GPHN
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Also known as KIAA1385GEPHGPH
Summary
GPHN (gephyrin, HGNC:15465) is a protein-coding gene on chromosome 14q23.3, encoding Gephyrin (Q9NQX3). Microtubule-associated protein involved in membrane protein-cytoskeleton interactions.
This gene encodes a neuronal assembly protein that anchors inhibitory neurotransmitter receptors to the postsynaptic cytoskeleton via high affinity binding to a receptor subunit domain and tubulin dimers. In nonneuronal tissues, the encoded protein is also required for molybdenum cofactor biosynthesis. Mutations in this gene may be associated with the neurological condition hyperplexia and also lead to molybdenum cofactor deficiency. Numerous alternatively spliced transcript variants encoding different isoforms have been described; however, the full-length nature of all transcript variants is not currently known.
Source: NCBI Gene 10243 — RefSeq curated summary.
At a glance
- Gene–disease (curated): sulfite oxidase deficiency due to molybdenum cofactor deficiency type C (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 2,083 total — 94 pathogenic, 56 likely-pathogenic
- Phenotypes (HPO): 52
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_020806
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15465 |
| Approved symbol | GPHN |
| Name | gephyrin |
| Location | 14q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1385, GEPH, GPH |
| Ensembl gene | ENSG00000171723 |
| Ensembl biotype | protein_coding |
| OMIM | 603930 |
| Entrez | 10243 |
Gene structure
Transcript identifiers
Ensembl transcripts: 36 — 27 protein_coding, 4 nonsense_mediated_decay, 3 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000315266, ENST00000459628, ENST00000478722, ENST00000543237, ENST00000544752, ENST00000553936, ENST00000555456, ENST00000555503, ENST00000555527, ENST00000555668, ENST00000556020, ENST00000556240, ENST00000556501, ENST00000556633, ENST00000557654, ENST00000557678, ENST00000903921, ENST00000903922, ENST00000903923, ENST00000903924, ENST00000903925, ENST00000903926, ENST00000903927, ENST00000903928, ENST00000903929, ENST00000903930, ENST00000923413, ENST00000923414, ENST00000960380, ENST00000960381, ENST00000960382, ENST00000960383, ENST00000960384, ENST00000960385, ENST00000960386, ENST00000960387
RefSeq mRNA: 8 — MANE Select: NM_020806
NM_001024218, NM_001377514, NM_001377515, NM_001377516, NM_001377517, NM_001377518, NM_001377519, NM_020806
CCDS: CCDS32103, CCDS9777
Canonical transcript exons
ENST00000478722 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001955675 | 67180804 | 67181803 |
| ENSE00003462253 | 67110140 | 67110259 |
| ENSE00003476022 | 66824474 | 66824566 |
| ENSE00003489542 | 67058649 | 67058786 |
| ENSE00003492602 | 66922666 | 66922938 |
| ENSE00003500755 | 67143362 | 67143449 |
| ENSE00003512258 | 66776464 | 66776521 |
| ENSE00003518027 | 67111861 | 67111919 |
| ENSE00003529512 | 67179578 | 67179674 |
| ENSE00003556897 | 66924194 | 66924292 |
| ENSE00003575659 | 67113018 | 67113171 |
| ENSE00003585682 | 67100856 | 67100911 |
| ENSE00003586912 | 67159415 | 67159488 |
| ENSE00003594779 | 67023633 | 67023675 |
| ENSE00003603291 | 66681107 | 66681185 |
| ENSE00003615648 | 66965191 | 66965325 |
| ENSE00003639837 | 67168933 | 67169036 |
| ENSE00003657091 | 66916003 | 66916069 |
| ENSE00003666440 | 67165162 | 67165226 |
| ENSE00003673402 | 66879939 | 66880033 |
| ENSE00003677762 | 67122256 | 67122377 |
| ENSE00003690665 | 67088983 | 67089075 |
| ENSE00003900900 | 66508147 | 66508591 |
Expression profiles
Bgee: expression breadth ubiquitous, 270 present calls, max score 95.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 35.8614 / max 602.8518, expressed in 1804 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 140191 | 28.4245 | 1801 |
| 140194 | 3.7870 | 799 |
| 140190 | 2.1991 | 1036 |
| 140193 | 0.5913 | 217 |
| 140192 | 0.3678 | 150 |
| 207262 | 0.2507 | 105 |
| 140196 | 0.1926 | 53 |
| 140195 | 0.0483 | 28 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cerebellar cortex | UBERON:0002129 | 95.81 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 95.80 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 95.60 | gold quality |
| cortical plate | UBERON:0005343 | 95.46 | gold quality |
| cerebellum | UBERON:0002037 | 94.76 | gold quality |
| right lobe of liver | UBERON:0001114 | 93.19 | gold quality |
| prefrontal cortex | UBERON:0000451 | 93.15 | gold quality |
| right frontal lobe | UBERON:0002810 | 92.47 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 92.46 | gold quality |
