GPD2
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Summary
GPD2 (glycerol-3-phosphate dehydrogenase 2, HGNC:4456) is a protein-coding gene on chromosome 2q24.1, encoding Glycerol-3-phosphate dehydrogenase, mitochondrial (P43304). Calcium-responsive mitochondrial glycerol-3-phosphate dehydrogenase which seems to be a key component of the pancreatic beta-cell glucose-sensing device.
The protein encoded by this gene localizes to the inner mitochondrial membrane and catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate, using FAD as a cofactor. Along with GDP1, the encoded protein constitutes the glycerol phosphate shuttle, which reoxidizes NADH formed during glycolysis. Two transcript variants encoding the same protein have been found for this gene.
Source: NCBI Gene 2820 — RefSeq curated summary.
At a glance
- Gene–disease (curated): diabetes mellitus, noninsulin-dependent (No Known Disease Relationship, GenCC)
- GWAS associations: 18
- Clinical variants (ClinVar): 131 total — 1 pathogenic, 1 likely-pathogenic
- Regional missense constraint (gnomAD): 1 of 3 regions constrained (≈4% of expected missense variation)
- GTEx eGene: eQTL in 24 tissues, sQTL in 5 (q < 0.05)
- Phenotypes (HPO): 5
- Drug target: yes — 1 curated mechanism-of-action drug
- Approved drugs (ChEMBL mechanism of action): 1 — Metformin Hydrochloride
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.80 (unconstrained)
- MANE Select transcript:
NM_000408 - Interaction hub: 1,814 STRING partners (top 9% of genes corpus-wide)
- Notable: 131 clinical variants but no curated precision-oncology (CIViC) evidence yet
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4456 |
| Approved symbol | GPD2 |
| Name | glycerol-3-phosphate dehydrogenase 2 |
| Location | 2q24.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000115159 |
| Ensembl biotype | protein_coding |
| OMIM | 138430 |
| Entrez | 2820 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 18 protein_coding, 6 nonsense_mediated_decay, 3 protein_coding_CDS_not_defined, 1 retained_intron
MANE Select: ENST00000438166
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 2, TSL 3: 2, TSL 4: 3, TSL 5: 2
ENST00000438166, ENST00000310454, ENST00000409674, ENST00000409861, ENST00000415049, ENST00000416888, ENST00000430992, ENST00000464846, ENST00000492005, ENST00000495851, ENST00000496190, ENST00000540309, ENST00000893602, ENST00000893603, ENST00000893604, ENST00000893605, ENST00000893606, ENST00000893607, ENST00000893608, ENST00000893609, ENST00000893610, ENST00000893611, ENST00001003519, ENST00001063663, ENST00001110239, ENST00001114516, ENST00001118603, ENST00001138880
RefSeq mRNA: 2 — MANE Select: NM_000408
NM_000408, NM_001083112
CCDS: CCDS2202
Canonical transcript exons
ENST00000438166 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000778506 | 156510796 | 156510920 |
| ENSE00001188495 | 156582793 | 156586403 |
| ENSE00001581432 | 156436379 | 156436513 |
| ENSE00001596519 | 156513333 | 156513496 |
| ENSE00001655975 | 156550602 | 156550746 |
| ENSE00001667537 | 156512220 | 156512317 |
| ENSE00001669783 | 156568825 | 156568959 |
| ENSE00001685130 | 156570087 | 156570218 |
| ENSE00001689131 | 156557389 | 156557582 |
| ENSE00001748838 | 156569363 | 156569538 |
| ENSE00001768130 | 156578889 | 156579001 |
| ENSE00001784164 | 156571134 | 156571292 |
| ENSE00003488102 | 156579086 | 156579164 |
| ENSE00003546640 | 156496044 | 156496215 |
| ENSE00003554397 | 156579690 | 156579788 |
| ENSE00003688248 | 156476098 | 156476207 |
| ENSE00003745755 | 156549608 | 156549772 |
Expression profiles
Bgee: expression breadth ubiquitous, 271 present calls, max score 97.66.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.7097 / max 312.3710, expressed in 1758 samples.
Highest expression (Bgee): secondary oocyte, sperm, oocyte, esophagus squamous epithelium, buccal mucosa cell.
