GPR158
gene geneOn this page
Also known as KIAA1136
Summary
GPR158 (G protein-coupled receptor 158, HGNC:23689) is a protein-coding gene on chromosome 10p12.1, encoding Metabotropic glycine receptor (Q5T848). Metabotropic receptor for glycine that controls synapse formation and function in the brain.
Enables G protein-coupled glycine receptor activity and enzyme activator activity. Involved in G protein-coupled receptor signaling pathway; protein localization to plasma membrane; and regulation of G protein-coupled receptor signaling pathway. Is active in plasma membrane.
Source: NCBI Gene 57512 — RefSeq curated summary.
At a glance
- GWAS associations: 13
- Clinical variants (ClinVar): 190 total
- Druggable target: yes
- MANE Select transcript:
NM_020752
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23689 |
| Approved symbol | GPR158 |
| Name | G protein-coupled receptor 158 |
| Location | 10p12.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1136 |
| Ensembl gene | ENSG00000151025 |
| Ensembl biotype | protein_coding |
| OMIM | 614573 |
| Entrez | 57512 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 2 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000376351, ENST00000482641, ENST00000490549, ENST00000650135
RefSeq mRNA: 1 — MANE Select: NM_020752
NM_020752
CCDS: CCDS31166
Canonical transcript exons
ENST00000376351 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001332774 | 25572649 | 25572887 |
| ENSE00001332780 | 25550976 | 25551085 |
| ENSE00001332787 | 25412250 | 25412473 |
| ENSE00001332792 | 25395911 | 25396013 |
| ENSE00001332803 | 25221052 | 25221157 |
| ENSE00001332808 | 25175001 | 25176322 |
| ENSE00001470266 | 25594292 | 25594397 |
| ENSE00001470269 | 25589007 | 25589145 |
| ENSE00003496521 | 25466651 | 25466719 |
| ENSE00003515384 | 25596643 | 25596789 |
| ENSE00003593581 | 25597772 | 25602229 |
Expression profiles
Bgee: expression breadth ubiquitous, 127 present calls, max score 99.01.
FANTOM5 (CAGE): breadth broad, TPM avg 2.7703 / max 184.2596, expressed in 391 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 104360 | 1.1188 | 191 |
| 104365 | 0.4721 | 114 |
| 104370 | 0.3344 | 151 |
| 104366 | 0.2732 | 96 |
| 104363 | 0.1621 | 74 |
| 205796 | 0.1488 | 93 |
| 104361 | 0.1292 | 75 |
| 104362 | 0.1072 | 56 |
| 104364 | 0.0246 | 17 |
Top tissues by expression
225 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 99.01 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 98.53 | gold quality |
| cerebellar vermis | UBERON:0004720 | 98.39 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.26 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 95.28 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 95.20 | gold quality |
| pons | UBERON:0000988 | 94.87 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 94.06 | gold quality |
| postcentral gyrus | UBERON:0002581 | 94.03 | gold quality |
| primary visual cortex | UBERON:0002436 | 93.03 | gold quality |
| parietal lobe | UBERON:0001872 | 93.02 | gold quality |
| cerebellum | UBERON:0002037 | 92.28 | gold quality |
| cerebellar cortex | UBERON:0002129 | 91.91 | gold quality |
| occipital lobe | UBERON:0002021 | 91.83 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 91.74 | gold quality |
| entorhinal cortex | UBERON:0002728 | 90.90 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 90.09 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 90.04 | gold quality |
| prefrontal cortex | UBERON:0000451 | 89.02 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 88.88 | gold quality |
| medulla oblongata | UBERON:0001896 | 88.04 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 87.60 | gold quality |
| frontal cortex | UBERON:0001870 | 87.31 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 86.93 | gold quality |
| putamen | UBERON:0001874 | 86.64 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 86.58 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 86.04 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 85.67 | gold quality |
| caudate nucleus | UBERON:0001873 | 85.40 | gold quality |
| neocortex | UBERON:0001950 | 85.39 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 60.54 |
| E-ANND-3 | yes | 4.55 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, TP63
miRNA regulators (miRDB)
238 targeting GPR158, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-12121 | 99.99 | 66.64 | 255 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
Literature-anchored findings (GeneRIF, showing 10)
