GPR17
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Summary
GPR17 (G protein-coupled receptor 17, HGNC:4471) is a protein-coding gene on chromosome 2q14.3, encoding Uracil nucleotide/cysteinyl leukotriene receptor (Q13304). Dual specificity receptor for uracil nucleotides and cysteinyl leukotrienes (CysLTs).
Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within negative regulation of inflammatory response to antigenic stimulus. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Source: NCBI Gene 2840 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 70 total
- Druggable target: yes — 5 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001161417
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4471 |
| Approved symbol | GPR17 |
| Name | G protein-coupled receptor 17 |
| Location | 2q14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000144230 |
| Ensembl biotype | protein_coding |
| OMIM | 603071 |
| Entrez | 2840 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 6 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000272644, ENST00000393018, ENST00000423019, ENST00000486700, ENST00000496086, ENST00000544369, ENST00000957151
RefSeq mRNA: 4 — MANE Select: NM_001161417
NM_001161415, NM_001161416, NM_001161417, NM_005291
CCDS: CCDS2148, CCDS92862
Canonical transcript exons
ENST00000486700 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003694249 | 127650716 | 127652639 |
| ENSE00003921171 | 127646153 | 127646244 |
Expression profiles
Bgee: expression breadth ubiquitous, 182 present calls, max score 93.60.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 2.6557 / max 524.3901, expressed in 153 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 22447 | 1.6199 | 93 |
| 22445 | 0.4593 | 99 |
| 22443 | 0.3210 | 105 |
| 22446 | 0.1012 | 68 |
| 22444 | 0.0606 | 38 |
| 22448 | 0.0585 | 18 |
| 202380 | 0.0352 | 20 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 93.60 | gold quality |
| sural nerve | UBERON:0015488 | 92.14 | gold quality |
| mucosa of stomach | UBERON:0001199 | 90.26 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 89.52 | gold quality |
| amygdala | UBERON:0001876 | 87.69 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 87.31 | gold quality |
| lower esophagus | UBERON:0013473 | 87.27 | gold quality |
| tibial nerve | UBERON:0001323 | 87.11 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 86.72 | gold quality |
| right atrium auricular region | UBERON:0006631 | 86.47 | gold quality |
| body of uterus | UBERON:0009853 | 86.31 | gold quality |
| left coronary artery | UBERON:0001626 | 86.24 | gold quality |
| heart left ventricle | UBERON:0002084 | 85.18 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 85.09 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 85.03 | gold quality |
| thoracic aorta | UBERON:0001515 | 84.75 | gold quality |
| ascending aorta | UBERON:0001496 | 84.47 | gold quality |
| aorta | UBERON:0000947 | 84.04 | gold quality |
| popliteal artery | UBERON:0002250 | 83.94 | gold quality |
| tibial artery | UBERON:0007610 | 83.88 | gold quality |
| cardiac ventricle | UBERON:0002082 | 83.72 | gold quality |
| right lung | UBERON:0002167 | 83.57 | gold quality |
| cardiac atrium | UBERON:0002081 | 83.30 | gold quality |
| coronary artery | UBERON:0001621 | 83.12 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 83.05 | gold quality |
| left uterine tube | UBERON:0001303 | 82.93 | gold quality |
