GPR12
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Also known as GPCR21PPP1R84
Summary
GPR12 (G protein-coupled receptor 12, HGNC:4466) is a protein-coding gene on chromosome 13q12.13, encoding G-protein coupled receptor 12 (P47775). Brain-specific G protein-coupled receptor involved in regulating diverse physiological processes including neurite outgrowth, meiotic arrest, and lipid and carbohydrate metabolism.
Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and intracellular calcium ion homeostasis. Predicted to be located in membrane. Predicted to be active in cytoplasm and plasma membrane.
Source: NCBI Gene 2835 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 36 total
- Druggable target: yes
- MANE Select transcript:
NM_005288
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4466 |
| Approved symbol | GPR12 |
| Name | G protein-coupled receptor 12 |
| Location | 13q12.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GPCR21, PPP1R84 |
| Ensembl gene | ENSG00000132975 |
| Ensembl biotype | protein_coding |
| OMIM | 600752 |
| Entrez | 2835 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000381436, ENST00000405846, ENST00000881746
RefSeq mRNA: 1 — MANE Select: NM_005288
NM_005288
CCDS: CCDS9319
Canonical transcript exons
ENST00000405846 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001554465 | 26755200 | 26759842 |
| ENSE00001555433 | 26760579 | 26760786 |
Expression profiles
Bgee: expression breadth ubiquitous, 102 present calls, max score 96.54.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.0667 / max 81.9065, expressed in 118 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 136477 | 0.8110 | 106 |
| 136478 | 0.1644 | 76 |
| 136476 | 0.0913 | 39 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 96.54 | gold quality |
| ganglionic eminence | UBERON:0004023 | 86.11 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 80.46 | gold quality |
| cerebellar cortex | UBERON:0002129 | 80.43 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 79.48 | gold quality |
| cerebellum | UBERON:0002037 | 78.96 | gold quality |
| nucleus accumbens | UBERON:0001882 | 78.23 | gold quality |
| endometrium epithelium | UBERON:0004811 | 78.00 | gold quality |
| caudate nucleus | UBERON:0001873 | 77.49 | gold quality |
| prefrontal cortex | UBERON:0000451 | 77.41 | gold quality |
| putamen | UBERON:0001874 | 76.99 | gold quality |
| embryo | UBERON:0000922 | 76.80 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 75.07 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 74.64 | gold quality |
| triceps brachii | UBERON:0001509 | 73.70 | gold quality |
| gluteal muscle | UBERON:0002000 | 73.69 | gold quality |
| neocortex | UBERON:0001950 | 73.31 | gold quality |
| frontal cortex | UBERON:0001870 | 73.26 | gold quality |
| cingulate cortex | UBERON:0003027 | 73.17 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 72.93 | gold quality |
| telencephalon | UBERON:0001893 | 72.14 | gold quality |
| pancreatic ductal cell | CL:0002079 | 72.07 | gold quality |
| right frontal lobe | UBERON:0002810 | 72.06 | gold quality |
| cerebral cortex | UBERON:0000956 | 71.90 | gold quality |
| skin of leg | UBERON:0001511 | 71.28 | gold quality |
| tibialis anterior | UBERON:0001385 | 70.86 | silver quality |
| olfactory bulb | UBERON:0002264 | 70.77 | gold quality |
| brain | UBERON:0000955 | 70.05 | gold quality |
| forebrain | UBERON:0001890 | 69.62 | gold quality |
| central nervous system | UBERON:0001017 | 69.50 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 2.93 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
145 targeting GPR12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-1229-3P | 99.97 | 66.49 | 906 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
Literature-anchored findings (GeneRIF, showing 6)
- control of gene expression in vascular endothelial cells in the presence of fluid shear stress and classifies it as a sphingosine 1-phosphate receptor (PMID:12649592)
- GPR12 may play a role in cell proliferation and survival (PMID:22430950)
- Since we have demonstrated that CBD is an inverse agonist for GPR12, this provides novel mechanism of action for CBD, and an initial chemical scaffold upon which highly potent and efficacious agents acting on GPR12 may be developed with the ultimate goal of blocking cancer metastasis. (PMID:28888984)
- GPR12 inhibits migration and promotes apoptosis in esophageal cancer and hypopharyngeal cancer cells. (PMID:33742771)