- Mutation of the NLS abrogates GPR158-mediated enhancement of cell proliferation. (PMID:23451275)
- expression and functional role of orphan receptor GPR158 in prostate cancer growth and progression (PMID:25693195)
- Our results suggest that common ethnic-specific variation in GPR158 may influence energy expenditure (EE) in Pima Indians. rs11014566 nominally associated with measures of EE and adiposity, where the G allele associated with lower 24-h EE, lower Resting Metabolic Rate, higher BMI, and higher percent body fat. But, the association of rs11014566 with BMI did not directionally replicate when assessed in other ethnic groups. (PMID:28476931)
- GPR158 is highly upregulated in the prefrontal cortex of human subjects with major depressive disorder. Exposure of mice to chronic stress also increased GPR158 protein levels in the prefrontal cortex in a glucocorticoid-dependent manner. (PMID:29419376)
- It findings implicate GPR158 as a homeostatic regulator of intraocular pressure and suggest GPR158 could be a pharmacological target for managing ocular hypertension. (PMID:30855200)
- Data observed that GPR158 interacted with and stabilized the amount of RGS7-beta5 through a 50-residue region downstream of its transmembrane domain and upstream of the VCPWE motifs. Also, two VCPWE motifs are involved in alphao binding. (PMID:31189666)
- Elevated GPR158 expression patterns in mucinous ovarian carcinoma patients with unfavorable overall survival. (PMID:31533654)
- Cryo-EM structure of human GPR158 receptor coupled to the RGS7-Gbeta5 signaling complex. (PMID:34793198)
- Structure of the class C orphan GPCR GPR158 in complex with RGS7-Gbeta5. (PMID:34815401)
- Orphan receptor GPR158 serves as a metabotropic glycine receptor: mGlyR. (PMID:36996198)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gpr158a | ENSDARG00000077134 |
| danio_rerio | gpr158b | ENSDARG00000079665 |
| mus_musculus | Gpr158 | ENSMUSG00000045967 |
| rattus_norvegicus | Gpr158 | ENSRNOG00000024832 |
Paralogs (1): GPR179 (ENSG00000277399)
Protein
Protein identifiers
Metabotropic glycine receptor — Q5T848 (reviewed: Q5T848)
Alternative names: G-protein coupled receptor 158
All UniProt accessions (2): Q5T848, A0A3B3IUC3
UniProt curated annotations — full annotation on UniProt →
Function. Metabotropic receptor for glycine that controls synapse formation and function in the brain. Acts as an atypical G-protein coupled receptor that recruits and regulates the RGS7-GNB5 complex instead of activating G proteins. In absence of glycine ligand, promotes the GTPase activator activity of RGS7, increasing the GTPase activity of G protein alpha subunits, thereby driving them into their inactive GDP-bound form. Glycine-binding changes the conformation of the intracellular surface, inhibiting the GTPase activator activity of the RGS7-GNB5 complex, promoting G protein alpha subunits into their active GTP-bound form and regulating cAMP levels. Also able to bind taurine, a compound closely related to glycine, but with a two-fold lower affinity. Glycine receptor-dependent regulation of cAMP controls key ion channels, kinases and neurotrophic factors involved in neuronal excitability and synaptic transmission. Plays a pivotal role in regulating mood and cognition via its ability to regulate neuronal excitability in L2/L3 pyramidal neurons of the prefrontal cortex. Also involved in spatial learning by regulating hippocampal CA1 neuronal excitability. Acts as a synaptic organizer in the hippocampus, required for proper mossy fiber-CA3 neurocircuitry establishment, structure and function: induces presynaptic differentiation in contacting axons via its interaction with GPC4. In addition to glycine, may also act as a receptor for osteocalcin (BGLAP) hormone: osteocalcin-binding initiates a signaling response that prevents neuronal apoptosis in the hippocampus and regulates the synthesis of neurotransmitters.
Subunit / interactions. Homodimer. Associates with the RGS7-GNB5 complex, promoting its localization to the cell membrane and regulating its GTPase activator activity. Interacts (via VCPWE motifs) with GNAO1. Interacts with GPC4. Interacts with EGFLAM.
Subcellular location. Cell membrane. Postsynaptic cell membrane. Presynaptic cell membrane. Nucleus.
Domain organisation. The Cache-like region shares similarity with the Cache domain, a well-known receptor for amino acids. It acts as a ligand-binding module that recognizes and binds glycine and taurine.
Similarity. Belongs to the G-protein coupled receptor 3 family.
