.999 |
| 1:34794476:C:A | P88H | 0.999 |
| 1:34794476:C:G | P88R | 0.999 |
| 1:34794718:T:C | F169L | 0.999 |
| 1:34794720:C:A | F169L | 0.999 |
| 1:34794720:C:G | F169L | 0.999 |
| 1:34794805:T:A | C198S | 0.999 |
| 1:34794806:G:C | C198S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000583073 (1:34795506 T>C), RS1001594198 (1:34791735 A>G), RS1003375913 (1:34793347 G>A), RS1003404658 (1:34792874 G>A), RS1004597042 (1:34793209 G>A), RS1006556859 (1:34795533 C>A,G,T), RS1006608620 (1:34795830 C>A,T), RS1007926919 (1:34792476 T>A,G), RS1008045483 (1:34795867 C>T), RS1009346133 (1:34793780 G>A), RS1011021167 (1:34792422 T>C), RS1011371178 (1:34792176 T>C,G), RS1011873019 (1:34792977 G>C,T), RS1012447395 (1:34795049 C>G,T), RS1012516672 (1:34791584 AG>A)
Disease associations
OMIM: gene MIM:121012 | disease phenotypes:
GenCC curated gene-disease
Mondo (2): liver hemangioma (MONDO:0002404), skin hemangioma (MONDO:0003110)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001549_5 | Formal thought disorder in schizophrenia | 9.000000e-06 |
| GCST009612_3 | Triglyceride levels x thiazide or thiazide-like diuretics use interaction | 6.000000e-07 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004805 | formal thought disorder |
| EFO:0004530 | triglyceride measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other ic — Connexins and Pannexins
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, increases methylation, affects expression | 4 |
| Progesterone | affects cotreatment, decreases expression, increases expression | 3 |
| Estradiol | affects cotreatment, decreases expression | 2 |
| bisphenol F | increases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| terbufos | increases methylation | 1 |
| arsenite | increases methylation | 1 |
| methylparaben | increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| epigallocatechin gallate | decreases expression | 1 |
| astragaloside A | decreases expression, decreases reaction | 1 |
| entinostat | decreases expression | 1 |
| malondialdehyde-low density lipoprotein, human | decreases expression, decreases reaction | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Lycopene | decreases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Acetylcysteine | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Calcitriol | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Methotrexate | decreases expression | 1 |
| Nickel | increases expression | 1 |
| Oxygen | decreases expression | 1 |
| Parathion | increases methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
Clinical trials (associated diseases)
2 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01785212 | Not specified | COMPLETED | The Influence of Two Different Hepatectomy Methods on Transection Speed and Chemokine Release From the Liver |
| NCT04709718 | Not specified | COMPLETED | Surgical Management of Giant Hepatic Hemangioma |
Related Atlas pages
- Targeted by drugs: Calcium, Carbenoxolone
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): liver hemangioma, skin hemangioma