Genetic regulation across tissues (GTEx eQTL / sQTL)
GPD2 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 24 tissues and its splicing (sQTL) in 5 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 29 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Testis | sqtl | 7.6e-35 | -1.10 | 2:156612298:C:T |
| Cells Cultured fibroblasts | eqtl | 7.8e-35 | +0.31 | 2:156437479:A:G |
| Nerve Tibial | eqtl | 5.7e-24 | +0.32 | 2:156431846:T:C |
| Adipose Subcutaneous | eqtl | 1.8e-18 | +0.28 | 2:156464828:C:G |
| Artery Tibial | eqtl | 1.7e-16 | +0.23 | 2:156437479:A:G |
| Whole Blood | eqtl | 1.6e-11 | +0.18 | 2:156451296:A:AC |
| Cells Cultured fibroblasts | sqtl | 1.3e-07 | +1.39 | 2:156434467:T:TA |
| Thyroid | eqtl | 8.1e-06 | +0.57 | 2:156497991:C:G |
| Colon Transverse | eqtl | 2.9e-05 | +0.10 | 2:156524067:G:A |
| Breast Mammary Tissue | eqtl | 3.4e-05 | +0.23 | 2:156612032:C:A |
| Artery Coronary | eqtl | 4.0e-05 | +0.24 | 2:156431846:T:C |
| Brain Cerebellar Hemisphere | eqtl | 3.2e-04 | -0.16 | 2:156573645:A:G |
| Cells EBV-transformed lymphocytes | sqtl | 1.3e-03 | +1.30 | 2:156434467:T:TA |
| Esophagus Gastroesophageal Junction | eqtl | 1.4e-03 | +0.17 | 2:156609646:G:C |
| Adipose Visceral Omentum | eqtl | 1.5e-03 | +0.18 | 2:156442679:G:A |
| Heart Atrial Appendage | eqtl | 1.5e-03 | +0.16 | 2:156484204:G:A |
| Small Intestine Terminal Ileum | eqtl | 2.2e-03 | +0.16 | 2:156462379:G:A |
| Stomach | sqtl | 3.0e-03 | +1.10 | 2:156723095:A:T |
| Colon Sigmoid | sqtl | 6.3e-03 | +1.01 | 2:156256142:C:G |
| Esophagus Muscularis | eqtl | 8.5e-03 | +0.23 | 2:156359692:C:T |
FANTOM5 promoters
10 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 23174 | 11.0671 | 1684 |
| 23173 | 2.6390 | 1084 |
| 23175 | 1.7138 | 988 |
| 23169 | 0.5606 | 268 |
| 23171 | 0.4588 | 249 |
| 23168 | 0.3789 | 206 |
| 23170 | 0.3123 | 149 |
| 23172 | 0.2801 | 156 |
| 23176 | 0.2764 | 135 |
| 23177 | 0.0227 | 3 |
Top tissues by expression
showing 100 of 297 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 97.66 | gold quality |
| sperm | CL:0000019 | 96.21 | gold quality |
| oocyte | CL:0000023 | 95.25 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 94.81 | gold quality |
| buccal mucosa cell | CL:0002336 | 93.90 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.51 | gold quality |
| jejunal mucosa | UBERON:0000399 | 93.42 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.10 | gold quality |
| male germ cell | CL:0000015 | 92.71 | gold quality |
| calcaneal tendon | UBERON:0003701 | 92.58 | gold quality |
| gingival epithelium | UBERON:0001949 | 92.44 | gold quality |
| cortical plate | UBERON:0005343 | 92.09 | gold quality |
| oral cavity | UBERON:0000167 | 91.80 | gold quality |
| gingiva | UBERON:0001828 | 91.63 | gold quality |
| ventricular zone | UBERON:0003053 | 91.40 | gold quality |
| ganglionic eminence | UBERON:0004023 | 91.12 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 90.94 | gold quality |
| rectum | UBERON:0001052 | 90.26 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 90.19 | gold quality |
| biceps brachii | UBERON:0001507 | 89.69 | gold quality |
| upper leg skin | UBERON:0004262 | 89.33 | gold quality |
| tendon | UBERON:0000043 | 89.25 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 89.01 | gold quality |
| jejunum | UBERON:0002115 | 88.91 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 88.69 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.66 | gold quality |
| esophagus mucosa | UBERON:0002469 | 88.61 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 88.23 | gold quality |
| tonsil | UBERON:0002372 | 88.13 | gold quality |
| monocyte | CL:0000576 | 87.91 | gold quality |
| entorhinal cortex | UBERON:0002728 | 87.90 | gold quality |
| squamous epithelium | UBERON:0006914 | 87.71 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.18 | gold quality |
| mononuclear cell | CL:0000842 | 87.11 | gold quality |
| skin of hip | UBERON:0001554 | 86.75 | gold quality |
| muscle of leg | UBERON:0001383 | 86.73 | gold quality |
| nucleus accumbens | UBERON:0001882 | 86.72 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 86.70 | gold quality |
| leukocyte | CL:0000738 | 86.65 | gold quality |
| endothelial cell | CL:0000115 | 86.60 | gold quality |
| gastrocnemius | UBERON:0001388 | 86.50 | gold quality |
| eye | UBERON:0000970 | 86.39 | gold quality |
| bronchial epithelial cell | CL:0002328 | 86.38 | gold quality |
| lower lobe of lung | UBERON:0008949 | 86.28 | gold quality |
| duodenum | UBERON:0002114 | 86.21 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 86.18 | gold quality |
| Ammon’s horn | UBERON:0001954 | 85.97 | gold quality |
| amniotic fluid | UBERON:0000173 | 85.90 | gold quality |
| postcentral gyrus | UBERON:0002581 | 85.85 | gold quality |
| mouth mucosa | UBERON:0003729 | 85.73 | gold quality |
| endometrium | UBERON:0001295 | 85.69 | gold quality |
| right uterine tube | UBERON:0001302 | 85.67 | gold quality |
| temporal lobe | UBERON:0001871 | 85.63 | gold quality |
| stromal cell of endometrium | CL:0002255 | 85.61 | gold quality |
| caudate nucleus | UBERON:0001873 | 85.58 | gold quality |
| minor salivary gland | UBERON:0001830 | 85.56 | gold quality |
| amygdala | UBERON:0001876 | 85.54 | gold quality |
| medial globus pallidus | UBERON:0002477 | 85.21 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 85.13 | gold quality |
| visceral pleura | UBERON:0002401 | 85.06 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 84.81 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 84.79 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 84.77 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 84.76 | gold quality |
| parietal pleura | UBERON:0002400 | 84.54 | gold quality |
| seminal vesicle | UBERON:0000998 | 84.46 | gold quality |