| cingulate cortex | UBERON:0003027 | 92.35 | gold quality |
| primary visual cortex | UBERON:0002436 | 92.29 | gold quality |
| caudate nucleus | UBERON:0001873 | 92.25 | gold quality |
| nucleus accumbens | UBERON:0001882 | 92.22 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.10 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 91.81 | gold quality |
| neocortex | UBERON:0001950 | 91.60 | gold quality |
| frontal cortex | UBERON:0001870 | 91.36 | gold quality |
| frontal lobe | UBERON:0016525 | 91.36 | gold quality |
| putamen | UBERON:0001874 | 91.13 | gold quality |
| amygdala | UBERON:0001876 | 90.83 | gold quality |
| cerebral cortex | UBERON:0000956 | 90.72 | gold quality |
| telencephalon | UBERON:0001893 | 90.69 | gold quality |
| ganglionic eminence | UBERON:0004023 | 90.66 | gold quality |
| liver | UBERON:0002107 | 90.34 | gold quality |
| colonic epithelium | UBERON:0000397 | 90.27 | gold quality |
| forebrain | UBERON:0001890 | 89.74 | gold quality |
| brain | UBERON:0000955 | 89.64 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 89.35 | gold quality |
| Ammon’s horn | UBERON:0001954 | 89.29 | gold quality |
| occipital lobe | UBERON:0002021 | 89.28 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 18.67 |
| E-ANND-3 | yes | 12.23 |
| E-MTAB-6678 | yes | 8.23 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
92 targeting GPHN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-3065-3P | 99.87 | 70.25 | 1407 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-383-3P | 99.85 | 65.84 | 1359 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-4677-5P | 99.70 | 70.09 | 1940 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 30)
- crystal structure of N terminal G domain (PMID:11554796)
- Gephyrin may have a central organizer role in assembling and stabilizing inhibitory postsynaptic membranes in human brain and is similar in function to those observed in the rodent brain. (PMID:12535948)
- the N10Y mutation and alternative splicing of GPHN transcripts do not affect interactions with glycine receptor but may affect other interactions with the cytoskeleton or gephyrin accessory proteins (PMID:12684523)
- Review: A total of 32 different disease-causing mutations, including several common to more than one family, have been identified in molybdenum cofactor-deficient patients and their relatives (PMID:12754701)
- Colocalization of immunoreactivities for gephyrin and glycine receptor subunits was detected in the dorsal and ventral horns of the spinal cord, the hypoglossal nucleus and the medial vestibular nucleus of the medulla. (PMID:14622920)
- GPHN as an MLL-GPHN chimera is able to transform hematopoietic progenitors; a tubulin-binding domain of GPHN is necessary and sufficient for this activity and also confers oligomerization capacity on MLL protein, which may contribute to leukemogenesis (PMID:14751928)
- Within clusters, we identified two subpopulations of GlyR with distinct degrees of stabilization between receptors and scaffolding proteins. (PMID:17293395)
- Gephyrin plays a role in synaptic function by interacting with GRIP1 splice forms at GABAergic synapses in transfected cultured hippocampal neurons. (PMID:18315564)
- Data are consistent with the postsynaptic gephyrin scaffold acting as a platform for protein phosphatase 1 (PP1), which regulates gephyrin cluster size by dephosphorylation of gephyrin- or cytoskeleton-associated proteins. (PMID:20206270)
- Study propose that the collybistin-gephyrin complex has an intimate role in the clustering of GABA(A)Rs containing the alpha2 subunit. (PMID:20622020)
- we did not obtain evidence for gephyrin gene mutations in patients with temporal lobe epilepsy (PMID:21071388)
- Data demonstrate the direct interaction between DYNLL1 and peptides derived from ASFV p54 and gephyrin interacting sequences. (PMID:21094642)
- Gephyrin expression is significantly lower in the temporal neocortex of temporal lobe epilepsy (TLE) patients and may be involved in the development of TLE. (PMID:21404332)
- The authors have identified a protein kinase C (PKC) phosphorylation site within the cytoplasmic domain of the beta-subunit of the GlyR (residue S403) that causes a reduction of the binding affinity between the receptor and gephyrin. (PMID:21829170)
- The gephyrin’s presence in a cytosolic 600 kDa protein complex suggests that its metabolic and/or other non-neuronal functions are exerted in the cytoplasm and are not confined to a particular subcellular compartment. (PMID:22270318)
