GPBP1
gene geneOn this page
Also known as DKFZp761C169
Summary
GPBP1 (GC-rich promoter binding protein 1, HGNC:29520) is a protein-coding gene on chromosome 5q11.2, encoding Vasculin (Q86WP2). Functions as a GC-rich promoter-specific transactivating transcription factor.
This gene was originally isolated by subtractive hybridization of cDNAs expressed in atherosclerotic plaques with a thrombus, and was found to be expressed only in vascular smooth muscle cells. However, a shorter splice variant was found to be more ubiquitously expressed. This protein is suggested to play a role in the development of atherosclerosis. Studies in mice suggest that it may also function as a GC-rich promoter-specific trans-activating transcription factor. Several alternatively spliced transcript variants encoding different isoforms have been described for this gene.
Source: NCBI Gene 65056 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 71 total
- MANE Select transcript:
NM_022913
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29520 |
| Approved symbol | GPBP1 |
| Name | GC-rich promoter binding protein 1 |
| Location | 5q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp761C169 |
| Ensembl gene | ENSG00000062194 |
| Ensembl biotype | protein_coding |
| OMIM | 608412 |
| Entrez | 65056 |
Gene structure
Transcript identifiers
Ensembl transcripts: 53 — 49 protein_coding, 4 retained_intron
ENST00000264779, ENST00000309096, ENST00000424459, ENST00000506184, ENST00000511209, ENST00000513524, ENST00000513732, ENST00000514387, ENST00000515484, ENST00000899283, ENST00000899284, ENST00000899285, ENST00000899286, ENST00000899287, ENST00000899288, ENST00000899289, ENST00000899290, ENST00000899291, ENST00000899292, ENST00000899293, ENST00000899294, ENST00000899295, ENST00000899296, ENST00000899297, ENST00000899298, ENST00000899299, ENST00000899300, ENST00000899301, ENST00000899302, ENST00000899303, ENST00000899304, ENST00000899305, ENST00000899306, ENST00000935644, ENST00000935645, ENST00000935646, ENST00000935647, ENST00000935648, ENST00000935649, ENST00000935650, ENST00000935651, ENST00000935652, ENST00000935653, ENST00000952538, ENST00000952539, ENST00000952540, ENST00000952541, ENST00000952542, ENST00000952543, ENST00000952544, ENST00000952545, ENST00000952546, ENST00000952547
RefSeq mRNA: 5 — MANE Select: NM_022913
NM_001127235, NM_001127236, NM_001203246, NM_001331037, NM_022913
CCDS: CCDS34162, CCDS47211, CCDS47212, CCDS56368, CCDS82998
Canonical transcript exons
ENST00000506184 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001224247 | 57214074 | 57214193 |
| ENSE00001353106 | 57175448 | 57176400 |
| ENSE00001505396 | 57261180 | 57261282 |
| ENSE00002087793 | 57262594 | 57264673 |
| ENSE00002106815 | 57174059 | 57174211 |
| ENSE00003474223 | 57235966 | 57236032 |
| ENSE00003492392 | 57246300 | 57246484 |
| ENSE00003500337 | 57249409 | 57249576 |
| ENSE00003525687 | 57250954 | 57251141 |
| ENSE00003528720 | 57247075 | 57247215 |
| ENSE00003569342 | 57230846 | 57230969 |
| ENSE00003649050 | 57231098 | 57231321 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 98.29.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 40.6016 / max 972.7196, expressed in 1804 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 56524 | 25.9514 | 1795 |
| 56521 | 10.7913 | 1611 |
| 56523 | 1.0775 | 656 |
| 56530 | 0.8606 | 229 |
| 56525 | 0.4919 | 247 |
| 56527 | 0.3675 | 155 |
| 56529 | 0.3235 | 137 |
| 56526 | 0.2910 | 119 |
| 56528 | 0.2235 | 71 |
| 56522 | 0.2232 | 104 |
Top tissues by expression
264 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 98.29 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 98.08 | gold quality |
| calcaneal tendon | UBERON:0003701 | 98.06 | gold quality |
| corpus callosum | UBERON:0002336 | 98.05 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 98.04 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 98.00 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.93 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 97.84 | gold quality |
| nasopharynx | UBERON:0001728 | 97.82 | gold quality |