| parietal lobe | UBERON:0001872 | 84.42 | gold quality |
| putamen | UBERON:0001874 | 84.20 | gold quality |
| prefrontal cortex | UBERON:0000451 | 84.12 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.07 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 84.02 | gold quality |
| muscle organ | UBERON:0001630 | 84.00 | gold quality |
| pleura | UBERON:0000977 | 83.89 | gold quality |
| globus pallidus | UBERON:0001875 | 83.89 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 83.80 | gold quality |
| cerebellar cortex | UBERON:0002129 | 83.58 | gold quality |
| colonic epithelium | UBERON:0000397 | 83.57 | gold quality |
| telencephalon | UBERON:0001893 | 83.56 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 83.45 | gold quality |
| mammary gland | UBERON:0001911 | 83.43 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 83.40 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 83.40 | gold quality |
| gall bladder | UBERON:0002110 | 83.11 | gold quality |
| skin of abdomen | UBERON:0001416 | 83.03 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.97 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 82.97 | gold quality |
| bone marrow | UBERON:0002371 | 82.94 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 82.84 | gold quality |
| cingulate cortex | UBERON:0003027 | 82.82 | gold quality |
| cerebral cortex | UBERON:0000956 | 82.80 | gold quality |
| cerebellum | UBERON:0002037 | 82.73 | gold quality |
| tibial nerve | UBERON:0001323 | 82.72 | gold quality |
| skin of leg | UBERON:0001511 | 82.69 | gold quality |
| vagina | UBERON:0000996 | 82.66 | gold quality |
| mammary duct | UBERON:0001765 | 82.66 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 82.58 | gold quality |
| esophagus | UBERON:0001043 | 82.56 | gold quality |
| forebrain | UBERON:0001890 | 82.46 | gold quality |
| zone of skin | UBERON:0000014 | 82.43 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 82.35 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 260.58 |
| E-ANND-3 | yes | 7.01 |
HPA expression
RNA tissue specificity: Low tissue specificity
showing 60 of 80 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Spinal cord | tissue | 102.0 | |
| Hippocampal formation | tissue | 93.2 | |
| Midbrain | tissue | 81.3 | |
| Cerebral cortex | tissue | 80.2 | medium |
| Motor cortex | tissue | 80.2 | |
| Medulla oblongata | tissue | 79.8 | |
| Occipital cortex | tissue | 79.3 | |
| Somatosensory cortex | tissue | 76.8 | |
| Thalamus | tissue | 76.3 | |
| Prefrontal cortex | tissue | 74.8 | |
| Entorhinal cortex | tissue | 74.8 | |
| Pons | tissue | 74.1 | |
| Insular cortex | tissue | 71.7 | |
| Retrosplenial cortex | tissue | 71.2 | |
| Amygdala | tissue | 70.9 | |
| Periaqueductal gray | tissue | 70.9 | |
| Temporal cortex | tissue | 70.6 | |
| Retrosplenial and cingulate cortex | tissue | 70.3 | |
| Substantia nigra | tissue | 70.2 | |
| Putamen | tissue | 68.2 | |
| Cerebellum | tissue | 65.0 | high |
| Superior colliculi | tissue | 63.8 | |
| Corpus callosum | tissue | 62.0 | |
| Hypothalamus | tissue | 58.3 | |
| Frontal cortex | tissue | 53.2 | |
| Ventral forebrain | tissue | 50.9 | |
| Basal ganglia | tissue | 47.1 | medium |
| Septum | tissue | 45.0 | |
| Olfactory bulb | tissue | 42.4 | |
| Nucleus accumbens | tissue | 32.8 | |
| Hippocampus | tissue | 32.5 | high |
| Caudate putamen | tissue | 31.2 | |
| Postcentral gyrus | tissue | 29.8 | |
| Locus coeruleus | tissue | 26.8 | |
| Skeletal muscle | tissue | 23.1 | medium |
| Parathyroid gland | tissue | 19.3 | high |
| Colon | tissue | 17.4 | high |
| Fallopian tube | tissue | 17.2 | high |
| Rectum | tissue | 16.9 | high |
| Stomach 1 | tissue | 16.5 | high |
| Esophagus | tissue | 16.1 | high |
| Breast | tissue | 15.1 | high |
| Small intestine | tissue | 14.8 | high |
| Salivary gland | tissue | 14.1 | high |
| Duodenum | tissue | 13.6 | high |
| Choroid plexus | tissue | 13.5 | |
| Urinary bladder | tissue | 13.4 | high |
| Tongue | tissue | 13.3 | |
| Bone marrow | tissue | 12.6 | medium |
| Skin 1 | tissue | 11.8 | high |
| Thyroid gland | tissue | 11.5 | medium |
| Lung | tissue | 10.8 | high |
| Prostate | tissue | 10.3 | high |
| Cervix | tissue | 9.6 | high |
| Vagina | tissue | 9.1 | high |
| Retina | tissue | 8.8 | |
| Gallbladder | tissue | 8.4 | high |
| Tonsil | tissue | 8.1 | high |
| Spleen | tissue | 8.0 | medium |
| Adipose tissue | tissue | 7.7 | medium |
Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — Ventral spinal cord (102.0), Dorsal hippocampus (93.2), Subiculum (80.2), Ventral hippocampus (79.6), Dorsal spinal cord (74.1).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXO1
miRNA regulators (miRDB)
Targeting GPD2 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 220 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
Functional genomics
gnomAD constraint: pLI 0.000127, LOEUF 0.796, missense Z 1.99 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000438166 splits into 3 regions with different missense tolerance; 1 is missense-constrained (≈4% of the expected missense variation). Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 2:156,476,106–156,579,697 | 692 / 809.7 | 0.85 | no |
| 2:156,579,698–156,582,800 | 10 / 37.4 | 0.27 | yes (p 7.5e-06) |
| 2:156,582,801–156,582,915 | 46 / 49.1 | 0.94 | no |
Literature-anchored findings (GeneRIF, showing 11)
- testis-specific promoter of mitochondrial GPDH (PMID:15456763)
- Overall, these data demonstrate that mGPDH is involved in maintaining a high rate of glycolysis and is an important site of electron leakage leading to ROS production in prostate cancer cells. (PMID:15967408)
- the up-regulation of mGPDH, due to a highly glycolytic environment, contributes to the overall increase in ROS generation and may result in the progression of prostate cancer (PMID:17886033)
