GNAO1
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Also known as G-ALPHA-o
Summary
GNAO1 (G protein subunit alpha o1, HGNC:4389) is a protein-coding gene on chromosome 16q13, encoding Guanine nucleotide-binding protein G(o) subunit alpha (P09471). Guanine nucleotide-binding proteins (G proteins) function as transducers downstream of G protein-coupled receptors (GPCRs) in numerous signaling cascades.
The protein encoded by this gene represents the alpha subunit of the Go heterotrimeric G-protein signal-transducing complex. Defects in this gene are a cause of early-onset epileptic encephalopathy. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 2775 — RefSeq curated summary.
At a glance
- Gene–disease (curated): movement disorder (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 14
- Clinical variants (ClinVar): 588 total — 50 pathogenic, 41 likely-pathogenic
- Phenotypes (HPO): 81
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_020988
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4389 |
| Approved symbol | GNAO1 |
| Name | G protein subunit alpha o1 |
| Location | 16q13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | G-ALPHA-o |
| Ensembl gene | ENSG00000087258 |
| Ensembl biotype | protein_coding |
| OMIM | 139311 |
| Entrez | 2775 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 11 protein_coding, 7 retained_intron, 6 protein_coding_CDS_not_defined, 5 nonsense_mediated_decay
ENST00000262493, ENST00000262494, ENST00000562316, ENST00000563440, ENST00000563661, ENST00000564727, ENST00000564798, ENST00000565363, ENST00000568375, ENST00000569295, ENST00000570235, ENST00000638185, ENST00000638210, ENST00000638705, ENST00000638836, ENST00000639055, ENST00000639251, ENST00000639268, ENST00000639341, ENST00000639770, ENST00000639787, ENST00000639966, ENST00000640390, ENST00000640469, ENST00000640560, ENST00000640893, ENST00000675160, ENST00000714052, ENST00000873096
RefSeq mRNA: 2 — MANE Select: NM_020988
NM_020988, NM_138736
CCDS: CCDS10756, CCDS10757
Canonical transcript exons
ENST00000262493 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000852753 | 56336731 | 56336860 |
| ENSE00001204552 | 56328631 | 56328791 |
| ENSE00001322402 | 56354866 | 56355081 |
| ENSE00001664398 | 56351384 | 56351537 |
| ENSE00002608417 | 56191489 | 56192353 |
| ENSE00003570668 | 56275931 | 56276072 |
| ENSE00003789471 | 56334729 | 56334857 |
| ENSE00004022637 | 56192574 | 56192616 |
| ENSE00004022640 | 56356103 | 56357444 |
Expression profiles
Bgee: expression breadth ubiquitous, 261 present calls, max score 99.32.
FANTOM5 (CAGE): breadth broad, TPM avg 27.3688 / max 1047.8138, expressed in 604 samples.
FANTOM5 promoters (22 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 154189 | 11.5079 | 387 |
| 154185 | 6.6017 | 490 |
| 154188 | 1.7592 | 237 |
| 154186 | 1.2420 | 266 |
| 154190 | 1.1009 | 147 |
| 154192 | 1.0101 | 133 |
| 154193 | 0.7938 | 115 |
| 154194 | 0.7697 | 123 |
| 154187 | 0.7651 | 231 |
| 154191 | 0.5734 | 118 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 99.32 | gold quality |
| superficial temporal artery | UBERON:0001614 | 99.12 | silver quality |
| entorhinal cortex | UBERON:0002728 | 98.76 | gold quality |
| prefrontal cortex | UBERON:0000451 | 98.74 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 98.74 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.73 | gold quality |
| putamen | UBERON:0001874 | 98.68 | gold quality |
| postcentral gyrus | UBERON:0002581 | 98.61 | gold quality |
| buccal mucosa cell | CL:0002336 | 98.60 | gold quality |
| caudate nucleus | UBERON:0001873 | 98.59 | gold quality |
| primary visual cortex | UBERON:0002436 | 98.58 | gold quality |
| parietal lobe | UBERON:0001872 | 98.56 | gold quality |
| nucleus accumbens | UBERON:0001882 | 98.53 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 98.53 | gold quality |
| temporal lobe | UBERON:0001871 | 98.49 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.47 | gold quality |
| frontal cortex | UBERON:0001870 | 98.45 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 98.43 | silver quality |
| amygdala | UBERON:0001876 | 98.42 | gold quality |
| neocortex | UBERON:0001950 | 98.38 | gold quality |
| occipital lobe | UBERON:0002021 | 98.36 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 98.34 | gold quality |
| telencephalon | UBERON:0001893 | 98.32 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.31 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.30 | gold quality |
| cerebral cortex | UBERON:0000956 | 98.26 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.26 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 98.23 | gold quality |
| cingulate cortex | UBERON:0003027 | 98.14 | gold quality |
| Ammon’s horn | UBERON:0001954 | 98.10 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7316 | yes | 41.77 |
| E-GEOD-137537 | yes | 13.56 |
| E-GEOD-83139 | yes | 10.63 |
| E-MTAB-6678 | yes | 7.24 |
| E-ANND-3 | yes | 5.18 |
| E-HCAD-10 | yes | 4.70 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
102 targeting GNAO1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 38)
- a novel role in the signal transduction of thrombin receptors in HMECs (human microvascular endothelial cells) that regulates calcium signaling and cytoskeletal rearrangements (PMID:12039967)
- study suggests that one of the functions of Goalpha in the brain is to mediate extracellular signal-regulated kinase activation by G protein-coupled receptors (PMID:12911629)
- Activated Goalpha interacted directly with PLZF, and enhanced its function as a transcriptional and cell growth suppressor. (PMID:18262754)
- the successful purification of functionally intact Gbeta5-free recombinant RGS11 was reported that differentially interact with R7BP and Galpha(oa). (PMID:19497306)
- A switch in G-protein coupling, in which glutamate775lysine loses G(o) subunit coupling but retains coupling to G(i), may explain the highly specialized metabotropic glutamate receptor mGlu6 phenotype. (PMID:19666700)
- CKbeta8- and CKbeta8-1-induced activation of ERK1/2 is mediated by the G(i)/G(o) protein, PLC, and PKCdelta. (PMID:20097574)
- Data reveal a change in the repertoire of Galpha(i/o) subunits during T cell differentiation and suggest functional equivalence among Galpha(i/o) subunits irrespective of their relative abundance. (PMID:20829352)
- Data show that HEK293T cells transfected with estrogen receptor alpha (ERalpha)+/-Galpha(o) revealed that Galpha(o) stimulated phosphorylation of ERK MAP kinases ERK 1/2 and subsequently increased the phosphorylation of ERalpha on serine 118. (PMID:22562654)
