GPC6-AS2

Summary

GPC6-AS2 (GPC6 antisense RNA 2, HGNC:39910) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39910
Approved symbol	GPC6-AS2
Name	GPC6 antisense RNA 2
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224394
Ensembl biotype	lncRNA
Entrez	100873973
RNAcentral	URS000075A270 — lncRNA, 651 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000445540

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445540 — 3 exons

Exon	Start	End
ENSE00001643221	93830816	93830955
ENSE00001700983	93818424	93818782
ENSE00001755740	93836057	93836144

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 89.70.

Top tissues by expression

81 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.70	gold quality
adrenal tissue	UBERON:0018303	64.91	gold quality
adrenal gland	UBERON:0002369	61.45	gold quality
liver	UBERON:0002107	60.27	gold quality
skeletal muscle tissue	UBERON:0001134	59.97	silver quality
monocyte	CL:0000576	57.29	gold quality
blood	UBERON:0000178	56.52	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.07	gold quality
cortex of kidney	UBERON:0001225	54.59	gold quality
stomach	UBERON:0000945	54.11	gold quality
calcaneal tendon	UBERON:0003701	53.03	silver quality
endometrium	UBERON:0001295	52.96	silver quality
vermiform appendix	UBERON:0001154	52.87	gold quality
bone marrow	UBERON:0002371	52.55	silver quality
cerebellum	UBERON:0002037	52.53	silver quality
kidney	UBERON:0002113	51.60	gold quality
islet of Langerhans	UBERON:0000006	50.22	gold quality
prefrontal cortex	UBERON:0000451	50.14	gold quality
urinary bladder	UBERON:0001255	49.82	silver quality
intestine	UBERON:0000160	49.73	gold quality
lung	UBERON:0002048	48.93	gold quality
right lobe of liver	UBERON:0001114	47.96	gold quality
Ammon’s horn	UBERON:0001954	47.30	gold quality
gastrocnemius	UBERON:0001388	46.54	silver quality
left adrenal gland cortex	UBERON:0035825	45.71	silver quality
hypothalamus	UBERON:0001898	45.58	gold quality
popliteal artery	UBERON:0002250	45.45	silver quality
tibial artery	UBERON:0007610	45.28	silver quality
colon	UBERON:0001155	45.05	gold quality
heart	UBERON:0000948	45.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.