- We report 3 additional patients with a de novo deletion encompassing NR4A2: 2 patients have deletions encompassing only NR4A2 gene and 1 patient has a deletion including NR4A2 and the first exon of GPD2 (PMID:29770430)
- Here, the authors identify mGPDH as a critical regulator of skeletal muscle regeneration. Specifically, it regulates myogenic markers and myoblast differentiation by controlling mitochondrial biogenesis via CaMKKbeta/AMPK. (PMID:30389681)
- mRNA and protein levels reduced in livers of patients with nonalcoholic fatty liver disease (PMID:30653687)
- Deficiency of Mitochondrial Glycerol 3-Phosphate Dehydrogenase Exacerbates Podocyte Injury and the Progression of Diabetic Kidney Disease. (PMID:33741719)
- mGPDH Deficiency leads to melanoma metastasis via induced NRF2. (PMID:33939274)
- A ferroptosis defense mechanism mediated by glycerol-3-phosphate dehydrogenase 2 in mitochondria. (PMID:35749365)
- GPD2: The relationship with cancer and neural stemness. (PMID:36592694)
- Glycerol 3-phosphate dehydrogenases (1 and 2) in cancer and other diseases. (PMID:38689091)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gpd2 | ENSDARG00000062430 |
| mus_musculus | Gpd2 | ENSMUSG00000026827 |
| rattus_norvegicus | Gpd2 | ENSRNOG00000033824 |
| drosophila_melanogaster | Gpo1 | FBGN0022160 |
| drosophila_melanogaster | Gpo2 | FBGN0033190 |
| caenorhabditis_elegans | gpdh-3 | WBGENE00012031 |
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:99778) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 23 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| decreased body weight | 3 |
| decreased body size | 1 |
| abnormal eating behavior | 1 |
| decreased white adipose tissue amount | 1 |
| reduced fertility | 1 |
| decreased litter size | 1 |
| decreased circulating insulin level | 1 |
| decreased insulin secretion | 1 |
| increased circulating cholesterol level | 1 |
| decreased oxygen consumption | 1 |
| abnormal triiodothyronine level | 1 |
| increased circulating thyroxine level | 1 |
| increased circulating triiodothyronine level | 1 |
| increased body temperature | 1 |
| decreased body mass index | 1 |
| decreased brown fat cell lipid droplet size | 1 |
| decreased epididymal fat pad weight | 1 |
| decreased parametrial fat pad weight | 1 |
| decreased susceptibility to weight gain | 1 |
| impaired adaptive thermogenesis | 1 |
| postnatal lethality, incomplete penetrance | 1 |
| prenatal lethality, incomplete penetrance | 1 |
| decreased brown adipose tissue mass | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Streptococcus pyogenes MGAS315 | P0DB20 | 100.0% | Diamond |
| Streptococcus pyogenes SSI-1 | P0DB21 | 100.0% | Diamond |
| Mycobacterium tuberculosis variant bovis AF2122/97 | P64183 | 100.0% | Diamond |
| Mycobacterium tuberculosis CDC1551 | P9WN78 | 100.0% | Diamond |
| Mycobacterium tuberculosis H37Rv | P9WN79 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus USA300 | Q2FHD8 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus NCTC 8325 | Q2FYZ4 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus COL | Q5HGD1 | 100.0% | Diamond |
| Staphylococcus epidermidis RP62A | Q5HPP0 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus MSSA476 | Q6G9R2 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus MW2 | Q7A105 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus N315 | Q7A5V7 | 100.0% | Diamond |
| Staphylococcus epidermidis ATCC 12228 | Q8CPE6 | 100.0% | Diamond |
| Staphylococcus aureus subsp. aureus Mu50 | Q99UH2 | 100.0% | Diamond |
| Staphylococcus aureus RF122 | Q2YXR5 | 99.8% | Diamond |
| Staphylococcus aureus subsp. aureus MRSA252 | Q6GHD4 | 99.8% | Diamond |
| Streptococcus pyogenes serotype M1 | Q99YI8 | 99.5% | Diamond |
| Streptococcus pyogenes MGAS8232 | Q8NZX0 | 99.2% | Diamond |
| Macaca fascicularis | Q4R755 | 99.0% | Diamond |
| Bos taurus | A6QLU1 | 97.1% | Diamond |
| Streptococcus pyogenes MGAS10394 | Q5XAK0 | 95.1% | Diamond |
| Mesocricetus auratus | A7DZP8 | 92.6% | Diamond |
| Mycobacterium leprae TN | P53435 | 90.9% | Diamond |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 | Q49X94 | 81.1% | Diamond |
| Staphylococcus haemolyticus JCSC1435 | Q4L608 | 80.1% | Diamond |
| Streptococcus pneumoniae TIGR4 | P35596 | 75.8% | Diamond |
| Bacillus subtilis subsp. subtilis str. 168 | P18158 | 61.8% | Diamond |
| Enterococcus casseliflavus | O86963 | 61.4% | Diamond |
| Escherichia coli K-12 | P13035 | 61.1% | Diamond |
| Lactococcus lactis subsp. lactis Il1403 | Q9CG65 | 59.9% | Diamond |
| Schizosaccharomyces pombe 972h- | O14400 | 54.7% | Diamond |
| Saccharomyces cerevisiae S288C | P32191 | 54.7% | Diamond |
| Brucella abortus 2308 | Q2YIQ2 | 52.0% | Diamond |
| Arabidopsis thaliana | Q9SS48 | 52.0% | Diamond |
| Dictyostelium discoideum | Q54QC1 | 49.4% | Diamond |
| Encephalitozoon cuniculi GB-M1 | Q8SR40 | 42.8% | Diamond |
| Schistosoma mansoni | Q07167 | 42.4% | Diamond |
| Synechocystis sp. PCC 6803 substr. Kazusa | P74257 | 38.3% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| TRG-GCC2-2 | tRNA | 100189208 |
| FLJ46875 | ncRNA | 440918 |
| TRA-CGC3-1 | tRNA | 100189021 |
| LINC01958 | ncRNA | 105373708 |
| LINC03176 | ncRNA | 124907897 |
| NR4A2 | protein-coding | 4929 |
| LINC01876 | ncRNA | 101929378 |
Protein
Protein identifiers
Glycerol-3-phosphate dehydrogenase, mitochondrial — P43304 (reviewed: P43304)
Alternative names: mitochondrial glycerophosphate dehydrogenase gene, mtGPD
All UniProt accessions (4): E7EM56, E9PDK4, F5GYK7, P43304
UniProt curated annotations — full annotation on UniProt →
Function. Calcium-responsive mitochondrial glycerol-3-phosphate dehydrogenase which seems to be a key component of the pancreatic beta-cell glucose-sensing device.