| temporal lobe | UBERON:0001871 | 82.49 | gold quality |
| caudate nucleus | UBERON:0001873 | 82.38 | gold quality |
| spinal cord | UBERON:0002240 | 82.14 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 81.51 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 2014.90 |
| E-GEOD-84465 | yes | 24.53 |
| E-ENAD-17 | no | 359.21 |
| E-HCAD-30 | no | 344.13 |
| E-ANND-3 | no | 1.63 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
71 targeting GPR17, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-4658 | 99.77 | 64.94 | 514 |
| HSA-MIR-6790-5P | 99.77 | 65.24 | 505 |
| HSA-MIR-6752-3P | 99.72 | 66.71 | 1587 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
Literature-anchored findings (GeneRIF, showing 26)
- GPR17, a Gi-coupled orphan receptor at intermediate phylogenetic position between P2Y and CysLT receptors, is specifically activated by both families of endogenous ligands. (PMID:16990797)
- Molecular dynamics simulations suggest that GPR17 nucleotide binding pocket is similar to that described for the other P2Y receptors, although only one of the 3 basic residues that have been typically involved in ligand recognition is conserved (Arg255). (PMID:18533035)
- long-GPR17 isoform is a functional receptor that is stimulated by both uracil nucleotides and cysteinyl leukotrienes (PMID:19625605)
- We present the first isoform-specific characterization of GPR17 and show that differences exist between the isoforms in expression pattern and pharmacological profile; the two human isoforms might serve tissue-specific functions (PMID:20148890)
- REVIEW: functional properties and in vivo biology (PMID:21261596)
- A functional cross-talk exists between cysteinyl-leukotriene and purinergic sites at GPR17; the latter have a hierarchy in producing desensitizing signals. (PMID:21531793)
- analysis of agonist-induced trafficking of native GPR17 in oligodendroglial cells (PMID:23288840)
- Data validate GPR17 as a target for neurorepair (PMID:23801362)
- Nucleotides, nucleotide sugars, and cysteinyl leukotrienes do not promote activation of GPR17 in five different cell lines, nor does GPR17 have signaling properties. (PMID:23908386)
- Data indicate that small molecule MDL29,951 activates human, mouse and rat orphan G protein-coupled receptor GPR17. (PMID:24150254)
- Low levels of GRK2/GRK5 causes a slow and not complete desensitization/down-regulation of GPR17. (PMID:24613411)
- GPR17 gene disruption does not alter food intake or glucose homeostasis in mice. (PMID:25624481)
- This review summarizes knowledge about role of GPR17 receptors in physiology and pathology of nervous system, with special attention to remyelination processes. (PMID:25807830)
- Results show a crucial role of SNX27 in modulating GPR17 levels by means of a post-translational mechanism and highlights the relationship between the trafficking of the receptor through the endomembrane system and oligodendrocyte differentiation; and provide novel evidence of impairment of GPR17 expression and oligodendrocyte maturation in a mouse model of Down syndrome that is characterized by SNX27 down-regulation. (PMID:27270750)
- uracil nucleotides and cysteinyl leukotrienes do not activate human, mouse, or rat GPR17 in various cellular backgrounds. (PMID:28254957)
- In silico and ex vivo validation experiments provided the deep understanding of ligand binding with GPR17 and the present findings reported here may lead to use these two compounds as a potential activator of GPR17 for therapeutic intervention. (PMID:28827203)
