GNPTAB
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Also known as KIAA1208MGC4170
Summary
GNPTAB (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta, HGNC:29670) is a protein-coding gene on chromosome 12q23.2, encoding N-acetylglucosamine-1-phosphotransferase subunits alpha/beta (Q3T906). Catalyzes the formation of mannose 6-phosphate (M6P) markers on high mannose type oligosaccharides in the Golgi apparatus.
This gene encodes two of three subunit types of the membrane-bound enzyme N-acetylglucosamine-1-phosphotransferase, a heterohexameric complex composed of two alpha, two beta, and two gamma subunits. The encoded protein is proteolytically cleaved at the Lys928-Asp929 bond to yield mature alpha and beta polypeptides while the gamma subunits are the product of a distinct gene (GeneID 84572). In the Golgi apparatus, the heterohexameric complex catalyzes the first step in the synthesis of mannose 6-phosphate recognition markers on certain oligosaccharides of newly synthesized lysosomal enzymes. These recognition markers are essential for appropriate trafficking of lysosomal enzymes. Mutations in this gene have been associated with both mucolipidosis II and mucolipidosis IIIA.
Source: NCBI Gene 79158 — RefSeq curated summary.
At a glance
- Gene–disease (curated): GNPTAB-mucolipidosis (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 1,790 total — 209 pathogenic, 187 likely-pathogenic
- Phenotypes (HPO): 192
- MANE Select transcript:
NM_024312
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29670 |
| Approved symbol | GNPTAB |
| Name | N-acetylglucosamine-1-phosphate transferase subunits alpha and beta |
| Location | 12q23.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1208, MGC4170 |
| Ensembl gene | ENSG00000111670 |
| Ensembl biotype | protein_coding |
| OMIM | 607840 |
| Entrez | 79158 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 11 protein_coding, 3 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000299314, ENST00000392919, ENST00000549165, ENST00000549194, ENST00000549738, ENST00000549940, ENST00000550352, ENST00000550718, ENST00000552009, ENST00000552681, ENST00000647144, ENST00000917133, ENST00000917134, ENST00000917135, ENST00000917136, ENST00000953730
RefSeq mRNA: 1 — MANE Select: NM_024312
NM_024312
CCDS: CCDS9088
Canonical transcript exons
ENST00000299314 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001101296 | 101770996 | 101771157 |
| ENSE00001101359 | 101786012 | 101786217 |
| ENSE00001155408 | 101780152 | 101780286 |
| ENSE00001155415 | 101780557 | 101780621 |
| ENSE00001155433 | 101789938 | 101790057 |
| ENSE00001265267 | 101745499 | 101747241 |
| ENSE00001265274 | 101749101 | 101749191 |
| ENSE00001265287 | 101757212 | 101757310 |
| ENSE00001265305 | 101761127 | 101761346 |
| ENSE00001265345 | 101796677 | 101796762 |
| ENSE00001265380 | 101760030 | 101760143 |
| ENSE00001265394 | 101761564 | 101761763 |
| ENSE00001265404 | 101766091 | 101766294 |
| ENSE00001265409 | 101768037 | 101768160 |
| ENSE00001265416 | 101770021 | 101770191 |
| ENSE00001265452 | 101764202 | 101765304 |
| ENSE00001319970 | 101770406 | 101770585 |
| ENSE00002380951 | 101830559 | 101830959 |
| ENSE00003587415 | 101788548 | 101788589 |
| ENSE00003594751 | 101753372 | 101753539 |
| ENSE00003653576 | 101757572 | 101757657 |
Expression profiles
Bgee: expression breadth ubiquitous, 290 present calls, max score 97.32.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 21.7076 / max 543.1891, expressed in 1789 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 132911 | 16.7846 | 1748 |
| 132912 | 4.1581 | 1469 |
| 132910 | 0.2583 | 115 |
| 132909 | 0.2207 | 76 |
| 132913 | 0.1746 | 70 |
| 206863 | 0.1113 | 44 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tibia | UBERON:0000979 | 97.32 | gold quality |
| endothelial cell | CL:0000115 | 97.00 | gold quality |
| sural nerve | UBERON:0015488 | 96.86 | gold quality |
| cortical plate | UBERON:0005343 | 96.68 | gold quality |
| parotid gland | UBERON:0001831 | 95.45 | gold quality |
| urethra | UBERON:0000057 | 95.35 | gold quality |
| skin of hip | UBERON:0001554 | 94.83 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 94.57 | gold quality |
| nasopharynx | UBERON:0001728 | 94.55 | gold quality |
| upper leg skin | UBERON:0004262 | 94.34 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 94.22 | gold quality |
| minor salivary gland | UBERON:0001830 | 93.86 | gold quality |
| rectum | UBERON:0001052 | 93.76 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.71 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 93.63 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.60 | gold quality |
| caudate nucleus | UBERON:0001873 | 93.45 | gold quality |
| nucleus accumbens | UBERON:0001882 | 93.39 | gold quality |
| mouth mucosa | UBERON:0003729 | 93.39 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 93.20 | gold quality |
| superficial temporal artery | UBERON:0001614 | 93.17 | gold quality |
| cingulate cortex | UBERON:0003027 | 93.14 | gold quality |
| visceral pleura | UBERON:0002401 | 93.12 | gold quality |
| amygdala | UBERON:0001876 | 93.10 | gold quality |
| lower lobe of lung | UBERON:0008949 | 93.10 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 92.97 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 92.96 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.79 | gold quality |
| putamen | UBERON:0001874 | 92.68 | gold quality |
| renal glomerulus | UBERON:0000074 | 92.64 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 91.56 |