RefSeq proteins (1): NP_065803* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR017978 | GPCR_3_C | Domain |
| IPR043458 | GPR158/179 | Family |
| IPR054714 | GPR158_179_extracellular | Domain |
Pfam: PF00003, PF22572
UniProt features (117 total): helix 21, strand 17, mutagenesis site 16, turn 10, topological domain 8, compositionally biased region 8, transmembrane region 7, modified residue 6, glycosylation site 5, region of interest 4, binding site 4, short sequence motif 3, disulfide bond 2, sequence variant 2, signal peptide 1, chain 1, cross-link 1, sequence conflict 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7SHE | ELECTRON MICROSCOPY | 3.4 |
| 7SHF | ELECTRON MICROSCOPY | 3.4 |
| 9VOR | ELECTRON MICROSCOPY | 3.47 |
| 7EWL | ELECTRON MICROSCOPY | 3.52 |
| 7EWP | ELECTRON MICROSCOPY | 4.3 |
| 7EWR | ELECTRON MICROSCOPY | 4.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5T848-F1 | 58.71 | 0.14 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 172; 173; 271; 307
Post-translational modifications (7): 694, 705, 708, 865, 946, 1080, 774
Disulfide bonds (2): 99–272, 481–573
Glycosylation sites (5): 98, 143, 215, 274, 333
Mutagenesis-validated functional residues (16):
| Position | Phenotype |
|---|---|
| 135 | does not affect ability to regulate camp levels; when associated with a-540 and a-578. |
| 173 | nearly abolished glycine-binding and ability to inhibit the gtpase activator activity of rgs7. |
| 266 | nearly abolished ability to inhibit the gtpase activator activity of rgs7 without affecting glycine-binding. |
| 269 | nearly abolished glycine-binding and ability to inhibit the gtpase activator activity of rgs7. |
| 271 | nearly abolished glycine-binding and ability to inhibit the gtpase activator activity of rgs7. |
| 502 | does not affect g protein alpha subunit activation. |
| 505 | does not affect g protein alpha subunit activation. |
| 540 | does not affect ability to regulate camp levels; when associated with a-135 and a-578. |
| 578 | does not affect ability to regulate camp levels; when associated with a-135 and a-540. |
| 609 | induces an increase of camp levels. |
| 719–720 | in m1 mutant; decreased localization to the nucleus. |
| 731–732 | in m2 mutant; decreased localization to the nucleus. |
| 1007–1009 | in mut1; decreased interaction with gnao1. |
| 1072–1074 | in mut2; does not affect interaction with gnao1. |
| 1172–1174 | in mut3; decreased interaction with gnao1. |
| 1172–1174 | in mut4; does not affect interaction with gnao1. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 210 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, GOBP_COGNITION, GCANCTGNY_MYOD_Q6, GOBP_NEUROTRANSMITTER_TRANSPORT, CHX10_01, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_CELL_CELL_SIGNALING, GOBP_CELL_JUNCTION_ORGANIZATION, NF1_Q6_01, GGARNTKYCCA_UNKNOWN, GOBP_REGULATION_OF_NEUROTRANSMITTER_TRANSPORT, GOBP_SECRETION, TGANTCA_AP1_C, GOBP_POSITIVE_REGULATION_OF_NEUROTRANSMITTER_SECRETION
GO Biological Process (9): positive regulation of neurotransmitter secretion (GO:0001956), G protein-coupled receptor signaling pathway (GO:0007186), brain development (GO:0007420), regulation of G protein-coupled receptor signaling pathway (GO:0008277), regulation of synapse organization (GO:0050807), cognition (GO:0050890), protein localization to plasma membrane (GO:0072659), signal transduction (GO:0007165), negative regulation of G protein-coupled receptor signaling pathway (GO:0045744)
GO Molecular Function (4): transmembrane signaling receptor activity (GO:0004888), enzyme activator activity (GO:0008047), G protein-coupled glycine receptor activity (GO:0160079), G protein-coupled receptor activity (GO:0004930)
GO Cellular Component (9): nucleus (GO:0005634), plasma membrane (GO:0005886), presynaptic membrane (GO:0042734), postsynaptic membrane (GO:0045211), postsynaptic density membrane (GO:0098839), membrane (GO:0016020), cell projection (GO:0042995), neuron projection (GO:0043005), synapse (GO:0045202)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| G protein-coupled receptor signaling pathway | 3 |