Subcellular location. Mitochondrion.
Activity regulation. Calcium-binding enhance the activity of the enzyme.
Pathway. Polyol metabolism; glycerol degradation via glycerol kinase pathway; glycerone phosphate from sn-glycerol 3-phosphate (anaerobic route): step 1/1.
Similarity. Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P43304-1 | 1 | yes |
| P43304-2 | 2 |
RefSeq proteins (2): NP_000399, NP_001076581 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000447 | G3P_DH_FAD-dep | Family |
| IPR002048 | EF_hand_dom | Domain |
| IPR006076 | FAD-dep_OxRdtase | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR031656 | DAO_C | Domain |
| IPR036188 | FAD/NAD-bd_sf | Homologous_superfamily |
| IPR038299 | DAO_C_sf | Homologous_superfamily |
Pfam: PF01266, PF13499, PF16901
Enzyme classification (BRENDA)
- EC 1.1.5.3 — glycerol-3-phosphate dehydrogenase (BRENDA: 17 organisms, 47 substrates, 82 inhibitors, 25 Km, 1 kcat entries)
Substrate kinetics (BRENDA)
12 substrates with measured Km, best-characterized 12. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| GLYCEROL 3-PHOSPHATE | 0.1–3.2 | 5 |
| SN-GLYCEROL 3-PHOSPHATE | 3.7–10 | 4 |
| DL-GLYCEROL 3-PHOSPHATE | 0.8–10.2 | 3 |
| 2,6-DICHLOROPHENOLINDOPHENOL | 0.076–0.125 | 2 |
| COENZYME Q1 | 0.013–0.052 | 2 |
| COENZYME Q0 | 0.125 | 1 |
| COENZYME Q10 | 0.05 | 1 |
| COENZYME Q2 | 0.023 | 1 |
| COENZYME Q6 | 0.11 | 1 |
| DL-ALPHA-GLYCEROPHOSPHATE | 5.17 | 1 |
| FERRICYANIDE | 0.55 | 1 |
| PHENAZINE METHOSULFATE | 0.13 | 1 |
Catalyzed reactions (Rhea)
- a quinone + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + a quinol (RHEA:18977)
UniProt features (18 total): sequence variant 6, binding site 6, domain 2, transit peptide 1, chain 1, modified residue 1, splice variant 1
Structure
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P43304-F1 | 86.47 | 0.60 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Oxidoreductases, Metabolic proteins, Predicted intracellular proteins, Plasma proteins
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): mitochondria
Antibody reliability (HPA): IH enhanced · IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6)
| Position | Role |
|---|---|
| 71–99 | FAD |
| 672 | Ca(2+) |
| 674 | Ca(2+) |
| 676 | Ca(2+) |
| 678 | Ca(2+) |
| 683 | Ca(2+) |
Post-translational modifications (1)
| Type | Positions |
|---|---|
| Phosphotyrosine | 601 |
Function
Pathways and Gene Ontology
Reactome pathways
2 curated (TAS) of 7; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
7 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-1483166 | Synthesis of PA | curated |
| R-HSA-163560 | Triglyceride catabolism | curated |
| R-HSA-1483206 | Glycerophospholipid biosynthesis | — |
| R-HSA-1430728 | Metabolism | — |
| R-HSA-556833 | Metabolism of lipids | — |
| R-HSA-1483257 | Phospholipid metabolism | — |
| R-HSA-8979227 | Triglyceride metabolism | — |
MSigDB gene sets: 339 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, REACTOME_TRIGLYCERIDE_CATABOLISM, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GOBP_POLYOL_METABOLIC_PROCESS, GOBP_GROWTH, GOBP_POLYOL_CATABOLIC_PROCESS, KYNG_DNA_DAMAGE_DN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, BROWNE_HCMV_INFECTION_12HR_UP, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NADPLUS_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, MODULE_205
GO Biological Process (3): glycerol-3-phosphate metabolic process (GO:0006072), glycerol-3-phosphate shuttle (GO:0006127), glycerol catabolic process (GO:0019563)
GO Molecular Function (4): glycerol-3-phosphate dehydrogenase (quinone) activity (GO:0004368), calcium ion binding (GO:0005509), oxidoreductase activity (GO:0016491), metal ion binding (GO:0046872)
GO Cellular Component (2): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743)
Reactome top-level categories
5 top-level categories:
| Category | Pathways |
|---|---|
| Metabolism of lipids | 2 |
| Glycerophospholipid biosynthesis | 1 |
| Triglyceride metabolism | 1 |
| Phospholipid metabolism | 1 |
| Metabolism | 1 |
GO top-level categories
14 GO namespaces:
| Category | Terms |
|---|---|
| alditol phosphate metabolic process | 1 |
| glycerol-3-phosphate dehydrogenase (quinone) activity | 1 |
| NAD+ metabolic process | 1 |
| glycerol-3-phosphate dehydrogenase (NAD+) activity | 1 |
| glycerol metabolic process | 1 |
| alditol catabolic process | 1 |
| oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1 |
| metal ion binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 2 of 9 annotations. The rest are phylogenetic / computational / electronic (IEA).