- GPR17 may mediate hypoxia injury in RGC-5 cells, while the knockdown of GPR17 can reduce the hypoxia injury (PMID:30693690)
- FLIM-FRET-Based Structural Characterization of a Class-A GPCR Dimer in the Cell Membrane. (PMID:32553728)
- Transcriptomic analysis of glioblastoma multiforme providing new insights into GPR17 signaling communication. (PMID:33140689)
- Microglial vesicles improve post-stroke recovery by preventing immune cell senescence and favoring oligodendrogenesis. (PMID:33309882)
- The Distribution of GPR17-Expressing Cells Correlates with White Matter Inflammation Status in Brain Tissues of Multiple Sclerosis Patients. (PMID:33925469)
- G-protein-coupled receptor GPR17 inhibits glioma development by increasing polycomb repressive complex 1-mediated ROS production. (PMID:34120140)
- Human GPR17 missense variants identified in metabolic disease patients have distinct downstream signaling profiles. (PMID:34144038)
- GPR17 signaling activation by CHBC agonist induced cell death via modulation of MAPK pathway in glioblastoma. (PMID:35016881)
- Insulin-like Growth Factor 1 Promotes Cell Proliferation by Downregulation of G-Protein-Coupled Receptor 17 Expression via PI3K/Akt/FoxO1 Signaling in SK-N-SH Cells. (PMID:35163437)
- Structural analysis of human G-protein-coupled receptor 17 ligand binding sites. (PMID:36791278)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gpr17 | ENSDARG00000062030 |
| mus_musculus | Gpr17 | ENSMUSG00000052229 |
| rattus_norvegicus | Gpr17 | ENSRNOG00000065480 |
Paralogs (16): P2RY10 (ENSG00000078589), GPR18 (ENSG00000125245), F2RL3 (ENSG00000127533), GPR55 (ENSG00000135898), LPAR6 (ENSG00000139679), GPR65 (ENSG00000140030), LPAR4 (ENSG00000147145), CYSLTR2 (ENSG00000152207), F2RL2 (ENSG00000164220), F2RL1 (ENSG00000164251), CYSLTR1 (ENSG00000173198), GPR4 (ENSG00000177464), GPR35 (ENSG00000178623), F2R (ENSG00000181104), P2RY8 (ENSG00000182162), GPR20 (ENSG00000204882)
Protein
Protein identifiers
Uracil nucleotide/cysteinyl leukotriene receptor — Q13304 (reviewed: Q13304)
Alternative names: G-protein coupled receptor 17, P2Y-like receptor, R12
All UniProt accessions (3): Q13304, C9JWY5, G4XH68
UniProt curated annotations — full annotation on UniProt →
Function. Dual specificity receptor for uracil nucleotides and cysteinyl leukotrienes (CysLTs). Signals through G(i) and inhibition of adenylyl cyclase. May mediate brain damage by nucleotides and CysLTs following ischemia.
Subcellular location. Cell membrane.
Tissue specificity. Expressed in brain, kidney, heart and umbilical vein endothelial cells. Highest level in brain.
Similarity. Belongs to the G-protein coupled receptor 1 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13304-1 | 1 | yes |
| Q13304-2 | 2 |
RefSeq proteins (4): NP_001154887, NP_001154888, NP_001154889, NP_005282 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000276 | GPCR_Rhodpsn | Family |
| IPR017452 | GPCR_Rhodpsn_7TM | Domain |
Pfam: PF00001
UniProt features (38 total): helix 12, topological domain 8, transmembrane region 7, glycosylation site 3, strand 2, chain 1, region of interest 1, disulfide bond 1, splice variant 1, sequence conflict 1, turn 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7Y89 | ELECTRON MICROSCOPY | 3.02 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13304-F1 | 80.73 | 0.50 |
Antibody-complex structures (SAbDab): 1 — 7Y89
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (1): 132–209
