GNG12
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Summary
GNG12 (G protein subunit gamma 12, HGNC:19663) is a protein-coding gene on chromosome 1p31.3, encoding Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 (Q9UBI6). Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems.
Enables PDZ domain binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in extracellular exosome.
Source: NCBI Gene 55970 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 5 total
- MANE Select transcript:
NM_018841
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19663 |
| Approved symbol | GNG12 |
| Name | G protein subunit gamma 12 |
| Location | 1p31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000172380 |
| Ensembl biotype | protein_coding |
| OMIM | 615405 |
| Entrez | 55970 |
Gene structure
Transcript identifiers
Ensembl transcripts: 35 — 34 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000370982, ENST00000494936, ENST00000857639, ENST00000857640, ENST00000857641, ENST00000857642, ENST00000857643, ENST00000857644, ENST00000857645, ENST00000857646, ENST00000857647, ENST00000857648, ENST00000857649, ENST00000857650, ENST00000857651, ENST00000857652, ENST00000857653, ENST00000857654, ENST00000857655, ENST00000857656, ENST00000857657, ENST00000857658, ENST00000857659, ENST00000857660, ENST00000857661, ENST00000857662, ENST00000857663, ENST00000857664, ENST00000918432, ENST00000948511, ENST00000948512, ENST00000948513, ENST00000948514, ENST00000948515, ENST00000948516
RefSeq mRNA: 1 — MANE Select: NM_018841
NM_018841
CCDS: CCDS30749
Canonical transcript exons
ENST00000370982 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001175064 | 67777458 | 67777507 |
| ENSE00001454049 | 67701475 | 67705576 |
| ENSE00001454051 | 67707594 | 67707712 |
| ENSE00001454052 | 67833344 | 67833467 |
Expression profiles
Bgee: expression breadth ubiquitous, 291 present calls, max score 99.00.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 44.2533 / max 339.2180, expressed in 1572 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 12760 | 29.9700 | 1517 |
| 12761 | 13.0678 | 1507 |
| 12764 | 0.4310 | 235 |
| 12763 | 0.4045 | 217 |
| 12762 | 0.3800 | 210 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 99.00 | gold quality |
| upper leg skin | UBERON:0004262 | 98.68 | gold quality |
| nipple | UBERON:0002030 | 98.64 | gold quality |
| secondary oocyte | CL:0000655 | 98.61 | gold quality |
| blood vessel layer | UBERON:0004797 | 98.51 | gold quality |
| duodenum | UBERON:0002114 | 98.41 | gold quality |
| skin of hip | UBERON:0001554 | 98.03 | gold quality |
| penis | UBERON:0000989 | 97.86 | gold quality |
| saphenous vein | UBERON:0007318 | 97.83 | gold quality |
| synovial joint | UBERON:0002217 | 97.64 | gold quality |
| mammalian vulva | UBERON:0000997 | 97.60 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 97.57 | gold quality |
| urethra | UBERON:0000057 | 97.55 | gold quality |
| parietal pleura | UBERON:0002400 | 97.30 | gold quality |
| cauda epididymis | UBERON:0004360 | 97.25 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.10 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 96.94 | gold quality |
| rectum | UBERON:0001052 | 96.81 | gold quality |
| gall bladder | UBERON:0002110 | 96.79 | gold quality |
| adrenal tissue | UBERON:0018303 | 96.72 | gold quality |
| popliteal artery | UBERON:0002250 | 96.66 | gold quality |
| tibial artery | UBERON:0007610 | 96.66 | gold quality |
| seminal vesicle | UBERON:0000998 | 96.64 | gold quality |
| pleura | UBERON:0000977 | 96.63 | gold quality |
| aorta | UBERON:0000947 | 96.58 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.51 | gold quality |
| thoracic aorta | UBERON:0001515 | 96.45 | gold quality |
| caput epididymis | UBERON:0004358 | 96.45 | gold quality |
