GNE
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Also known as Uae1
Summary
GNE (glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, HGNC:23657) is a protein-coding gene on chromosome 9p13.3, encoding Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (Q9Y223). Bifunctional enzyme that possesses both UDP-N-acetylglucosamine 2-epimerase and N-acetylmannosamine kinase activities, and serves as the initiator of the biosynthetic pathway leading to the production of N-acetylneuraminic acid (NeuAc), a critical precursor in the synthesis of s….
The protein encoded by this gene is a bifunctional enzyme that initiates and regulates the biosynthesis of N-acetylneuraminic acid (NeuAc), a precursor of sialic acids. It is a rate-limiting enzyme in the sialic acid biosynthetic pathway. Sialic acid modification of cell surface molecules is crucial for their function in many biologic processes, including cell adhesion and signal transduction. Differential sialylation of cell surface molecules is also implicated in the tumorigenicity and metastatic behavior of malignant cells. Mutations in this gene are associated with sialuria, autosomal recessive inclusion body myopathy, and Nonaka myopathy. Alternative splicing of this gene results in transcript variants encoding different isoforms.
Source: NCBI Gene 10020 — RefSeq curated summary.
At a glance
- Gene–disease (curated): macrothrombocytopenia, isolated (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 1,253 total — 86 pathogenic, 105 likely-pathogenic
- Phenotypes (HPO): 105
- Druggable target: yes
- MANE Select transcript:
NM_005476
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23657 |
| Approved symbol | GNE |
| Name | glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase |
| Location | 9p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Uae1 |
| Ensembl gene | ENSG00000159921 |
| Ensembl biotype | protein_coding |
| OMIM | 603824 |
| Entrez | 10020 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 6 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000396594, ENST00000447283, ENST00000539208, ENST00000543356, ENST00000642385, ENST00000644762, ENST00000968451
RefSeq mRNA: 7 — MANE Select: NM_005476
NM_001128227, NM_001190383, NM_001190384, NM_001190388, NM_001374797, NM_001374798, NM_005476
CCDS: CCDS47965, CCDS55308, CCDS55309, CCDS55310, CCDS6602
Canonical transcript exons
ENST00000642385 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001048444 | 36229021 | 36229108 |
| ENSE00001048449 | 36227248 | 36227458 |
| ENSE00001048451 | 36233920 | 36234132 |
| ENSE00001048452 | 36223373 | 36223502 |
| ENSE00001048454 | 36236832 | 36236984 |
| ENSE00001048456 | 36219838 | 36220020 |
| ENSE00001048458 | 36218183 | 36218299 |
| ENSE00001048460 | 36222777 | 36222998 |
| ENSE00003658747 | 36246031 | 36246482 |
| ENSE00003679197 | 36249192 | 36249397 |
| ENSE00003822280 | 36258321 | 36258448 |
| ENSE00003903332 | 36214441 | 36217600 |
Expression profiles
Bgee: expression breadth ubiquitous, 286 present calls, max score 95.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.8502 / max 184.9992, expressed in 1763 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 100675 | 11.4277 | 1744 |
| 100679 | 0.9115 | 155 |
| 100674 | 0.5111 | 297 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of sigmoid colon | UBERON:0004993 | 95.87 | gold quality |
| colonic mucosa | UBERON:0000317 | 95.12 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 94.69 | gold quality |
| rectum | UBERON:0001052 | 94.31 | gold quality |
| liver | UBERON:0002107 | 94.24 | gold quality |
| trachea | UBERON:0003126 | 94.17 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 93.16 | gold quality |
| islet of Langerhans | UBERON:0000006 | 92.12 | gold quality |
| right lobe of liver | UBERON:0001114 | 91.96 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 91.21 | gold quality |
| cartilage tissue | UBERON:0002418 | 90.79 | gold quality |
| placenta | UBERON:0001987 | 89.07 | gold quality |
| renal medulla | UBERON:0000362 | 88.91 | gold quality |
| bronchial epithelial cell | CL:0002328 | 88.89 | gold quality |
| amniotic fluid | UBERON:0000173 | 88.22 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 87.97 | gold quality |
| bronchus | UBERON:0002185 | 87.86 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 87.73 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 87.06 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 86.88 | gold quality |
| cerebellar vermis | UBERON:0004720 | 86.66 | gold quality |
| transverse colon | UBERON:0001157 | 86.23 | gold quality |
| stromal cell of endometrium | CL:0002255 | 85.99 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 85.58 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 85.46 | gold quality |
| colonic epithelium | UBERON:0000397 | 85.37 | gold quality |
| large intestine | UBERON:0000059 | 85.32 | gold quality |
| tibia | UBERON:0000979 | 85.32 | gold quality |
| calcaneal tendon | UBERON:0003701 | 85.24 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 85.23 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.03 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
122 targeting GNE, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
Literature-anchored findings (GeneRIF, showing 40)
- Suggested as a candidate gene for a dominant syndrome that consists of inclusion body myopathy, Paget disease of bone, and dementia. (PMID:11749051)
- Two siblings heterozygous for the mutations A460V and V572L. Both sibs had Nonaka myopathy (OMIM 605820). (PMID:11916006)