| E-CURD-122 | yes | 44.15 |
| E-MTAB-6678 | yes | 31.65 |
| E-GEOD-125970 | yes | 22.93 |
| E-CURD-112 | yes | 15.30 |
| E-ANND-3 | yes | 15.22 |
| E-GEOD-135922 | yes | 7.64 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
103 targeting GNPTAB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-613 | 99.91 | 71.50 | 1710 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-4697-3P | 99.89 | 67.09 | 1123 |
Literature-anchored findings (GeneRIF, showing 40)
- GNPTAB alpha and beta subunits are encoded by a single cDNA (PMID:16120602)
- results provide evidence that GNPTA encodes a subunit of GlcNAc-1-phosphotransferase defective in individuals with mucolipidosis II (PMID:16200072)
- 15 different mutations in GNPTAB from 18 pedigrees with Mucolipidosis II or mucolipidosis IIIA were found. (PMID:16465621)
- The results of this study confirm that Mucolipidosis (ML) II or ML III phenotype is not due to the localization of the mutations, but rather to the severity of the GNPTA mutations (PMID:16630736)
- A single mutation (c.3503_3504delTC) is the allele causing Mucolipidosis II in the Saguenay-Lac-Saint-Jean population, and its high carrier rate is most likely explained by a founder effect. (PMID:18190596)
- The GNPTAB gene was analyzed in 25 Mucolipidosis II and 15 ML III Japanese patients. (PMID:19197337)
- Fifty-one pathogenic changes in GNPTAB are presented, including 42 novel mutations causing mucolipidoses II and III alpha/beta. (PMID:19617216)
- Mutations within the GNPTAB gene are associated with Mucolipidoses. (PMID:19634183)
- The study led to the identification of 11 different mutations in GNPTAB and GNPTG genes in 13 mucolipidosis II and III patients. (PMID:19659762)
- identified 3 mutations in GNPTAB gene in subjects with stuttering (PMID:20147709)
- proteolytic processing of the gamma-subunit represents a novel mechanism to regulate GlcNAc-1-phosphotransferase activity and the subsequent sorting of lysosomal enzymes (PMID:20489197)
- Patients carrying the c.3503_3504delTC deletion in the N-acetylglucosamine-1-phosphotransferase gene are presented with a common haplotype, which implies a common origin of this mutation in the Mediterranian Region. (PMID:20880125)
- Glu1200Lys mutation in GNPTAB gene is founder mutation associated with persistent stuttering (PMID:20944643)
- By using linkage and mutational analyses, there have identified that the family members contain compound heterozygous mutations of p.R364X and c.2715+1G>A in the GNPTAB gene. (PMID:21549105)
- To date mutations in GNPTAB, GNPTG, and NAGPA have been associated with stuttering. These genes encode the lysosomal enzyme targeting pathway, defective in mucolipidosis. (Review) (PMID:22884963)
- data suggest that the oligomeric type III membrane protein PT complex requires a combinatorial sorting motif that forms a tertiary epitope to be recognized by distinct sites within the coat protein complex II machinery (PMID:23192343)
- The mutation c.2808A>G creates a new splice site in exon 14 of GNPATB gene. (PMID:23566849)
- The DMAP interaction domain of the alpha subunit functions in the selective recognition of acid hydrolase substrates and provides an explanation for the impaired phosphorylation of acid hydrolases in a patient with mucolipidosis II. (PMID:23733939)
- study located two homozygous nonsense mutations in the GNPTAB gene, c.1071G>A (p.W357X) and c.1090C>T (p.R364X) in two patients with mucolipidosis II alpha/beta (PMID:23773965)
- A novel intermediate mucolipidosis II/IIIalphabeta caused by GNPTAB mutation in the cytosolic N-terminal domain. (PMID:24045841)
- both missense and frameshift mutations are associated with a severe clinical phenotype causing retention of the protein in the endoplasmic reticulum and failure to cleave the alpha/beta-subunit precursor protein are associated with a severe clinical phenotype (PMID:24375680)
- Missense mutations impair retention of the catalytically active enzyme in the Golgi complex resulting in mistargeting of the mutant phosphotransferases to lysosomes, where they are degraded, or to the cell surface and release into the medium. (PMID:24550498)
- novel mouse model of MLII homozygous for a patient mutation in the GNPTAB gene. (PMID:25107912)
- SNPs covering GNPTAB, GNPTG and NAGPA were subjected to genotyping, association analysis was performed on all SNPs. Significant association of rs17031962 in GNPTAB and rs882294 in NAGPA with developmental dyslexia in a Chinese population was identified after false discovery rate correction for multiple comparisons. (PMID:25643770)
- Persistent stuttering is associated with mutations in GNPTAB that are generally not found in mucolipidosis . (PMID:26130485)
- GlcNAc-1-phosphotransferase gamma-subunits bind to glycosylated region in the no-similarity domain 2 of alpha-subunit, which is independent on cysteine 70 identified to be responsible for alpha-subunit homodimerization. (PMID:26385638)
- we described five individuals from a large consanguineous Turkish family with MLIIIalpha/beta and identified a novel homozygous missense genetic variant in the alpha subunit of GNPTAB gene in five patients (PMID:26749367)
- These findings serve to explain how GlcNAc-1-phosphotransferase recognizes a large number of proteins that lack a common structural motif. (PMID:26833567)
- GNPTAB mutations are associated with mucolipidosis II. (PMID:27180337)
- Mutations of the GNPTAB gene is associated with mucolipidosis type III. (PMID:27710913)
