GPATCH2
gene geneOn this page
Also known as FLJ10252CT110PPP1R30Pfa1
Summary
GPATCH2 (G-patch domain containing 2, HGNC:25499) is a protein-coding gene on chromosome 1q41, encoding G patch domain-containing protein 2 (Q9NW75). Enhances the ATPase activity of DHX15 in vitro.
The gene encodes a nuclear factor that may play a role in spermatogenesis and in tumor growth during breast cancer. The encoded protein contains a G-patch domain with an RNA binding motif. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 55105 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 79 total — 2 pathogenic
- MANE Select transcript:
NM_018040
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25499 |
| Approved symbol | GPATCH2 |
| Name | G-patch domain containing 2 |
| Location | 1q41 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ10252, CT110, PPP1R30, Pfa1 |
| Ensembl gene | ENSG00000092978 |
| Ensembl biotype | protein_coding |
| OMIM | 616836 |
| Entrez | 55105 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 7 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000366934, ENST00000366935, ENST00000470014, ENST00000485274, ENST00000489246, ENST00000885578, ENST00000885579, ENST00000911526, ENST00000911527, ENST00000911528
RefSeq mRNA: 2 — MANE Select: NM_018040
NM_001297754, NM_018040
CCDS: CCDS1518, CCDS73031
Canonical transcript exons
ENST00000366935 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000792402 | 217619783 | 217620499 |
| ENSE00000959524 | 217614141 | 217614202 |
| ENSE00000959525 | 217610889 | 217611071 |
| ENSE00001205102 | 217449249 | 217449337 |
| ENSE00001205104 | 217491680 | 217491750 |
| ENSE00001443042 | 217426992 | 217431365 |
| ENSE00003546089 | 217498356 | 217498395 |
| ENSE00003642465 | 217610321 | 217610400 |
| ENSE00003683435 | 217514822 | 217514889 |
| ENSE00003850311 | 217630916 | 217631090 |
Expression profiles
Bgee: expression breadth ubiquitous, 239 present calls, max score 98.60.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 20.7147 / max 344.4867, expressed in 1750 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 17500 | 20.3711 | 1750 |
| 17499 | 0.3436 | 163 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 98.60 | gold quality |
| sperm | CL:0000019 | 95.88 | gold quality |
| male germ cell | CL:0000015 | 91.89 | gold quality |
| calcaneal tendon | UBERON:0003701 | 90.37 | gold quality |
| endothelial cell | CL:0000115 | 89.58 | gold quality |
| tendon | UBERON:0000043 | 86.63 | gold quality |
| adrenal tissue | UBERON:0018303 | 86.14 | gold quality |
| secondary oocyte | CL:0000655 | 85.77 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.19 | gold quality |
| visceral pleura | UBERON:0002401 | 84.22 | gold quality |
| ventricular zone | UBERON:0003053 | 83.95 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.27 | gold quality |
| left testis | UBERON:0004533 | 82.34 | gold quality |
| gall bladder | UBERON:0002110 | 82.31 | gold quality |
| testis | UBERON:0000473 | 82.05 | gold quality |
| right testis | UBERON:0004534 | 82.00 | gold quality |
| sural nerve | UBERON:0015488 | 80.82 | gold quality |
| colonic epithelium | UBERON:0000397 | 80.62 | gold quality |
| cortical plate | UBERON:0005343 | 80.50 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 80.46 | gold quality |
| rectum | UBERON:0001052 | 80.42 | gold quality |
| pleura | UBERON:0000977 | 80.35 | gold quality |
| ganglionic eminence | UBERON:0004023 | 80.26 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 79.96 | gold quality |
| thyroid gland | UBERON:0002046 | 79.77 | gold quality |
| right uterine tube | UBERON:0001302 | 79.70 | gold quality |
| bronchial epithelial cell | CL:0002328 | 79.51 | gold quality |
| tibia | UBERON:0000979 | 79.36 | gold quality |
| tibial nerve | UBERON:0001323 | 79.36 | gold quality |
| mucosa of stomach | UBERON:0001199 | 79.09 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 397.41 |
| E-ANND-3 | yes | 6.33 |
| E-GEOD-75367 | no | 183.82 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
250 targeting GPATCH2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
Literature-anchored findings (GeneRIF, showing 2)
- Involvement of GPATCH2 overexpression in breast carcinogensis is reported. (PMID:19432882)
- GPATC2 may be involved in inhibiting G1-S phase transition in 293T cells. (PMID:25376275)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gpatch2 | ENSDARG00000101260 |
| mus_musculus | Gpatch2 | ENSMUSG00000039210 |
| rattus_norvegicus | Gpatch2 | ENSRNOG00000002512 |
Paralogs (1): GPATCH2L (ENSG00000089916)
Protein
Protein identifiers
G patch domain-containing protein 2 — Q9NW75 (reviewed: Q9NW75)
All UniProt accessions (1): Q9NW75
UniProt curated annotations — full annotation on UniProt →
Function. Enhances the ATPase activity of DHX15 in vitro.