- Phosphorylation of gephyrin in hippocampal neurons by cyclin-dependent kinase CDK5 at Ser-270 is dependent on collybistin. (PMID:22778260)
- A reduction in the number of gephyrin clusters in primary neurons reduces GABA signaling. (PMID:23077067)
- Rare exonic deletions implicate the synaptic organizer Gephyrin (GPHN) in risk for autism, schizophrenia and seizures. (PMID:23393157)
- Extracellular signal-regulated kinase and glycogen synthase kinase 3beta regulate gephyrin postsynaptic aggregation and GABAergic synaptic function in a calpain-dependent mechanism (PMID:23408424)
- abnormal accumulations of gephyrin are highly correlated with the neuropathologic diagnosis of Alzheimer disease in 17 AD versus 14 control cases. Furthermore, gephyrin accumulations were specific for AD. (PMID:24128675)
- The enhancement of Cb-induced gephyrin clustering by GTP-TC10 does not depend on the guanine nucleotide exchange activity of Cb but involves an interaction that resembles reported interactions of other small GTPases with their effectors (PMID:24297911)
- Structural exonic microdeletions affecting the GPHN gene constitute a rare genetic risk factor for IGE and other neuropsychiatric disorders by an impairment of the GABAergic inhibitory synaptic transmission. (PMID:24561070)
- The N-terminal region of GABRA3 and the GlyR beta subunit occupies the same binding site of gephyrin. (PMID:25531214)
- Results show that PKC-dependent phosphorylation of GAP43 plays a critical role in regulating postsynaptic gephyrin aggregation in developing GABAergic synapses. (PMID:25755278)
- A yin-yang haplotype pattern encompassing gephyrin consists of 284 divergent nucleotide states and both variants vary drastically from their mutual ancestral haplotype, suggesting rapid evolution. (PMID:25813846)
- A missense mutation of gephyrin that was unable to synthesize MoCo and activate MoCo-dependent enzymes was identified. (PMID:26613940)
- these data reveal that IQSEC3 acts together with gephyrin to regulate inhibitory synapse development. (PMID:27002143)
- This study shown that the SNPs located in the rs723432 (Pallele=0.007; uncorrected) in the GPHN gene showed associated with Japanese individuals affected with schizophrenia. (PMID:28073605)
- Using quantitative photoactivated localisation microscopy the authors found that alpha-1 and alpha-3 containing glycine receptors display the same alpha3:beta2 stoichiometry and gephyrin binding. (PMID:28883437)
- Complex regulation of Gephyrin splicing is a determinant of inhibitory postsynaptic diversity. (PMID:35717442)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gphna | ENSDARG00000089076 |
| danio_rerio | gphnb | ENSDARG00000100851 |
| mus_musculus | Gphn | ENSMUSG00000047454 |
| rattus_norvegicus | Gphn | ENSRNOG00000064630 |
| drosophila_melanogaster | cin | FBGN0000316 |
| caenorhabditis_elegans | WBGENE00003385 |
Protein
Protein identifiers
Gephyrin — Q9NQX3 (reviewed: Q9NQX3)
All UniProt accessions (9): Q9NQX3, F5H039, G3V355, G3V4D2, G3V4R0, G3V582, H0YIY4, H0YJ30, H0YJR5
UniProt curated annotations — full annotation on UniProt →
Function. Microtubule-associated protein involved in membrane protein-cytoskeleton interactions. It is thought to anchor the inhibitory glycine receptor (GLYR) to subsynaptic microtubules. Acts as a major instructive molecule at inhibitory synapses, where it also clusters GABA type A receptors. Also has a catalytic activity and catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.
Subunit / interactions. Homotrimer, homodimer and homooligomer. Interacts with GABARAP. Interacts with SRGAP2 (via SH3 domain). Interacts with GABRA3. Interacts with GLRB. GABRA3 and GLRB occupy overlapping binding sites. Interacts with ARHGAP32; IQSEC3, INSYN1 and INSYN2A.
Subcellular location. Postsynaptic cell membrane. Cell membrane. Cytoplasm. Cytosol. Cytoskeleton. Cell projection. Dendrite. Postsynaptic density.
Post-translational modifications. Palmitoylated. Palmitoylation is stimulated by GABA type A receptors activity. Palmitoylation by ZDHHC12 regulates clustering at synapses.
Disease relevance. Molybdenum cofactor deficiency C (MOCODC) [MIM:615501] A form of molybdenum cofactor deficiency, an autosomal recessive metabolic disorder leading to the pleiotropic loss of molybdoenzyme activities. It is clinically characterized by onset in infancy of poor feeding, intractable seizures, severe psychomotor retardation, and death in early childhood in most patients. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited by copper and tungsten.
Pathway. Cofactor biosynthesis; molybdopterin biosynthesis.