- Down-regulation of GNAO1 increases cell proliferation, while suppressing the senescence of hepatocellular carcinoma cells. (PMID:23984917)
- These data suggest that aberrant Galphao signaling can cause multiple neurodevelopmental phenotypes, including epileptic encephalopathy and involuntary movements. (PMID:23993195)
- the present study is the first to demonstrate that GNAO1 is overexpressed in GC and that its overexpression correlates with poor prognosis, as it promotes gastric cancer cell viability. (PMID:24366063)
- Genetic variants of BCL2, GNAO1, and CHD2 are associated with non-obstructive azoospermia risk. (PMID:24549219)
- Galphao-R243H has a mild decrease in nucleotide affinity that causes rapid nucleotide turnover and subsequent hyperactivity in cancer (PMID:24982418)
- Phenotypic spectrum of novel GNAO1 variants in four unrelated female patients included epileptic encephalopathy and involuntary movements with severe developmental delay. (PMID:25966631)
- authors report 2 cases of brothers with a severe movement disorder and hypotonia without epilepsy who have been confirmed by whole exome sequencing to have a novel mutation in GNAO1 (PMID:26060304)
- Endothelial cells in capillary malformations are enriched for GNAQ mutations and are likely responsible for the pathophysiology underlying capillary malformation. (PMID:26368330)
- GNAO1 is a disease-causing gene for the autosomal dominant form of early infantile epileptic encephalopathy. The novel pathogenic variant identified in should contribute to our understanding of the expanding spectrum of infantile-onset epilepsy. (PMID:26485252)
- Taken together, the data presented here suggest that TLR2 activation in human mast cells promotes the release of inflammatory mediators via distinct signaling pathways that partially depend on the action of Go proteins. (PMID:27515449)
- The neurological phenotypes associated with GNAO1 mutations appear to lie on a spectrum, and it is possible that the c.607G>A (p.Gly203Arg) variant characterizes a phenotype with both severe epilepsy and chorea. (PMID:28202424)
- first report of siblings of opposite sex harboring the same GNAO1 mutation but showing differences in phenotype with pronounced dystonia in the boy and epilepsy in his sister. (PMID:28628939)
- Study identified distinct biochemical mechanisms of pathogenic human GNAO1 mutations that may improve the understanding of the heterogeneous clinical spectrum of GNAO1-associated epilepsy and movement disorders. Furthermore, these results also carry significant implications for personalized therapeutics in GNAO1 encephalopathies. (PMID:28747448)
- GNAO1 transcription was inhibited by promoter hypermethylation, contributing to its low expression. It was further revealed that the silencing effect was regulated by methyltransferase 1 (DNMT1), and was further enhanced by transforming growth factor beta (TGF-beta). (PMID:29709639)
- Pediatric ependymoma: GNAO1, ASAH1, IMMT and IPO7 protein expression and 5-year prognosis correlation. (PMID:31505435)
- Identification of functional cooperative mutations of GNAO1 in human acute lymphoblastic leukemia. (PMID:32898863)
- GNAO1 organizes the cytoskeletal remodeling and firing of developing neurons. (PMID:33107105)
- Structures of the glucocorticoid-bound adhesion receptor GPR97-Go complex. (PMID:33408414)
- Clinical and molecular characterizations of 11 new patients with type 1 Feingold syndrome: Proposal for selecting diagnostic criteria and further genetic testing in patients with severe phenotype. (PMID:33442900)
- GNAO1 as a Novel Predictive Biomarker for Late Relapse in Hepatocellular Carcinoma. (PMID:34900204)
- G0S2 regulates innate immunity in Kawasaki disease via lncRNA HSD11B1-AS1. (PMID:35292727)
- Highlighting the Dystonic Phenotype Related to GNAO1. (PMID:35722775)
- Visual Function in Children with GNAO1-Related Encephalopathy. (PMID:36980817)
- Dystonic Cerebral Palsy Phenotype Due to GNAO1 Variant Responsive to Levodopa. (PMID:37034444)
- Genotype-phenotype correlation and treatment effects in young patients with GNAO1-associated disorders. (PMID:37225406)
- Clinical Cases and the Molecular Profiling of a Novel Childhood Encephalopathy-Causing GNAO1 Mutation P170R. (PMID:37887313)
- AAV9-Mediated Intrastriatal Delivery of GNAO1 Reduces Hyperlocomotion in Gnao1 Heterozygous R209H Mutant Mice. (PMID:38866563)
- Neomorphic Galphao mutations gain interaction with Ric8 proteins in GNAO1 encephalopathies. (PMID:38874642)
- Clinical and Molecular Profiling in GNAO1 Permits Phenotype-Genotype Correlation. (PMID:38881224)
- CircGNAO1 suppresses hepatocellular carcinoma progression and metastasis via sponging miR-182-5p and regulating FOXO1 expression. (PMID:39098231)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gnao1a | ENSDARG00000016676 |
| danio_rerio | gnao1b | ENSDARG00000036058 |
| mus_musculus | Gnao1 | ENSMUSG00000031748 |
| drosophila_melanogaster | Galphao | FBGN0001122 |
| caenorhabditis_elegans | goa-1 | WBGENE00001648 |
Paralogs (15): GNA15 (ENSG00000060558), GNAI3 (ENSG00000065135), GNAS (ENSG00000087460), GNA11 (ENSG00000088256), GNAT1 (ENSG00000114349), GNAI2 (ENSG00000114353), GNA13 (ENSG00000120063), GNAI1 (ENSG00000127955), GNAZ (ENSG00000128266), GNAT2 (ENSG00000134183), GNAL (ENSG00000141404), GNA12 (ENSG00000146535), GNA14 (ENSG00000156049), GNAQ (ENSG00000156052), GNAT3 (ENSG00000214415)
Protein
Protein identifiers
Guanine nucleotide-binding protein G(o) subunit alpha — P09471 (reviewed: P09471)
All UniProt accessions (13): P09471, A0A087WTB6, A0A1W2PP38, A0A1W2PP87, A0A1W2PPG6, A0A1W2PQ24, A0A1W2PQK2, A0A1W2PRE1, A0A1W2PRJ7, A0A1W2PS82, A0A6Q8PGR1, H3BNR5, H3BTM2
UniProt curated annotations — full annotation on UniProt →
Function. Guanine nucleotide-binding proteins (G proteins) function as transducers downstream of G protein-coupled receptors (GPCRs) in numerous signaling cascades. The alpha chain contains the guanine nucleotide binding site and alternates between an active, GTP-bound state and an inactive, GDP-bound state. Signaling by an activated GPCR promotes GDP release and GTP binding. The alpha subunit has a low GTPase activity that converts bound GTP to GDP, thereby terminating the signal. Both GDP release and GTP hydrolysis are modulated by numerous regulatory proteins. Signaling is mediated via effector proteins, such as adenylate cyclase. Inhibits adenylate cyclase activity, leading to decreased intracellular cAMP levels.