| synaptic membrane | 2 |
| cellular anatomical structure | 2 |
| neurotransmitter secretion | 1 |
| regulation of neurotransmitter secretion | 1 |
| positive regulation of synaptic transmission | 1 |
| positive regulation of neurotransmitter transport | 1 |
| positive regulation of secretion by cell | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| central nervous system development | 1 |
| animal organ development | 1 |
| head development | 1 |
| regulation of signal transduction | 1 |
| regulation of synapse structure or activity | 1 |
| synapse organization | 1 |
| regulation of cellular component organization | 1 |
| nervous system process | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| regulation of G protein-coupled receptor signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| signaling receptor activity | 1 |
| catalytic activity | 1 |
| enzyme regulator activity | 1 |
| molecular function activator activity | 1 |
| G protein-coupled neurotransmitter receptor activity | 1 |
| transmembrane signaling receptor activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| presynapse | 1 |
| postsynapse | 1 |
| postsynaptic density | 1 |
| postsynaptic membrane | 1 |
Protein interactions and networks
STRING
1426 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPR158 | RGS7 | P49802 | 886 |
| GPR158 | GPRC6A | Q5T6X5 | 772 |
| GPR158 | BGLAP | P02818 | 756 |
| GPR158 | GNB5 | O14775 | 675 |
| GPR158 | GPR156 | Q8NFN8 | 667 |
| GPR158 | GPC4 | O75487 | 656 |
| GPR158 | GPR137 | Q96N19 | 624 |
| GPR158 | GPRC5B | Q9NZH0 | 564 |
| GPR158 | GNAQ | P50148 | 534 |
| GPR158 | GPRC5C | Q9NQ84 | 530 |
| GPR158 | GPR152 | Q8TDT2 | 525 |
| GPR158 | RGS11 | O94810 | 523 |
| GPR158 | GPR52 | Q9Y2T5 | 513 |
| GPR158 | GPR171 | O14626 | 501 |
| GPR158 | GPRC5A | Q8NFJ5 | 490 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MYC | psi-mi:“MI:0914”(association) | 0.350 | |
| PITX2 | GPR158 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (8): GPR158 (Affinity Capture-RNA), GPR158 (Proximity Label-MS), GPR158 (Affinity Capture-RNA), GPR158 (Protein-RNA), GPR158 (Co-crystal Structure), GPR158 (Cross-Linking-MS (XL-MS)), PGAM1 (Cross-Linking-MS (XL-MS)), GPR158 (Affinity Capture-MS)
ESM2 similar proteins: A0A1B0GU71, A6QPI4, B2RV13, D4A6L0, E1BBQ2, F1LQY6, G3UW36, O08856, P15382, P53801, P55199, P56182, Q08CB3, Q0VF94, Q148E1, Q17RQ9, Q2KJ58, Q32Q90, Q4R5F9, Q4V8A6, Q4VA36, Q5I0I4, Q5NVI6, Q5R8Q2, Q5T6X4, Q5T848, Q5XII8, Q68EN5, Q6P767, Q8C419, Q8CHT6, Q8R143, Q8R1T1, Q8TBN0, Q8VDV3, Q8WUX9, Q90YH8, Q91WM6, Q91ZP9, Q96IL0
Diamond homologs: D4A6L0, E1BBQ2, E9PY61, Q54L53, Q5T848, Q6PRD1, Q8C419, Q1ZXQ7, Q54LG8, Q54QG7, Q54SH7, Q54SH8, Q54SW3, Q55AP1, Q75JP4, Q75JT4, Q86HH3, E4S1L1, P0CL55
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
190 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 167 |
| Likely benign | 8 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3793 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:25221044:A:AG | acceptor_gain | 1.0000 |
| 10:25221045:T:G | acceptor_gain | 1.0000 |
| 10:25221048:CTA:C | acceptor_loss | 1.0000 |
| 10:25221050:A:AG | acceptor_gain | 1.0000 |
| 10:25221050:AG:A | acceptor_gain | 1.0000 |
| 10:25221050:AGG:A | acceptor_gain | 1.0000 |
| 10:25221050:AGGG:A | acceptor_gain | 1.0000 |
| 10:25221051:G:GA | acceptor_gain | 1.0000 |
| 10:25221051:GG:G | acceptor_gain | 1.0000 |
| 10:25221051:GGG:G | acceptor_gain | 1.0000 |
| 10:25221051:GGGG:G | acceptor_gain | 1.0000 |
| 10:25221051:GGGGT:G | acceptor_gain | 1.0000 |
| 10:25221154:AGAGG:A | donor_loss | 1.0000 |
| 10:25221155:GAG:G | donor_gain | 1.0000 |
| 10:25221155:GAGGT:G | donor_loss | 1.0000 |
| 10:25221156:AGGTA:A | donor_loss | 1.0000 |
| 10:25221157:GGT:G | donor_loss | 1.0000 |
| 10:25221158:G:GG | donor_gain | 1.0000 |
| 10:25221159:T:A | donor_loss | 1.0000 |
| 10:25395909:A:AG | acceptor_gain | 1.0000 |
| 10:25395910:G:GC | acceptor_gain | 1.0000 |
| 10:25395910:GT:G | acceptor_gain | 1.0000 |
| 10:25395910:GTGT:G | acceptor_gain | 1.0000 |