Similarity. In the N-terminal section; belongs to the MoaB/Mog family. In the C-terminal section; belongs to the MoeA family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NQX3-1 | 1 | yes |
| Q9NQX3-2 | 2 |
RefSeq proteins (8): NP_001019389, NP_001364443, NP_001364444, NP_001364445, NP_001364446, NP_001364447, NP_001364448, NP_065857* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001453 | MoaB/Mog_dom | Domain |
| IPR005110 | MoeA_linker/N | Domain |
| IPR005111 | MoeA_C_domain_IV | Domain |
| IPR008284 | MoCF_biosynth_CS | Conserved_site |
| IPR036135 | MoeA_linker/N_sf | Homologous_superfamily |
| IPR036425 | MoaB/Mog-like_dom_sf | Homologous_superfamily |
| IPR036688 | MoeA_C_domain_IV_sf | Homologous_superfamily |
| IPR038987 | MoeA-like | Family |
Pfam: PF00994, PF03453, PF03454
Catalyzed reactions (Rhea), 2 shown:
- molybdopterin + ATP + H(+) = adenylyl-molybdopterin + diphosphate (RHEA:31331)
- adenylyl-molybdopterin + molybdate = Mo-molybdopterin + AMP + H(+) (RHEA:35047)
UniProt features (59 total): binding site 14, modified residue 10, helix 10, strand 7, region of interest 5, sequence variant 3, lipid moiety-binding region 2, mutagenesis site 2, compositionally biased region 2, chain 1, splice variant 1, sequence conflict 1, turn 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1JLJ | X-RAY DIFFRACTION | 1.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NQX3-F1 | 84.15 | 0.72 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (14): 524; 525; 525; 526; 526; 573; 573; 574; 575; 580; 626; 626 …
Post-translational modifications (12): 188, 194, 198, 200, 262, 265, 266, 268, 270, 305, 212, 284
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 212 | decreased palmitoylation. decreased clustering at synaptic membranes. decreased function in gamma-aminobutyric acid rece |
| 284 | decreased palmitoylation. decreased clustering at synaptic membranes. decreased function in gamma-aminobutyric acid rece |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-947581 | Molybdenum cofactor biosynthesis |
MSigDB gene sets: 355 (showing top):
GOBP_NEUROMUSCULAR_JUNCTION_DEVELOPMENT, GOBP_SYNAPSE_ASSEMBLY, GCANCTGNY_MYOD_Q6, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, ATGTTAA_MIR302C, GOBP_RESPONSE_TO_METAL_ION, NFKB_C, GOBP_CELL_JUNCTION_ORGANIZATION, GOBP_POSTSYNAPTIC_MEMBRANE_ORGANIZATION, TGIF_01, MORI_SMALL_PRE_BII_LYMPHOCYTE_DN, ACATATC_MIR190
GO Biological Process (14): Mo-molybdopterin cofactor biosynthetic process (GO:0006777), synapse assembly (GO:0007416), establishment of synaptic specificity at neuromuscular junction (GO:0007529), response to metal ion (GO:0010038), establishment of protein localization (GO:0045184), glycine receptor clustering (GO:0072579), gamma-aminobutyric acid receptor clustering (GO:0097112), neurotransmitter receptor localization to postsynaptic specialization membrane (GO:0099645), phosphate-containing compound metabolic process (GO:0006796), molybdopterin cofactor biosynthetic process (GO:0032324), synapse organization (GO:0050808), synaptic transmission, GABAergic (GO:0051932), protein localization to membrane (GO:0072657), organophosphate biosynthetic process (GO:0090407)
GO Molecular Function (14): signaling receptor binding (GO:0005102), ATP binding (GO:0005524), nitrate reductase activity (GO:0008940), protein-macromolecule adaptor activity (GO:0030674), identical protein binding (GO:0042802), molybdopterin cofactor binding (GO:0043546), metal ion binding (GO:0046872), molybdopterin adenylyltransferase activity (GO:0061598), molybdopterin molybdotransferase activity (GO:0061599), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), protein binding (GO:0005515), transferase activity (GO:0016740), molecular adaptor activity (GO:0060090)
GO Cellular Component (19): cytoplasm (GO:0005737), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), cytoplasmic side of plasma membrane (GO:0009898), postsynaptic density (GO:0014069), dendrite (GO:0030425), dendritic spine (GO:0043197), postsynaptic membrane (GO:0045211), inhibitory synapse (GO:0060077), synaptic membrane (GO:0097060), glycinergic synapse (GO:0098690), GABA-ergic synapse (GO:0098982), postsynaptic specialization, intracellular component (GO:0099091), postsynaptic specialization (GO:0099572), membrane (GO:0016020), cell projection (GO:0042995), synapse (GO:0045202), postsynapse (GO:0098794)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of water-soluble vitamins and cofactors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| synapse | 5 |
| protein binding | 3 |
| binding | 3 |
| postsynapse | 3 |
| synapse organization | 2 |
| postsynaptic membrane organization | 2 |
| neurotransmitter-gated ion channel clustering | 2 |
| molecular_function | 2 |