Subunit / interactions. G proteins are composed of 3 units; alpha, beta and gamma. The alpha chain contains the guanine nucleotide binding site. Forms a complex with GNB1 and GNG3. Interacts with RGS14. Interacts with RGS16. Interacts with RGS19. Interacts (when palmitoylated) with ADGRG3.
Subcellular location. Cell membrane. Membrane.
Post-translational modifications. Histaminylated at Gln-205 residues by TGM2. Palmitoylated at Cys-351, leading to binding to ADGRG3.
Disease relevance. Developmental and epileptic encephalopathy 17 (DEE17) [MIM:615473] A severe neurologic disorder characterized by onset of intractable seizures in the first weeks or months of life and usually associated with EEG abnormalities. Affected infants have very poor psychomotor development and may have brain abnormalities, such as cerebral atrophy or thin corpus callosum. Some patients may show involuntary movements. The disease is caused by variants affecting the gene represented in this entry. Neurodevelopmental disorder with involuntary movements (NEDIM) [MIM:617493] A neurodevelopmental disorder manifesting with a wide range of clinical symptoms. Clinical features range from severe motor and cognitive impairment with marked choreoathetosis, self-injurious behavior and epileptic encephalopathy, to a milder phenotype featuring moderate developmental delay associated with complex stereotypies, mainly facial dyskinesia, and mild epilepsy. Hyperkinetic movements are often exacerbated by specific triggers, such as illness, emotion and high ambient temperature. Some patients have brain abnormalities, such as cerebral atrophy or thin corpus callosum. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. The GTPase activity is promoted by GTPAse activators, such as RGS14, RGS16 and RGS19.
Similarity. Belongs to the G-alpha family. G(i/o/t/z) subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P09471-1 | Alpha-1 | yes |
| P09471-2 | Alpha-2 |
RefSeq proteins (2): NP_066268, NP_620073 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001019 | Gprotein_alpha_su | Family |
| IPR001408 | Gprotein_alpha_I | Family |
| IPR011025 | GproteinA_insert | Homologous_superfamily |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
Pfam: PF00503
Catalyzed reactions (Rhea), 1 shown:
- GTP + H2O = GDP + phosphate + H(+) (RHEA:19669)
UniProt features (82 total): sequence variant 17, helix 16, binding site 14, strand 11, region of interest 5, turn 5, modified residue 3, lipid moiety-binding region 3, sequence conflict 3, initiator methionine 1, chain 1, domain 1, splice variant 1, mutagenesis site 1
Structure
Experimental structures (PDB)
86 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9BSB | ELECTRON MICROSCOPY | 2.32 |
| 9VJE | ELECTRON MICROSCOPY | 2.47 |
| 9K20 | ELECTRON MICROSCOPY | 2.65 |
| 9VJ5 | ELECTRON MICROSCOPY | 2.69 |
| 8E9X | ELECTRON MICROSCOPY | 2.7 |
| 9PLO | ELECTRON MICROSCOPY | 2.74 |
| 9VNF | ELECTRON MICROSCOPY | 2.74 |
| 8YN7 | ELECTRON MICROSCOPY | 2.77 |
| 8YN8 | ELECTRON MICROSCOPY | 2.77 |
| 9KVP | ELECTRON MICROSCOPY | 2.79 |
| 7W2Z | ELECTRON MICROSCOPY | 2.8 |
| 8XXH | ELECTRON MICROSCOPY | 2.8 |
| 8DZQ | ELECTRON MICROSCOPY | 2.82 |
| 9VMY | ELECTRON MICROSCOPY | 2.86 |
| 8FN1 | ELECTRON MICROSCOPY | 2.88 |
| 8I95 | ELECTRON MICROSCOPY | 2.88 |
| 9KV6 | ELECTRON MICROSCOPY | 2.88 |
| 6K41 | ELECTRON MICROSCOPY | 2.9 |
| 7D77 | ELECTRON MICROSCOPY | 2.9 |
| 9DYE | ELECTRON MICROSCOPY | 2.9 |
| 9VAU | ELECTRON MICROSCOPY | 2.95 |
| 9DYD | ELECTRON MICROSCOPY | 2.96 |
| 8XX6 | ELECTRON MICROSCOPY | 2.99 |
| 9VAV | ELECTRON MICROSCOPY | 2.99 |
| 7EJ8 | ELECTRON MICROSCOPY | 3 |
| 8XYK | ELECTRON MICROSCOPY | 3.03 |
| 9F33 | ELECTRON MICROSCOPY | 3.05 |
| 8XWV | ELECTRON MICROSCOPY | 3.07 |
| 8Y0N | ELECTRON MICROSCOPY | 3.07 |
| 9KUG | ELECTRON MICROSCOPY | 3.07 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P09471-F1 | 94.67 | 0.88 |
Antibody-complex structures (SAbDab): 62 — 6K41, 6OIK, 6WWZ, 7D77, 7EJ0, 7EJ8, 7EJA, 7EJK, 7QVM, 7T8X, 7T90, 7T94, 7T96, 7W2Z, 7W6P, 7W7E, 7XJJ, 7Y24, 8DZQ, 8E9X, 8FN1, 8HPT, 8HQC, 8I95, 8I97 (+37 more)
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (14): 47; 47; 48; 152; 176; 177; 178; 179; 182; 270; 273; 325 …
Post-translational modifications (6): 179, 205, 351, 2, 3, 351
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 351 | strong loss of binding to adgrg3. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-4086398 | Ca2+ pathway |
MSigDB gene sets: 505 (showing top):
AHRARNT_01, GNF2_RTN1, CREL_01, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, PID_S1P_S1P1_PATHWAY, BENPORATH_ES_WITH_H3K27ME3, HNF3ALPHA_Q6, GOBP_BEHAVIOR, GOBP_CIRCULATORY_SYSTEM_PROCESS, LFA1_Q6, TTTGTAG_MIR520D, GOBP_INSULIN_SECRETION, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_REGULATION_OF_HORMONE_LEVELS