Glycosylation sites (3): 42, 204, 282
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-391906 | Leukotriene receptors |
| R-HSA-416476 | G alpha (q) signalling events |
| R-HSA-417957 | P2Y receptors |
| R-HSA-418594 | G alpha (i) signalling events |
MSigDB gene sets: 115 (showing top):
GOBP_REGULATION_OF_INFLAMMATORY_RESPONSE_TO_ANTIGENIC_STIMULUS, GOBP_INFLAMMATORY_RESPONSE, REACTOME_EICOSANOID_LIGAND_BINDING_RECEPTORS, GOBP_RESPONSE_TO_PEPTIDE, REACTOME_P2Y_RECEPTORS, GOBP_NEUROGENESIS, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, GOBP_REGULATION_OF_IMMUNE_RESPONSE, MODULE_289, GOBP_REGULATION_OF_RESPONSE_TO_STRESS, GOBP_NEGATIVE_REGULATION_OF_DEFENSE_RESPONSE, GOBP_NEGATIVE_REGULATION_OF_INFLAMMATORY_RESPONSE, GOBP_INFLAMMATORY_RESPONSE_TO_ANTIGENIC_STIMULUS, MODULE_88
GO Biological Process (5): negative regulation of inflammatory response to antigenic stimulus (GO:0002862), G protein-coupled receptor signaling pathway (GO:0007186), oligodendrocyte differentiation (GO:0048709), signal transduction (GO:0007165), chemokine-mediated signaling pathway (GO:0070098)
GO Molecular Function (4): G protein-coupled receptor activity (GO:0004930), chemokine receptor activity (GO:0004950), receptor serine/threonine kinase binding (GO:0033612), protein binding (GO:0005515)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| GPCR downstream signalling | 2 |
| Eicosanoid ligand-binding receptors | 1 |
| Nucleotide-like (purinergic) receptors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| G protein-coupled receptor signaling pathway | 2 |
| inflammatory response to antigenic stimulus | 1 |
| regulation of inflammatory response to antigenic stimulus | 1 |
| negative regulation of inflammatory response | 1 |
| negative regulation of immune response | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| central nervous system development | 1 |
| glial cell differentiation | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cytokine-mediated signaling pathway | 1 |
| cellular response to chemokine | 1 |
| transmembrane signaling receptor activity | 1 |
| G protein-coupled chemoattractant receptor activity | 1 |
| cytokine receptor activity | 1 |
| chemokine binding | 1 |
| chemokine-mediated signaling pathway | 1 |
| signaling receptor binding | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
868 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPR17 | ITGA4 | P13612 | 701 |
| GPR17 | GPR176 | Q14439 | 619 |
| GPR17 | LTC4S | Q16873 | 576 |
| GPR17 | P0DN79 | P0DN79 | 571 |
| GPR17 | OLIG2 | Q13516 | 555 |
| GPR17 | OLIG1 | Q8TAK6 | 555 |
| GPR17 | ITGAL | P20701 | 545 |
| GPR17 | P2RY12 | Q9H244 | 511 |
| GPR17 | SOX10 | P56693 | 493 |
| GPR17 | MYRF | Q9Y2G1 | 491 |
| GPR17 | OXGR1 | Q96P68 | 487 |
| GPR17 | SELL | P14151 | 475 |
| GPR17 | CNP | P09543 | 474 |
| GPR17 | BCAS1 | O75363 | 465 |
| GPR17 | GPR37 | O15354 | 456 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GPR17 | IPO8 | psi-mi:“MI:0914”(association) | 0.530 |
| PDZK1 | GPR17 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPR17 | GPR37 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GPR17 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| GPR17 | C1QTNF9B | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (280): ADRBK1 (Affinity Capture-Luminescence), GPR17 (Two-hybrid), FAM126A (Affinity Capture-MS), MUL1 (Affinity Capture-MS), ATP2A2 (Affinity Capture-MS), MFSD5 (Affinity Capture-MS), HOOK2 (Affinity Capture-MS), ATP12A (Affinity Capture-MS), ATM (Affinity Capture-MS), C19orf25 (Affinity Capture-MS), SLC38A9 (Affinity Capture-MS), XYLT2 (Affinity Capture-MS), CCDC132 (Affinity Capture-MS), TONSL (Affinity Capture-MS), USO1 (Affinity Capture-MS)