| embryo | UBERON:0000922 | 97.78 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.78 | gold quality |
| kidney epithelium | UBERON:0004819 | 97.61 | gold quality |
| ileal mucosa | UBERON:0000331 | 97.54 | gold quality |
| myocardium | UBERON:0002349 | 97.54 | gold quality |
| sperm | CL:0000019 | 97.37 | gold quality |
| endothelial cell | CL:0000115 | 97.34 | gold quality |
| upper arm skin | UBERON:0004263 | 97.29 | gold quality |
| tendon | UBERON:0000043 | 97.27 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 97.27 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.27 | gold quality |
| tibialis anterior | UBERON:0001385 | 97.22 | gold quality |
| buccal mucosa cell | CL:0002336 | 97.20 | gold quality |
| amniotic fluid | UBERON:0000173 | 97.20 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.19 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 97.18 | gold quality |
| bronchial epithelial cell | CL:0002328 | 97.13 | gold quality |
| bronchus | UBERON:0002185 | 97.13 | gold quality |
| right testis | UBERON:0004534 | 97.10 | gold quality |
| deltoid | UBERON:0001476 | 97.05 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.05 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6075 | yes | 1028.83 |
| E-GEOD-135922 | yes | 22.81 |
| E-CURD-135 | no | 1057.55 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
141 targeting GPBP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
Literature-anchored findings (GeneRIF, showing 3)
- This publication discusses both human and mouse GC-rich promoter binding protein. (PMID:11256614)
- Vasculin is a novel vascular protein differentially expressed in human atherogenesis (PMID:12842993)
- occurrence of an unusual TG 3’ splice site in intron 9 (PMID:17672918)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Gpbp1 | ENSMUSG00000032745 |
| rattus_norvegicus | Gpbp1 | ENSRNOG00000013002 |
Paralogs (1): GPBP1L1 (ENSG00000159592)
Protein
Protein identifiers
Vasculin — Q86WP2 (reviewed: Q86WP2)
Alternative names: GC-rich promoter-binding protein 1, Vascular wall-linked protein
All UniProt accessions (2): Q86WP2, D4PHA4
UniProt curated annotations — full annotation on UniProt →
Function. Functions as a GC-rich promoter-specific transactivating transcription factor.
Subunit / interactions. Interacts with GTF2B, GTF2F2, RNA polymerase II and TBP.
Subcellular location. Nucleus. Cytoplasm.
Tissue specificity. Widely expressed. Some isoforms may be specifically expressed in veins and arteries (at protein level). Isoform 4 is widely expressed. Isoform 1, isoform 2 and isoform 3 may be specifically expressed in vascular smooth muscle cells.
Similarity. Belongs to the vasculin family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86WP2-1 | 1 | yes |
| Q86WP2-2 | 2 | |
| Q86WP2-3 | 3 | |
| Q86WP2-4 | 4 |
RefSeq proteins (5): NP_001120707, NP_001120708, NP_001190175, NP_001317966, NP_075064* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR028128 | Vasculin_fam | Family |
Pfam: PF15337
UniProt features (21 total): modified residue 6, compositionally biased region 5, region of interest 4, splice variant 3, chain 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86WP2-F1 | 54.54 | 0.04 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 49, 87, 274, 276, 322, 381
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 215 (showing top):
ATF_B, CREL_01, TAATAAT_MIR126, GCM_GSPT1, CREBP1_Q2, AP2_Q3, CAGCTG_AP4_Q5, SRF_Q5_01, CREB_Q4, NFKB_C, E2F1DP1_01, E2F1DP2_01, FREAC3_01, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, TGCTGAY_UNKNOWN
GO Biological Process (4): DNA-templated transcription (GO:0006351), regulation of DNA-templated transcription (GO:0006355), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of DNA-templated transcription (GO:0045893)
GO Molecular Function (4): DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), RNA binding (GO:0003723), protein binding (GO:0005515)
GO Cellular Component (4): nucleus (GO:0005634), cytosol (GO:0005829), plasma membrane (GO:0005886), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| DNA-templated transcription | 2 |
