GLCCI1-DT

Summary

GLCCI1-DT (GLCCI1 divergent transcript, HGNC:40852) is a long non-coding RNA gene on chromosome 7p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40852
Approved symbol	GLCCI1-DT
Name	GLCCI1 divergent transcript
Location	7p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233108
Ensembl biotype	lncRNA
Entrez	100505921
RNAcentral	URS000075BA7C — lncRNA, 1186 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000428660, ENST00000451066, ENST00000716323, ENST00000837755

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000428660 — 2 exons

Exon	Start	End
ENSE00001665682	7969772	7969903
ENSE00004029488	7958183	7958618

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 81.97.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2538 / max 31.5759, expressed in 113 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
82694	0.1439	41
82693	0.0499	20
82692	0.0325	17
82691	0.0275	11

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.97	gold quality
bone marrow	UBERON:0002371	78.28	gold quality
bone marrow cell	CL:0002092	74.45	gold quality
sural nerve	UBERON:0015488	73.72	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.31	gold quality
ventricular zone	UBERON:0003053	68.16	gold quality
colonic epithelium	UBERON:0000397	63.66	silver quality
lymph node	UBERON:0000029	62.28	gold quality
skeletal muscle tissue	UBERON:0001134	62.18	gold quality
granulocyte	CL:0000094	61.46	gold quality
testis	UBERON:0000473	60.77	gold quality
left testis	UBERON:0004533	60.02	gold quality
right testis	UBERON:0004534	58.71	gold quality
blood	UBERON:0000178	57.89	gold quality
vermiform appendix	UBERON:0001154	57.57	gold quality
tonsil	UBERON:0002372	57.31	gold quality
islet of Langerhans	UBERON:0000006	57.26	gold quality
placenta	UBERON:0001987	56.86	gold quality
monocyte	CL:0000576	55.19	gold quality
calcaneal tendon	UBERON:0003701	54.84	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.53	gold quality
stromal cell of endometrium	CL:0002255	54.23	silver quality
spleen	UBERON:0002106	54.20	gold quality
prefrontal cortex	UBERON:0000451	54.06	gold quality
thyroid gland	UBERON:0002046	53.03	gold quality
rectum	UBERON:0001052	52.85	gold quality
muscle of leg	UBERON:0001383	52.84	gold quality
left lobe of thyroid gland	UBERON:0001120	52.80	gold quality
right lobe of thyroid gland	UBERON:0001119	52.06	gold quality
gastrocnemius	UBERON:0001388	51.62	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.