- Three novel missense mutations in the UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE) gene have been detected in Japanese patients with distal myopathy with rimmed vacuoles (DMRV). (PMID:12177386)
- A novel mutation in the GNE gene and a linkage disequilibrium in Japanese pedigrees (PMID:12325084)
- Mutations spectrum of GNE in hereditary inclusion body myopathy sparing the quadriceps. (PMID:12497639)
- Expression studies indicate that GNE has a tissue-specific splice pattern, with four splice variants. (PMID:12921793)
- UDP-GlcNAc 2-epimerase/ManNAc kinase expression is regulated on the transcriptional level by DNA methylation (PMID:12927803)
- identified pathogenic mutations in the gene encoding the bifunctional enzyme UDP-GlcNAc 2-epimerase/ManNAc kinase, which catalyzes the initial two steps in the biosynthesis of sialic acid (PMID:14707127)
- These results indicate that although mutations in each of the two GNE domains result in an impaired enzymatic activity and the same HIBM phenotype, they do not equally affect sialylation of muscle cells. (PMID:15670773)
- A regulatory role for GNE shifting between the nuclear and the Golgi compartment is proposed. Further insight into GNE regulation may promote the understanding of hereditary inclusion body myopathy pathogenesis. (PMID:15748884)
- This report two unrelated Tunisian families with clinical and pathological features of AR HIBM. One distinct homozygous GNE missense mutation, M712T and L379H. (PMID:15833430)
- The cell-free system was validated for GNE activity, and it revealed that mutations in one enzymatic domain (in GNE, G135V, V216A, and R246W) affected not only that domain’s enzyme activity, but also the activity of the other domain. (PMID:15987957)
- Our study demonstrates the mutation spectrum of the GNE gene in Thai patients with distal myopathy with rimmed vacuoles (PMID:16810679)
- UDP-GlcNAc 2-epimerase/ManNAc 6-kinase has roles in modulation of sialyltransferase and BiP expression, GM3 and GD3 biosynthesis, proliferation, and apoptosis, and ERK1/2 phosphorylation (PMID:16847058)
- Two novel isoforms of human GNE, namely GNE2 and GNE3, which possess extended and deleted N-termini, respectively, were characterized. (PMID:17597614)
- Impaired UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE) enzyme function, not lack of expression, may be the key pathogenic factor in hereditary inclusion body myopathy (HIBM). (PMID:17698786)
- GNE mutation develops distal myopathy with rimmed vacuoles or hereditary inclusion body myopathy (PMID:17704511)
- Hereditary inclusion body myopathy with a novel mutation(P511H ) in the GNE gene associated with proximal leg weakness and necrotizing myopathy. (PMID:17718674)
- interaction of GNE with alpha-actinin 1 might point to its involvement in alpha-actinin mediated processes (PMID:18560563)
- inhibition of GNE-epimerase activity by CMP-sialic acid recovered after silencing demonstrating specificity of this effect. (PMID:18653764)
- Ceramide and its metabolite-induced cell death are regulated by the amount of sialic acid on the cell surface which in turn is regulated by mRNA expression of UDP-GlcNAc2-epimerase [uridine diphosphate-N-acetylglucosamine 2-epimerase] (PMID:18698493)
- These data therefore suggest a role of GNE1 in basic supply of cells with sialic acids, whereas splice variants GNE2 and GNE3 may have a function in fine-tuning of the sialic acid pathway. (PMID:18815882)
- the crystal structure of the kinase domain of GNE provides a structural basis for understanding disease-causing mutations and a model of hexameric wild type full length enzyme (PMID:19841673)
- in myonuclei seems to play some role in rimmed vacuole formation in distal myopathy with rimmed vacuoles (PMID:19845164)
- modeling of active sites of human GNE/MNK and identification of critical amino acid residues responsible for interactions with substrates. (PMID:19917666)
- Ten novel mutations were identified among nine patients, including four nonsense (p.R8X, p.W204X, p.Q436X, and p.S615X) and five missense (p.R71W, p.I142T, p.I298T, p.L556S, and p.E2G) variations spanning both the epimerase and kinase domains of GNE. (PMID:20059379)
- in 2 sibs with hereditary inclusion body myopathy,mutation analysis revealed compound heterozygous mutations in GNE gene:missense mutation (c.2086G >A; p.V696M) & novel frame shift mutation(c.1295delA; p.K432RfsX17)leading to a premature stopcodon (PMID:20175955)
- Based on our clinical experience and on the growing number of mutations reported, GNE mutations are not rare and should be ruled out in all patients presenting with a distal vacuolar myopathy, either autosomically recessive inherited or sporadic. (PMID:20300792)
- 2 Italian sisters affected with autosomal-recessive hereditary inclusion-body myopathy were compound heterozygous for a novel GNE mutation: a p.A310P amino acid change along with a p.R246W mutation on second allele both in the epimerase domain (PMID:20346669)
- two unrelated American hereditary inclusion body myopathy type 2 patients with novel GNE mutations (PMID:21131200)
- Stable knock-down of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE), the key enzyme in the sialic acid biosynthetic pathway, dramatically increases incorporation of N-acetylmannosamine analogues into glycoproteins. (PMID:21584309)
- The linkage scan excluded the majority of known myopathy genes, but one linkage peak included the gene GNE, in which mutations cause autosomal recessive hereditary inclusion body myopathy type 2 (HIBM2). (PMID:21708040)