| intracellular membraneless organelle | 2 |
| postsynaptic specialization | 2 |
| molybdenum incorporation into molybdenum-molybdopterin complex | 1 |
| Mo-molybdopterin cofactor metabolic process | 1 |
| molybdopterin cofactor biosynthetic process | 1 |
| GTP 3’,8’-cyclase activity | 1 |
| cyclic pyranopterin monophosphate synthase activity | 1 |
| nervous system development | 1 |
| cell junction assembly | 1 |
| neuromuscular junction development | 1 |
| response to chemical | 1 |
| establishment of localization | 1 |
| protein-containing complex localization | 1 |
| receptor localization to synapse | 1 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 1 |
| protein localization to postsynaptic specialization membrane | 1 |
| metabolic process | 1 |
| molybdopterin synthase activity | 1 |
| cysteine desulfurase activity | 1 |
| molybdopterin cofactor metabolic process | 1 |
| molybdopterin adenylyltransferase activity | 1 |
| molybdopterin-synthase sulfurtransferase activity | 1 |
| molybdopterin-synthase adenylyltransferase activity | 1 |
| organophosphate biosynthetic process | 1 |
| cell junction organization | 1 |
| chemical synaptic transmission | 1 |
| intracellular protein localization | 1 |
| localization within membrane | 1 |
| biosynthetic process | 1 |
| organophosphate metabolic process | 1 |
| adenyl ribonucleotide binding | 1 |
Protein interactions and networks
STRING
2326 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPHN | ARHGEF9 | O43307 | 997 |
| GPHN | NLGN2 | Q8NFZ4 | 968 |
| GPHN | GARS1 | P41250 | 963 |
| GPHN | GLRB | P48167 | 959 |
| GPHN | MOCS1 | Q9NZB8 | 957 |
| GPHN | MOCS2 | O96007 | 949 |
| GPHN | SLC32A1 | Q9H598 | 940 |
| GPHN | GABARAP | O95166 | 932 |
| GPHN | GLRA1 | P23415 | 900 |
| GPHN | DLG4 | P78352 | 885 |
| GPHN | SUOX | P51687 | 878 |
| GPHN | PFN1 | P07737 | 861 |
| GPHN | MTOR | P42345 | 861 |
| GPHN | SLC6A5 | Q9Y345 | 849 |
| GPHN | AOX1 | Q06278 | 837 |
IntAct
67 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PRPF4 | PPIH | psi-mi:“MI:0914”(association) | 0.910 |
| GPHN | DYNLL1 | psi-mi:“MI:0407”(direct interaction) | 0.860 |
| DYNLL1 | BLTP3B | psi-mi:“MI:0914”(association) | 0.730 |
| YWHAG | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| AKT1 | RPS6KB1 | psi-mi:“MI:0914”(association) | 0.640 |
| DYNLL2 | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| DVL1 | DVL2 | psi-mi:“MI:0914”(association) | 0.620 |
| SYNGAP1 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| SYNGAP1 | SEC16A | psi-mi:“MI:0914”(association) | 0.530 |
| ZAR1L | BCL2L11 | psi-mi:“MI:0914”(association) | 0.530 |
| CIMAP1D | NMT2 | psi-mi:“MI:0914”(association) | 0.530 |
| TSSK1B | HSPA8 | psi-mi:“MI:0914”(association) | 0.530 |
| LAGE3 | CTSA | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEA4 | MAGEA8 | psi-mi:“MI:0914”(association) | 0.530 |
| DYNLL1 | SHMT2 | psi-mi:“MI:0914”(association) | 0.510 |
| DYNLL2 | SHMT2 | psi-mi:“MI:0914”(association) | 0.510 |
| SRGAP2 | GPHN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| Dynll1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| GPHN | SPATS1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GPHN | GPHN | psi-mi:“MI:0915”(physical association) | 0.370 |
| KHDRBS1 | GPHN | psi-mi:“MI:0915”(physical association) | 0.370 |
| GPHN | ACADVL | psi-mi:“MI:0915”(physical association) | 0.370 |
| CDCA5 | BDP1 | psi-mi:“MI:0914”(association) | 0.350 |
| TCF4 | OGT | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (107): GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), ARHGEF9 (Two-hybrid), GPHN (Affinity Capture-Western), VASP (Affinity Capture-Western), ENAH (Affinity Capture-Western), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS), GPHN (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8F5J9, A0JN27, F1LTR1, F1NBL0, O15294, P35438, P35439, P56558, P61201, P61202, P61203, P61599, P61600, P63138, P79101, P81436, Q03555, Q05586, Q13888, Q15303, Q27HV0, Q2PFM2, Q2TBV5, Q4L208, Q58ED9, Q5R1P0, Q5SP67, Q5ZJ75, Q61527, Q62956, Q6IQT4, Q6IR75, Q6P1K8, Q6P632, Q7ZXR3, Q8BUV3, Q8C6G8, Q8CGY8, Q8R4D1, Q91854
Diamond homologs: B8I7D0, O31703, P12281, P39205, P45210, P65407, P99139, P9WJQ4, P9WJQ5, Q03555, Q39054, Q44243, Q56066, Q56207, Q58080, Q58296, Q5HDT4, Q5HLX6, Q6G749, Q6GEG1, Q8BUV3, Q8CNE1, Q8NVA1, Q9NQX3, Q9PW38, O34457, P0AEZ9, P0AF00, P0AF03, P0AF04, P0AF05, P44645, P56421, P59014, P65406, P99137, Q56208, Q57631, Q5HDT2, Q5HLX4
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ERK1/2 | down-regulates | GPHN | phosphorylation |
| GSK3B | down-regulates | GPHN | phosphorylation |
| GABARAP | “up-regulates activity” | GPHN | binding |
| GPHN | “up-regulates activity” | ARHGEF9 | binding |
| GPHN | “up-regulates activity” | NLGN2 | binding |