GO Biological Process (12): obsolete vesicle docking involved in exocytosis (GO:0006904), muscle contraction (GO:0006936), adenylate cyclase-modulating G protein-coupled receptor signaling pathway (GO:0007188), adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (GO:0007193), adenylate cyclase-inhibiting serotonin receptor signaling pathway (GO:0007198), G protein-coupled dopamine receptor signaling pathway (GO:0007212), locomotory behavior (GO:0007626), regulation of heart contraction (GO:0008016), negative regulation of insulin secretion (GO:0046676), postsynaptic modulation of chemical synaptic transmission (GO:0099170), signal transduction (GO:0007165), G protein-coupled receptor signaling pathway (GO:0007186)
GO Molecular Function (13): GTPase activity (GO:0003924), G protein activity (GO:0003925), GTP binding (GO:0005525), G-protein beta/gamma-subunit complex binding (GO:0031683), G protein-coupled serotonin receptor binding (GO:0031821), mu-type opioid receptor binding (GO:0031852), metal ion binding (GO:0046872), corticotropin-releasing hormone receptor 1 binding (GO:0051430), nucleotide binding (GO:0000166), protein binding (GO:0005515), adenylate cyclase regulator activity (GO:0010854), hydrolase activity (GO:0016787), guanyl nucleotide binding (GO:0019001)
GO Cellular Component (11): cytoplasm (GO:0005737), heterotrimeric G-protein complex (GO:0005834), plasma membrane (GO:0005886), dendrite (GO:0030425), presynaptic membrane (GO:0042734), cell body (GO:0044297), postsynaptic membrane (GO:0045211), parallel fiber to Purkinje cell synapse (GO:0098688), glutamatergic synapse (GO:0098978), GABA-ergic synapse (GO:0098982), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Beta-catenin independent WNT signaling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| adenylate cyclase activity | 2 |
| G protein-coupled receptor signaling pathway | 2 |
| postsynapse | 2 |
| synaptic membrane | 2 |
| synapse | 2 |
| muscle system process | 1 |
| adenylate cyclase-modulating G protein-coupled receptor signaling pathway | 1 |
| adenylate cyclase inhibitor activity | 1 |
| Gi/o-coupled serotonin receptor activity | 1 |
| adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | 1 |
| G protein-coupled serotonin receptor signaling pathway | 1 |
| synaptic transmission, dopaminergic | 1 |
| cellular response to dopamine | 1 |
| behavior | 1 |
| heart contraction | 1 |
| regulation of blood circulation | 1 |
| insulin secretion | 1 |
| negative regulation of protein secretion | 1 |
| regulation of insulin secretion | 1 |
| negative regulation of peptide hormone secretion | 1 |
| modulation of chemical synaptic transmission | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| GTPase activity | 1 |
| molecular function regulator activity | 1 |
| guanyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| protein-containing complex binding | 1 |
| G protein-coupled receptor binding | 1 |
| opioid receptor binding | 1 |
| cation binding | 1 |
| corticotropin-releasing hormone receptor binding | 1 |
| nucleoside phosphate binding | 1 |
Protein interactions and networks
STRING
3224 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GNAO1 | RGS4 | P49798 | 971 |
| GNAO1 | RGS7 | P49802 | 970 |
| GNAO1 | RGS16 | O15492 | 952 |
| GNAO1 | DRD2 | P14416 | 911 |
| GNAO1 | RGS8 | P57771 | 854 |
| GNAO1 | AVPR2 | P30518 | 838 |
| GNAO1 | RIC8A | Q9NPQ8 | 786 |
| GNAO1 | GNB5 | O14775 | 768 |
| GNAO1 | GNB4 | Q9HAV0 | 762 |
| GNAO1 | RGS10 | O43665 | 736 |
| GNAO1 | RGS14 | O43566 | 734 |
| GNAO1 | RGS6 | P49758 | 733 |
| GNAO1 | GNB1 | P04697 | 731 |
| GNAO1 | SUCLG1 | P53597 | 731 |
| GNAO1 | PLCB2 | Q00722 | 715 |
IntAct
93 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED4 | MED19 | psi-mi:“MI:0914”(association) | 0.900 |
| GNAO1 | VCP | psi-mi:“MI:0915”(physical association) | 0.670 |
| GNAO1 | HTT | psi-mi:“MI:0915”(physical association) | 0.670 |
| GNAI3 | RGS12 | psi-mi:“MI:0914”(association) | 0.640 |
| GNG8 | GNB5 | psi-mi:“MI:0914”(association) | 0.640 |
| Haus4 | HAUS5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CALR | GNAO1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNAO1 | DLST | psi-mi:“MI:0915”(physical association) | 0.560 |
| ABCD3 | GNAO1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNAO1 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| GNAO1 | RPS6KA3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNAO1 | TGFBR2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNAO1 | CBX5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNAO1 | NEK7 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (120): GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS), GNAO1 (Co-fractionation), GNAO1 (Affinity Capture-MS), GNAO1 (Affinity Capture-MS)
ESM2 similar proteins: B0XRA0, B2RSH2, O13055, O13315, O42784, O74227, O74259, P04695, P04897, P04899, P08239, P08752, P08753, P08754, P09471, P10825, P11488, P16378, P18872, P20353, P20612, P27044, P27045, P30676, P30682, P30683, P38400, P38401, P38402, P38403, P38404, P38407, P50146, P50147, P51875, P51876, P51877, P59215, P59216, P63096
Diamond homologs: A2Y3B5, A8MTJ3, B0XRA0, B2RSH2, O04278, O04279, O13055, O13315, O14438, O15976, O42784, O74227, O74259, O95837, P04695, P04696, P04897, P04899, P08239, P08752, P08753, P08754, P09471, P0C7Q4, P0CN96, P0CN97, P10824, P10825, P11488, P16378, P16894, P18064, P18872, P19087, P20353, P20612, P26981, P27044, P27045, P28051
SIGNOR signaling