ESM2 similar proteins: A7YY44, B0UXR0, B5X337, E7FEL0, O00254, O08675, O14843, O15529, O15552, O46685, P25116, P26824, P30558, P34996, P46093, P47749, P47900, P48042, P49650, P49651, P49652, P50132, P55085, P55086, P56488, P59902, Q00991, Q09QM4, Q13304, Q15743, Q1JQB3, Q2HJA4, Q3UFD7, Q4KLH9, Q58D85, Q63645, Q76EI6, Q86VZ1, Q8BFQ3, Q8BLG2
Diamond homologs: A0A4W3GG95, A0A6I8PUB9, B2GV46, B5X337, D4A7K7, E7FEL0, E9QJ73, F8VQN3, O00270, O08726, O08858, O14842, O14843, O15529, O42179, O43603, O46685, O60755, O77408, O88410, O88626, O88634, O88853, P21109, P23944, P25024, P25025, P35344, P35383, P35414, P41231, P41232, P46092, P46093, P49652, P49682, P49683, P50132, P51675, P51679
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GPR17 | “up-regulates activity” | GNAI1 | binding |
| GPR17 | “up-regulates activity” | GNAI3 | binding |
| GPR17 | “up-regulates activity” | GNAO1 | binding |
| GPR17 | “up-regulates activity” | GNAQ | binding |
| “3-(2-Carboxyethyl)-4,6-dichloro-1H-indole-2-carboxylic acid” | “up-regulates activity” | GPR17 | “chemical activation” |
| GRK2 | “down-regulates activity” | GPR17 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
70 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 56 |
| Likely benign | 8 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1101 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:127654418:CCTCA:C | donor_loss | 1.0000 |
| 2:127654419:CTCA:C | donor_loss | 1.0000 |
| 2:127654420:TCACC:T | donor_loss | 1.0000 |
| 2:127654421:CA:C | donor_loss | 1.0000 |
| 2:127654540:CTCAC:C | acceptor_gain | 1.0000 |
| 2:127654541:TCAC:T | acceptor_gain | 1.0000 |
| 2:127654542:CAC:C | acceptor_gain | 1.0000 |
| 2:127654542:CACC:C | acceptor_gain | 1.0000 |
| 2:127654543:AC:A | acceptor_gain | 1.0000 |
| 2:127654543:ACCTG:A | acceptor_loss | 1.0000 |
| 2:127654544:CC:C | acceptor_gain | 1.0000 |
| 2:127654897:C:CC | acceptor_gain | 1.0000 |
| 2:127654909:C:CT | acceptor_gain | 1.0000 |
| 2:127646241:AGAGG:A | donor_loss | 0.9900 |
| 2:127646243:AGGTA:A | donor_loss | 0.9900 |
| 2:127646244:GGTAA:G | donor_loss | 0.9900 |
| 2:127646245:GTAAG:G | donor_loss | 0.9900 |
| 2:127646246:T:G | donor_loss | 0.9900 |
| 2:127650711:TCCA:T | acceptor_loss | 0.9900 |
| 2:127650712:CCA:C | acceptor_loss | 0.9900 |
| 2:127650713:CAG:C | acceptor_loss | 0.9900 |
| 2:127650714:A:AG | acceptor_gain | 0.9900 |
| 2:127650715:G:C | acceptor_loss | 0.9900 |
| 2:127650715:G:GG | acceptor_gain | 0.9900 |
| 2:127654791:T:TA | donor_gain | 0.9900 |
| 2:127654792:C:A | donor_gain | 0.9900 |
| 2:127654814:CTG:C | donor_gain | 0.9900 |
| 2:127654815:TGT:T | donor_gain | 0.9900 |
| 2:127654824:CCTTA:C | donor_loss | 0.9900 |
| 2:127654825:CTTAC:C | donor_loss | 0.9900 |
AlphaMissense
2190 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:127651026:G:C | W125C | 0.997 |
| 2:127651026:G:T | W125C | 0.997 |
| 2:127651111:A:C | S154R | 0.997 |
| 2:127651113:C:A | S154R | 0.997 |
| 2:127651113:C:G | S154R | 0.997 |
| 2:127651201:T:A | W184R | 0.995 |
| 2:127651201:T:C | W184R | 0.995 |
| 2:127651276:T:A | C209S | 0.995 |
| 2:127651277:G:C | C209S | 0.995 |
| 2:127651046:G:A | C132Y | 0.994 |
| 2:127651087:A:C | S146R | 0.994 |
| 2:127651089:C:A | S146R | 0.994 |