Subunit / interactions. Interacts with DHX15.
Subcellular location. Nucleus speckle. Nucleus. Nucleolus.
Tissue specificity. Testis.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NW75-1 | 1 | yes |
| Q9NW75-2 | 2 |
RefSeq proteins (2): NP_001284683, NP_060510* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000467 | G_patch_dom | Domain |
| IPR051189 | Splicing_assoc_domain | Family |
Pfam: PF01585
UniProt features (17 total): modified residue 4, compositionally biased region 4, region of interest 3, splice variant 2, sequence conflict 2, chain 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NW75-F1 | 55.60 | 0.06 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 117, 146, 195, 115
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 189 (showing top):
ELVIDGE_HYPOXIA_DN, GOZGIT_ESR1_TARGETS_DN, WANG_LMO4_TARGETS_DN, MODULE_206, HP1SITEFACTOR_Q6, DODD_NASOPHARYNGEAL_CARCINOMA_UP, AACTTT_UNKNOWN, AML1_01, BERNARD_PPAPDC1B_TARGETS_UP, WALLACE_PROSTATE_CANCER_RACE_DN, GOCC_NUCLEAR_SPECK, GOCC_NUCLEAR_BODY, LIU_SOX4_TARGETS_DN, GOCC_RIBONUCLEOPROTEIN_GRANULE, CHEN_HOXA5_TARGETS_9HR_UP
GO Biological Process (0):
GO Molecular Function (2): nucleic acid binding (GO:0003676), protein binding (GO:0005515)
GO Cellular Component (3): nucleus (GO:0005634), nucleolus (GO:0005730), nuclear speck (GO:0016607)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular membraneless organelle | 1 |
| nuclear ribonucleoprotein granule | 1 |
Protein interactions and networks
STRING
696 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPATCH2 | DHX15 | O43143 | 948 |
| GPATCH2 | TFIP11 | Q9UBB9 | 653 |
| GPATCH2 | LTV1 | Q96GA3 | 637 |
| GPATCH2 | NOB1 | Q9ULX3 | 629 |
| GPATCH2 | SPATA17 | Q96L03 | 621 |
| GPATCH2 | RRP15 | Q9Y3B9 | 608 |
| GPATCH2 | KCTD3 | Q9Y597 | 532 |
| GPATCH2 | RIOK2 | Q9BVS4 | 510 |
| GPATCH2 | ACSL4 | O60488 | 474 |
| GPATCH2 | RIOK1 | Q9BRS2 | 455 |
| GPATCH2 | OR13C3 | Q8NGS6 | 450 |
| GPATCH2 | APP | P05067 | 444 |
| GPATCH2 | GPX4 | P36969 | 435 |
| GPATCH2 | CMTR2 | Q8IYT2 | 414 |
| GPATCH2 | BRINP3 | Q76B58 | 407 |
IntAct
24 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CSNK2A2 | EIF3J | psi-mi:“MI:0914”(association) | 0.790 |
| COMMD4 | VPS26C | psi-mi:“MI:0914”(association) | 0.730 |
| CSNK2B | NMT2 | psi-mi:“MI:0914”(association) | 0.660 |
| CSNK2A2 | PES1 | psi-mi:“MI:0914”(association) | 0.640 |
| PPP1CA | GPATCH2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPATCH2 | SMC3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| EGLN3 | FAM168B | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2A2 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2A1 | EIF3F | psi-mi:“MI:0914”(association) | 0.350 |
| COPA | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| COPE | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2A1 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2A2 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2B | OSBPL8 | psi-mi:“MI:0914”(association) | 0.350 |
| SYT2 | ARHGAP10 | psi-mi:“MI:0914”(association) | 0.350 |
| FGF11 | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.350 |