| regulation of DNA-templated transcription | 2 |
| nucleic acid binding | 2 |
| cellular anatomical structure | 2 |
| gene expression | 1 |
| RNA biosynthetic process | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
822 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPBP1 | TOP2A | P11388 | 670 |
| GPBP1 | GTF2B | Q00403 | 584 |
| GPBP1 | PSMC1 | P49014 | 469 |
| GPBP1 | SSH3 | Q8TE77 | 447 |
| GPBP1 | EP300 | Q09472 | 411 |
| GPBP1 | EAPP | Q56P03 | 401 |
| GPBP1 | CCDC174 | Q6PII3 | 371 |
| GPBP1 | SH3D19 | Q5HYK7 | 370 |
| GPBP1 | DRG2 | P55039 | 365 |
| GPBP1 | SLC9A1 | P19634 | 362 |
| GPBP1 | ZCCHC4 | Q9H5U6 | 356 |
| GPBP1 | ARFGEF3 | Q5TH69 | 353 |
| GPBP1 | FAM120B | Q96EK7 | 352 |
| GPBP1 | CERT1 | Q9Y5P4 | 348 |
| GPBP1 | ZNF730 | Q6ZMV8 | 348 |
IntAct
75 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FNDC11 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.830 |
| GPBP1 | FNDC11 | psi-mi:“MI:0915”(physical association) | 0.830 |
| GPBP1 | MCRS1 | psi-mi:“MI:0915”(physical association) | 0.700 |
| YWHAG | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.640 |
| YWHAH | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.570 |
| GPBP1 | PLEKHF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLEKHF2 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HSF2BP | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CCDC57 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GPBP1 | NXF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FAM161A | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GPBP1 | PRPF18 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RACK1 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| QARS1 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MORF4L2 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PSMB1 | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLX1A | BACH1 | psi-mi:“MI:0914”(association) | 0.530 |
| TPD52 | TPD52L2 | psi-mi:“MI:0914”(association) | 0.530 |
| ankX | GPBP1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| GPBP1 | ACTN3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPBP1 | PCNA | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (100): C20orf195 (Two-hybrid), PLEKHF2 (Two-hybrid), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Affinity Capture-MS), GPBP1 (Two-hybrid), GPBP1 (Affinity Capture-MS), PKP3 (Affinity Capture-MS), PLCD1 (Affinity Capture-MS)
ESM2 similar proteins: A4FVR1, A8MQL1, F4IUY8, G5CEW6, O43024, O48772, O64768, O80386, P42775, Q0JDM0, Q0P5K1, Q0WPF2, Q14444, Q14671, Q1LZB6, Q2VB19, Q38796, Q56XU4, Q5M9G3, Q5R4E9, Q5R5X3, Q60865, Q642J5, Q66KI6, Q6K977, Q6NXH3, Q76E23, Q7XM16, Q80U78, Q86WP2, Q8IH18, Q8LPQ9, Q8RXE7, Q8RY18, Q8VY15, Q8VZS6, Q93ZJ9, Q94C33, Q94KE2, Q9C658
Diamond homologs: Q0P5K1, Q28FE5, Q3KR53, Q5R4E9, Q5R9C3, Q6DD19, Q6NXH3, Q6NZP2, Q86WP2, Q9HC44
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 47 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 5 | 126.9× | 4e-08 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 5 | 112.0× | 4e-08 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 5 | 112.0× | 4e-08 |
| Activation of BH3-only proteins | 5 | 82.8× | 2e-07 |
| RHO GTPases activate PKNs | 5 | 52.9× | 1e-06 |
| Intrinsic Pathway for Apoptosis | 5 | 48.8× | 2e-06 |
| SARS-CoV-1-host interactions | 6 | 35.1× | 8e-07 |
| SARS-CoV-1 Infection | 6 | 28.6× | 2e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| intracellular protein localization | 5 | 13.8× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
71 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 54 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2950 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:57176095:T:TA | acceptor_gain | 1.0000 |
| 5:57230834:A:AG | acceptor_gain | 1.0000 |
| 5:57230834:AATTT:A | acceptor_gain | 1.0000 |
| 5:57230835:A:G | acceptor_gain | 1.0000 |
| 5:57230838:T:TA | acceptor_gain | 1.0000 |
| 5:57230842:TCAGT:T | acceptor_loss | 1.0000 |
| 5:57230843:CA:C | acceptor_loss | 1.0000 |
| 5:57230844:A:AG | acceptor_gain | 1.0000 |
| 5:57230844:A:C | acceptor_loss | 1.0000 |
| 5:57230844:AGTC:A | acceptor_gain | 1.0000 |