- One nonsense mutation and 5 missense mutations wre identified in the GNE gene in chinese patients with distal myopathy with rimmed vacuoles. (PMID:21868336)
- Identification, tissue distribution, and molecular modeling of novel human isoforms of the key enzyme in sialic acid synthesis, UDP-GlcNAc 2-epimerase/ManNAc kinase (PMID:21910480)
- GNE up-regulation occurred predominantly in pancreatic cancer but also in other malignancies. (PMID:22049060)
- Eighteen mutations in GNE gene are identified in Chinese distal myopathy with rimmed vacuoles patients. (PMID:22196754)
- The results of this study defined a pattern of muscle involvement that appears peculiar to GNE myopathy (PMID:22231866)
- analysis of the crystal structures of the human N-acetylmannosamine kinase (MNK) domain of UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase in complexes with ManNAc (PMID:22343627)
- The results of this study indicated that no cases showed missense mutations in the GNE. (PMID:22349865)
- Participants with homozygous mutations in the N-acetylmannosamine kinase domain have an earlier disease onset than heterozygous participants with mutations in the uridine diphosphate-N-acetylglucosamine 2-epimerase and N-acetylmannosamine kinase domains. (PMID:22507750)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gne | ENSDARG00000099771 |
| mus_musculus | Gne | ENSMUSG00000028479 |
| rattus_norvegicus | Gne | ENSRNOG00000014365 |
Protein
Protein identifiers
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase — Q9Y223 (reviewed: Q9Y223)
Alternative names: UDP-GlcNAc-2-epimerase/ManAc kinase
All UniProt accessions (2): Q9Y223, A0A7I2SU25
UniProt curated annotations — full annotation on UniProt →
Function. Bifunctional enzyme that possesses both UDP-N-acetylglucosamine 2-epimerase and N-acetylmannosamine kinase activities, and serves as the initiator of the biosynthetic pathway leading to the production of N-acetylneuraminic acid (NeuAc), a critical precursor in the synthesis of sialic acids. By catalyzing this pivotal and rate-limiting step in sialic acid biosynthesis, this enzyme assumes a pivotal role in governing the regulation of cell surface sialylation, playing a role in embryonic angiogenesis. Sialic acids represent a category of negatively charged sugars that reside on the surface of cells as terminal components of glycoconjugates and mediate important functions in various cellular processes, including cell adhesion, signal transduction, and cellular recognition.
Subunit / interactions. Homodimer. Homotetramer. Homohexamer. The hexameric form exhibits both enzyme activities, whereas the dimeric form only catalyzes the phosphorylation of N-acyl-D-mannosamine.
Subcellular location. Cytoplasm. Cytosol.
Tissue specificity. Highest expression in liver and placenta. Also found in heart, brain, lung, kidney, skeletal muscle and pancreas. Isoform 1 is expressed in heart, brain, kidney, liver, placenta, lung, spleen, pancreas, skeletal muscle and colon. Isoform 2 is expressed mainly in placenta, but also in brain, kidney, liver, lung, pancreas and colon. Isoform 3 is expressed at low level in kidney, liver, placenta and colon.
Post-translational modifications. Phosphorylated. Phosphorylation by PKC activates the UDP-N-acetylglucosamine 2-epimerase activity.
Disease relevance. Sialuria (SIALURIA) [MIM:269921] In sialuria, free sialic acid accumulates in the cytoplasm and gram quantities of neuraminic acid are secreted in the urine. The metabolic defect involves lack of feedback inhibition of UDP-GlcNAc 2-epimerase by CMP-Neu5Ac, resulting in constitutive overproduction of free Neu5Ac. Clinical features include variable degrees of developmental delay, coarse facial features and hepatomegaly. Sialuria inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry. Nonaka myopathy (NM) [MIM:605820] An autosomal recessive myopathy characterized by early adult onset and progressive distal muscle weakness that preferentially affects the anterior tibial muscles, usually sparing the quadriceps femoris. Some individuals may have involvement of the upper limbs or proximal muscles. Muscle biopsy reveals presence of rimmed vacuoles. The disease is caused by variants affecting the gene represented in this entry. Thrombocytopenia 12 with or without myopathy (THC12) [MIM:620757] A form of thrombocytopenia, a hematologic disorder defined by a decrease in the number of platelets in circulating blood, resulting in the potential for increased bleeding and decreased ability for clotting. THC12 is an autosomal recessive form manifesting from infancy or early childhood with bleeding episodes. Clinical features include petechiae, easy bruising, epistaxis, hematomas, menorrhagia, and increased bleeding after trauma or surgery. Rare patients may have thrombocytopenia without bleeding. Some affected individuals have myopathic features, usually apparent in the second or third decades of life. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. The UDP-N-acetylglucosamine 2-epimerase activity, in contrast to the N-acetylmannosamine kinase activity, exhibits allosteric regulation by cytidine monophosphate-N-acetylneuraminic acid (CMP-Neu5Ac), the end product of neuraminic acid biosynthesis. Moreover, the activity is contingent upon the oligomeric state of the enzyme. The monomeric form is inactive, while the dimeric form selectively catalyzes the phosphorylation of N-acetylmannosamine. The hexameric form, on the other hand, demonstrates full proficiency in both enzyme activities. Furthermore, the UDP-N-acetylglucosamine 2-epimerase activity is increased by PKC-mediated phosphorylation.