- GNPTAB missense mutations cause loss of GlcNAc-1-phosphotransferase activity in mucolipidosis type II (PMID:28918368)
- 14 variations were found in GNPTAB, GNPTG and NAGPA genes. (PMID:29289611)
- The diagnosis of Mucolipidosis II is often missed, as it may present with rickets-like picture. In this article, we describe two neonatal mucolipidosis II patients mimicking rickets, and we evaluated them by clinical, metabolic and imaging findings via literature and also emphasized the difficulties in diagnosis of this rare disease. (PMID:30204966)
- Study identifies GNPTAB as a host factor for Ebola virus (EBOV) infection. This requirement is confirmed in primary cells from mucolipidosis II and mucolipidosis III patients with defective GNPTAB variants. An inhibitor of the SKI-1/S1P protease required for GNPTAB activity blocks EBOV infection, suggesting that targeting GNPTAB may be a strategy for a host-targeted antiviral therapy for EBOV. (PMID:30655525)
- Data provide an overview on 258 mutations in GNPTAB including 58 novel ones. Comprehensive functional studies of GNPTAB missense mutations did not only gain insights into the composition and function of the GlcNAc-1-phosphotransferase, but also helped to define genotype-phenotype correlations to predict the clinical outcome in patients with mucolipidosis. (PMID:30882951)
- We evaluated 51 stuttering individuals with a mutation in either the GNPTAB, GNPTG, NAGPA, or AP4E1 gene. Mutation carriers achieved significantly less resolution in PSI following therapy, with PSI scores showing significantly less improvement in individuals who carry a mutation (p = 0.0157, RR = 1.75, OR = 2.92) while the group difference in DWS between carriers and non-carriers was statistically not significant. (PMID:31003007)
- These data suggest that vocalization defects in mice carrying human stuttering mutations in Gnptab derive from abnormalities in astrocytes, particularly in the corpus callosum, and provide support for hypotheses that focus on deficits in interhemispheric communication in stuttering. (PMID:31405983)
- Combined in vitro and in silico analyses of missense mutations in GNPTAB provide new insights into the molecular bases of mucolipidosis II and III alpha/beta. (PMID:31579991)
- Structures of Bacterial MraY and Human GPT Provide Insights into Rational Antibiotic Design. (PMID:32199982)
- Disease-causing missense mutations within the N-terminal transmembrane domain of GlcNAc-1-phosphotransferase impair endoplasmic reticulum translocation or Golgi retention. (PMID:32220096)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gnptab | ENSDARG00000030153 |
| mus_musculus | Gnptab | ENSMUSG00000035311 |
| rattus_norvegicus | Gnptab | ENSRNOG00000005228 |
| drosophila_melanogaster | Gnptab | FBGN0033392 |
| caenorhabditis_elegans | WBGENE00007340 | |
| caenorhabditis_elegans | WBGENE00014666 |
Protein
Protein identifiers
N-acetylglucosamine-1-phosphotransferase subunits alpha/beta — Q3T906 (reviewed: Q3T906)
Alternative names: GlcNAc-1-phosphotransferase subunits alpha/beta, Stealth protein GNPTAB, UDP-N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
All UniProt accessions (6): Q3T906, F8VQW2, H0YIE6, H0YIK3, H0YIU2, Q9BUA5
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the formation of mannose 6-phosphate (M6P) markers on high mannose type oligosaccharides in the Golgi apparatus. M6P residues are required to bind to the M6P receptors (MPR), which mediate the vesicular transport of lysosomal enzymes to the endosomal/prelysosomal compartment.
Subunit / interactions. Hexamer of two alpha, two beta and two gamma (GNPTG) subunits; disulfide-linked. The alpha and/or the beta subunits of the enzyme constitute the catalytic subunits. Interacts with LYSET; facilitates proper localization of GNPTAB.
Subcellular location. Golgi apparatus membrane Golgi apparatus membrane.
Tissue specificity. Expressed in the heart, whole brain, placenta, lung, liver, skeletal muscle, kidney and pancreas.
Post-translational modifications. The alpha- and beta-subunits are generated by a proteolytic cleavage by MBTPS1 protease at the Lys-928-Asp-929 bond.
Disease relevance. Mucolipidosis type II (MLII) [MIM:252500] Fatal, autosomal recessive, lysosomal storage disorder characterized by severe clinical and radiologic features, peculiar fibroblast inclusions, and no excessive mucopolysacchariduria. Congenital dislocation of the hip, thoracic deformities, hernia, and hyperplastic gums are evident soon after birth. The disease is caused by variants affecting the gene represented in this entry. Mucolipidosis type III complementation group A (MLIIIA) [MIM:252600] Autosomal recessive disease of lysosomal enzyme targeting. Clinically MLIII is characterized by restricted joint mobility, skeletal dysplasia, and short stature. Mildly coarsened facial features and thickening of the skin have been described. Cardiac valvular disease and corneal clouding may also occur. Half of the reported patients show learning disabilities or intellectual disability. The disease is caused by variants affecting the gene represented in this entry. Genetic variations in GNPTAB have been suggested to play a role in susceptibility to persistent stuttering. Stuttering is a common speech disorder characterized by repetitions, prolongations, and interruptions in the flow of speech.
Domain organisation. The DMAP1-binding domain mediates substrate recognition. It specifically recognizes a conformation-dependent protein determinant present in acid hydrolases.
