GPC5-IT1

Summary

GPC5-IT1 (GPC5 intronic transcript 1, HGNC:41340) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41340
Approved symbol	GPC5-IT1
Name	GPC5 intronic transcript 1
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236240
Ensembl biotype	lncRNA
Entrez	100874293
RNAcentral	URS00026A2603 — lncRNA, 887 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000416664

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416664 — 2 exons

Exon	Start	End
ENSE00001691251	92509513	92510094
ENSE00001795463	92484606	92484681

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 58.67.

Top tissues by expression

66 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
blood	UBERON:0000178	58.67	gold quality
calcaneal tendon	UBERON:0003701	58.06	gold quality
corpus callosum	UBERON:0002336	57.85	gold quality
left testis	UBERON:0004533	55.59	gold quality
testis	UBERON:0000473	55.34	gold quality
right testis	UBERON:0004534	55.11	gold quality
right lobe of liver	UBERON:0001114	54.18	gold quality
prefrontal cortex	UBERON:0000451	53.28	gold quality
adrenal tissue	UBERON:0018303	52.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.89	gold quality
islet of Langerhans	UBERON:0000006	52.37	gold quality
monocyte	CL:0000576	51.06	silver quality
placenta	UBERON:0001987	50.10	gold quality
superior frontal gyrus	UBERON:0002661	48.88	silver quality
kidney	UBERON:0002113	48.49	gold quality
multicellular organism	UBERON:0000468	47.81	gold quality
esophagus mucosa	UBERON:0002469	47.65	gold quality
nucleus accumbens	UBERON:0001882	47.03	gold quality
lung	UBERON:0002048	46.97	gold quality
adult mammalian kidney	UBERON:0000082	46.35	gold quality
amygdala	UBERON:0001876	46.26	gold quality
cerebellar cortex	UBERON:0002129	45.93	gold quality
adipose tissue	UBERON:0001013	45.74	gold quality
right hemisphere of cerebellum	UBERON:0014890	45.73	gold quality
putamen	UBERON:0001874	45.72	gold quality
heart left ventricle	UBERON:0002084	45.61	gold quality
caudate nucleus	UBERON:0001873	45.59	gold quality
tibial artery	UBERON:0007610	45.54	gold quality
brain	UBERON:0000955	45.17	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.