103 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CHRM2 | up-regulates | GNAO1 | |
| GNAO1 | up-regulates | TAOK1 | |
| GNAO1 | up-regulates | TAOK2 | |
| GNAO1 | “up-regulates activity” | NDN | |
| CNR1 | “up-regulates activity” | GNAO1 | |
| P2RY13 | “up-regulates activity” | GNAO1 | binding |
| CHRM2 | “up-regulates activity” | GNAO1 | binding |
| CHRM4 | “up-regulates activity” | GNAO1 | binding |
| GALR1 | “up-regulates activity” | GNAO1 | binding |
| GPR34 | “up-regulates activity” | GNAO1 | binding |
| HRH3 | “up-regulates activity” | GNAO1 | binding |
| SSTR5 | “up-regulates activity” | GNAO1 | binding |
| LTB4R | “up-regulates activity” | GNAO1 | binding |
| GPR17 | “up-regulates activity” | GNAO1 | binding |
| HTR1A | “up-regulates activity” | GNAO1 | binding |
| PRLHR | “up-regulates activity” | GNAO1 | binding |
| BDKRB2 | “up-regulates activity” | GNAO1 | binding |
| LPAR1 | “up-regulates activity” | GNAO1 | binding |
| ADORA1 | “up-regulates activity” | GNAO1 | binding |
| ADRA2A | “up-regulates activity” | GNAO1 | binding |
| ADRA2C | “up-regulates activity” | GNAO1 | binding |
| CNR2 | “up-regulates activity” | GNAO1 | binding |
| DRD2 | “up-regulates activity” | GNAO1 | binding |
| DRD3 | “up-regulates activity” | GNAO1 | binding |
| DRD4 | “up-regulates activity” | GNAO1 | binding |
| GPR84 | “up-regulates activity” | GNAO1 | binding |
| HTR1E | “up-regulates activity” | GNAO1 | binding |
| MTNR1A | “up-regulates activity” | GNAO1 | binding |
| MTNR1B | “up-regulates activity” | GNAO1 | binding |
| NPFFR1 | “up-regulates activity” | GNAO1 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 84 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Prostacyclin signalling through prostacyclin receptor | 7 | 65.7× | 4e-10 |
| ADP signalling through P2Y purinoceptor 12 | 8 | 62.1× | 1e-10 |
| G beta:gamma signalling through BTK | 6 | 59.5× | 2e-08 |
| G beta:gamma signalling through PLC beta | 6 | 53.5× | 3e-08 |
| G beta:gamma signalling through CDC42 | 6 | 53.5× | 3e-08 |
| Presynaptic function of Kainate receptors | 6 | 51.0× | 4e-08 |
| Adrenaline,noradrenaline inhibits insulin secretion | 8 | 49.2× | 3e-10 |
| G-protein activation | 6 | 44.6× | 8e-08 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| G protein-coupled receptor signaling pathway | 13 | 6.0× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
588 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 50 |
| Likely pathogenic | 41 |
| Uncertain significance | 171 |
| Likely benign | 219 |
| Benign | 44 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1012170 | NM_020988.3(GNAO1):c.136A>G (p.Lys46Glu) | Pathogenic |
| 1012172 | NM_020988.3(GNAO1):c.470T>C (p.Leu157Pro) | Pathogenic |
| 1012173 | NM_020988.3(GNAO1):c.810C>A (p.Asn270Lys) | Pathogenic |
| 1016767 | NM_020988.3(GNAO1):c.759dup (p.Ile254fs) | Pathogenic |
| 1064445 | NM_020988.3(GNAO1):c.723+2T>A | Pathogenic |
| 1319183 | NM_020988.3(GNAO1):c.608G>A (p.Gly203Glu) | Pathogenic |
| 1374497 | NM_020988.3(GNAO1):c.124G>A (p.Gly42Arg) | Pathogenic |
| 1389555 | NM_020988.3(GNAO1):c.155A>G (p.Gln52Arg) | Pathogenic |
| 1432250 | NM_020988.3(GNAO1):c.813G>T (p.Lys271Asn) | Pathogenic |
| 1446069 | NC_000016.9:g.(?56226148)(56226548_?)del | Pathogenic |
| 1453190 | NM_020988.3(GNAO1):c.602A>T (p.Asp201Val) | Pathogenic |
| 1453470 | NM_020988.3(GNAO1):c.617G>T (p.Arg206Leu) | Pathogenic |
| 1459091 | NM_020988.3(GNAO1):c.596T>C (p.Leu199Pro) | Pathogenic |
| 1469197 | NM_020988.3(GNAO1):c.1023CAT[2] (p.Ile344del) | Pathogenic |
| 1685853 | NM_020988.3(GNAO1):c.610G>C (p.Gly204Arg) | Pathogenic |
| 1701291 | NM_020988.3(GNAO1):c.736_738delinsAAA (p.Glu246Lys) | Pathogenic |
| 1802165 | NM_020988.3(GNAO1):c.17G>T (p.Ser6Ile) | Pathogenic |
| 1802972 | NM_020988.3(GNAO1):c.119G>C (p.Gly40Ala) | Pathogenic |
| 208677 | NM_020988.3(GNAO1):c.626G>A (p.Arg209His) | Pathogenic |
| 208777 | NM_020988.3(GNAO1):c.736G>A (p.Glu246Lys) | Pathogenic |
| 2152262 | NM_020988.3(GNAO1):c.155A>C (p.Gln52Pro) | Pathogenic |
| 2499605 | NM_020988.3(GNAO1):c.124G>C (p.Gly42Arg) | Pathogenic |
| 2578317 | NM_020988.3(GNAO1):c.723+1G>T | Pathogenic |
| 265350 | NM_020988.3(GNAO1):c.625C>T (p.Arg209Cys) | Pathogenic |
| 2705877 | NM_020988.3(GNAO1):c.398_402dup (p.Ser135fs) | Pathogenic |
| 2759489 | NM_020988.3(GNAO1):c.631A>C (p.Lys211Gln) | Pathogenic |
| 280526 | NM_020988.3(GNAO1):c.118G>T (p.Gly40Trp) | Pathogenic |
| 2824114 | NM_020988.3(GNAO1):c.133G>T (p.Gly45Ter) | Pathogenic |
| 2825827 | NM_020988.3(GNAO1):c.807_808delinsAC (p.Asn270His) | Pathogenic |
| 3243367 | NC_000016.9:g.(?56385276)(56388965_?)del | Pathogenic |
SpliceAI
2381 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:56192349:GCTCG:G | donor_gain | 1.0000 |
| 16:56192354:G:GG | donor_gain | 1.0000 |
| 16:56192617:G:GG | donor_gain | 1.0000 |
| 16:56275929:A:AG | acceptor_gain | 1.0000 |
| 16:56275930:G:GG | acceptor_gain | 1.0000 |
| 16:56275930:GGATC:G | acceptor_gain | 1.0000 |
| 16:56276056:GTGA:G | donor_gain | 1.0000 |
| 16:56276057:TGAT:T | donor_gain | 1.0000 |
| 16:56276059:A:AG | donor_gain | 1.0000 |
| 16:56276068:GAAAG:G | donor_gain | 1.0000 |