| ascending aorta | UBERON:0001496 | 96.39 | gold quality |
| superficial temporal artery | UBERON:0001614 | 96.38 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 30.38 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
227 targeting GNG12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-1193 | 100.00 | 65.93 | 529 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
Literature-anchored findings (GeneRIF, showing 3)
- Results showed some evidence of differentially methylated cg25189904 in GNG12 gene mediating the effect of exposure to maternal smoking on schizophrenia-related outcomes. (PMID:31262328)
- GNG12 regulates PD-L1 expression by activating NF-kappaB signaling in pancreatic ductal adenocarcinoma. (PMID:31898405)
- Low GNG12 Expression Predicts Adverse Outcomes: A Potential Therapeutic Target for Osteosarcoma. (PMID:34691083)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gng12a | ENSDARG00000003375 |
| danio_rerio | gng12b | ENSDARG00000098123 |
| mus_musculus | Gng12 | ENSMUSG00000036402 |
| rattus_norvegicus | Gng12 | ENSRNOG00000050231 |
Paralogs (11): GNG11 (ENSG00000127920), GNGT1 (ENSG00000127928), GNG5B (ENSG00000133136), GNG3 (ENSG00000162188), GNGT2 (ENSG00000167083), GNG8 (ENSG00000167414), GNG4 (ENSG00000168243), GNG5 (ENSG00000174021), GNG7 (ENSG00000176533), GNG2 (ENSG00000186469), GNG10 (ENSG00000242616)
Protein
Protein identifiers
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 — Q9UBI6 (reviewed: Q9UBI6)
All UniProt accessions (1): Q9UBI6
UniProt curated annotations — full annotation on UniProt →
Function. Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Subunit / interactions. G proteins are composed of 3 units, alpha, beta and gamma.
Subcellular location. Cell membrane.
Similarity. Belongs to the G protein gamma family.
RefSeq proteins (1): NP_061329* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001770 | G-protein_gamma | Family |
| IPR015898 | G-protein_gamma-like_dom | Domain |
| IPR036284 | GGL_sf | Homologous_superfamily |
Pfam: PF00631
UniProt features (10 total): modified residue 5, initiator methionine 1, chain 1, propeptide 1, lipid moiety-binding region 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UBI6-F1 | 89.68 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 2, 26, 42, 49, 69, 69
Function
Pathways and Gene Ontology
Reactome pathways
29 pathways
| ID | Pathway |
|---|---|
| R-HSA-1296041 | Activation of G protein gated Potassium channels |
| R-HSA-163359 | Glucagon signaling in metabolic regulation |
| R-HSA-202040 | G-protein activation |
| R-HSA-381676 | Glucagon-like Peptide-1 (GLP1) regulates insulin secretion |
| R-HSA-392170 | ADP signalling through P2Y purinoceptor 12 |
| R-HSA-392451 | G beta:gamma signalling through PI3Kgamma |
| R-HSA-392851 | Prostacyclin signalling through prostacyclin receptor |
| R-HSA-400042 | Adrenaline,noradrenaline inhibits insulin secretion |
| R-HSA-4086398 | Ca2+ pathway |
| R-HSA-416476 | G alpha (q) signalling events |
| R-HSA-416482 | G alpha (12/13) signalling events |
| R-HSA-418217 | G beta:gamma signalling through PLC beta |
| R-HSA-418555 | G alpha (s) signalling events |
| R-HSA-418592 | ADP signalling through P2Y purinoceptor 1 |
| R-HSA-418594 | G alpha (i) signalling events |
| R-HSA-418597 | G alpha (z) signalling events |
| R-HSA-420092 | Glucagon-type ligand receptors |
| R-HSA-428930 | Thromboxane signalling through TP receptor |
| R-HSA-432040 | Vasopressin regulates renal water homeostasis via Aquaporins |
| R-HSA-456926 | Thrombin signalling through proteinase activated receptors (PARs) |
| R-HSA-500657 | Presynaptic function of Kainate receptors |
| R-HSA-6814122 | Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding |
| R-HSA-8964315 | G beta:gamma signalling through BTK |