| 5:57230845:G:A | acceptor_loss | 1.0000 |
| 5:57230845:G:GT | acceptor_gain | 1.0000 |
| 5:57230845:GT:G | acceptor_gain | 1.0000 |
| 5:57230845:GTC:G | acceptor_gain | 1.0000 |
| 5:57230845:GTCG:G | acceptor_gain | 1.0000 |
| 5:57230845:GTCGT:G | acceptor_gain | 1.0000 |
| 5:57230966:GGAG:G | donor_gain | 1.0000 |
| 5:57230967:G:GT | donor_gain | 1.0000 |
| 5:57230967:GAGGT:G | donor_loss | 1.0000 |
| 5:57230968:AGG:A | donor_loss | 1.0000 |
| 5:57230969:GG:G | donor_loss | 1.0000 |
| 5:57230970:GTAA:G | donor_loss | 1.0000 |
| 5:57230971:T:A | donor_loss | 1.0000 |
| 5:57230980:C:G | donor_gain | 1.0000 |
| 5:57231090:A:AG | acceptor_gain | 1.0000 |
| 5:57231091:A:G | acceptor_gain | 1.0000 |
| 5:57231093:TAAA:T | acceptor_loss | 1.0000 |
| 5:57231096:A:AC | acceptor_loss | 1.0000 |
| 5:57231097:G:GT | acceptor_loss | 1.0000 |
| 5:57231311:C:G | donor_gain | 1.0000 |
AlphaMissense
3154 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:57214158:T:A | W10R | 1.000 |
| 5:57214158:T:C | W10R | 1.000 |
| 5:57214146:T:C | F6L | 0.999 |
| 5:57214148:T:A | F6L | 0.999 |
| 5:57214148:T:G | F6L | 0.999 |
| 5:57214160:G:C | W10C | 0.999 |
| 5:57214160:G:T | W10C | 0.999 |
| 5:57249505:T:C | F301L | 0.999 |
| 5:57249506:T:C | F301S | 0.999 |
| 5:57249507:T:A | F301L | 0.999 |
| 5:57249507:T:G | F301L | 0.999 |
| 5:57249509:T:C | L302S | 0.999 |
| 5:57261185:T:C | L389S | 0.999 |
| 5:57261239:T:C | L407S | 0.999 |
| 5:57261262:T:C | F415L | 0.999 |
| 5:57261263:T:C | F415S | 0.999 |
| 5:57261264:C:A | F415L | 0.999 |
| 5:57261264:C:G | F415L | 0.999 |
| 5:57214162:T:C | L11P | 0.998 |
| 5:57251131:G:C | A384P | 0.998 |
| 5:57261180:A:C | R387S | 0.998 |
| 5:57261180:A:T | R387S | 0.998 |
| 5:57261182:T:C | L388S | 0.998 |
| 5:57261199:T:A | W394R | 0.998 |
| 5:57261199:T:C | W394R | 0.998 |
| 5:57261201:G:C | W394C | 0.998 |
| 5:57261201:G:T | W394C | 0.998 |
| 5:57214159:G:C | W10S | 0.997 |
| 5:57214162:T:A | L11H | 0.997 |
| 5:57261200:G:C | W394S | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000060323 (5:57182225 A>G), RS1000061150 (5:57228011 T>C,G), RS1000065527 (5:57198215 C>T), RS1000092109 (5:57192790 A>C,G), RS1000126922 (5:57192530 G>A), RS1000141791 (5:57214613 A>G), RS1000146094 (5:57254218 C>T), RS1000174319 (5:57177873 AT>A,ATT,ATTTTTT), RS1000176804 (5:57253843 A>G), RS1000208410 (5:57220645 A>T), RS1000213535 (5:57259711 G>A), RS1000252915 (5:57250805 A>G), RS1000303037 (5:57220304 G>A,T), RS1000303201 (5:57182578 G>T), RS1000338193 (5:57203665 A>G)
Disease associations
OMIM: gene MIM:608412 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002934_22 | Zinc levels | 9.000000e-06 |
| GCST007094_185 | Diastolic blood pressure | 3.000000e-08 |
| GCST007449_1 | Normal facial asymmetry (angle of deformation score) | 8.000000e-08 |
| GCST011155_17 | Nontraumatic osteonecrosis of the femoral head | 5.000000e-06 |
| GCST012341_3 | Asparaginase hypersensitivity in acute lymphoblastic leukemia | 3.000000e-08 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006336 | diastolic blood pressure |
| EFO:0009751 | facial asymmetry measurement |
| EFO:1001930 | idiopathic osteonecrosis of the femoral head |
| EFO:0004881 | asparaginase hypersensitivity |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | affects cotreatment, decreases expression, increases abundance, increases oxidation | 3 |
| sodium arsenite | increases expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| K 7174 | increases expression | 1 |
| abrine | increases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| jinfukang | decreases expression | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Acrolein | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Coal | decreases expression, increases abundance | 1 |
| Doxorubicin | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Methotrexate | increases expression | 1 |
| Ozone | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| Silver | increases expression | 1 |
| Smoke | decreases expression, increases abundance | 1 |
| Testosterone | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.