| 16:56276069:AAAGG:A | donor_loss | 1.0000 |
| 16:56276070:AAGGT:A | donor_loss | 1.0000 |
| 16:56276071:AGG:A | donor_loss | 1.0000 |
| 16:56276072:GGTAG:G | donor_loss | 1.0000 |
| 16:56276074:T:A | donor_loss | 1.0000 |
| 16:56328625:TCACA:T | acceptor_loss | 1.0000 |
| 16:56328626:CACAG:C | acceptor_loss | 1.0000 |
| 16:56328627:ACAGG:A | acceptor_loss | 1.0000 |
| 16:56328628:CAGGC:C | acceptor_loss | 1.0000 |
| 16:56328629:A:AG | acceptor_gain | 1.0000 |
| 16:56328630:G:GA | acceptor_loss | 1.0000 |
| 16:56328630:G:GG | acceptor_gain | 1.0000 |
| 16:56328630:GGCT:G | acceptor_gain | 1.0000 |
| 16:56328762:G:GT | donor_gain | 1.0000 |
| 16:56328788:AATA:A | donor_gain | 1.0000 |
| 16:56328789:ATA:A | donor_gain | 1.0000 |
| 16:56328790:TA:T | donor_gain | 1.0000 |
| 16:56328792:G:GG | donor_gain | 1.0000 |
| 16:56334857:GGTG:G | donor_loss | 1.0000 |
| 16:56334858:G:C | donor_loss | 1.0000 |
AlphaMissense
2367 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:56192345:T:A | L37H | 1.000 |
| 16:56192345:T:C | L37P | 1.000 |
| 16:56192351:T:A | L39H | 1.000 |
| 16:56192353:G:A | G40R | 1.000 |
| 16:56192353:G:C | G40R | 1.000 |
| 16:56192353:G:T | G40W | 1.000 |
| 16:56192574:G:A | G40E | 1.000 |
| 16:56192574:G:T | G40V | 1.000 |
| 16:56192585:T:C | S44P | 1.000 |
| 16:56192588:G:A | G45R | 1.000 |
| 16:56192588:G:C | G45R | 1.000 |
| 16:56192589:G:A | G45E | 1.000 |
| 16:56192589:G:C | G45A | 1.000 |
| 16:56192589:G:T | G45V | 1.000 |
| 16:56192591:A:C | K46Q | 1.000 |
| 16:56192592:A:T | K46I | 1.000 |
| 16:56192593:A:C | K46N | 1.000 |
| 16:56192593:A:T | K46N | 1.000 |
| 16:56192594:A:C | S47R | 1.000 |
| 16:56192594:A:T | S47C | 1.000 |
| 16:56192595:G:T | S47I | 1.000 |
| 16:56192596:C:A | S47R | 1.000 |
| 16:56192596:C:G | S47R | 1.000 |
| 16:56192598:C:T | T48I | 1.000 |
| 16:56192611:G:C | Q52H | 1.000 |
| 16:56192611:G:T | Q52H | 1.000 |
| 16:56334785:A:T | D174V | 1.000 |
| 16:56334791:T:A | L176H | 1.000 |
| 16:56334791:T:C | L176P | 1.000 |
| 16:56334794:G:C | R177P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000037397 (16:56326565 G>A), RS1000068281 (16:56209280 A>G), RS1000069078 (16:56312808 A>C,G), RS1000093696 (16:56344479 C>T), RS1000113975 (16:56271052 A>G), RS1000153111 (16:56350055 G>A), RS1000156689 (16:56257147 G>A), RS1000162231 (16:56240463 T>G), RS1000179290 (16:56195020 T>C,G), RS1000207238 (16:56198711 A>G), RS1000297074 (16:56247068 A>G), RS1000365647 (16:56294361 A>G), RS1000385036 (16:56205856 G>A), RS1000425910 (16:56300451 C>G,T), RS1000441413 (16:56349833 T>C,G)
Disease associations
OMIM: gene MIM:139311 | disease phenotypes: MIM:615473, MIM:617493, MIM:308350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental and epileptic encephalopathy, 17 | Definitive | Autosomal dominant |
| movement disorder | Definitive | Autosomal dominant |
| genetic developmental and epileptic encephalopathy | Definitive | Autosomal dominant |
| neurodevelopmental disorder with involuntary movements | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| movement disorder | Definitive | AD |
| genetic developmental and epileptic encephalopathy | Definitive | AD |
Mondo (11): early-infantile DEE (MONDO:0800491), developmental and epileptic encephalopathy, 17 (MONDO:0014199), neurodevelopmental disorder with involuntary movements (MONDO:0060491), developmental and epileptic encephalopathy (MONDO:0100620), congenital nervous system disorder (MONDO:0002320), genetic developmental and epileptic encephalopathy (MONDO:0100062), movement disorder (MONDO:0005395), choreatic disease (MONDO:0001595), intellectual disability (MONDO:0001071), developmental and epileptic encephalopathy, 1 (MONDO:0010632), microcephaly (MONDO:0001149)
Orphanet (6): Early infantile developmental and epileptic encephalopathy (Orphanet:1934), GNAO1-related developmental delay-seizures-movement disorder spectrum (Orphanet:592564), Benign hereditary chorea (Orphanet:1429), Rare genetic intellectual disability (Orphanet:183757), Early myoclonic encephalopathy (Orphanet:1935), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
81 total (30 of 81 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000054 | Micropenis |
| HP:0000070 | Ureterocele |
| HP:0000110 | Renal dysplasia |
| HP:0000175 | Cleft palate |
| HP:0000252 | Microcephaly |
| HP:0000340 | Sloping forehead |
| HP:0000463 | Anteverted nares |
| HP:0000486 | Strabismus |
| HP:0000729 | Autistic behavior |
| HP:0000752 | Hyperactivity |
| HP:0000826 | Precocious puberty |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001254 | Lethargy |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001266 | Choreoathetosis |
| HP:0001272 | Cerebellar atrophy |
| HP:0001290 | Generalized hypotonia |
| HP:0001302 | Pachygyria |
| HP:0001332 | Dystonia |
| HP:0001336 | Myoclonus |
| HP:0001337 | Tremor |
| HP:0001344 | Absent speech |
| HP:0001347 | Hyperreflexia |
| HP:0001500 | Broad finger |
| HP:0001508 | Failure to thrive |
| HP:0001537 | Umbilical hernia |
| HP:0001629 | Ventricular septal defect |
GWAS associations
14 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005757_3 | Dimensional psychopathology (Positive) | 4.000000e-07 |