| FGF12 | SUPT5H | psi-mi:“MI:0914”(association) | 0.350 |
| GPATCH2 | LRP5 | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2A2 | SAP18 | psi-mi:“MI:0914”(association) | 0.350 |
| SBDS | RPSA2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| DDX6 | RPSA2 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (49): GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-RNA), GPATCH2 (Affinity Capture-MS), GPATCH2 (Affinity Capture-MS), PICK1 (Two-hybrid), CSNK2A1 (Two-hybrid), TSNAX (Two-hybrid), MAGEB4 (Two-hybrid), DPY30 (Two-hybrid), SMC3 (Proximity Label-MS)
ESM2 similar proteins: A0A5N6H279, A6NDR6, A7J1T0, A7J1T2, B3P851, B4IC49, B4PRU6, C5DH39, C5DZR8, F4J6F6, M0R5D6, O43283, O54835, O70436, O88738, P05549, P06434, P06435, P16794, P42003, P46934, P97368, Q05323, Q0P4S0, Q11107, Q15796, Q1HKZ5, Q1W668, Q21733, Q27571, Q387Y5, Q567C6, Q56I99, Q56XX3, Q5R7C0, Q5R8X7, Q5YDB6, Q62432, Q6DIB4, Q77DJ5
Diamond homologs: A0JMV4, A4IGK4, A4L691, A5DSB5, B2GV05, P15771, P52756, P70501, P98175, Q0IIX9, Q17784, Q1RMU5, Q5ZII9, Q66J74, Q68FU8, Q6C233, Q6DDU9, Q7TN31, Q7TQC7, Q8CH02, Q8CH09, Q8IWZ8, Q8IX01, Q8N302, Q91YE7, Q94C11, Q96BK5, Q99KG3, Q9CZX5, Q9NW75, Q9UTK6, P78332, A5DEF8, A6ZRL6, A7TQN2, O74363, O94585, P53866, Q59UG4, Q6BYP9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
79 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 63 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 443565 | GRCh37/hg19 1q41(chr1:217699328-218689648)x1 | Pathogenic |
| 60082 | GRCh38/hg38 1q41(chr1:217452423-218818361)x1 | Pathogenic |
SpliceAI
2861 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:217491675:CTTA:C | donor_loss | 1.0000 |
| 1:217491676:TTA:T | donor_loss | 1.0000 |
| 1:217491677:TA:T | donor_loss | 1.0000 |
| 1:217491678:ACCT:A | donor_loss | 1.0000 |
| 1:217491679:C:CT | donor_loss | 1.0000 |
| 1:217491679:CCTG:C | donor_gain | 1.0000 |
| 1:217491751:C:CC | acceptor_gain | 1.0000 |
| 1:217491756:CAAAG:C | acceptor_gain | 1.0000 |
| 1:217491760:G:C | acceptor_gain | 1.0000 |
| 1:217491760:G:GC | acceptor_gain | 1.0000 |
| 1:217491776:A:C | acceptor_gain | 1.0000 |
| 1:217514814:GTACT:G | donor_loss | 1.0000 |
| 1:217514815:TAC:T | donor_loss | 1.0000 |
| 1:217514816:ACT:A | donor_loss | 1.0000 |
| 1:217514818:TCA:T | donor_loss | 1.0000 |
| 1:217514819:CACT:C | donor_loss | 1.0000 |
| 1:217514820:A:AC | donor_gain | 1.0000 |
| 1:217514820:ACT:A | donor_gain | 1.0000 |
| 1:217514821:C:CG | donor_gain | 1.0000 |
| 1:217514821:CT:C | donor_gain | 1.0000 |
| 1:217514821:CTC:C | donor_gain | 1.0000 |
| 1:217514821:CTCA:C | donor_gain | 1.0000 |
| 1:217514821:CTCAT:C | donor_gain | 1.0000 |
| 1:217514887:TACC:T | acceptor_loss | 1.0000 |
| 1:217514890:C:A | acceptor_loss | 1.0000 |
| 1:217514891:T:A | acceptor_loss | 1.0000 |
| 1:217514902:T:C | acceptor_gain | 1.0000 |
| 1:217514902:T:TC | acceptor_gain | 1.0000 |
| 1:217610400:CCT:C | acceptor_loss | 1.0000 |
| 1:217610402:T:G | acceptor_loss | 1.0000 |
AlphaMissense
3506 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:217620461:A:G | L32P | 1.000 |