2 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| mitochondrion | CC | direct assay |
| glycerol-3-phosphate dehydrogenase (quinone) activity | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 1,814 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPD2 | GPD1 | P21695 | 960 |
| GPD2 | GK2 | Q14410 | 802 |
| GPD2 | GK | P32189 | 794 |
| GPD2 | NFYC | Q13952 | 744 |
| GPD2 | NFYB | P25208 | 741 |
| GPD2 | PC | P11498 | 738 |
| GPD2 | NDE1 | Q9NXR1 | 662 |
| GPD2 | POLR2B | P30876 | 640 |
| GPD2 | NDEL1 | Q9GZM8 | 639 |
| GPD2 | GAPDH | P00354 | 501 |
| GPD2 | SLC2A2 | P11168 | 500 |
| GPD2 | GABPA | Q06546 | 491 |
| GPD2 | KCNJ15 | Q99712 | 487 |
| GPD2 | MICOS10 | Q5TGZ0 | 480 |
| GPD2 | CAPN10 | Q9HC96 | 463 |
IntAct
Human interaction partners of GPD2 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
7 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| PLEKHG7 | association | 0.350 | 1 |
| SFXN1 | association | 0.350 | 1 |
| SFXN3 | association | 0.350 | 1 |
| SLC8A3 | association | 0.350 | 1 |
| TRAPPC10 | association | 0.350 | 1 |
| TSPAN2 | association | 0.350 | 1 |
| TTC19 | association | 0.350 | 1 |
BioGRID (163 interactions; top human partners by supporting records): SLC39A4 (Affinity Capture-MS; 4 records), HAX1 (Affinity Capture-MS; 3 records), SLC39A8 (Affinity Capture-MS; 3 records), SLC8A3 (Affinity Capture-MS; 3 records), TRAPPC10 (Affinity Capture-MS; 3 records), WDFY2 (Affinity Capture-MS; 3 records), C12orf74 (Affinity Capture-MS; 2 records), GDPD5 (Affinity Capture-MS; 2 records), NUFIP1 (Affinity Capture-MS; 2 records), PARK2 (Affinity Capture-MS; 2 records), PHB (Cross-Linking-MS (XL-MS); 2 records), PVR (Affinity Capture-MS; 2 records), SFXN1 (Proximity Label-MS; 2 records), SLC25A51 (Proximity Label-MS; 2 records), ACO2 (Co-fractionation)
Disease & clinical
Genetic variants
Variant evidence for GPD2: 131 ClinVar records (2 pathogenic / likely pathogenic); 18 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
131 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 95 |
| Likely benign | 8 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (2)
Showing all 2 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 1807710 | GRCh37/hg19 2q24.1(chr2:156996368-157372032)x1 | Likely pathogenic | criteria provided, single submitter | 1 |
| 16081 | NM_000408.5(GPD2):c.1904T>C (p.Phe635Ser) | Pathogenic | no assertion criteria provided | 1 |
Per-variant reference — Sugi Variant
Explore GPD2’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 39 predictions of 1,646):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 2:156436514–156436515 | donor_loss | 1.0000 | 3 |
| 2:156476085 | acceptor_gain | 1.0000 | |
| 2:156476096–156476097 | acceptor_loss | 1.0000 | 6 |
| 2:156476208–156476209 | donor_loss | 1.0000 | 5 |
| 2:156510785 | acceptor_gain | 1.0000 | |
| 2:156510793 | acceptor_gain | 1.0000 | |
| 2:156510794–156510795 | acceptor_loss | 1.0000 | 5 |
| 2:156510921–156510922 | donor_loss | 1.0000 | 5 |
| 2:156512218–156512219 | acceptor_loss | 1.0000 | 6 |
| 2:156550600–156550601 | acceptor_loss | 1.0000 | 6 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
3 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 3.02e-06 |
| Liver Hepatocellular Carcinoma (TCGA) | unfavorable | 0.000294 |
| Lung Adenocarcinoma (TCGA) | unfavorable | 0.000805 |
Disease associations
OMIM: gene MIM:138430 | disease phenotypes: MIM:125853
GenCC curated gene-disease
1 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| diabetes mellitus, noninsulin-dependent | No Known Disease Relationship | Autosomal dominant |
Mondo (2): type 2 diabetes mellitus (MONDO:0005148), (MONDO:0007455)
HPO phenotypes
5 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000855 | Insulin resistance |
| HP:0003584 | Late onset |
| HP:0005978 | Type II diabetes mellitus |
| HP:0031819 | Increased waist to hip ratio |
GWAS associations
18 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST010002_401 | Refractive error | 1e-35 |
| GCST002759_2 | Motion sickness | 2e-29 |
| GCST006291_95 | Spherical equivalent or myopia (age of diagnosis) | 5e-15 |
| GCST003997_10 | Myopia | 6e-13 |
| GCST005316_115 | Intelligence (MTAG) | 8e-13 |
| GCST005316_116 | Intelligence (MTAG) | 7e-10 |
| GCST005141_68 | Cognitive ability (MTAG) | 1e-9 |
| GCST005142_48 | Cognitive ability | 4e-9 |
| GCST009640_20 | Urinary albumin-to-creatinine ratio | 1e-8 |
| GCST005839_7 | Depression | 2e-8 |
| GCST005316_117 | Intelligence (MTAG) | 3e-8 |
| GCST005316_184 | Intelligence (MTAG) | 4e-8 |
| GCST006269_645 | General cognitive ability | 4e-8 |
| GCST002875_95 | Diisocyanate-induced asthma | 1e-6 |
| GCST003963_3 | Possible neuropathic pain in post total joint replacement surgery for osteoarthritis | 3e-6 |
| GCST006088_22 | Familial squamous cell lung carcinoma | 3e-6 |
| GCST002548_3 | Ulcerative colitis | 6e-6 |
| GCST000635_3 | Response to statin therapy | 9e-6 |
EFO canonical traits (from GWAS)
8 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0006928 | motion sickness |
| EFO:0006995 | response to diisocyanate |
| EFO:0005762 | neuropathic pain |
| EFO:0004337 | intelligence |
| EFO:0004784 | self reported educational attainment |
| EFO:0006953 | family history of lung cancer |
| EFO:0004847 | age at onset |
| EFO:0007778 | urinary albumin to creatinine ratio |
MeSH disease descriptors
1 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003924 | Diabetes Mellitus, Type 2 | C18.452.394.750.149; C19.246.300 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3391681 (SINGLE PROTEIN)
Drugs by curated mechanism of action (ChEMBL)
Drugs whose curated ChEMBL mechanism of action targets the GPD2 protein itself — single-protein targets only (drugs acting on a protein family or complex that merely includes it are excluded). Includes antibodies and oligonucleotides that bioactivity screening does not capture.