| GCST007096_223 | Pulse pressure | 2.000000e-09 |
| GCST007268_53 | Diastolic blood pressure | 2.000000e-08 |
| GCST007393_8 | Mitochondrial DNA copy number | 8.000000e-07 |
| GCST007559_23 | Sleep duration (short sleep) | 2.000000e-08 |
| GCST007565_133 | Morning person | 6.000000e-26 |
| GCST007576_22 | Chronotype | 6.000000e-26 |
| GCST007576_403 | Chronotype | 2.000000e-10 |
| GCST009391_1808 | Metabolite levels | 9.000000e-06 |
| GCST010166_2 | Cardioembolic stroke (CCSp classification) | 5.000000e-08 |
| GCST010241_307 | Apolipoprotein A1 levels | 2.000000e-08 |
| GCST010241_332 | Apolipoprotein A1 levels | 3.000000e-08 |
| GCST010242_152 | HDL cholesterol levels | 5.000000e-12 |
| GCST011494_71 | Daytime nap | 6.000000e-17 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009097 | positive domain measurement |
| EFO:0005763 | pulse pressure measurement |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006312 | mitochondrial DNA measurement |
| EFO:0008328 | chronotype measurement |
| EFO:0010403 | triacylglycerol 48:0 measurement |
| EFO:1001976 | cardioembolic stroke |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0007828 | daytime rest measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002819 | Chorea | C10.228.662.262.249; C10.597.350.250; C23.888.592.350.250 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D009069 | Movement Disorders | C10.228.662 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4742 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
1 measured of 5 human assays (5 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| 3-chloranyl-N-(3-morpholin-4-ylpropyl)-6-nitro-1-benzothiophene-2-carboxamide | EC50 | 950 nM |
ChEMBL bioactivities
8 potent at pChembl≥5 of 28 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.43 | EC50 | 3700 | nM | CHEMBL536731 |
| 5.26 | EC50 | 5500 | nM | CHEMBL537639 |
| 5.25 | EC50 | 5600 | nM | CHEMBL536963 |
| 5.21 | EC50 | 6200 | nM | CHEMBL3216194 |
| 5.21 | EC50 | 6100 | nM | CHEMBL537413 |
| 5.21 | EC50 | 6100 | nM | CHEMBL559378 |
| 5.09 | EC50 | 8200 | nM | CHEMBL536499 |
| 5.00 | EC50 | 1.01e+04 | nM | CHEMBL194324 |
PubChem BioAssay actives
7 with measured affinity, of 72 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-pentadecylpiperazin-1-amine;hydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 3.7000 | uM |
| 1-(2-formamidoethyl)-N-pentadecylpiperidine-4-carboxamide;hydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 5.5000 | uM |
| 1-(4-piperidin-4-ylpiperidin-1-yl)pentadecan-1-one;hydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 5.6000 | uM |
| 1-[4-(2-piperidin-4-ylethyl)piperidin-1-yl]pentadecan-1-one;hydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 6.1000 | uM |
| N-pentadecylpiperazin-1-amine;hydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 6.1000 | uM |
| 1-pentadecyl-4-piperidin-4-ylpiperidine;dihydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 6.2000 | uM |
| N-pentadecylpiperidine-4-carboxamide;hydrochloride | 254630: Concentration required to stimulate binding of [35S]GTP-gamma-S, with G alpha o1 | ec50 | 8.2000 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Valproic Acid | affects expression, increases expression | 2 |
| 6,7-dimethoxy-2-(pyrrolidin-1-yl)-N-(5-(pyrrolidin-1-yl)pentyl)quinazolin-4-amine | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| pentanal | increases expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| LDN 193189 | increases expression, affects cotreatment | 1 |
| Air Pollutants, Occupational | increases expression | 1 |
| Aldehydes | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Atrazine | increases expression | 1 |
| Cadmium | decreases expression | 1 |
| Cannabidiol | affects cotreatment, decreases expression | 1 |
| Cocaine | decreases expression | 1 |
| Cuprizone | affects cotreatment, decreases expression, increases expression | 1 |
| Diazinon | increases methylation | 1 |
ChEMBL screening assays
12 unique, capped per target: 10 functional, 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1032494 | Functional | Activation of human Go protein alpha subunit expressed in Escherichia coli assessed as protein bound [35S]GTPgammaS levels at 100 uM by scintillation spectroscopy | [35S]GTP gamma S binding studies of amphiphilic drugs-activated Gi proteins: a caveat. — Bioorg Med Chem Lett |
| CHEMBL4191673 | Binding | Binding affinity to Galphao (unknown origin) assessed as change in melting temperature by differential scanning fluorimetry | Natural Products Discovered in a High-Throughput Screen Identified as Inhibitors of RGS17 and as Cytostatic and Cytotoxic Agents for Lung and Prostate Cancer Cell Lines. — J Nat Prod |
Clinical trials (associated diseases)
210 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01662414 | PHASE4 | COMPLETED | Effect of Undenatured Cysteine-Rich Whey Protein Isolate (HMS 90®) in Patients With Parkinson’s Disease |
| NCT04871464 | PHASE4 | UNKNOWN | Role and Mechanism of Probiotics in Improving Motor Symptoms in Mild to Moderate Parkinson’s Disease |