| 2:127651089:C:G | S146R | 0.994 |
| 2:127651276:T:C | C209R | 0.994 |
| 2:127651477:T:C | F276L | 0.994 |
| 2:127651479:C:A | F276L | 0.994 |
| 2:127651479:C:G | F276L | 0.994 |
| 2:127651045:T:A | C132S | 0.993 |
| 2:127651046:G:C | C132S | 0.993 |
| 2:127651336:T:C | F229L | 0.993 |
| 2:127651338:C:A | F229L | 0.993 |
| 2:127651338:C:G | F229L | 0.993 |
| 2:127651484:C:A | P278H | 0.993 |
| 2:127651484:C:G | P278R | 0.993 |
| 2:127651047:C:G | C132W | 0.992 |
| 2:127651277:G:A | C209Y | 0.992 |
| 2:127651278:C:G | C209W | 0.992 |
| 2:127651346:C:G | P232R | 0.992 |
| 2:127651045:T:C | C132R | 0.990 |
| 2:127651121:G:C | R157P | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000023950 (2:127652732 T>C), RS1000035540 (2:127647396 G>A,C), RS1000118169 (2:127652975 G>A), RS1000435329 (2:127644179 G>A), RS1000636411 (2:127646212 C>T), RS1000856810 (2:127647242 G>A), RS1001122135 (2:127651791 T>C), RS1001419979 (2:127649238 T>C), RS1001494475 (2:127649141 A>C), RS1001626774 (2:127644259 G>A), RS1002426061 (2:127648049 G>A,C), RS1002467748 (2:127645794 G>C), RS1002894079 (2:127645424 C>T), RS1002909780 (2:127647828 C>T), RS1003091814 (2:127650290 G>A)
Disease associations
OMIM: gene MIM:603071 | disease phenotypes: MIM:616827
GenCC curated gene-disease
Mondo (2): autosomal recessive limb-girdle muscular dystrophy type 2W (MONDO:0014788), primary ovarian failure (MONDO:0005387)
Orphanet (2): OBSOLETE: LIMS2-related myopathy (Orphanet:466801), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010916_8 | Proportion of activated microglia (inferior temporal cortex) | 3.000000e-06 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1075162 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
5 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 196,643 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1097279 | CANGRELOR TETRASODIUM | 4 | 108 |
| CHEMBL21333 | PRANLUKAST | 4 | 12,755 |
| CHEMBL6 | INDOMETHACIN | 4 | 156,366 |
| CHEMBL787 | MONTELUKAST | 4 | 26,700 |
| CHEMBL44793 | GAVESTINEL | 2 | 714 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — Mas1, BB3/Brs3, GPR17
Most potent curated ligand interactions (14 total), top 14:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| ASN02563583 | Agonist | 9.96 | pEC50 |
| ASN04885796 | Agonist | 9.96 | pEC50 |
| ASN06917370 | Agonist | 9.57 | pEC50 |
| UDP-glucose | Agonist | 9.52 | pEC50 |
| LTE4 | Agonist | 9.51 | pEC50 |
| LTC4 | Agonist | 9.48 | pEC50 |
| ASN04450772 | Agonist | 8.93 | pEC50 |
| cangrelor | Antagonist | 8.92 | pIC50 |
| UDP-galactose | Agonist | 8.92 | pEC50 |
| UDP | Agonist | 8.8 | pEC50 |
| ASN04421891 | Agonist | 8.44 | pEC50 |
| LTD4 | Agonist | 8.36 | pEC50 |
| ATP | Agonist | 7.43 | pEC50 |
| montelukast | Antagonist | 7.21 | pIC50 |
ChEMBL bioactivities
208 potent at pChembl≥5 of 227 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.44 | EC50 | 0.036 | nM | CHEMBL1097652 |
| 9.15 | IC50 | 0.7 | nM | CANGRELOR TETRASODIUM |
| 8.85 | EC50 | 1.4 | nM | CHEMBL1096742 |
| 8.77 | EC50 | 1.7 | nM | CHEMBL1098419 |
| 8.20 | EC50 | 6.31 | nM | CHEMBL31344 |
| 8.14 | IC50 | 7.244 | nM | CHEMBL6103168 |
| 8.10 | IC50 | 7.943 | nM | CHEMBL6150589 |
| 8.05 | Ki | 8.913 | nM | CHEMBL6102166 |
| 7.96 | EC50 | 11 | nM | CHEMBL1098083 |
| 7.87 | EC50 | 13.49 | nM | CHEMBL3132880 |
| 7.74 | IC50 | 18.2 | nM | CHEMBL6102339 |
| 7.71 | IC50 | 19.5 | nM | CHEMBL6102166 |
| 7.69 | EC50 | 20.42 | nM | CHEMBL295718 |