Miscellaneous. Due to the low pH in the endosomal/prelysosomal compartment, the lysosomal enzyme-MPR complex dissociates and then the enzyme is delivered to the lysosome. Between 5% and 20% of newly synthesized lysosomal enzymes escape the binding to the MPR in the Golgi apparatus and are secreted. Stealth proteins are part of a protein family that is conserved from bacteria to higher eukaryotes. Family members were first identified in microbes as proteins that help pathogens to elude the host innate immune system. Microbial stealth proteins are most likely involved in the biosynthesis of exopolysaccharides. Stealth proteins are predicted to function as hexose-1-phosphoryltransferases.
Similarity. Belongs to the stealth family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q3T906-1 | 1 | yes |
| Q3T906-2 | 2 |
RefSeq proteins (1): NP_077288* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000800 | Notch_dom | Domain |
| IPR002048 | EF_hand_dom | Domain |
| IPR010506 | DMAP1-bd | Domain |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR021520 | Stealth_CR2 | Domain |
| IPR031356 | Stealth_CR4 | Domain |
| IPR031357 | Stealth_CR3 | Domain |
| IPR031358 | Stealth_CR1 | Domain |
| IPR035993 | Notch-like_dom_sf | Homologous_superfamily |
| IPR041536 | GNPTAB_reg | Domain |
| IPR047141 | Stealth | Family |
Pfam: PF00066, PF06464, PF11380, PF17101, PF17102, PF17103, PF18440
Enzyme classification (BRENDA):
- EC 2.7.8.17 — UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase (BRENDA: 11 organisms, 41 substrates, 24 inhibitors, 33 Km, 18 kcat entries)
Substrate kinetics (BRENDA)
12 substrates with measured Km, best-characterized 12. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| METHYL-ALPHA-D-MANNOSIDE | 0.021–183 | 5 |
| UDP-GLCNAC | 0.021–0.2 | 5 |
| UTEROFERRIN | 0.022–0.065 | 4 |
| CATHEPSIN D | 0.018–0.025 | 3 |
| DNASE I | 0.03–0.06 | 2 |
| MAN9GLCNAC1 OLIGOSACCHARIDE | 3.3–5.7 | 2 |
| METHYL ALPHA-D-MANNOPYRANOSIDE | 33–48 | 2 |
| NPC2 | 0.352–0.367 | 2 |
| PRO-TRIPEPTIDYL PEPTIDASE | 0.11 | 2 |
| RIBONUCLEASE B | 0.916–1.244 | 2 |
| RNASE B | 0.5–0.556 | 2 |
| SOYBEAN AGGLUTININ | 1 | 2 |
Catalyzed reactions (Rhea), 1 shown:
- N(4)-[alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(glycan)]-L-asparaginyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = N(4)-[6-(N-acetyl-alpha-D-glucosaminyl-1-phospho)-alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(glycan)]-L-asparaginyl-[protein] + UMP + H(+) (RHEA:13581)
UniProt features (145 total): sequence variant 45, helix 28, strand 25, glycosylation site 11, binding site 10, mutagenesis site 5, turn 4, disulfide bond 4, chain 2, transmembrane region 2, splice variant 2, repeat 2, domain 2, sequence conflict 2, site 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9BGF | ELECTRON MICROSCOPY | 2.9 |
| 7S05 | ELECTRON MICROSCOPY | 3.1 |
| 7S06 | ELECTRON MICROSCOPY | 3.3 |
| 9BGG | ELECTRON MICROSCOPY | 3.4 |
| 2N6D | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q3T906-F1 | 72.15 | 0.24 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 928–929 (cleavage; by mbtps1)
Ligand- & substrate-binding residues (10): 467; 516; 531; 534; 1018; 1020; 1022; 1029; 449; 464
Disulfide bonds (4): 438–461, 452–468, 505–528, 519–535
Glycosylation sites (11): 83, 114, 148, 179, 250, 614, 699, 729, 829, 1009, 1129
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 346 | partially cleaved by mbtps1. |
| 357 | abolishes proteolytic cleavage by mbtps1. |
| 925 | abolishes proteolytic cleavage by mbtps1. |
| 927 | abolishes proteolytic cleavage by mbtps1. |
| 928 | abolishes proteolytic cleavage by mbtps1. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 580 (showing top):
GOBP_N_GLYCAN_PROCESSING, GOBP_LYSOSOMAL_TRANSPORT, GOBP_VACUOLE_ORGANIZATION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOBP_PROTEIN_N_LINKED_GLYCOSYLATION, XU_HGF_TARGETS_REPRESSED_BY_AKT1_DN, GOBP_PROTEIN_TARGETING, GOBP_VACUOLAR_TRANSPORT, KEGG_LYSOSOME, GOBP_CARBOHYDRATE_PHOSPHORYLATION, SABATES_COLORECTAL_ADENOMA_SIZE_DN, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_PROTEIN_LOCALIZATION_TO_LYSOSOME, ONKEN_UVEAL_MELANOMA_UP
GO Biological Process (7): lysosome organization (GO:0007040), N-glycan processing to lysosome (GO:0016256), secretion of lysosomal enzymes (GO:0033299), carbohydrate phosphorylation (GO:0046835), protein secretion (GO:0009306), protein transport (GO:0015031), establishment of localization in cell (GO:0051649)