- Structural insight into the constitutive activity of human orphan receptor GPR12. (PMID:36593162)
- Exosomal miR-105-5p derived from bladder cancer stem cells targets for GPR12 to promote the malignancy of bladder cancer. (PMID:37789353)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gpr12 | ENSDARG00000062934 |
| mus_musculus | Gpr12 | ENSMUSG00000041468 |
| rattus_norvegicus | Gpr12 | ENSRNOG00000039832 |
Paralogs (18): LPAR2 (ENSG00000064547), CNR1 (ENSG00000118432), MC3R (ENSG00000124089), S1PR4 (ENSG00000125910), GPR6 (ENSG00000146360), GPR119 (ENSG00000147262), MC4R (ENSG00000166603), S1PR1 (ENSG00000170989), LPAR3 (ENSG00000171517), MC5R (ENSG00000176136), S1PR5 (ENSG00000180739), GPR3 (ENSG00000181773), MC2R (ENSG00000185231), CNR2 (ENSG00000188822), LPAR1 (ENSG00000198121), S1PR3 (ENSG00000213694), MC1R (ENSG00000258839), S1PR2 (ENSG00000267534)
Protein
Protein identifiers
G-protein coupled receptor 12 — P47775 (reviewed: P47775)
All UniProt accessions (2): A8K2F5, P47775
UniProt curated annotations — full annotation on UniProt →
Function. Brain-specific G protein-coupled receptor involved in regulating diverse physiological processes including neurite outgrowth, meiotic arrest, and lipid and carbohydrate metabolism. Functions as a receptor with constitutive G(s)-mediated signaling activity that stimulates cyclic AMP (cAMP) production. Also engages the G(i)/G(o) pathway, which counteracts the cAMP increase driven by G(s) activation. Additionally, two lipids sphingosylphosphorylcholine (SPC) and sphingosine-1-phosphate (S1P) may act as endogenous ligand and activate GPR12.
Subunit / interactions. Interacts with GNAS.
Subcellular location. Cell membrane.
Similarity. Belongs to the G-protein coupled receptor 1 family.
RefSeq proteins (1): NP_005279* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000276 | GPCR_Rhodpsn | Family |
| IPR000599 | GPR12 | Family |
| IPR000723 | GPR_3/6/12_orphan | Family |
| IPR017452 | GPCR_Rhodpsn_7TM | Domain |
Pfam: PF00001
UniProt features (42 total): helix 13, topological domain 8, transmembrane region 7, mutagenesis site 4, modified residue 2, glycosylation site 2, strand 2, chain 1, lipid moiety-binding region 1, disulfide bond 1, turn 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7Y3G | ELECTRON MICROSCOPY | 2.77 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P47775-F1 | 84.37 | 0.60 |
Antibody-complex structures (SAbDab): 1 — 7Y3G
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 330, 332, 317
Disulfide bonds (1): 181–188
Glycosylation sites (2): 8, 24
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 47 | greatly decreased constitutive activity of gpr12. |
| 181 | greatly decreased constitutive activity of gpr12. |
| 188 | greatly decreased constitutive activity of gpr12. |
| 284 | greatly decreased constitutive activity of gpr12. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 128 (showing top):
FXR_IR1_Q6, BENPORATH_ES_WITH_H3K27ME3, XU_GH1_AUTOCRINE_TARGETS_UP, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, SANSOM_APC_TARGETS_DN, GOBP_MONOATOMIC_ION_HOMEOSTASIS, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, JACKSON_DNMT1_TARGETS_UP, AP2_Q6_01, NKX3A_01, SHEN_SMARCA2_TARGETS_DN, GOBP_HOMEOSTATIC_PROCESS, GOBP_CHEMICAL_HOMEOSTASIS, GOBP_ADENYLATE_CYCLASE_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY
GO Biological Process (4): intracellular calcium ion homeostasis (GO:0006874), G protein-coupled receptor signaling pathway (GO:0007186), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), signal transduction (GO:0007165)
GO Molecular Function (2): G protein-coupled receptor activity (GO:0004930), phosphatidylcholine binding (GO:0031210)
GO Cellular Component (3): cytoplasm (GO:0005737), plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| adenylate cyclase-modulating G protein-coupled receptor signaling pathway | 1 |
| adenylate cyclase activator activity | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| transmembrane signaling receptor activity | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| phospholipid binding | 1 |
| cation binding | 1 |
| quaternary ammonium group binding | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
638 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPR12 | GPR55 | Q9Y2T6 | 690 |
| GPR12 | GPR18 | Q14330 | 658 |
| GPR12 | LRRC61 | Q9BV99 | 528 |
| GPR12 | TRPV2 | Q9Y5S1 | 486 |
| GPR12 | TRPM8 | Q7Z2W7 | 470 |