| GPHN | up-regulates | Synaptic_plasticity | |
| GPHN | “up-regulates quantity by stabilization” | GABA-A | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2083 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 94 |
| Likely pathogenic | 56 |
| Uncertain significance | 1086 |
| Likely benign | 625 |
| Benign | 77 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069066 | NM_020806.5(GPHN):c.1156_1159dup (p.Val387fs) | Pathogenic |
| 1071767 | NM_152443.3(RDH12):c.393T>A (p.Cys131Ter) | Pathogenic |
| 1074324 | NM_016026.4(RDH11):c.230del (p.Lys77fs) | Pathogenic |
| 1075236 | NC_000014.8:g.(?67243172)(67291294_?)del | Pathogenic |
| 1301382 | NM_152443.3(RDH12):c.698T>A (p.Val233Asp) | Pathogenic |
| 1432165 | NM_016026.4(RDH11):c.237dup (p.Leu80fs) | Pathogenic |
| 1451652 | NM_152443.3(RDH12):c.52del (p.Met17_Val18insTer) | Pathogenic |
| 1452267 | NM_020806.5(GPHN):c.1907dup (p.Gly637fs) | Pathogenic |
| 1454036 | NM_152443.3(RDH12):c.43del (p.Leu15fs) | Pathogenic |
| 1454068 | NM_020806.5(GPHN):c.1234C>T (p.Arg412Ter) | Pathogenic |
| 1456691 | NC_000014.8:g.(?67490330)(67555812_?)del | Pathogenic |
| 1456692 | NC_000014.8:g.(?67147805)(67291304_?)del | Pathogenic |
| 1456696 | NC_000014.8:g.(?67346637)(67432062_?)del | Pathogenic |
| 1457557 | NC_000014.8:g.(?67147805)(67243259_?)del | Pathogenic |
| 1458284 | NC_000014.8:g.(?67243162)(67490412_?)del | Pathogenic |
| 1458569 | NM_020806.5(GPHN):c.277C>T (p.Arg93Ter) | Pathogenic |
| 1459461 | NC_000014.8:g.(?67525346)(67567648_?)del | Pathogenic |
| 1459465 | NC_000014.8:g.(?67382700)(67432062_?)del | Pathogenic |
| 161115 | NM_016026.4(RDH11):c.199C>T (p.Arg67Ter) | Pathogenic |
| 161116 | NM_016026.4(RDH11):c.322C>T (p.Arg108Ter) | Pathogenic |
| 1711873 | GRCh37/hg19 14q23.3(chr14:66292119-67108035)x3 | Pathogenic |
| 1929453 | NM_152443.3(RDH12):c.723del (p.Ser242fs) | Pathogenic |
| 1970808 | NM_152443.3(RDH12):c.546del (p.Ile183fs) | Pathogenic |
| 2014914 | NM_020806.5(GPHN):c.770_771del (p.His257fs) | Pathogenic |
| 2021431 | NM_020806.5(GPHN):c.802_803insG (p.Tyr268Ter) | Pathogenic |
| 2028217 | NM_020806.5(GPHN):c.630dup (p.Gln211fs) | Pathogenic |
| 2033928 | NM_020806.5(GPHN):c.747del (p.Ser250fs) | Pathogenic |
| 2036462 | NM_020806.5(GPHN):c.1560del (p.Thr520_Val521insTer) | Pathogenic |
| 2047 | NM_152443.3(RDH12):c.806_810del (p.Ala269fs) | Pathogenic |
| 2048 | NM_152443.3(RDH12):c.565C>T (p.Gln189Ter) | Pathogenic |
SpliceAI
7831 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:66513650:G:GT | donor_gain | 1.0000 |
| 14:66681095:A:AG | acceptor_gain | 1.0000 |
| 14:66681096:T:G | acceptor_gain | 1.0000 |
| 14:66681101:A:AG | acceptor_gain | 1.0000 |
| 14:66681102:T:G | acceptor_gain | 1.0000 |
| 14:66681102:TTTAG:T | acceptor_loss | 1.0000 |
| 14:66681104:TAGTG:T | acceptor_gain | 1.0000 |
| 14:66681105:A:AG | acceptor_gain | 1.0000 |
| 14:66681105:AGT:A | acceptor_gain | 1.0000 |
| 14:66681105:AGTGA:A | acceptor_gain | 1.0000 |
| 14:66681106:G:GC | acceptor_gain | 1.0000 |
| 14:66681106:GT:G | acceptor_gain | 1.0000 |
| 14:66681106:GTG:G | acceptor_gain | 1.0000 |
| 14:66681106:GTGA:G | acceptor_gain | 1.0000 |
| 14:66681106:GTGAG:G | acceptor_gain | 1.0000 |
| 14:66681181:TCTTT:T | donor_gain | 1.0000 |
| 14:66681183:TTT:T | donor_gain | 1.0000 |
| 14:66681183:TTTG:T | donor_loss | 1.0000 |
| 14:66681184:TT:T | donor_gain | 1.0000 |
| 14:66681184:TTGT:T | donor_loss | 1.0000 |
| 14:66681185:TGT:T | donor_loss | 1.0000 |
| 14:66681186:G:GG | donor_gain | 1.0000 |
| 14:66681186:G:T | donor_loss | 1.0000 |
| 14:66681187:TG:T | donor_loss | 1.0000 |
| 14:66681188:GAGTA:G | donor_loss | 1.0000 |
| 14:66681189:A:AA | donor_loss | 1.0000 |
| 14:66681190:G:C | donor_loss | 1.0000 |
| 14:66681190:G:GG | donor_gain | 1.0000 |
| 14:66824469:TTCA:T | acceptor_loss | 1.0000 |
| 14:66824471:CAG:C | acceptor_loss | 1.0000 |
AlphaMissense
5022 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:66508579:G:A | G18R | 1.000 |
| 14:66508579:G:C | G18R | 1.000 |
| 14:66508580:G:A | G18E | 1.000 |
| 14:66508586:T:C | L20P | 1.000 |
| 14:66681139:G:C | D33H | 1.000 |
| 14:66681158:T:C | L39P | 1.000 |
| 14:66824481:T:C | L70P | 1.000 |
| 14:66824489:T:A | W73R | 1.000 |
| 14:66824489:T:C | W73R | 1.000 |
| 14:66824517:T:A | I82K | 1.000 |
| 14:66824529:G:A | G86E | 1.000 |
| 14:66824532:G:A | G87E | 1.000 |
| 14:66824537:G:A | G89R | 1.000 |
| 14:66824537:G:C | G89R | 1.000 |
| 14:66824538:G:A | G89E | 1.000 |
| 14:66824540:T:C | F90L | 1.000 |
| 14:66824542:T:A | F90L | 1.000 |
| 14:66824542:T:G | F90L | 1.000 |
| 14:66880027:T:C | L128P | 1.000 |
| 14:66880033:G:C | R130T | 1.000 |
| 14:66880033:G:T | R130M | 1.000 |
| 14:66916010:T:C | C133R | 1.000 |
| 14:66916012:T:G | C133W | 1.000 |