GO Molecular Function (6): UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity (GO:0003976), calcium ion binding (GO:0005509), protein binding (GO:0005515), transferase activity (GO:0016740), transferase activity, transferring phosphorus-containing groups (GO:0016772), metal ion binding (GO:0046872)
GO Cellular Component (3): Golgi membrane (GO:0000139), Golgi apparatus (GO:0005794), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| lytic vacuole organization | 1 |
| N-glycan processing | 1 |
| protein targeting to lysosome | 1 |
| protein secretion | 1 |
| carbohydrate metabolic process | 1 |
| phosphorylation | 1 |
| protein transport | 1 |
| secretion by cell | 1 |
| establishment of protein localization to extracellular region | 1 |
| protein localization to extracellular region | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| phosphotransferase activity, for other substituted phosphate groups | 1 |
| metal ion binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| cation binding | 1 |
| Golgi apparatus | 1 |
| bounding membrane of organelle | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1342 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GNPTAB | GNPTG | Q9UJJ9 | 996 |
| GNPTAB | NAGPA | Q9UK23 | 975 |
| GNPTAB | PURA | Q00577 | 872 |
| GNPTAB | ADK | P55263 | 817 |
| GNPTAB | MDH2 | P40926 | 797 |
| GNPTAB | RAD51 | Q06609 | 699 |
| GNPTAB | FUCA2 | Q9BTY2 | 598 |
| GNPTAB | AP4E1 | Q9UPM8 | 583 |
| GNPTAB | MBTPS1 | Q14703 | 568 |
| GNPTAB | DMAP1 | Q9NPF5 | 566 |
| GNPTAB | NAGLU | P54802 | 498 |
| GNPTAB | MANBA | O00462 | 494 |
| GNPTAB | TG | P01266 | 491 |
| GNPTAB | CNTNAP2 | Q9UHC6 | 488 |
| GNPTAB | ATP2C2 | O75185 | 470 |
IntAct
93 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RETREG3 | PLSCR1 | psi-mi:“MI:0914”(association) | 0.640 |
| GNPTG | GNPTAB | psi-mi:“MI:0914”(association) | 0.620 |
| GNPTAB | GNPTG | psi-mi:“MI:0915”(physical association) | 0.620 |
| B3GALT2 | GNPTAB | psi-mi:“MI:0915”(physical association) | 0.620 |
| ZNF250 | GNPTAB | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNPTAB | PSMA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNPTAB | FAM90A1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNPTAB | AEN | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNPTAB | STAMBPL1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PSMA1 | GNPTAB | psi-mi:“MI:0915”(physical association) | 0.560 |
| STAMBPL1 | GNPTAB | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNPTAB | ZNF250 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AEN | GNPTAB | psi-mi:“MI:0915”(physical association) | 0.560 |
| PICK1 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| IGSF6 | CETN3 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM3B | LRP5 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| B3GALT2 | LTN1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (83): GNPTAB (Two-hybrid), GNPTAB (Two-hybrid), GNPTAB (Two-hybrid), GNPTAB (Two-hybrid), GNPTAB (Two-hybrid), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), GNPTAB (Affinity Capture-MS)
ESM2 similar proteins: B3H5R0, B5DEL3, E2AX35, E9PVB5, F4J2C8, F4JMI5, O00237, O13682, O61608, P22815, P85831, Q09298, Q0WQD2, Q0WV13, Q10025, Q3T906, Q499E0, Q5RGJ8, Q5TEA3, Q5XV99, Q69ZN6, Q6DW74, Q6DW76, Q701R0, Q76B58, Q8GWT1, Q8GWW4, Q8GZ81, Q8RXE1, Q8RXS6, Q8W4A7, Q93ZX7, Q949Q1, Q96AE7, Q9EPZ8, Q9FH36, Q9FWA4, Q9FZ37, Q9H7T0, Q9LE59
Diamond homologs: O68215, O69851, O69853, P9WGD0, P9WGD1, Q3T906, Q4K0S9, Q50025, Q51151, Q5RGJ8, Q5YQ21, Q69ZN6, Q714U9, Q7U184, Q7X4S1, Q83U59, Q84BK9, Q84CZ9, Q84D00, Q8GPD3, Q8KSB4, Q9EVX1, Q9JWW8, Q9L1I2, Q9L1I4, D0U690, F5HID8, Q4JZ13, Q4K2S1, Q4K2U1, Q5KA65, Q69AA9, Q83YR8, Q848R7, Q84CH1, Q8GP72, Q9RGR0, E6RCE9, Q4K0R3, Q6L5Q5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 94 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| R-HSA-425366 | 5 | 15.4× | 4e-03 |
| SLC-mediated transmembrane transport | 8 | 8.0× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1790 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 209 |
| Likely pathogenic | 187 |
| Uncertain significance | 414 |
| Likely benign | 742 |
| Benign | 54 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1012255 | NM_024312.5(GNPTAB):c.2980_2983del (p.Ala994fs) | Pathogenic |
| 1071081 | NM_024312.5(GNPTAB):c.1491del (p.Gly498fs) | Pathogenic |
| 1072768 | NM_024312.5(GNPTAB):c.2657_2660del (p.Asp886fs) | Pathogenic |
| 1072782 | NM_024312.5(GNPTAB):c.2423del (p.Leu808fs) | Pathogenic |
| 1072926 | NM_024312.5(GNPTAB):c.2868_2869del (p.Met957fs) | Pathogenic |
| 1072933 | NM_024312.5(GNPTAB):c.3345del (p.Met1116fs) | Pathogenic |
| 1073529 | NM_024312.5(GNPTAB):c.3300_3301del (p.Lys1100fs) | Pathogenic |