Pathway. Amino-sugar metabolism; N-acetylneuraminate biosynthesis.
Similarity. In the N-terminal section; belongs to the UDP-N-acetylglucosamine 2-epimerase family. In the C-terminal section; belongs to the ROK (NagC/XylR) family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y223-1 | 1, GNE1 | yes |
| Q9Y223-2 | 2, GNE2 | |
| Q9Y223-3 | 3, GNE3 | |
| Q9Y223-4 | 4 | |
| Q9Y223-5 | 5 |
RefSeq proteins (7): NP_001121699, NP_001177312, NP_001177313, NP_001177317, NP_001361726, NP_001361727, NP_005467* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000600 | ROK | Family |
| IPR003331 | UDP_GlcNAc_Epimerase_2_dom | Domain |
| IPR020004 | UDP-GlcNAc_Epase | Family |
| IPR043129 | ATPase_NBD | Homologous_superfamily |
Pfam: PF00480, PF02350
Enzyme classification (BRENDA):
- EC 2.7.1.60 — N-acylmannosamine kinase (BRENDA: 7 organisms, 31 substrates, 39 inhibitors, 21 Km, 8 kcat entries)
- EC 3.2.1.183 — UDP-N-acetylglucosamine 2-epimerase (hydrolysing) (BRENDA: 10 organisms, 5 substrates, 11 inhibitors, 10 Km, 8 kcat entries)
- EC 5.1.3.14 — UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) (BRENDA: 19 organisms, 94 substrates, 85 inhibitors, 25 Km, 12 kcat entries)
Substrate kinetics (BRENDA)
11 substrates with measured Km, best-characterized 11. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| UDP-N-ACETYL-D-GLUCOSAMINE | 0.011–20.9 | 18 |
| UDP-N-ACETYL-ALPHA-D-GLUCOSAMINE | 0.0005–11 | 10 |
| N-ACETYL-D-MANNOSAMINE | 0.093–1.34 | 8 |
| ATP | 0.73–4.4 | 7 |
| UDP-N-ACETYL-ALPHA-D-MANNOSAMINE | 0.22–5.2 | 4 |
| N-ACETYL-D-GLUCOSAMINE | 0.049–0.26 | 3 |
| D-GLUCOSE | 15 | 1 |
| N-ACYL-D-MANNOSAMINE | 0.127 | 1 |
| N-GLYCOLYLMANNOSAMINE | 1.2 | 1 |
| UDP-N-ACETYL-ALPHA-D-GLUCOSAMINE | 3.6 | 1 |
| UDP-N-ACETYLGLUCOSAMINE | 0.63 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- an N-acyl-D-mannosamine + ATP = an N-acyl-D-mannosamine 6-phosphate + ADP + H(+) (RHEA:23832)
- UDP-N-acetyl-alpha-D-glucosamine + H2O = aldehydo-N-acetyl-D-mannosamine + UDP + H(+) (RHEA:30683)
UniProt features (165 total): sequence variant 49, binding site 39, helix 31, strand 26, sequence conflict 6, splice variant 5, turn 4, region of interest 2, chain 1, active site 1, mutagenesis site 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2YHW | X-RAY DIFFRACTION | 1.64 |
| 2YHY | X-RAY DIFFRACTION | 1.82 |
| 2YI1 | X-RAY DIFFRACTION | 2.15 |
| 4ZHT | X-RAY DIFFRACTION | 2.69 |
| 3EO3 | X-RAY DIFFRACTION | 2.84 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y223-F1 | 92.96 | 0.88 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 517
Ligand- & substrate-binding residues (39): 271; 280; 281; 282; 301; 302; 307; 321; 413; 416; 417; 418 …
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 517 | loss of n-acylmannosamine kinase activity. decreased affinity for n-acyl-d-mannosamine. no effect on structure. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-4085001 | Sialic acid metabolism |
| R-HSA-4085011 | Defective GNE causes sialuria, NK and IBM2 |
MSigDB gene sets: 418 (showing top):
GCM_ZNF198, GOBP_CARBOHYDRATE_PHOSPHORYLATION, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_AMINO_SUGAR_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, UEDA_PERIFERAL_CLOCK, GOBP_AMIDE_METABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, GOBP_AMIDE_BIOSYNTHETIC_PROCESS, chr9p13
GO Biological Process (7): N-acetylglucosamine biosynthetic process (GO:0006045), UDP-N-acetylglucosamine metabolic process (GO:0006047), CMP-N-acetylneuraminate biosynthetic process (GO:0006055), N-acetylneuraminate biosynthetic process (GO:0046380), N-acetylneuraminate metabolic process (GO:0006054), carbohydrate phosphorylation (GO:0046835), obsolete glycosylation (GO:0070085)
GO Molecular Function (11): hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), ATP binding (GO:0005524), UDP-N-acetylglucosamine 2-epimerase activity (GO:0008761), N-acylmannosamine kinase activity (GO:0009384), metal ion binding (GO:0046872), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), hydrolase activity (GO:0016787)
GO Cellular Component (2): cytosol (GO:0005829), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Synthesis of substrates in N-glycan biosythesis | 1 |
| Diseases associated with glycosylation precursor biosynthesis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| amino sugar metabolic process | 2 |
| catalytic activity | 2 |
| cellular anatomical structure | 2 |
| N-acetylglucosamine metabolic process | 1 |