| R-HSA-8964616 | G beta:gamma signalling through CDC42 |
| R-HSA-9009391 | Extra-nuclear estrogen signaling |
| R-HSA-9634597 | GPER1 signaling |
| R-HSA-9660821 | ADORA2B mediated anti-inflammatory cytokines production |
| R-HSA-9856530 | High laminar flow shear stress activates signaling by PIEZO1 and PECAM1:CDH5:KDR in endothelial cells |
| R-HSA-997272 | Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
MSigDB gene sets: 331 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, GSE45365_NK_CELL_VS_BCELL_UP, TGGTGCT_MIR29A_MIR29B_MIR29C, MODULE_52, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, REACTOME_GLUCAGON_TYPE_LIGAND_RECEPTORS, REACTOME_ADRENALINE_NORADRENALINE_INHIBITS_INSULIN_SECRETION, REACTOME_POTASSIUM_CHANNELS, REACTOME_INWARDLY_RECTIFYING_K_CHANNELS, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, REACTOME_G_ALPHA_Z_SIGNALLING_EVENTS, KEGG_MAPK_SIGNALING_PATHWAY, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, REACTOME_GLUCAGON_SIGNALING_IN_METABOLIC_REGULATION, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP
GO Biological Process (2): signal transduction (GO:0007165), G protein-coupled receptor signaling pathway (GO:0007186)
GO Molecular Function (3): PDZ domain binding (GO:0030165), G-protein beta-subunit binding (GO:0031681), protein binding (GO:0005515)
GO Cellular Component (5): heterotrimeric G-protein complex (GO:0005834), plasma membrane (GO:0005886), synapse (GO:0045202), extracellular exosome (GO:0070062), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| GPCR downstream signalling | 5 |
| Signal amplification | 3 |
| Regulation of insulin secretion | 2 |
| G-protein beta:gamma signalling | 2 |
| G protein gated Potassium channels | 1 |
| Integration of energy metabolism | 1 |
| Opioid Signalling | 1 |
| Platelet homeostasis | 1 |
| Beta-catenin independent WNT signaling | 1 |
| Class B/2 (Secretin family receptors) | 1 |
| Aquaporin-mediated transport | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| protein domain specific binding | 1 |
| protein binding | 1 |
| binding | 1 |
| extrinsic component of cytoplasmic side of plasma membrane | 1 |
| plasma membrane protein complex | 1 |
| GTPase complex | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell junction | 1 |
| extracellular vesicle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1654 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GNG12 | GNB1 | P04697 | 783 |
| GNG12 | GNG13 | Q9P2W3 | 766 |
| GNG12 | GNB4 | Q9HAV0 | 683 |
| GNG12 | GNAI1 | P04898 | 569 |
| GNG12 | GNAI2 | P04899 | 565 |
| GNG12 | ADCY9 | O60503 | 503 |
| GNG12 | F2RL3 | Q96RI0 | 475 |
| GNG12 | NNAT | Q16517 | 460 |
| GNG12 | GNB2 | P11016 | 453 |
| GNG12 | GNG11 | P50152 | 441 |
| GNG12 | PRKCE | Q02156 | 421 |
| GNG12 | HTR5A | P47898 | 419 |
| GNG12 | SFXN3 | Q9BWM7 | 414 |
| GNG12 | GNG10 | P50151 | 414 |
| GNG12 | MYO1G | B0I1T2 | 409 |
IntAct
96 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED20 | MED19 | psi-mi:“MI:0914”(association) | 0.840 |
| FHL2 | GNG12 | psi-mi:“MI:0915”(physical association) | 0.830 |
| GNG12 | FHL2 | psi-mi:“MI:0915”(physical association) | 0.830 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| GNG12 | GNB1 | psi-mi:“MI:0914”(association) | 0.640 |
| GNAI3 | RGS12 | psi-mi:“MI:0914”(association) | 0.640 |
| HDAC7 | GNG12 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TWF1 | MYO1C | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| CAT | NUDT19 | psi-mi:“MI:0914”(association) | 0.420 |
| Cbx1 | FLOT1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Poc1b | psi-mi:“MI:0915”(physical association) | 0.400 | |
| Mau2 | NIPBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| Trim69 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| GPC1 | SNAP23 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPC1 | GANAB | psi-mi:“MI:0915”(physical association) | 0.400 |