| 7.55 | EC50 | 27.9 | nM | CHEMBL4216761 |
| 7.49 | EC50 | 32.1 | nM | CHEMBL4205476 |
| 7.48 | IC50 | 33.11 | nM | CHEMBL6150589 |
| 7.40 | EC50 | 39.81 | nM | CHEMBL31344 |
| 7.38 | EC50 | 41.69 | nM | CHEMBL31344 |
| 7.35 | IC50 | 45 | nM | CHEMBL6165955 |
| 7.20 | IC50 | 63.1 | nM | CHEMBL6145657 |
| 7.17 | EC50 | 67 | nM | CHEMBL4215280 |
| 7.16 | IC50 | 69 | nM | CHEMBL6142632 |
| 7.10 | IC50 | 79.43 | nM | CHEMBL6102055 |
| 7.10 | IC50 | 79.43 | nM | CHEMBL6144714 |
| 7.10 | IC50 | 79.43 | nM | CHEMBL6103168 |
| 7.10 | IC50 | 79.43 | nM | CHEMBL6102339 |
| 7.08 | Ki | 83.18 | nM | CHEMBL6150589 |
| 7.07 | IC50 | 85 | nM | CHEMBL6143347 |
| 7.05 | IC50 | 89.13 | nM | CHEMBL6103168 |
| 7.05 | Ki | 89.13 | nM | CHEMBL6102339 |
| 7.00 | IC50 | 100 | nM | CHEMBL6102740 |
| 7.00 | IC50 | 100 | nM | CHEMBL6102166 |
| 7.00 | IC50 | 100 | nM | CHEMBL6150589 |
| 7.00 | IC50 | 99 | nM | CHEMBL6165919 |
| 6.99 | EC50 | 103 | nM | CHEMBL4203088 |
| 6.95 | IC50 | 112 | nM | CHEMBL1094109 |
| 6.94 | EC50 | 115 | nM | CHEMBL4206497 |
| 6.93 | EC50 | 117 | nM | CHEMBL4209219 |
| 6.90 | IC50 | 125.9 | nM | CHEMBL6078081 |
| 6.90 | IC50 | 125.9 | nM | CHEMBL6133052 |
| 6.90 | IC50 | 125.9 | nM | CHEMBL6149147 |
| 6.90 | IC50 | 125.9 | nM | CHEMBL6147862 |
| 6.90 | IC50 | 125.9 | nM | CHEMBL6102166 |
| 6.88 | IC50 | 131.8 | nM | CHEMBL6144714 |
| 6.86 | Ki | 138 | nM | CHEMBL6145658 |
| 6.80 | IC50 | 158.5 | nM | CHEMBL6145943 |
| 6.80 | IC50 | 158.5 | nM | CHEMBL6102152 |
| 6.79 | EC50 | 162.2 | nM | CHEMBL53914 |
| 6.79 | IC50 | 162.2 | nM | CHEMBL6133618 |
| 6.73 | EC50 | 186.2 | nM | CHEMBL3921330 |
PubChem BioAssay actives
62 with measured affinity, of 256 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [[(2R,3S,4R,5R)-5-[6-amino-2-(2-phenylethynyl)purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate;azane | 480270: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ec50 | <0.0001 | uM |
| tetrasodium;[dichloro(phosphonato)methyl]-[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(2-methylsulfanylethylamino)-2-(3,3,3-trifluoropropylsulfanyl)purin-9-yl]oxolan-2-yl]methoxy-oxidophosphoryl]oxyphosphinate | 480271: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of UDP-glucose-induced [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ic50 | 0.0007 | uM |
| azane;[[(2R,3S,4R,5R)-5-[6-(cyclopentylamino)purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 480270: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ec50 | 0.0014 | uM |
| azane;[[(2R,3S,4R,5R)-5-[6-chloro-4-(methylamino)imidazo[4,5-c]pyridin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 480270: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ec50 | 0.0017 | uM |
| azane;[[(2R,3S,4R,5R)-5-[2-chloro-6-(methylamino)purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 480270: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ec50 | 0.0110 | uM |
| 6-bromo-3-(2-carboxyethyl)-4-fluoro-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.0279 | uM |
| 3-(2-carboxyethyl)-4-fluoro-6-iodo-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.0321 | uM |
| 3-(2-carboxyethyl)-4-chloro-6-hexoxy-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.0670 | uM |
| 3-(2-carboxyethyl)-4-chloro-6-pentoxy-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.1030 | uM |
| azane;[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(methylamino)purin-9-yl]oxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate | 480271: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of UDP-glucose-induced [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ic50 | 0.1120 | uM |