1 curated-mechanism drugs:
| Drug | Modality | Max phase |
|---|---|---|
| METFORMIN HYDROCHLORIDE | Small molecule | 4 |
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
47 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, increases methylation | 6 |
| sodium arsenite | decreases expression, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, increases expression | 2 |
| Aflatoxin B1 | affects expression, decreases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, increases expression | 1 |
| trichostatin A | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression, increases expression | 1 |
| bisphenol S | increases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Troglitazone | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arbutin | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Clozapine | decreases expression | 1 |
| Coal | decreases expression, increases abundance | 1 |
| Coumestrol | increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E1FG | Abcam A-431 GPD2 KO | Cancer cell line | Female |
| CVCL_E1YD | HAP1 GPD2 (-) 2 | Cancer cell line | Male |
| CVCL_E1YE | HAP1 GPD2 (-) 3 | Cancer cell line | Male |
| CVCL_XP32 | HAP1 GPD2 (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 300 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00006163 | Phase 4 | COMPLETED | Computer-assisted Diabetes Self-management Interventions |
| NCT00036504 | Phase 4 | COMPLETED | Efficacy and Safety of Twice-Daily Insulin Lispro Low Mixture Compared to a Once-Daily Long Acting Insulin Comparator in Patients Who Have Been Using One or More Oral Antihyperglycemic Agents Without Insulin |
| NCT00044460 | Phase 4 | COMPLETED | Efficacy and Safety In Poorly Controlled Type 2 Diabetics |
| NCT00095446 | Phase 4 | COMPLETED | NovoLog Observation Trial in Subjects With Type 1 and Type 2 Diabetes |
| NCT00101751 | Phase 4 | COMPLETED | INITIATE Plus (INITiation of Insulin to Reach A1c TargEt) Study |
| NCT00110370 | Phase 4 | COMPLETED | Comparing Pre-Mixed Insulin With Insulin Glargine Combined With Rapid-Acting Insulin in Patients With Type 2 Diabetes |
| NCT00110448 | Phase 4 | COMPLETED | Japanese Primary Prevention of Atherosclerosis With Aspirin for Diabetes (JPAD) Trial |
| NCT00118950 | Phase 4 | COMPLETED | Effect of Metformin Versus Repaglinide Treatment in Non-Obese Type 2 Diabetic Patients Uncontrolled by Diet |
| NCT00118963 | Phase 4 | COMPLETED | Effect of Repaglinide Versus Metformin Treatment in Non-Obese Patients With Type-2-Diabetes |
| NCT00121966 | Phase 4 | COMPLETED | South Danish Diabetes Study: Evaluation of the Antidiabetic Treatment of Type 2 Diabetes Mellitus |
| NCT00123604 | Phase 4 | COMPLETED | Vascular Effects of Carvedilol Versus Metoprolol in Hypertensive Patients With Type 2 Diabetes |
| NCT00123643 | Phase 4 | COMPLETED | Vascular Effects of Rosiglitazone Versus Glyburide in Type 2 Diabetic Patients |
| NCT00124397 | Phase 4 | COMPLETED | Atorvastatin and Endothelial Function in Type 2 Diabetes Mellitus (ATTEND-Study) |
| NCT00129233 | Phase 4 | COMPLETED | Comparison of Valsartan With Amlodipine in Hypertensive Patients With Glucose Intolerance |
| NCT00133718 | Phase 4 | COMPLETED | A 2 Year Trial of Patients With Type 2 Diabetes Focusing on Cardiovascular Diagnostics and Metabolic Control |
| NCT00135070 | Phase 4 | TERMINATED | Hospital In-Patient Insulin Study |
| NCT00141232 | Phase 4 | COMPLETED | Evaluating Atorvastatin With Omega-3 Fatty Acids in Cardiovascular Risk Reduction in Patients With Type 2 Diabetes |
| NCT00144144 | Phase 4 | UNKNOWN | A Study on Ca Blocker Versus AII Antagonists in Hypertension With Type 2 Diabetes |
| NCT00149331 | Phase 4 | COMPLETED | The Effects of Two Education Strategies About Insulin on Patient Preferences and Perceptions About Insulin Therapy |
| NCT00162357 | Phase 4 | COMPLETED | Post-PCI:Cardiac Imaging in Patients With Diabetes to Detect Coronary Artery Blockages Previously Opened by Angioplasty |
| NCT00174681 | Phase 4 | COMPLETED | Tulip Study: Testing the Usefulness of Lantus When Initiated Prematurely In Patients With Type 2 Diabetes |
| NCT00174824 | Phase 4 | COMPLETED | Comparison of Insulin Glargine and NPH Human Insulin in Progression of Diabetic Retinopathy in Type 2 Diabetic Patients |
| NCT00177398 | Phase 4 | COMPLETED | Effect of Glargine Insulin on Glucose Control in Hospitalized Patients Who Receive Tube Feedings |
| NCT00179400 | Phase 4 | COMPLETED | The Role of Acute Combined PPAR Alpha and Gamma Stimulation on Insulin Action in Humans |
| NCT00184561 | Phase 4 | COMPLETED | Effectiveness and Safety of Biphasic Insulin Aspart 70/30 in Subjects With Type 2 Diabetes |