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| BLK | EEF1E1 | psi-mi:“MI:0914”(association) | 0.350 |
| MYH9 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Bmpr1a | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (138): GNG12 (Two-hybrid), GNG12 (Affinity Capture-MS), GNG12 (Co-fractionation), GNG12 (Co-fractionation), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-MS), GNG12 (Affinity Capture-RNA), GNG12 (Affinity Capture-MS)
ESM2 similar proteins: A0A804HLA8, O14610, O60262, O97564, P02698, P30671, P38040, P43425, P50150, P50151, P50153, P50154, P54406, P59768, P61952, P61953, P61954, P63077, P63078, P63210, P63211, P63212, P63213, P63214, P63215, P63216, P63217, P63218, P63219, Q28024, Q4VT26, Q5E9F0, Q5R639, Q5R7U4, Q5RBQ0, Q5REH7, Q61012, Q61016, Q61017, Q6CPB4
Diamond homologs: A0A1W2PPG7, O60262, P30671, P43425, P50150, P50153, P59768, P63212, P63213, P63214, P63215, P63216, Q28024, Q5R639, Q5R7U4, Q5RBQ0, Q61016, Q9DAS9, Q9UBI6, A0A804HLA8, P38040, P50151, P63077, P63078, P63217, P63218, P63219, Q4VT26, Q5REH7, Q80SZ7, Q9CXP8, Q9UK08, O14610, O97564, P02698, P50154, P54406, P61952, P61953, P61954
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GNG12 | up-regulates | AKT2 | binding |
| GNG12 | up-regulates | PIK3CA | binding |
| “prostaglandin E2” | up-regulates | GNG12 | “chemical activation” |
| GNG12 | up-regulates | PLCE1 | binding |
| GNG12 | down-regulates | PRKACA | binding |
| SMO | up-regulates | GNG12 | binding |
| AGTR1 | up-regulates | GNG12 | binding |
| GNG12 | up-regulates | PI3K | binding |
| PTGER3 | up-regulates | GNG12 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 93 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Prostacyclin signalling through prostacyclin receptor | 6 | 53.0× | 7e-08 |
| ADP signalling through P2Y purinoceptor 12 | 7 | 51.1× | 2e-08 |
| Thromboxane signalling through TP receptor | 7 | 49.0× | 2e-08 |
| G beta:gamma signalling through BTK | 5 | 46.6× | 2e-06 |
| G-protein activation | 6 | 42.0× | 3e-07 |
| G beta:gamma signalling through PLC beta | 5 | 42.0× | 3e-06 |
| G beta:gamma signalling through CDC42 | 5 | 42.0× | 3e-06 |
| ADP signalling through P2Y purinoceptor 1 | 6 | 40.3× | 3e-07 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
5 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 3 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1019 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:67707588:TCTTA:T | donor_loss | 1.0000 |
| 1:67707589:CTTAC:C | donor_loss | 1.0000 |
| 1:67707590:TTA:T | donor_loss | 1.0000 |
| 1:67707591:TACCT:T | donor_loss | 1.0000 |
| 1:67707593:C:CT | donor_loss | 1.0000 |
| 1:67707711:AT:A | acceptor_gain | 1.0000 |
| 1:67765192:T:TA | donor_gain | 1.0000 |
| 1:67777451:AACTT:A | donor_loss | 1.0000 |
| 1:67777452:ACTT:A | donor_loss | 1.0000 |
| 1:67777453:CTT:C | donor_loss | 1.0000 |
| 1:67777454:TTA:T | donor_loss | 1.0000 |
| 1:67777455:TACCA:T | donor_loss | 1.0000 |
| 1:67777456:A:T | donor_loss | 1.0000 |
| 1:67777457:C:CA | donor_loss | 1.0000 |
| 1:67833342:ACCCG:A | donor_gain | 1.0000 |
| 1:67833343:CCCG:C | donor_gain | 1.0000 |
| 1:67833343:CCCGC:C | donor_gain | 1.0000 |
| 1:67705574:AACC:A | acceptor_loss | 0.9900 |
| 1:67705575:ACCTG:A | acceptor_loss | 0.9900 |
| 1:67705577:C:A | acceptor_loss | 0.9900 |
| 1:67705578:T:A | acceptor_loss | 0.9900 |
| 1:67705582:A:C | acceptor_gain | 0.9900 |
| 1:67705588:A:C | acceptor_gain | 0.9900 |
| 1:67705594:C:CT | acceptor_gain | 0.9900 |
| 1:67707592:A:AC | donor_gain | 0.9900 |
| 1:67707593:C:CC | donor_gain | 0.9900 |
| 1:67707708:GAAAT:G | acceptor_gain | 0.9900 |
| 1:67707709:AAAT:A | acceptor_gain | 0.9900 |
| 1:67707713:C:CC | acceptor_gain | 0.9900 |