| 14:66916013:G:A | G134R | 1.000 |
| 14:66916013:G:C | G134R | 1.000 |
| 14:66916014:G:A | G134E | 1.000 |
| 14:66916032:T:C | L140P | 1.000 |
| 14:66916035:T:A | I141K | 1.000 |
| 14:66916042:C:A | N143K | 1.000 |
| 14:66916042:C:G | N143K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000001299 (14:67283740 G>A), RS1000004027 (14:67372494 A>G), RS1000006035 (14:67455502 T>C), RS1000009227 (14:66911925 C>T), RS1000009300 (14:66920292 C>T), RS1000009876 (14:67719329 T>C), RS1000013774 (14:66742821 G>A), RS1000016137 (14:67453565 C>T), RS1000018226 (14:67127724 A>T), RS1000022562 (14:67314113 T>C), RS1000026875 (14:66912493 G>A), RS1000031806 (14:67135092 G>A,C), RS1000031994 (14:66702961 G>A), RS1000039190 (14:66764488 A>G), RS1000040280 (14:67455241 G>A)
Disease associations
OMIM: gene MIM:603930 | disease phenotypes: MIM:615501, MIM:612712, MIM:204000, MIM:149400, MIM:616108, MIM:268000, MIM:618010, MIM:181500, MIM:120970, MIM:252150
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| sulfite oxidase deficiency due to molybdenum cofactor deficiency type C | Strong | Autosomal recessive |
| complex neurodevelopmental disorder | Moderate | Autosomal dominant |
| hereditary hyperekplexia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| sulfite oxidase deficiency due to molybdenum cofactor deficiency type C | Moderate | AR |
Mondo (20): sulfite oxidase deficiency due to molybdenum cofactor deficiency type C (MONDO:0014212), Leber congenital amaurosis 13 (MONDO:0012990), Leber congenital amaurosis (MONDO:0018998), hyperekplexia 1 (MONDO:0007868), retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndrome (MONDO:0014495), atypical Rett syndrome (MONDO:0017746), retinitis pigmentosa (MONDO:0019200), inherited retinal dystrophy (MONDO:0019118), glycosylphosphatidylinositol biosynthesis defect 17 (MONDO:0060724), optic atrophy (MONDO:0003608), prostate cancer (MONDO:0008315), schizophrenia (MONDO:0005090), cone-rod dystrophy (MONDO:0015993), neurodevelopmental disorder (MONDO:0700092), sulfite oxidase deficiency due to molybdenum cofactor deficiency type A (MONDO:0009643)
Orphanet (14): Sulfite oxidase deficiency due to molybdenum cofactor deficiency type C (Orphanet:308400), Encephalopathy due to sulfite oxidase deficiency (Orphanet:833), Leber congenital amaurosis (Orphanet:65), Hereditary hyperekplexia (Orphanet:3197), Retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndrome (Orphanet:436245), Atypical Rett syndrome (Orphanet:3095), Retinitis pigmentosa (Orphanet:791), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Familial prostate cancer (Orphanet:1331), Cone rod dystrophy (Orphanet:1872), Sulfite oxidase deficiency due to molybdenum cofactor deficiency type A (Orphanet:308386), Hyperekplexia (Orphanet:306773), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
52 total (30 of 52 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000817 | Reduced eye contact |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001257 | Spasticity |
| HP:0001276 | Hypertonia |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001336 | Myoclonus |
| HP:0001347 | Hyperreflexia |
| HP:0001373 | Joint dislocation |
| HP:0001387 | Joint stiffness |
| HP:0001537 | Umbilical hernia |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002036 | Hiatus hernia |
| HP:0002063 | Rigidity |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002104 | Apnea |
| HP:0002123 | Generalized myoclonic seizure |
| HP:0002126 | Polymicrogyria |
| HP:0002197 | Generalized-onset seizure |
| HP:0002267 | Exaggerated startle response |
| HP:0002359 | Frequent falls |
| HP:0002360 | Sleep disturbance |
| HP:0002375 | Hypokinesia |
| HP:0002380 | Fasciculations |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001802_2 | Depression (quantitative trait) | 3.000000e-06 |
| GCST003055_4 | Tandem gait | 2.000000e-07 |
| GCST008161_62 | Waist circumference adjusted for body mass index | 6.000000e-06 |
| GCST009087_1 | Pneumococcal meningitis | 9.000000e-06 |
| GCST90000025_538 | Appendicular lean mass | 2.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0004980 | appendicular lean mass |
MeSH disease descriptors (13)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000071700 | Cone-Rod Dystrophies | C11.270.152; C11.768.585.658.250; C16.320.290.152 |
| D003704 | Dementia | C10.228.140.380; F03.615.400 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D000071017 | Hyperekplexia | C10.228.590 |
| D057130 | Leber Congenital Amaurosis | C11.270.516; C11.768.364 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| C567197 | Leber Congenital Amaurosis 13 (supp.) | |
| C565372 | Molybdenum Cofactor Deficiency, Complementation Group A (supp.) | |