| GPR12 | GPR4 | P46093 | 466 |
| GPR12 | GPR31 | O00270 | 464 |
| GPR12 | TRPV3 | Q8NET8 | 434 |
| GPR12 | GPR139 | Q6DWJ6 | 428 |
| GPR12 | TRPA1 | O75762 | 426 |
| GPR12 | PDE3A | Q14432 | 424 |
| GPR12 | TRPV1 | Q8NER1 | 409 |
| GPR12 | GPR35 | Q9HC97 | 402 |
| GPR12 | GPR21 | Q99679 | 390 |
| GPR12 | GPR22 | Q99680 | 379 |
| GPR12 | ALDH18A1 | P54886 | 379 |
IntAct
130 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PPP1CA | GPR12 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | PDZD2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PATJ | GPR12 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | DLG3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | SYNJ2BP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | APBA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MPDZ | GPR12 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | TIAM2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | PICK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | DLG4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | APBA3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | MPP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | PDZRN4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | LDB3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | SNX27 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | GOPC | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | ARHGAP21 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | NHERF2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | SNTG1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | SNTG2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | RHPN1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | FRMPD4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | AHNAK | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR12 | IL16 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (93): ABCD1 (Affinity Capture-MS), SLC7A2 (Affinity Capture-MS), SLC16A13 (Affinity Capture-MS), TAP1 (Affinity Capture-MS), SLC35G2 (Affinity Capture-MS), MFSD9 (Affinity Capture-MS), CDC6 (Affinity Capture-MS), TFB2M (Affinity Capture-MS), PANX1 (Affinity Capture-MS), BTAF1 (Affinity Capture-MS), SLC29A1 (Affinity Capture-MS), SURF1 (Affinity Capture-MS), DGAT1 (Affinity Capture-MS), SLC2A12 (Affinity Capture-MS), PARL (Affinity Capture-MS)
ESM2 similar proteins: A5A4K9, A5A4L1, O02667, O08725, P0DMS8, P11616, P25099, P28190, P28647, P30542, P30731, P32304, P32305, P34970, P35342, P47745, P47775, P49892, P50407, P60893, P60894, P60895, Q0VC81, Q28309, Q5E9H8, Q5QD04, Q5RBG7, Q5RF57, Q60612, Q61618, Q6PI62, Q8BZA7, Q8VHD7, Q91559, Q923X8, Q923Y1, Q923Y2, Q923Y6, Q92847, Q95254
Diamond homologs: B0V1P1, O02777, O08530, O19037, O77616, O95136, O95977, P21453, P32244, P33033, P35413, P41968, P46089, P46095, P46628, P47752, P47775, P47798, P48303, P51651, P52592, P55167, P56442, P56443, P56444, P56445, P56446, P56447, P56448, P61793, P61794, Q01727, Q28031, Q29154, Q5E9P3, Q684M3, Q6A155, Q6YNI2, Q80SS9, Q80SZ5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 83 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Assembly and cell surface presentation of NMDA receptors | 8 | 36.9× | 3e-09 |
| Neurexins and neuroligins | 9 | 32.2× | 1e-09 |
| Protein-protein interactions at synapses | 6 | 29.0× | 3e-06 |
| RHOA GTPase cycle | 5 | 6.8× | 7e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 9 | 65.4× | 4e-12 |
| protein localization to synapse | 5 | 47.9× | 6e-06 |
| receptor clustering | 6 | 46.8× | 7e-07 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 5 | 31.0× | 4e-05 |
| protein-containing complex assembly | 9 | 12.8× | 6e-06 |
| cell-cell adhesion | 9 | 11.4× | 8e-06 |
| protein localization to plasma membrane | 8 | 10.9× | 5e-05 |
| regulation of small GTPase mediated signal transduction | 5 | 9.0× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
36 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 31 |
| Likely benign | 0 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
321 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:26760616:T:TA | donor_gain | 0.9800 |
| 13:26760607:T:TA | donor_gain | 0.9500 |
| 13:26758675:T:C | donor_gain | 0.9400 |
| 13:26758670:A:C | donor_gain | 0.9300 |
| 13:26760573:GGTCA:G | donor_loss | 0.9300 |
| 13:26760574:GTCA:G | donor_loss | 0.9300 |
| 13:26760575:TCA:T | donor_loss | 0.9300 |
| 13:26760576:CA:C | donor_loss | 0.9300 |