| 1:67777456:A:AC | donor_gain | 0.9900 |
AlphaMissense
466 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:67707600:T:A | R29S | 0.998 |
| 1:67707600:T:G | R29S | 0.998 |
| 1:67705554:A:G | L39P | 0.997 |
| 1:67705481:G:C | F63L | 0.996 |
| 1:67705481:G:T | F63L | 0.996 |
| 1:67705483:A:G | F63L | 0.996 |
| 1:67707625:A:G | L21S | 0.995 |
| 1:67705515:A:G | L52S | 0.994 |
| 1:67707601:C:G | R29T | 0.994 |
| 1:67705487:G:C | N61K | 0.993 |
| 1:67705487:G:T | N61K | 0.993 |
| 1:67705554:A:T | L39H | 0.993 |
| 1:67707614:C:G | A25P | 0.993 |
| 1:67705478:C:A | K64N | 0.992 |
| 1:67705478:C:G | K64N | 0.992 |
| 1:67705482:A:G | F63S | 0.992 |
| 1:67705483:A:T | F63I | 0.992 |
| 1:67707601:C:A | R29I | 0.992 |
| 1:67705567:C:G | A35P | 0.991 |
| 1:67705521:T:C | D50G | 0.989 |
| 1:67705482:A:C | F63C | 0.987 |
| 1:67705483:A:C | F63V | 0.987 |
| 1:67705486:G:A | P62S | 0.987 |
| 1:67707647:C:G | A14P | 0.987 |
| 1:67705541:A:C | C43W | 0.986 |
| 1:67705465:A:G | C69R | 0.985 |
| 1:67705520:G:C | D50E | 0.985 |
| 1:67705520:G:T | D50E | 0.985 |
| 1:67705521:T:G | D50A | 0.985 |
| 1:67705554:A:C | L39R | 0.985 |
dbSNP variants (sampled 300 via entrez): RS1000026930 (1:67759739 T>C), RS1000072957 (1:67711568 GGAA>G), RS1000073412 (1:67704825 A>G), RS1000137761 (1:67800998 G>A), RS1000148103 (1:67782927 T>C), RS1000168005 (1:67823782 C>T), RS1000179698 (1:67742429 T>C), RS1000191945 (1:67800687 T>C), RS1000225956 (1:67716146 G>A), RS1000258996 (1:67817194 G>A), RS1000275914 (1:67758393 A>G), RS1000278267 (1:67737597 A>T), RS1000287665 (1:67765958 A>C), RS1000304794 (1:67770639 C>G,T), RS1000307644 (1:67765147 C>A)
Disease associations
OMIM: gene MIM:615405 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004602_11 | Mean corpuscular volume | 2.000000e-09 |
| GCST004630_8 | Mean corpuscular hemoglobin | 3.000000e-10 |
| GCST004862_208 | Itch intensity from mosquito bite adjusted by bite size | 4.000000e-06 |
| GCST006107_6 | Upper eyelid morphology | 3.000000e-06 |
| GCST006947_33 | Feeling fed-up | 9.000000e-10 |
| GCST010653_54 | Thyroid stimulating hormone levels | 2.000000e-10 |
| GCST90002390_6 | Mean corpuscular hemoglobin | 4.000000e-36 |
| GCST90002392_170 | Mean corpuscular volume | 2.000000e-31 |
| GCST90002396_135 | Mean reticulocyte volume | 7.000000e-10 |
| GCST90002404_467 | Red cell distribution width | 3.000000e-16 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0008377 | mosquito bite reaction itch intensity measurement |
| EFO:0008378 | mosquito bite reaction size measurement |
| EFO:0009588 | feeling “fed-up” measurement |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0009188 | Red cell distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Tobacco Smoke Pollution | affects expression, decreases methylation, increases expression | 3 |
| Valproic Acid | increases expression | 3 |
| sodium arsenite | increases abundance, increases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Aflatoxin B1 | affects expression, increases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| geldanamycin | increases expression | 1 |
| fenofibric acid | affects binding, increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, decreases expression, increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| pentane | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| GW 7647 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| torcetrapib | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| asparanin A | decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Chelating Agents | affects binding, increases expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Copper | affects binding, increases expression | 1 |
| Cyclophosphamide | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.