| 1074624 | NM_024312.5(GNPTAB):c.1906del (p.Arg636fs) | Pathogenic |
| 1075110 | NM_024312.5(GNPTAB):c.2737_2738del (p.Gln913fs) | Pathogenic |
| 1075885 | NM_024312.5(GNPTAB):c.178_179del (p.Ile60fs) | Pathogenic |
| 1252037 | NM_024312.5(GNPTAB):c.3653del (p.Thr1218fs) | Pathogenic |
| 1323026 | NM_024312.5(GNPTAB):c.1831del (p.Ile611fs) | Pathogenic |
| 1323027 | NM_024312.5(GNPTAB):c.1567T>C (p.Cys523Arg) | Pathogenic |
| 1362626 | NM_024312.5(GNPTAB):c.269del (p.Leu90fs) | Pathogenic |
| 1364183 | NM_024312.5(GNPTAB):c.3100del (p.Ala1034fs) | Pathogenic |
| 1382090 | NM_024312.5(GNPTAB):c.2675del (p.Leu892fs) | Pathogenic |
| 1385807 | NM_024312.5(GNPTAB):c.2334_2338del (p.Ser778fs) | Pathogenic |
| 1388742 | NM_024312.5(GNPTAB):c.3034C>T (p.Gln1012Ter) | Pathogenic |
| 1393484 | NM_024312.5(GNPTAB):c.29_32dup (p.Thr12fs) | Pathogenic |
| 1396985 | NM_024312.5(GNPTAB):c.1186G>T (p.Glu396Ter) | Pathogenic |
| 1399558 | NM_024312.5(GNPTAB):c.2654_2655del (p.Thr885fs) | Pathogenic |
| 1416350 | NM_024312.5(GNPTAB):c.88_89del (p.Thr30fs) | Pathogenic |
| 1424471 | NM_024312.5(GNPTAB):c.2303_2306del (p.Lys768fs) | Pathogenic |
| 1429731 | NM_024312.5(GNPTAB):c.1936dup (p.Gln646fs) | Pathogenic |
| 1431816 | NM_024312.5(GNPTAB):c.1503_1521dup (p.Gly508delinsCysLeuLeuLeuTer) | Pathogenic |
| 1437885 | NM_024312.5(GNPTAB):c.1122dup (p.Arg375fs) | Pathogenic |
| 1445251 | NM_024312.5(GNPTAB):c.1292T>A (p.Leu431Ter) | Pathogenic |
| 1451810 | NM_024312.5(GNPTAB):c.1499del (p.Asn500fs) | Pathogenic |
| 1451897 | NM_024312.5(GNPTAB):c.2923del (p.Glu975fs) | Pathogenic |
| 1452514 | NM_024312.5(GNPTAB):c.2098dup (p.Ile700fs) | Pathogenic |
SpliceAI
3445 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:101749187:CCCTC:C | acceptor_gain | 1.0000 |
| 12:101749188:CCTCC:C | acceptor_gain | 1.0000 |
| 12:101750085:T:A | donor_gain | 1.0000 |
| 12:101753375:T:A | donor_gain | 1.0000 |
| 12:101753416:T:A | donor_gain | 1.0000 |
| 12:101753536:CTTC:C | acceptor_gain | 1.0000 |
| 12:101753537:TTC:T | acceptor_gain | 1.0000 |
| 12:101753538:TCC:T | acceptor_loss | 1.0000 |
| 12:101753540:C:CC | acceptor_gain | 1.0000 |
| 12:101753540:CTGA:C | acceptor_loss | 1.0000 |
| 12:101753541:T:G | acceptor_loss | 1.0000 |
| 12:101757308:AACC:A | acceptor_loss | 1.0000 |
| 12:101757309:ACC:A | acceptor_loss | 1.0000 |
| 12:101757310:CCT:C | acceptor_loss | 1.0000 |
| 12:101757312:T:A | acceptor_loss | 1.0000 |
| 12:101760023:CACTT:C | donor_loss | 1.0000 |
| 12:101760024:ACTTA:A | donor_loss | 1.0000 |
| 12:101760025:CTTA:C | donor_loss | 1.0000 |
| 12:101760026:TTA:T | donor_loss | 1.0000 |
| 12:101760027:TACC:T | donor_loss | 1.0000 |
| 12:101760028:A:AC | donor_gain | 1.0000 |
| 12:101760028:A:C | donor_loss | 1.0000 |
| 12:101760028:AC:A | donor_gain | 1.0000 |
| 12:101760029:C:CG | donor_gain | 1.0000 |
| 12:101760029:CC:C | donor_gain | 1.0000 |
| 12:101760029:CCA:C | donor_gain | 1.0000 |
| 12:101760029:CCAG:C | donor_gain | 1.0000 |
| 12:101760029:CCAGG:C | donor_gain | 1.0000 |
| 12:101760139:AAATC:A | acceptor_gain | 1.0000 |
| 12:101760140:AATC:A | acceptor_gain | 1.0000 |
AlphaMissense
8391 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:101753471:A:G | L1168P | 1.000 |
| 12:101753474:A:T | V1167D | 1.000 |
| 12:101753521:A:C | N1151K | 1.000 |
| 12:101753521:A:T | N1151K | 1.000 |
| 12:101753527:G:C | C1149W | 1.000 |
| 12:101753529:A:G | C1149R | 1.000 |
| 12:101761606:G:T | P958H | 1.000 |
| 12:101761675:A:G | L935P | 1.000 |
| 12:101766135:C:T | C523Y | 1.000 |
| 12:101766164:C:A | W513C | 1.000 |
| 12:101766164:C:G | W513C | 1.000 |
| 12:101766166:A:G | W513R | 1.000 |
| 12:101766166:A:T | W513R | 1.000 |
| 12:101768063:C:G | C461S | 1.000 |
| 12:101768064:A:G | C461R | 1.000 |
| 12:101768064:A:T | C461S | 1.000 |
| 12:101768078:C:G | C456S | 1.000 |
| 12:101768078:C:T | C456Y | 1.000 |
| 12:101768079:A:G | C456R | 1.000 |
| 12:101768079:A:T | C456S | 1.000 |
| 12:101768107:C:A | W446C | 1.000 |
| 12:101768107:C:G | W446C | 1.000 |
| 12:101768109:A:G | W446R | 1.000 |
| 12:101768109:A:T | W446R | 1.000 |
| 12:101768119:G:C | C442W | 1.000 |
| 12:101768120:C:G | C442S | 1.000 |
| 12:101768121:A:G | C442R | 1.000 |
| 12:101768121:A:T | C442S | 1.000 |
| 12:101768132:C:G | C438S | 1.000 |
| 12:101768133:A:G | C438R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000006366 (12:101822244 T>C), RS1000029167 (12:101783712 A>T), RS1000057659 (12:101752931 C>G), RS1000094294 (12:101796447 C>T), RS1000099987 (12:101789907 C>A,T), RS1000162259 (12:101777281 C>G), RS1000163693 (12:101766741 A>G), RS1000184705 (12:101786841 G>A), RS1000226888 (12:101808267 A>G,T), RS1000263810 (12:101814729 A>C), RS1000277945 (12:101796265 G>T), RS1000359565 (12:101831045 G>A,T), RS1000362926 (12:101745848 A>G), RS1000378632 (12:101801967 G>A), RS1000387845 (12:101825325 C>G)