| glucosamine-containing compound biosynthetic process | 1 |
| nucleotide-sugar metabolic process | 1 |
| nucleotide-sugar biosynthetic process | 1 |
| CMP-N-acetylneuraminate metabolic process | 1 |
| N-acetylneuraminate metabolic process | 1 |
| amino sugar biosynthetic process | 1 |
| carboxylic acid biosynthetic process | 1 |
| carboxylic acid metabolic process | 1 |
| carbohydrate metabolic process | 1 |
| phosphorylation | 1 |
| hydrolase activity, acting on glycosyl bonds | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| racemase and epimerase activity, acting on carbohydrates and derivatives | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| carbohydrate kinase activity | 1 |
| cation binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
2022 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GNE | RNF38 | Q9H0F5 | 952 |
| GNE | CRMP1 | Q14194 | 898 |
| GNE | NANS | Q9NR45 | 880 |
| GNE | SLC17A5 | Q9NRA2 | 848 |
| GNE | PODXL | O00592 | 769 |
| GNE | SLC35A1 | P78382 | 761 |
| GNE | ATP7A | Q04656 | 757 |
| GNE | GALE | Q14376 | 736 |
| GNE | MYH2 | Q9UKX2 | 727 |
| GNE | MYOT | Q9UBF9 | 668 |
| GNE | UAP1 | Q16222 | 657 |
| GNE | ZBTB16 | Q05516 | 646 |
| GNE | CMAS | Q8NFW8 | 621 |
| GNE | ACTN1 | P12814 | 611 |
| GNE | NAGK | Q9UJ70 | 579 |
IntAct
59 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NOTCH2NLA | GNE | psi-mi:“MI:0915”(physical association) | 0.670 |
| GNE | NOTCH2NLA | psi-mi:“MI:0915”(physical association) | 0.670 |
| GAS2L2 | MAPRE1 | psi-mi:“MI:0914”(association) | 0.670 |
| GNE | ACTN1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| GNE | ACTN1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| GNE | psi-mi:“MI:0915”(physical association) | 0.560 | |
| GNE | SPRY2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRTAP5-9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-5 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRTAP10-7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRTAP10-8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRTAP10-9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT31 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | ADAMTSL4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GTPBP3 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP4-12 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRTAP9-2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPRY2 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-7 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRT31 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ADAMTSL4 | GNE | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | GTPBP3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNE | KRTAP4-12 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (129): GNE (Two-hybrid), GNE (Two-hybrid), GNE (Two-hybrid), SPRY2 (Two-hybrid), ADAMTSL4 (Two-hybrid), KRTAP4-12 (Two-hybrid), KRTAP9-2 (Two-hybrid), GTPBP3 (Two-hybrid), KRTAP10-7 (Two-hybrid), KRTAP10-9 (Two-hybrid), KRTAP10-5 (Two-hybrid), KRTAP10-8 (Two-hybrid), KRTAP10-3 (Two-hybrid), NOTCH2NL (Two-hybrid), GNE (Affinity Capture-MS)
ESM2 similar proteins: A0REB4, A3N2D3, A4IPB3, A5YBJ5, A6M229, A7ZAH9, B2V4J8, B5XII4, B8DCT6, C1EVJ1, C1KZA1, C3LHY4, C3PAZ0, O34768, O35826, O82616, P0DC12, P0DC13, P37829, P42414, P50845, P77493, Q1J4Q3, Q42896, Q4V1F7, Q55480, Q5KYR3, Q5WKY9, Q5X9Y3, Q63B75, Q65D02, Q65EY9, Q6HIK4, Q6LK43, Q723S9, Q7TQ49, Q7XJ81, Q81QB7, Q898F0, Q8Y9Y2
Diamond homologs: A0KYQ6, A1AA13, A1JL75, A5F7C0, A7FH52, A7ZKM3, A7ZZ76, A8AHU6, A9MG95, A9N4M6, B1IUE6, B1JI57, B1LI25, B1XA29, B2K721, B2VDQ9, B4T3Q8, B4TFJ6, B4TTJ1, B5BAF5, B5F8D3, B5FEF2, B5FK86, B5QXB6, B5RB82, B5YWJ2, B6EKQ4, B6I9J7, B7LG53, B7LPQ4, B7LX53, B7MJA6, B7MTP9, B7NAZ7, B7NKG0, B7UPY3, B7VNU4, C0Q772, C3LNA1, C4ZS59
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PKC | “up-regulates activity” | GNE | phosphorylation |
| GNE | “down-regulates quantity” | UDP-N-acetyl-alpha-D-glucosamine | “chemical modification” |
| GNE | “up-regulates quantity” | “N-acyl-D-mannosamine 6-phosphate(2-)” | “chemical modification” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 38 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Keratinization | 7 | 15.0× | 4e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1253 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 86 |
| Likely pathogenic | 105 |
| Uncertain significance | 471 |
| Likely benign | 393 |
