GPM6A-AS1

Summary

GPM6A-AS1 (GPM6A antisense RNA 1, HGNC:55577) is a long non-coding RNA gene on chromosome 4q34.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55577
Approved symbol	GPM6A-AS1
Name	GPM6A antisense RNA 1
Location	4q34.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249106
Ensembl biotype	lncRNA
Entrez	101928590
RNAcentral	URS00000B5C51 — lncRNA, 1213 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000514864

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000514864 — 8 exons

Exon	Start	End
ENSE00002020782	175795836	175795928
ENSE00002025627	175798646	175798684
ENSE00002026232	175805926	175806079
ENSE00002069435	175800770	175800986
ENSE00002077332	175808601	175808762
ENSE00002080179	175811860	175812189
ENSE00002081077	175790307	175790417
ENSE00002087506	175806865	175806971

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 93.08.

Top tissues by expression

196 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.08	gold quality
cortical plate	UBERON:0005343	64.95	gold quality
cerebellar cortex	UBERON:0002129	64.70	gold quality
ganglionic eminence	UBERON:0004023	64.54	gold quality
cerebellar hemisphere	UBERON:0002245	64.52	gold quality
cerebellum	UBERON:0002037	62.94	gold quality
right hemisphere of cerebellum	UBERON:0014890	61.69	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.66	gold quality
ventricular zone	UBERON:0003053	61.62	gold quality
amygdala	UBERON:0001876	61.31	gold quality
anterior cingulate cortex	UBERON:0009835	61.10	gold quality
corpus callosum	UBERON:0002336	60.23	gold quality
left testis	UBERON:0004533	59.53	gold quality
putamen	UBERON:0001874	58.06	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.79	gold quality
testis	UBERON:0000473	57.57	gold quality
right testis	UBERON:0004534	56.68	gold quality
nucleus accumbens	UBERON:0001882	56.50	gold quality
skin of leg	UBERON:0001511	56.42	gold quality
right frontal lobe	UBERON:0002810	56.28	gold quality
caudate nucleus	UBERON:0001873	55.46	gold quality
prefrontal cortex	UBERON:0000451	55.28	gold quality
hypothalamus	UBERON:0001898	55.15	gold quality
neocortex	UBERON:0001950	54.58	gold quality
brain	UBERON:0000955	54.53	gold quality
forebrain	UBERON:0001890	53.62	gold quality
cerebral cortex	UBERON:0000956	53.61	gold quality
frontal cortex	UBERON:0001870	52.67	gold quality
Ammon’s horn	UBERON:0001954	52.43	gold quality
temporal lobe	UBERON:0001871	52.18	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.