| NCT06710574 | PHASE4 | RECRUITING | Multimodal Image Technologies Investigate the Role and Mechanism of Probiotics in Improving RBD with Parkinson’s Disease |
| NCT01838278 | PHASE3 | UNKNOWN | Effectiveness of Vojta Therapy in Motor Development of Preterm Children |
| NCT06719141 | PHASE3 | RECRUITING | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathies (DEE) |
| NCT06908226 | PHASE3 | ENROLLING_BY_INVITATION | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathy (DEE) |
| NCT03347526 | PHASE3 | SUSPENDED | A Novel Approach to Infantile Spasms |
| NCT03421496 | PHASE3 | TERMINATED | A Study to Assess Cannabidiol Oral Solution With Vigabatrin as Initial Therapy in Participants With Infantile Spasms |
| NCT06412653 | PHASE2 | COMPLETED | Prospective Pilot Trial to Address Feasibility and Safety of Oral Zinc in GNAO1 Associated Disorders |
| NCT00001929 | PHASE2 | COMPLETED | Treatment of Parkinson’s Disease With Eliprodil |
| NCT00331669 | PHASE2 | UNKNOWN | Efficacy and Safety of Deep Brain Stimulation (DBS) of the Pallidal (GPi) in Patients With Tardive Dystonia |
| NCT00406029 | PHASE2 | COMPLETED | Dyskinesia in Parkinson’s Disease (Study P04501) |
| NCT00537017 | PHASE2 | COMPLETED | Follow Up Safety Study of SCH 420814 in Subjects With Parkinson’s Disease (P05175) |
| NCT00693472 | PHASE2 | TERMINATED | Study of Preladenant for the Treatment of Neuroleptic Induced Akathisia (Study P05145) |
| NCT01385592 | PHASE2 | COMPLETED | Evaluation of the Efficacy and Safety of AFQ056 in Parkinson’s Patients With L-dopa Induced Dyskinesias |
| NCT01491529 | PHASE2 | COMPLETED | Evaluation of the Efficacy and Safety of Modified Release AFQ056 in Parkinson’s Patients With L-dopa Induced Dyskinesias |
| NCT01491932 | PHASE2 | COMPLETED | Open-label, Long-term Safety Extension Study of AFQ056 in Parkinson’s Patients With L-dopa Induced Dyskinesias |
| NCT02500628 | PHASE2 | COMPLETED | Heart Rate Variability in Response to Metformin Challenge |
| NCT04536987 | PHASE2 | COMPLETED | Robot Therapy for Rehabilitation of Hand Movement After Stroke |
| NCT04912115 | PHASE2 | SUSPENDED | Randomized, Double-Blind, Active Placebo-Controlled Study of Ketamine to Treat Levodopa-Induced Dyskinesia |
| NCT05636852 | PHASE2 | TERMINATED | Altropane Dose for Imaging Patients With Suspected Parkinson’s Disease |
| NCT05626634 | PHASE2 | COMPLETED | Open-label, Long-term Safety Study of LP352 in Subjects With Developmental and Epileptic Encephalopathy |
| NCT04289467 | PHASE2 | RECRUITING | Treatment of Refractory Infantile Spasms With Fenfluramine |
| NCT00001663 | PHASE1 | COMPLETED | Treatment of Cortical Myoclonus With Repetitive Transcranial Magnetic Stimulation |
| NCT02589340 | PHASE1 | TERMINATED | Buspirone, in Combination With Amantadine, for the Treatment of Levodopa-induced Dyskinesia |
| NCT03065192 | PHASE1 | COMPLETED | Safety and Efficacy Study of VY-AADC01 for Advanced Parkinson’s Disease |
| NCT07232147 | PHASE1 | NOT_YET_RECRUITING | Clinical Research on Stem Cell Therapy for Parkinson’s Disease |
| NCT06700811 | PHASE1 | RECRUITING | Ketogenic Diet for Prevention of Epileptic Spasms in Infantile Onset Genetic Epilepsies |
| NCT04727970 | PHASE1 | COMPLETED | Tricaprilin Infantile Spasms Pilot Study |
| NCT00036296 | PHASE1/PHASE2 | COMPLETED | Effects of Talampanel on Patients With Advanced Parkinson’s Disease |
| NCT00037167 | PHASE1/PHASE2 | COMPLETED | Effects of Exercise Poles on Older Adults During Exercise Walking |
| NCT03295786 | PHASE1/PHASE2 | COMPLETED | Clinical Study to Test the Safety of CDNF by Brain Infusion in Patients With Parkinson’s Disease |
| NCT03775538 | PHASE1/PHASE2 | COMPLETED | Safety of CDNF by Brain Infusion in Patients With Parkinson’s Disease. Extension to HP-CD-CL-2002 Clinical Study |
| NCT04228653 | PHASE1/PHASE2 | UNKNOWN | Long-Term Follow-up Safety After DDS Implantation With/Without CDNF Infusions |
| NCT06948019 | PHASE1/PHASE2 | NOT_YET_RECRUITING | Safety and Efficacy of AAV9/AP4B1 (BFB-101) For Patients With AP4B1-related Hereditary Spastic Paraplegia Type 47 (SPG47) |
| NCT00500994 | EARLY_PHASE1 | COMPLETED | Neurobiology of Functional Movement Disorder and Non-Epileptic Seizures |
| NCT00001208 | Not specified | RECRUITING | Botulinum Toxin for the Treatment of Involuntary Movement Disorders |
| NCT00001252 | Not specified | RECRUITING | Human Movement Database |
| NCT00001324 | Not specified | COMPLETED | PET Scan to Study Brain Control of Human Movement |
| NCT00001361 | Not specified | COMPLETED | Magnetic Resonance Imaging Studies of Motor and Thought Processes |
Related Atlas pages
- Associated diseases: developmental and epileptic encephalopathy, 17, movement disorder, genetic developmental and epileptic encephalopathy, neurodevelopmental disorder with involuntary movements
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): choreatic disease, developmental and epileptic encephalopathy, developmental and epileptic encephalopathy, 1, developmental and epileptic encephalopathy, 17, early-infantile DEE, genetic developmental and epileptic encephalopathy, movement disorder, neurodevelopmental disorder with involuntary movements