| Benign | 47 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068026 | NM_005476.7(GNE):c.2005_2011del (p.Gly669fs) | Pathogenic |
| 1069453 | NM_001128227.3(GNE):c.55_62del (p.Glu18_Leu19insTer) | Pathogenic |
| 1072426 | NM_005476.7(GNE):c.1816+5G>A | Pathogenic |
| 1075047 | NM_005476.7(GNE):c.221_222del (p.Thr74fs) | Pathogenic |
| 1323024 | NM_005476.7(GNE):c.1220dup (p.Ser408fs) | Pathogenic |
| 1323025 | NM_005476.7(GNE):c.723_727del (p.Ile241_Ser242insTer) | Pathogenic |
| 1371995 | NM_005476.7(GNE):c.454_616+70delinsTAG | Pathogenic |
| 1377078 | NM_005476.7(GNE):c.1789C>T (p.Gln597Ter) | Pathogenic |
| 1412885 | NM_005476.7(GNE):c.1112del (p.Ile370_Leu371insTer) | Pathogenic |
| 1413067 | NM_005476.7(GNE):c.997dup (p.His333fs) | Pathogenic |
| 1428290 | NM_005476.7(GNE):c.952_953del (p.Leu318fs) | Pathogenic |
| 1448509 | NM_005476.7(GNE):c.174_177dup (p.Met60fs) | Pathogenic |
| 1452395 | NM_005476.7(GNE):c.1501_1529del (p.Arg501fs) | Pathogenic |
| 1453995 | NM_005476.7(GNE):c.1048C>T (p.Gln350Ter) | Pathogenic |
| 1458582 | NC_000009.11:g.(?36227235)(36227465_?)del | Pathogenic |
| 162151 | NM_005476.7(GNE):c.711G>A (p.Leu237=) | Pathogenic |
| 188882 | NM_005476.7(GNE):c.1760T>C (p.Ile587Thr) | Pathogenic |
| 188916 | NM_005476.7(GNE):c.1306C>T (p.Gln436Ter) | Pathogenic |
| 2014927 | NM_005476.7(GNE):c.798del (p.Lys267fs) | Pathogenic |
| 2018618 | NM_005476.7(GNE):c.1139_1140insTAGCCTATAATTTAACTTTGACAAAGTTATGAAATGGTTTTTCTAATACCTTTTTGAAAAAGTCATGGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTTCA (p.Gln380delinsHisSerLeuTer) | Pathogenic |
| 2021712 | NM_005476.7(GNE):c.1926_1927insCGGCCCAGAGCATCCTA (p.Arg643_Thr644insProArgAlaSerTer) | Pathogenic |
| 2108109 | NM_005476.7(GNE):c.2135del (p.Met712fs) | Pathogenic |
| 2121685 | NM_001128227.3(GNE):c.22C>T (p.Gln8Ter) | Pathogenic |
| 2128738 | NM_005476.7(GNE):c.1990del (p.Leu664_Val665insTer) | Pathogenic |
| 2195084 | NM_005476.7(GNE):c.1539G>A (p.Trp513Ter) | Pathogenic |
| 2423766 | NC_000009.11:g.(?36246018)(36246489_?)del | Pathogenic |
| 2423767 | NC_000009.11:g.(?36246008)(36276941_?)del | Pathogenic |
| 2423768 | NC_000009.11:g.(?36227225)(36276941_?)del | Pathogenic |
| 2436626 | NM_005476.7(GNE):c.-42-1G>T | Pathogenic |
| 2436630 | NM_005476.7(GNE):c.831_833delinsATCCCAA (p.Ala278fs) | Pathogenic |
SpliceAI
1816 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:36217597:CCAG:C | acceptor_gain | 1.0000 |
| 9:36217598:CAG:C | acceptor_gain | 1.0000 |
| 9:36217598:CAGC:C | acceptor_gain | 1.0000 |
| 9:36217600:GCT:G | acceptor_loss | 1.0000 |
| 9:36217601:C:CC | acceptor_gain | 1.0000 |
| 9:36217601:CTATA:C | acceptor_loss | 1.0000 |
| 9:36218298:CT:C | acceptor_gain | 1.0000 |
| 9:36218300:C:CC | acceptor_gain | 1.0000 |
| 9:36218305:C:CT | acceptor_gain | 1.0000 |
| 9:36218309:G:GC | acceptor_gain | 1.0000 |
| 9:36223372:CCTA:C | donor_gain | 1.0000 |
| 9:36223375:A:AC | donor_gain | 1.0000 |
| 9:36223376:C:CC | donor_gain | 1.0000 |
| 9:36223376:CT:C | donor_gain | 1.0000 |
| 9:36223378:C:CA | donor_gain | 1.0000 |
| 9:36223501:CC:C | acceptor_gain | 1.0000 |
| 9:36223502:CC:C | acceptor_gain | 1.0000 |
| 9:36223502:CCTA:C | acceptor_loss | 1.0000 |
| 9:36223503:CTAAA:C | acceptor_loss | 1.0000 |
| 9:36223504:T:A | acceptor_loss | 1.0000 |
| 9:36227242:TTTTA:T | donor_loss | 1.0000 |
| 9:36227243:TTTA:T | donor_loss | 1.0000 |
| 9:36227244:TTACC:T | donor_loss | 1.0000 |
| 9:36227245:TA:T | donor_loss | 1.0000 |
| 9:36227247:CCTT:C | donor_gain | 1.0000 |
| 9:36227454:TTGAA:T | acceptor_gain | 1.0000 |
| 9:36227455:TGAA:T | acceptor_gain | 1.0000 |
| 9:36227456:GAA:G | acceptor_gain | 1.0000 |
| 9:36227457:AA:A | acceptor_gain | 1.0000 |
| 9:36227458:AC:A | acceptor_gain | 1.0000 |
AlphaMissense
4763 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:36233927:T:A | R325S | 1.000 |
| 9:36233927:T:G | R325S | 1.000 |
| 9:36233928:C:G | R325T | 1.000 |
| 9:36233996:G:C | S302R | 1.000 |
| 9:36233996:G:T | S302R | 1.000 |
| 9:36233998:T:G | S302R | 1.000 |
| 9:36234002:G:C | N300K | 1.000 |
| 9:36234002:G:T | N300K | 1.000 |
| 9:36234006:C:T | G299E | 1.000 |
| 9:36234007:C:A | G299W | 1.000 |
| 9:36236942:T:C | H220R | 1.000 |
| 9:36246144:A:G | L168P | 1.000 |
| 9:36246189:A:G | L153P | 1.000 |
| 9:36246202:C:G | A149P | 1.000 |
| 9:36246207:C:A | R147I | 1.000 |
| 9:36246207:C:G | R147T | 1.000 |
| 9:36246219:T:A | D143V | 1.000 |
| 9:36246220:C:G | D143H | 1.000 |
| 9:36246309:C:A | R113M | 1.000 |
| 9:36246312:T:A | D112V | 1.000 |
| 9:36246312:T:C | D112G | 1.000 |
| 9:36246312:T:G | D112A | 1.000 |