| 10:25396009:TCGGA:T | donor_gain | 1.0000 |
| 10:25396010:CGGA:C | donor_gain | 1.0000 |
| 10:25396011:GGA:G | donor_gain | 1.0000 |
| 10:25396011:GGAG:G | donor_gain | 1.0000 |
| 10:25396012:GA:G | donor_gain | 1.0000 |
| 10:25396012:GAG:G | donor_gain | 1.0000 |
| 10:25396013:AGTA:A | donor_loss | 1.0000 |
AlphaMissense
7935 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:25597779:T:C | L718P | 1.000 |
| 10:25597788:T:C | L721P | 1.000 |
| 10:25597800:T:C | L725P | 1.000 |
| 10:25221137:T:A | C330S | 0.999 |
| 10:25221138:G:C | C330S | 0.999 |
| 10:25572662:T:C | F510L | 0.999 |
| 10:25572664:T:A | F510L | 0.999 |
| 10:25572664:T:G | F510L | 0.999 |
| 10:25596739:A:C | S699R | 0.999 |
| 10:25596741:T:A | S699R | 0.999 |
| 10:25596741:T:G | S699R | 0.999 |
| 10:25596754:T:A | W704R | 0.999 |
| 10:25596754:T:C | W704R | 0.999 |
| 10:25597779:T:A | L718Q | 0.999 |
| 10:25597813:A:C | K729N | 0.999 |
| 10:25597813:A:T | K729N | 0.999 |
| 10:25597824:T:C | M733T | 0.999 |
| 10:25597837:C:A | N737K | 0.999 |
| 10:25597837:C:G | N737K | 0.999 |
| 10:25221101:T:A | C318S | 0.998 |
| 10:25221102:G:C | C318S | 0.998 |
| 10:25395911:T:A | C337S | 0.998 |
| 10:25395912:G:C | C337S | 0.998 |
| 10:25551027:T:A | W486R | 0.998 |
| 10:25551027:T:C | W486R | 0.998 |
| 10:25596788:G:C | R715P | 0.998 |
| 10:25597776:A:T | E717V | 0.998 |
| 10:25597788:T:A | L721H | 0.998 |
| 10:25597790:T:G | Y722D | 0.998 |
| 10:25597800:T:A | L725Q | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000000991 (10:25442104 A>T), RS1000014352 (10:25275767 T>A,C), RS1000017283 (10:25413074 A>G), RS1000028847 (10:25204648 G>A,T), RS1000037831 (10:25374112 C>A), RS1000040117 (10:25253002 G>A,T), RS1000056823 (10:25227158 G>A), RS1000060649 (10:25197973 T>A), RS1000061579 (10:25528622 TAA>T), RS1000062258 (10:25539418 T>G), RS1000092197 (10:25481376 A>G), RS1000093270 (10:25289860 G>C,T), RS1000093664 (10:25365669 A>C,G), RS1000095361 (10:25442402 A>G), RS1000118451 (10:25295648 C>A,T)
Disease associations
OMIM: gene MIM:614573 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001491_36 | Immune response to smallpox vaccine (IL-6) | 4.000000e-09 |
| GCST002284_26 | QRS duration in Tripanosoma cruzi seropositivity | 4.000000e-07 |
| GCST004524_8 | Energy expenditure (24h) | 7.000000e-06 |
| GCST005170_13 | Intraocular pressure | 5.000000e-08 |
| GCST005316_64 | Intelligence (MTAG) | 9.000000e-09 |
| GCST005351_12 | Carboplatin disposition in epthelial ovarian cancer | 6.000000e-06 |
| GCST005580_316 | Intraocular pressure | 5.000000e-09 |
| GCST005580_92 | Intraocular pressure | 5.000000e-11 |
| GCST006479_107 | Diverticular disease | 5.000000e-16 |
| GCST007631_3 | Hepatitis C (spontaneous viral clearance) | 2.000000e-07 |
| GCST008105_2 | Diverticular disease | 2.000000e-22 |
| GCST009254_8 | Cerebellum white matter volume | 2.000000e-06 |
| GCST90000654_30 | Central corneal thickness | 1.000000e-08 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004645 | response to vaccine |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0004337 | intelligence |
| EFO:0009959 | diverticular disease |
| EFO:0009785 | remission |
| EFO:0008320 | white matter volume measurement |
| EFO:0005213 | central corneal thickness |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523874 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — Class C Orphans
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 8 |
| Aflatoxin B1 | decreases methylation | 2 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol A | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, decreases methylation | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, decreases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Dihydrotestosterone | increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Cadmium Chloride | decreases expression, increases abundance | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4883425 | Binding | PRESTO-Tango GPCRome screening (GPR158) | Data for DCP probe UCSF924 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hepatitis C virus infection