GPC6-AS1

Summary

GPC6-AS1 (GPC6 antisense RNA 1, HGNC:39909) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39909
Approved symbol	GPC6-AS1
Name	GPC6 antisense RNA 1
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236520
Ensembl biotype	lncRNA
Entrez	100873972
RNAcentral	URS000043DDA7 — lncRNA, 698 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000436329

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436329 — 4 exons

Exon	Start	End
ENSE00001602620	94186906	94187118
ENSE00001637182	94154193	94154406
ENSE00001639845	94187871	94187991
ENSE00001785327	94187224	94187373

Expression profiles

Bgee: expression breadth broad, 83 present calls, max score 87.83.

Top tissues by expression

83 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.83	gold quality
adrenal tissue	UBERON:0018303	70.62	gold quality
sural nerve	UBERON:0015488	61.03	gold quality
prefrontal cortex	UBERON:0000451	60.58	gold quality
calcaneal tendon	UBERON:0003701	60.27	gold quality
liver	UBERON:0002107	59.71	gold quality
kidney	UBERON:0002113	57.37	gold quality
urinary bladder	UBERON:0001255	56.22	silver quality
lung	UBERON:0002048	55.66	gold quality
monocyte	CL:0000576	55.47	gold quality
lymph node	UBERON:0000029	55.46	gold quality
cortex of kidney	UBERON:0001225	53.91	silver quality
endometrium	UBERON:0001295	53.80	silver quality
duodenum	UBERON:0002114	52.81	gold quality
stomach	UBERON:0000945	52.45	gold quality
body of pancreas	UBERON:0001150	51.43	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.39	gold quality
primary visual cortex	UBERON:0002436	51.24	gold quality
adult mammalian kidney	UBERON:0000082	51.08	gold quality
muscle of leg	UBERON:0001383	50.61	gold quality
blood	UBERON:0000178	50.59	gold quality
corpus callosum	UBERON:0002336	50.07	gold quality
intestine	UBERON:0000160	49.93	gold quality
right lobe of liver	UBERON:0001114	49.67	gold quality
heart	UBERON:0000948	49.60	gold quality
left coronary artery	UBERON:0001626	49.54	gold quality
islet of Langerhans	UBERON:0000006	49.18	gold quality
gall bladder	UBERON:0002110	48.44	gold quality
gastrocnemius	UBERON:0001388	45.80	gold quality
multicellular organism	UBERON:0000468	45.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.