Disease associations
OMIM: gene MIM:607840 | disease phenotypes: MIM:252500, MIM:252600, MIM:252900, MIM:150600, MIM:181440
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mucolipidosis type II | Definitive | Autosomal recessive |
| mucolipidosis type III, alpha/beta | Definitive | Autosomal recessive |
| mucolipidosis | Definitive | Autosomal recessive |
| GNPTAB-mucolipidosis | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| GNPTAB-mucolipidosis | Definitive | AR |
Mondo (7): mucolipidosis type II (MONDO:0009650), mucolipidosis type III, alpha/beta (MONDO:0018931), mucolipidosis (MONDO:0019248), GNPTAB-mucolipidosis (MONDO:0100122), mucopolysaccharidosis type 3A (MONDO:0009655), Legg-Calve-Perthes disease (MONDO:0007885), Scheuermann disease (MONDO:0008410)
Orphanet (8): Mucolipidosis type III alpha/beta (Orphanet:423461), Mucolipidosis type II (Orphanet:576), Mucolipidosis type III (Orphanet:577), Mucolipidosis (Orphanet:79212), Mucopolysaccharidosis type 3 (Orphanet:581), Sanfilippo syndrome type A (Orphanet:79269), Legg-Calvé-Perthes disease (Orphanet:2380), NON RARE IN EUROPE: Scheuermann’s disease (Orphanet:3135)
HPO phenotypes
192 total (30 of 192 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000105 | Enlarged kidney |
| HP:0000154 | Wide mouth |
| HP:0000158 | Macroglossia |
| HP:0000212 | Gingival overgrowth |
| HP:0000243 | Trigonocephaly |
| HP:0000252 | Microcephaly |
| HP:0000280 | Coarse facial features |
| HP:0000286 | Epicanthus |
| HP:0000293 | Full cheeks |
| HP:0000303 | Mandibular prognathia |
| HP:0000316 | Hypertelorism |
| HP:0000341 | Narrow forehead |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000369 | Low-set ears |
| HP:0000388 | Otitis media |
| HP:0000403 | Recurrent otitis media |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000463 | Anteverted nares |
| HP:0000470 | Short neck |
| HP:0000484 | Hyperopic astigmatism |
| HP:0000485 | Megalocornea |
| HP:0000488 | Retinopathy |
| HP:0000520 | Proptosis |
| HP:0000546 | Retinal degeneration |
| HP:0000586 | Shallow orbits |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006143_7 | Bone mineral density (total hip) | 3.000000e-06 |
| GCST010703_2 | Brain morphology (MOSTest) | 3.000000e-37 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007702 | hip bone mineral density |
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007873 | Legg-Calve-Perthes Disease | C05.116.852.175.570 |
| D009081 | Mucolipidoses | C05.116.198.371; C10.228.140.163.100.435.590; C16.320.565.189.435.590; C16.320.565.202.670; C16.320.565.595.554.590; C18.452.132.100.435.590; C18.452.648.189.435.590; C18.452.648.202.670; C18.452.648.595.554.590 |
| D012544 | Scheuermann Disease | C05.116.821.500.500; C05.116.900.800.500.500; C05.116.900.808.500 |
| C538602 | Mucolipidosis 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Valproic Acid | increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| GSK-J4 | increases expression | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression, increases methylation | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| potassium chromate(VI) | decreases expression, affects cotreatment | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| bisphenol S | increases methylation | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Ethanol | increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Cisplatin | increases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Diethylstilbestrol | decreases expression | 1 |
| Doxorubicin | affects response to substance | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Polychlorinated Biphenyls | affects expression | 1 |
| Quercetin | decreases expression | 1 |
| Ribonucleotides | affects binding | 1 |
Cellosaurus cell lines
34 cell lines: 27 finite cell line, 3 transformed cell line, 3 cancer cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_9Q85 | GM00080 | Finite cell line | Female |
| CVCL_9Q86 | GM00081 | Finite cell line | Male |
| CVCL_9Q87 | GM01586 | Finite cell line | Male |
| CVCL_9Q88 | GM01589 | Finite cell line | Male |
| CVCL_9Q89 | GM01590 | Finite cell line | Female |
| CVCL_9Q90 | GM02273 | Finite cell line | Male |
| CVCL_9Q91 | GM02660 | Transformed cell line | Female |
| CVCL_9Q92 | GM02687 | Transformed cell line | Male |
| CVCL_9Q93 | GM03066 | Finite cell line | Female |