| 13:26760577:A:AT | donor_loss | 0.9300 |
| 13:26760578:C:CG | donor_loss | 0.9300 |
| 13:26760587:G:A | donor_gain | 0.9200 |
| 13:26759843:C:G | acceptor_gain | 0.9100 |
| 13:26759843:C:CC | acceptor_gain | 0.9000 |
| 13:26759839:TCCTC:T | acceptor_gain | 0.8900 |
| 13:26759838:GTCCT:G | acceptor_gain | 0.8800 |
| 13:26759841:CT:C | acceptor_gain | 0.8800 |
| 13:26759902:A:C | acceptor_gain | 0.8800 |
| 13:26760579:C:G | donor_loss | 0.8800 |
| 13:26759849:C:CT | acceptor_gain | 0.8700 |
| 13:26759840:CCTCT:C | acceptor_gain | 0.8500 |
| 13:26759841:CTCTT:C | acceptor_gain | 0.8500 |
| 13:26759839:TCCT:T | acceptor_gain | 0.8400 |
| 13:26759840:CCTC:C | acceptor_gain | 0.8400 |
| 13:26759439:C:CC | acceptor_gain | 0.8200 |
| 13:26759840:CCT:C | acceptor_gain | 0.8200 |
| 13:26759841:CTC:C | acceptor_gain | 0.8200 |
| 13:26759842:TCT:T | acceptor_gain | 0.8200 |
| 13:26759901:CA:C | acceptor_gain | 0.7900 |
| 13:26760580:T:C | donor_loss | 0.7800 |
| 13:26760604:T:TA | donor_gain | 0.7800 |
AlphaMissense
2148 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 13:26759573:G:C | S85R | 1.000 |
| 13:26759573:G:T | S85R | 1.000 |
| 13:26759575:T:G | S85R | 1.000 |
| 13:26759038:A:G | W264R | 0.999 |
| 13:26759038:A:T | W264R | 0.999 |
| 13:26759415:C:G | R138P | 0.999 |
| 13:26759438:G:C | S130R | 0.999 |
| 13:26759438:G:T | S130R | 0.999 |
| 13:26759440:T:G | S130R | 0.999 |
| 13:26759547:C:T | G94D | 0.999 |
| 13:26759548:C:G | G94R | 0.999 |
| 13:26759559:T:A | D90V | 0.999 |
| 13:26759559:T:C | D90G | 0.999 |
| 13:26759559:T:G | D90A | 0.999 |
| 13:26759642:A:C | N62K | 0.999 |
| 13:26759642:A:T | N62K | 0.999 |
| 13:26759664:C:T | G55E | 0.999 |
| 13:26759665:C:G | G55R | 0.999 |
| 13:26759665:C:T | G55R | 0.999 |
| 13:26758929:A:T | I300K | 0.998 |
| 13:26758937:G:C | N297K | 0.998 |
| 13:26758937:G:T | N297K | 0.998 |
| 13:26758959:G:T | A290D | 0.998 |
| 13:26759031:G:C | P266R | 0.998 |
| 13:26759048:A:C | F260L | 0.998 |
| 13:26759048:A:T | F260L | 0.998 |
| 13:26759050:A:G | F260L | 0.998 |
| 13:26759314:C:G | G172R | 0.998 |
| 13:26759314:C:T | G172R | 0.998 |
| 13:26759335:A:G | W165R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000391828 (13:26758392 A>G,T), RS1000655373 (13:26762066 C>A,G,T), RS1001138668 (13:26760317 C>G,T), RS1001179595 (13:26761826 G>A,C), RS1001573418 (13:26754986 G>A), RS1001698165 (13:26760935 G>A,T), RS1003114152 (13:26754802 G>T), RS1003514515 (13:26762536 A>G), RS1003578881 (13:26762308 A>T), RS1003701660 (13:26757854 A>AT), RS1003732638 (13:26757593 G>T), RS1004197874 (13:26755259 A>G), RS1004347306 (13:26757352 T>C), RS1004741136 (13:26756387 T>C), RS1005187082 (13:26761469 A>G)
Disease associations
OMIM: gene MIM:600752 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003817_11 | Mortality in sepsis | 1.000000e-06 |
| GCST006110_19 | Nose morphology | 5.000000e-06 |
| GCST010988_461 | Adult body size | 4.000000e-09 |
| GCST90027899_10 | Eosinophilic esophagitis | 3.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004352 | mortality |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5006 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — Class A Orphans with emerging pharmacology
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| sphingosylphosphorylcholine | Full agonist | 7.49 | pEC50 |
| sphingosine 1-phosphate | Full agonist | 6.97 | pEC50 |
CTD chemical–gene interactions
7 total (human), top 7 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| CGP 52608 | affects binding, increases reaction | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Nickel | decreases expression | 1 |
| Phthalic Acids | decreases methylation | 1 |
| Thiram | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Copper Sulfate | increases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 2 binding, 2 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4883402 | Binding | PRESTO-Tango GPCRome screening (GPR12) | Data for DCP probe UCSF924 |
| CHEMBL5366029 | Functional | Agonist activity at human GPR12 expressed in HEK293 cells assessed as increase in cAMP accumulation at 10 uM incubated for 30 mins by HTRF assay | The development of diphenyleneiodonium analogs as GPR3 agonists. — Bioorg Med Chem Lett |
Cellosaurus cell lines
1 cell lines: 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_KX24 | PathHunter CHO-K1 GPR12 beta-arrestin | Spontaneously immortalized cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): eosinophilic esophagitis