| 1:217431294:A:G | W480R | 0.999 |
| 1:217431294:A:T | W480R | 0.999 |
| 1:217611055:A:C | S284R | 0.999 |
| 1:217611055:A:T | S284R | 0.999 |
| 1:217611057:T:G | S284R | 0.999 |
| 1:217620061:T:A | K165N | 0.999 |
| 1:217620061:T:G | K165N | 0.999 |
| 1:217620070:T:A | R162S | 0.999 |
| 1:217620070:T:G | R162S | 0.999 |
| 1:217620076:C:A | R160S | 0.999 |
| 1:217620076:C:G | R160S | 0.999 |
| 1:217620449:A:G | L36S | 0.999 |
| 1:217620473:A:G | L28P | 0.999 |
| 1:217431308:A:G | L475P | 0.998 |
| 1:217449283:T:A | R444S | 0.998 |
| 1:217449283:T:G | R444S | 0.998 |
| 1:217449284:C:G | R444T | 0.998 |
| 1:217620063:T:C | K165E | 0.998 |
| 1:217620071:C:G | R162T | 0.998 |
| 1:217620073:C:A | R161S | 0.998 |
| 1:217620073:C:G | R161S | 0.998 |
| 1:217620077:C:A | R160M | 0.998 |
| 1:217620077:C:G | R160T | 0.998 |
| 1:217620453:C:G | A35P | 0.998 |
| 1:217620461:A:T | L32H | 0.998 |
| 1:217620464:T:A | D31V | 0.998 |
| 1:217431292:C:A | W480C | 0.997 |
| 1:217431292:C:G | W480C | 0.997 |
| 1:217611069:C:G | D280H | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000019850 (1:217519948 G>A), RS1000021386 (1:217610700 A>C,G), RS1000021668 (1:217428411 A>T), RS1000038538 (1:217608483 G>A), RS1000067868 (1:217568041 C>T), RS1000068246 (1:217598104 C>T), RS1000087360 (1:217441571 G>A,C), RS1000116791 (1:217560912 T>G), RS1000126270 (1:217526004 T>C), RS1000127252 (1:217470588 C>T), RS1000144602 (1:217441764 G>A,C), RS1000148057 (1:217601732 T>C), RS1000185518 (1:217572401 C>G), RS1000258971 (1:217505384 A>G), RS1000259635 (1:217551034 T>G)
Disease associations
OMIM: gene MIM:616836 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): long QT syndrome (MONDO:0002442)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001066_7 | Dialysis-related mortality | 4.000000e-06 |
| GCST001523_29 | Visceral adipose tissue adjusted for BMI | 6.000000e-06 |
| GCST003818_8 | Resting heart rate | 1.000000e-11 |
| GCST003992_28 | Photic sneeze reflex | 1.000000e-72 |
| GCST004280_50 | Diastolic blood pressure | 2.000000e-10 |
| GCST004524_9 | Energy expenditure (24h) | 8.000000e-06 |
| GCST006086_12 | Familial lung cancer | 4.000000e-06 |
| GCST007094_56 | Diastolic blood pressure | 2.000000e-08 |
| GCST010396_176 | Gut microbiota (bacterial taxa, hurdle binary method) | 3.000000e-06 |
| GCST011741_67 | LDL cholesterol levels in HIV infection | 4.000000e-06 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0007887 | autosomal dominant compelling helio-ophthalmic outburst syndrome |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006953 | family history of lung cancer |
| EFO:0007874 | gut microbiome measurement |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases expression | 4 |
| trichostatin A | decreases expression, increases expression, affects cotreatment | 3 |
| entinostat | decreases expression, increases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, affects expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| resorcinol | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects expression, affects cotreatment, decreases expression | 1 |