| NCT00184626 | Phase 4 | COMPLETED | Comparison of Insulin Glargine Versus Biphasic Insulin Aspart 30/70 or Biphasic Insulin Aspart 30/70 in Combination With Metformin in Subjects With Type 2 Diabetes. |
| NCT00191178 | Phase 4 | COMPLETED | Effects of Insulin in Perceived Mood Symptoms in Patients With Type 2 Diabetes |
| NCT00191282 | Phase 4 | COMPLETED | Hyperglycemia and Cardiovascular Outcomes With Type 2 Diabetes |
| NCT00191464 | Phase 4 | COMPLETED | Long-Term Effects of Insulin Plus Metformin Regimens on the Overall and Postprandial Glycemic Control of Patients With Type 2 Diabetes |
| NCT00192803 | Phase 4 | UNKNOWN | Non-Insulin Dependent Diabetes Mellitus (NIDDM) and Angiotensin Converting Enzyme 2 (ACE2): Diabetic Patients Treated With Antihypertensive Drugs |
| NCT00202033 | Phase 4 | COMPLETED | Impact of Self-Monitoring Blood Glucose Frequency on Glycemic Control in Patients With Type 2 Diabetes |
| NCT00205660 | Phase 4 | COMPLETED | Changes in Adiposity, Metabolic Measures From Atypicals to Aripiprazole |
| NCT00212290 | Phase 4 | COMPLETED | Insulin Resistance and Central Nervous System (CNS) Function in Type 2 Diabetes |
| NCT00212303 | Phase 4 | COMPLETED | Exercise Training in Type 2 Diabetes and Hypertension |
| NCT00225342 | Phase 4 | WITHDRAWN | Study Protocol for Rosiglitazone Versus Gliclazide in Diabetics With Angina |
| NCT00238472 | Phase 4 | COMPLETED | A Pilot Study to Evaluate the Effects of Nateglinide vs. Glibenclamide on Renal Hemodynamics and Albumin Excretion |
| NCT00239538 | Phase 4 | COMPLETED | SMOOTH - Blood Pressure Control in Diabetic/Obese Patients |
| NCT00240253 | Phase 4 | COMPLETED | A Study Evaluating the Efficacy and Safety of Adding Symlin® to Lantus® (Insulin Glargine) in Subjects With Type 2 Diabetes |
| NCT00240422 | Phase 4 | COMPLETED | Trial to Compare the Effects of Either Telmisartan (40-80 mg PO Once Daily) or Ramipril (5-10 mg PO Once Daily) on Renal Endothelial Dysfunction in Hypertensive Patients With Type 2 Diabetes |
| NCT00241085 | Phase 4 | COMPLETED | Effect of Valsartan on Proteinuria in Patients With Hypertension and Diabetes Mellitus |
| NCT00241605 | Phase 4 | COMPLETED | AVANDAMET Versus Metformin For Type 2 Diabetes Mellitus |
| NCT00254085 | Phase 4 | UNKNOWN | Substitution of First Phase Insulin Response in Patient With Type 2 Diabetes. |
| NCT00258804 | Phase 4 | COMPLETED | Insulin Glargine During and After the Period of Fasting in Ramadan |
| NCT00262548 | Phase 4 | COMPLETED | C-Reactive Protein (CRP) in Obese Diabetic Women |
| NCT00264589 | Phase 4 | COMPLETED | Exercise Training and Cardiovascular Function in Obesity and in Type 2 Diabetes |
| NCT00264901 | Phase 4 | COMPLETED | Comparison of Self Adjustment Versus Standard of Care Treatment in Subjects With Type 2 Diabetes |
| NCT00265746 | Phase 4 | WITHDRAWN | Prevention of Diabetes Mellitus Development in Women Who Had Already Experienced A Gestational Diabetes |
| NCT00268645 | Phase 4 | COMPLETED | Insulin Glargine in Type 2 Diabetes |
| NCT00272077 | Phase 4 | COMPLETED | Insulin Glargine in Type 2 Diabetes Mellitus |
| NCT00272831 | Phase 4 | COMPLETED | The Use of Cilostazol in Patients With Diabetic Nephropathy |
| NCT00274274 | Phase 4 | COMPLETED | Efficacy and Safety of a Fixed or a Flexible Supplementary Insulin Therapy in Type 2 Diabetes |
| NCT00279201 | Phase 4 | COMPLETED | The DURABLE Trial: Evaluating the Durability of Starter Insulin Regimens in Patients With Type 2 Diabetes (IOOV) |
| NCT00282360 | Phase 4 | COMPLETED | Effect of Metabolic Therapy in Patients With Chronic Ischemic Heart Disease |
| NCT00282451 | Phase 4 | COMPLETED | Effect of Biphasic Insulin Compared to Biphasic Insulin Combined With Insulin Aspart, With or Without Metformin in Type 2 Diabetes |
| NCT00283049 | Phase 4 | TERMINATED | Insulin Glargine Injection Treatment in Place of Thiazolidinedione (TZD), Sulfonylurea, or Metformin in Triple Agent Therapy for Type 2 Diabetes Mellitus (T2DM) Adult Subjects With Unsatisfactory Control |
| NCT00283777 | Phase 4 | COMPLETED | Chromium and Insulin Action |
| NCT00290394 | Phase 4 | COMPLETED | Ambulatory Blood Pressure Reduction After Rosiglitazone Treatment In Normotensive Type 2 Diabetic Patients |
| NCT00296296 | Phase 4 | COMPLETED | Immunosuppression Impact on the Metabolic Control of Kidney Transplant With Pre-Existing Type 2 Diabetes (DM) |
| NCT00300911 | Phase 4 | COMPLETED | Effects of Rosiglitazone on Plasma BNP Levels and Left Ventricular Dysfunction |
| NCT00306176 | Phase 4 | COMPLETED | Rosiglitazone and Exercise in Patients With Type 2 Diabetes Mellitus |
Related Atlas pages
- Associated diseases: type 2 diabetes mellitus
- Targeted by drugs: Metformin