| 9:36246313:C:G | D112H | 1.000 |
| 9:36246378:A:G | L90P | 1.000 |
| 9:36246381:C:T | G89D | 1.000 |
| 9:36246382:C:G | G89R | 1.000 |
| 9:36246388:A:G | S87P | 1.000 |
| 9:36222927:A:G | W495R | 0.999 |
| 9:36222927:A:T | W495R | 0.999 |
| 9:36227270:C:G | R420P | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000005237 (9:36255233 A>C,G), RS1000033749 (9:36255581 G>A,C), RS1000042394 (9:36230707 T>C), RS1000048314 (9:36217120 G>C,T), RS1000393245 (9:36243870 A>G,T), RS1000412711 (9:36278278 A>G), RS1000449038 (9:36234986 G>A,C), RS1000540824 (9:36273341 C>G), RS1000550083 (9:36266789 G>A,T), RS1000551297 (9:36222375 C>G,T), RS1000654782 (9:36215413 A>C), RS1000660522 (9:36271847 T>G), RS1000782184 (9:36236467 T>G), RS1000788413 (9:36273143 A>C,G), RS1000815421 (9:36236161 G>A,T)
Disease associations
OMIM: gene MIM:603824 | disease phenotypes: MIM:269921, MIM:605820, MIM:620757, MIM:147421, MIM:609500, MIM:120435
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| GNE myopathy | Definitive | Autosomal recessive |
| sialuria | Strong | Autosomal dominant |
| thrombocytopenia 12 with or without myopathy | Strong | Autosomal recessive |
| platelet-type bleeding disorder 19 | Supportive | Autosomal recessive |
| congenital myopathy | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| macrothrombocytopenia, isolated | Definitive | AR |
Mondo (9): sialuria (MONDO:0010028), GNE myopathy (MONDO:0011603), thrombocytopenia 12 with or without myopathy (MONDO:0958325), thrombocytopenia (MONDO:0002049), inclusion body myositis (MONDO:0007827), myopathy, autophagic vacuolar, infantile-onset (MONDO:0012286), hereditary nonpolyposis colon cancer (MONDO:0018630), platelet-type bleeding disorder 19 (MONDO:0014518), congenital myopathy (MONDO:0019952)
Orphanet (5): Sialuria (Orphanet:3166), GNE myopathy (Orphanet:602), Inclusion body myositis (Orphanet:611), Isolated hereditary giant platelet disorder (Orphanet:220452), Hereditary nonpolyposis colon cancer (Orphanet:443909)
HPO phenotypes
105 total (30 of 105 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000132 | Menorrhagia |
| HP:0000158 | Macroglossia |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000256 | Macrocephaly |
| HP:0000280 | Coarse facial features |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000343 | Long philtrum |
| HP:0000369 | Low-set ears |
| HP:0000421 | Epistaxis |
| HP:0000431 | Wide nasal bridge |
| HP:0000629 | Periorbital fullness |
| HP:0000664 | Synophrys |
| HP:0000821 | Hypothyroidism |
| HP:0000943 | Dysostosis multiplex |
| HP:0000967 | Petechiae |
| HP:0000978 | Bruising susceptibility |
| HP:0001007 | Hirsutism |
| HP:0001081 | Cholelithiasis |
| HP:0001250 | Seizure |
| HP:0001256 | Mild intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001324 | Muscle weakness |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002815_5 | Bipolar disorder (inflammation and infection response interaction) | 6.000000e-06 |
| GCST008097_31 | Bisphosphonate-associated atypical femoral fracture | 2.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007050 | HSV1 seropositivity |
| EFO:0009958 | response to bisphosphonate |
| EFO:0009960 | atypical femoral fracture |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018979 | Myositis, Inclusion Body | C05.651.594.600; C10.668.491.562.500 |
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523504 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 5 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Particulate Matter | increases abundance, affects expression, increases reaction, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | affects binding, increases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| periodate-oxidized adenosine | affects expression | 1 |
| beta-methylcholine | affects expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| avobenzone | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| oxidized-L-alpha-1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphorylcholine | affects expression, increases reaction | 1 |
| 14-deoxy-11,12-didehydroandrographolide | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| fatostatin | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Troglitazone | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects methylation | 1 |