| CVCL_9R60 | GM00113 | Finite cell line | Female |
Clinical trials (associated diseases)
33 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04360265 | PHASE3 | ENROLLING_BY_INVITATION | Follow-up Study of AAV-Mediated Gene Transfer (UX111; Previously Known as ABO-102) for MPS Type IIIA |
| NCT00208468 | PHASE3 | TERMINATED | A Randomised Multi-centre Study to Compare the Long-term Performance of the Future Hip to 3 Other Implants in Primary Total Hip Replacement |
| NCT00176917 | PHASE2 | COMPLETED | Stem Cell Transplantation for Hurler |
| NCT00383448 | PHASE2 | COMPLETED | HSCT for High Risk Inherited Inborn Errors |
| NCT06567769 | PHASE1 | RECRUITING | Phase 1 Study of GC1130A in Patients With Sanfilippo Syndrome Type A (MPS IIIA) |
| NCT00005900 | Not specified | UNKNOWN | Study of Pulmonary Complications in Pediatric Patients With Storage Disorders Undergoing Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT01891422 | Not specified | COMPLETED | Longitudinal Studies of the Glycoproteinoses |
| NCT02716246 | PHASE2/PHASE3 | RECRUITING | Phase I/II/III Gene Transfer Clinical Trial of scAAV9.U1a.hSGSH |
| NCT03612869 | PHASE2/PHASE3 | UNKNOWN | Study of AAVrh10-h.SGSH Gene Therapy in Patients With Mucopolysaccharidosis Type IIIA (MPS IIIA) |
| NCT03423186 | PHASE1/PHASE2 | COMPLETED | A Study to Assess the Safety and Tolerability of SOBI003 in Pediatric MPS IIIA Patients |
| NCT03811028 | PHASE1/PHASE2 | COMPLETED | A Study to Assess the Safety, Tolerability, and Efficacy of Long-term SOBI003 Treatment in Pediatric MPS IIIA Patients |
| NCT04088734 | PHASE1/PHASE2 | TERMINATED | Gene Transfer Study of ABO-102 in Patients With Middle and Advanced Phases of MPS IIIA Disease |
| NCT04201405 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Gene Therapy with Modified Autologous Hematopoietic Stem Cells for Patients with Mucopolysaccharidosis Type IIIA |
| NCT06181136 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Study of DNL126 in Pediatric Participants With Mucopolysaccharidosis Type IIIA (Sanfilippo Syndrome Type A) |
| NCT01047306 | Not specified | COMPLETED | A Study of Patients With Sanfilippo Syndrome Type A (MPS IIIA) |
| NCT01873911 | Not specified | COMPLETED | Neurobehavioral Phenotypes in MPS III |
| NCT02037880 | Not specified | COMPLETED | Natural History Studies of Mucopolysaccharidosis III |
| NCT04918641 | Not specified | UNKNOWN | Natural History Observational Study of MPS IIIa in SMC |
| NCT01026909 | Not specified | TERMINATED | Intraarticular Corticosteroid Therapy in Perthes Disease. |
| NCT02040714 | Not specified | ENROLLING_BY_INVITATION | Multicenter Prospective Cohort Study on Current Treatments of Legg-Calvé-Perthes Disease |
| NCT02087436 | Not specified | COMPLETED | Taperloc Complete Microplasty vs Taperloc Complete Standard: Randomized Controlled Study on Bone Mineral Density |
| NCT02087449 | Not specified | TERMINATED | Evaluate E1 Wear, Clinical Performance of E1 Liner in THA in Korean Patient Population |
| NCT02676271 | Not specified | COMPLETED | The Long Term Outcome of Varus Derotational Osteotomy for Legg-Calvé-Perthes’ Disease |
| NCT02795494 | Not specified | UNKNOWN | WOMAC Hip Score in Children and Adolescents With Perthes Disease |
| NCT03885960 | Not specified | ACTIVE_NOT_RECRUITING | Perthes Disease in Norway |
| NCT05734651 | Not specified | RECRUITING | PROMIS Evaluation Study |
| NCT05840146 | Not specified | COMPLETED | Kineesiotaping for Patients With LCPD |
| NCT06823089 | Not specified | RECRUITING | Early Feasibility Study of Cartilage Defect Repair |
| NCT07122323 | Not specified | ENROLLING_BY_INVITATION | Robotic Arm-assisted THA Vs. Conventional THA in Legg-Calvé-Perthes Disease |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT03851367 | Not specified | COMPLETED | Sling Suspension Versus Gym Balls in the Treatment of Juvenile Spinal Osteochondrosis |
| NCT04924556 | Not specified | UNKNOWN | The Effect of Rıgıd Brace on Spinopelvic Parameters and GAP Score in Adolescents With Structural Hyperkyphosis |
| NCT07117448 | Not specified | COMPLETED | Clinical and Radiological Correlates of Balance, Pain and Body Image in Adolescents With Scheuermann’s Kyphosis |
Related Atlas pages
- Associated diseases: mucolipidosis type II, mucolipidosis type III, alpha/beta, mucolipidosis, GNPTAB-mucolipidosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): GNPTAB-mucolipidosis, Legg-Calve-Perthes disease, mucolipidosis, mucolipidosis type II, mucolipidosis type III, alpha/beta, mucopolysaccharidosis type 3A, Scheuermann disease