| abrine | increases expression | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, affects expression | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| Resveratrol | increases expression, affects cotreatment | 1 |
| Temozolomide | increases expression | 1 |
| Vorinostat | increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Demecolcine | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_SQ32 | HAP1 GPATCH2 (-) 1 | Cancer cell line | Male |
| CVCL_SQ33 | HAP1 GPATCH2 (-) 2 | Cancer cell line | Male |
| CVCL_SQ34 | HAP1 GPATCH2 (-) 3 | Cancer cell line | Male |
| CVCL_SQ35 | HAP1 GPATCH2 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
66 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
| NCT01849003 | PHASE1 | COMPLETED | Study of the Effect of GS-6615 in Subjects With LQT-3 |
| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
| NCT00399412 | Not specified | COMPLETED | ECG Signal Collection From Long QT Syndrome, Wide QRS Complexes, Heart Failure, and Cardiac Resynchronization Patients |
| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
| NCT00588965 | Not specified | COMPLETED | Effect of Beta-blocker Therapy on QTc Response in Exercise and Recovery in Normal Subjects |
| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
| NCT01903564 | Not specified | COMPLETED | Fetal and Neonatal Magnetophysiology |
| NCT02082431 | Not specified | COMPLETED | Determine the Incidence of Long QT Amongst a Large Cohort of Subjects Diagnosed With Unilateral or Bilateral Sensorineural Hearing Loss. |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02425189 | Not specified | COMPLETED | The Canadian National Long QT Syndrome Registry |
| NCT02439645 | Not specified | TERMINATED | A Registry to Determine the Clinical and Genetic Risk Factors for Torsade De Pointes |
| NCT02439658 | Not specified | UNKNOWN | Genetics of QT Prolongation With Antiarrhythmics |
| NCT02549664 | Not specified | COMPLETED | Exercise in Genetic Cardiovascular Conditions |
| NCT02581241 | Not specified | COMPLETED | Abnormal QT-Response to the Sudden Tachycardia Provoked by Standing in Individuals With Drug-induced Long QT Syndrome |
| NCT02680080 | Not specified | COMPLETED | Effect of Grapefruit on QT Interval in Healthy Volunteers and Patients With Congenital Long QT Syndrome |
| NCT02775513 | Not specified | UNKNOWN | Metabolism of Patients With Genetically Caused Cardiac Arrhythmia |
| NCT02814981 | Not specified | UNKNOWN | Hydroxyzine and Risk of Prolongation of QT Interval |
| NCT02876380 | Not specified | COMPLETED | Prospective Identification of Long QT Syndrome in Fetal Life |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03544918 | Not specified | COMPLETED | Prevalence of Congenital Long QT Syndrome and Acquired QT Prolongation in a Hospital Cohort |
| NCT03642405 | Not specified | UNKNOWN | Drug-induced Repolarization ECG Changes |
| NCT03678311 | Not specified | COMPLETED | Long QT Syndrome and Sleep Apnea |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.