| Vehicle Emissions | affects expression, increases reaction | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Doxorubicin | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4369794 | Binding | Binding affinity to His-tagged human MNK expressed in Escherichia coli BL21(DE3) in presence of ATP by 9F-NMR spectroscopy analysis | Ligand-Based Fluorine NMR Screening: Principles and Applications in Drug Discovery Projects. — J Med Chem |
Cellosaurus cell lines
8 cell lines: 6 cancer cell line, 1 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1MW | Abcam K-562 GNE KO | Cancer cell line | Female |
| CVCL_D2JG | Abcam Raji GNE KO | Cancer cell line | Male |
| CVCL_D9FN | Ubigene HEK293 GNE KO | Transformed cell line | Female |
| CVCL_E4G7 | FDHSi005-A | Induced pluripotent stem cell | Male |
| CVCL_SQ15 | HAP1 GNE (-) 1 | Cancer cell line | Male |
| CVCL_SQ16 | HAP1 GNE (-) 2 | Cancer cell line | Male |
| CVCL_SQ17 | HAP1 GNE (-) 3 | Cancer cell line | Male |
| CVCL_UQ63 | Abcam Jurkat GNE KO | Cancer cell line | Male |
Clinical trials (associated diseases)
298 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00039858 | PHASE4 | COMPLETED | Evaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin |
| NCT00239733 | PHASE4 | TERMINATED | Anti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection |
| NCT00907478 | PHASE4 | COMPLETED | Study on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP) |
| NCT01727401 | PHASE4 | TERMINATED | Thromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia |
| NCT02032134 | PHASE4 | TERMINATED | Protocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia |
| NCT02267993 | PHASE4 | COMPLETED | Efficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients |
| NCT03633019 | PHASE4 | UNKNOWN | High-dose Use of rhTPO in CIT Patients |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04906083 | PHASE4 | UNKNOWN | Avatrombopag in Patients With End-stage Liver Disease and Thrombocytopenia |
| NCT05217719 | PHASE4 | UNKNOWN | Effects of Recombinant Human Thrombopoietin on Platelet Levels in ICU Patients |
| NCT05255003 | PHASE4 | RECRUITING | STrategies for Anticoagulation in Patients With thRombocytopenia and Cancer-associated Thrombosis |
| NCT05382013 | PHASE4 | UNKNOWN | Efficacy and Safety of Avatrombopag for Treating TCP in HBV-ACLF Patients Receiving ALSS Treatment |
| NCT05944458 | PHASE4 | COMPLETED | Efficacy of Intravenous N-Acetylcysteine in Preventing Linezolid-Induced Thrombocytopenia in Critically Ill Patients |
| NCT06562738 | PHASE4 | RECRUITING | Clinical Study on Efficacy and Safety of Hetrombopag in the Preoperative Patients of Thrombocytopenia |
| NCT07240649 | PHASE4 | NOT_YET_RECRUITING | Outcomes From Hyperbaric Oxygen (HBO2) Treatment for Emerging Indications |
| NCT02377921 | PHASE3 | COMPLETED | Phase 3 Randomized, Double-Blind, Placebo-Controlled Study to Evaluate Sialic Acid in Patients With Glucosamine (UDP-N-acetyl)-2-epimerase Myopathy (GNEM) or Hereditary Inclusion Body Myopathy (HIBM) |
| NCT02736188 | PHASE3 | TERMINATED | Study to Evaluate the Safety and Efficacy of Aceneuramic Acid Extended-Release (Ace-ER) Tablets in Patients With Glucosamine (UDP-N-acetyl)-2-epimerase Myopathy (GNEM) or Hereditary Inclusion Body Myopathy (HIBM) |
| NCT04671472 | PHASE3 | COMPLETED | Efficacy Confirmation Study of NPC-09 |
| NCT00037791 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00039910 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00073580 | PHASE3 | COMPLETED | Angiomax in Patients With HIT/HITTS Type II Undergoing Off-Pump Coronary Artery Bypass Grafting (CABG) (CHOOSE) |
| NCT00102323 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Refractory to Splenectomy |
| NCT00102336 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Prior to Splenectomy |
| NCT00116688 | PHASE3 | COMPLETED | Open Label Extension Study of Romiplostim (AMG 531) in Thrombocytopenic Patients With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) |
| NCT00128713 | PHASE3 | COMPLETED | Optimal Platelet Dose Strategy for Management of Thrombocytopenia |
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Related Atlas pages
- Associated diseases: sialuria, GNE myopathy, platelet-type bleeding disorder 19, thrombocytopenia 12 with or without myopathy, congenital myopathy, macrothrombocytopenia, isolated
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital myopathy, GNE myopathy, hereditary nonpolyposis colon cancer, inclusion body myositis, myopathy, autophagic vacuolar, infantile-onset, platelet-type bleeding disorder 19, sialuria, thrombocytopenia, thrombocytopenia 12 with or without myopathy