| C565374 | Molybdenum Cofactor Deficiency, Complementation Group C (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, increases methylation | 5 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 4 |
| Cisplatin | decreases expression, increases expression | 3 |
| Valproic Acid | affects expression, increases expression | 3 |
| Aflatoxin B1 | affects expression, decreases methylation, increases methylation | 3 |
| sodium arsenite | increases abundance, decreases expression, affects cotreatment | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | affects cotreatment, increases methylation | 1 |
| chloroacetaldehyde | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| senecionine | decreases expression | 1 |
| senkirkine | decreases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| heliotrine | decreases expression | 1 |
| arsenite | affects binding, decreases reaction, increases reaction | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| coumarin | affects phosphorylation | 1 |
| beta-methylcholine | affects expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, decreases methylation | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| Bortezomib | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_SQ39 | HAP1 GPHN (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
274 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT00999609 | PHASE3 | ACTIVE_NOT_RECRUITING | Safety and Efficacy Study in Subjects With Leber Congenital Amaurosis |
| NCT06891443 | PHASE3 | RECRUITING | Study to Evaluate Sepofarsen in Subjects With Leber Congenital Amaurosis (LCA) Type 10 (HYPERION) |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT00100230 | PHASE2 | COMPLETED | DHA and X-Linked Retinitis Pigmentosa |
| NCT00447980 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Participants With Early Stage Retinitis Pigmentosa |
| NCT00447993 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Patients With Late Stage Retinitis Pigmentosa |
| NCT01233609 | PHASE2 | COMPLETED | Trial of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01399515 | PHASE2 | COMPLETED | Efficacy and Safety of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT01560715 | PHASE2 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
| NCT02609165 | PHASE2 | COMPLETED | Nerve Growth Factor Eye Drops Treatment in Patients With Retinitis Pigmentosa and Cystoid Macular Edema |
| NCT02661711 | PHASE2 | COMPLETED | Aflibercept for Macular Oedema With Underlying Retinitis Pigmentosa (AMOUR) Study |
| NCT02804360 | PHASE2 | UNKNOWN | Intravitreal Dexamethasone Implant in Retinitis Pigmentosa-related Macular Edema- a Retrospective Study |
| NCT02837640 | PHASE2 | UNKNOWN | Studying a Potential Protective Effect of L-Dopa on Retinitis Pigmentosa |
| NCT03073733 | PHASE2 | COMPLETED | Safety and Efficacy of Intravitreal Injection of Human Retinal Progenitor Cells in Adults With Retinitis Pigmentosa |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04356716 | PHASE2 | COMPLETED | Sildenafil for Treatment of Choroidal Ischemia |
| NCT04604899 | PHASE2 | COMPLETED | Safety of Repeat Intravitreal Injection of Human Retinal Progenitor Cells (jCell) in Adult Subjects With Retinitis Pigmentosa |
| NCT04763369 | PHASE2 | UNKNOWN | Investigation of Therapeutic Efficacy and Safety of UMSCs for the Management of Retinitis Pigmentosa (RP) |
| NCT04864496 | PHASE2 | UNKNOWN | Effects of Treatment With N- Acetylcysteine on Visual Outcomes in Patients With Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05085964 | PHASE2 | TERMINATED | An Open-Label Extension Study to Evaluate Safety & Tolerability of QR-421a in Subjects With Retinitis Pigmentosa |
| NCT05392179 | PHASE2 | COMPLETED | A Study in Subjects With Retinitis Pigmentosa |
| NCT06627179 | PHASE2 | RECRUITING | Study to Evaluate Ultevursen in Subjects With Retinitis Pigmentosa (RP) Due to Mutations in Exon 13 of the USH2A Gene |
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Related Atlas pages
- Associated diseases: complex neurodevelopmental disorder, sulfite oxidase deficiency due to molybdenum cofactor deficiency type C, hereditary hyperekplexia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atypical Rett syndrome, complex neurodevelopmental disorder, cone-rod dystrophy, dementia, glycosylphosphatidylinositol biosynthesis defect 17, hereditary breast ovarian cancer syndrome, hereditary hyperekplexia, hyperekplexia, hyperekplexia 1, inherited retinal dystrophy, Leber congenital amaurosis, Leber congenital amaurosis 13, optic atrophy, pneumococcal meningitis, retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndrome, sulfite oxidase deficiency due to molybdenum cofactor deficiency type A, sulfite oxidase deficiency due to molybdenum cofactor deficiency type C