| 3-(2-carboxyethyl)-6-hexoxy-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.1150 | uM |
| 3-(2-carboxyethyl)-4-chloro-6-octoxy-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.1170 | uM |
| 3-(2-carboxyethyl)-6-phenoxy-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.2700 | uM |
| 3-(2-carboxyethyl)-4-chloro-6-(4-fluorophenyl)-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.4230 | uM |
| azane;[(2R,3S,5R)-5-[6-(methylamino)purin-9-yl]-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate | 480271: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of UDP-glucose-induced [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ic50 | 0.5080 | uM |
| [(2R,3S,5R)-5-(6-amino-2-chloropurin-9-yl)-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate;azane | 480271: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of UDP-glucose-induced [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ic50 | 0.5820 | uM |
| 4-bromo-3-(2-carboxyethyl)-6-fluoro-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.6240 | uM |
| 3-(2-carboxyethyl)-6-phenyl-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 0.7310 | uM |
| azane;[(2R,3S,4R,5R)-3,4-dihydroxy-5-(5-iodo-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate | 480270: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ec50 | 0.9450 | uM |
| trisodium;[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl] phosphate | 480270: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | ec50 | 1.1400 | uM |
| 3-(2-carboxyethyl)-4,6-dichloro-1H-indole-2-carboxylic acid | 1137664: Displacement of [3H]PSB-12150 from human GPR17 expressed in CHO-K1 cell membranes after 60 mins by homologous competition binding assay in presence of pranlukast | ki | 1.2100 | uM |
| 3-(2-carboxy-1,1,2,2-tetratritioethyl)-4,6-dichloro-1H-indole-2-carboxylic acid | 1137659: Binding affinity to human GPR17 expressed in CHO-K1 cell membranes after 60 mins by saturation curve study | kd | 1.2560 | uM |
| (3-nitrophenyl) 4-[(4-methylbenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 1.3300 | uM |
| 3-(2-carboxyethyl)-6-fluoro-4-iodo-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 1.4700 | uM |
| (3-cyanophenyl) 4-[(3-methylbenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 1.6000 | uM |
| 3-[(E)-3-anilino-3-oxoprop-1-enyl]-4,6-dichloro-1H-indole-2-carboxylic acid | 1137667: Displacement of [3H]PSB-12150 from human GPR17 expressed in CHO-K1 cell membranes after 60 mins by heterologous competition binding assay | ki | 1.6300 | uM |
| (3-nitrophenyl) 4-[(3-methoxybenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 1.6500 | uM |
| (3-nitrophenyl) 4-[(2-chlorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 1.6700 | uM |
| 3-(4,6-dichloro-1H-indol-3-yl)propanoic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 1.6800 | uM |
| (3-nitrophenyl) 4-[(3-methylbenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 1.9200 | uM |
| (3-nitrophenyl) 3-[(3-chlorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 2.3200 | uM |
| (3-nitrophenyl) 4-[(3-chlorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.0000 | uM |
| 3-(2-carboxyethyl)-7-fluoro-6-phenyl-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 3.0100 | uM |
| (3-nitrophenyl) 3-[(4-chlorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.0600 | uM |
| (3-nitrophenyl) 4-benzamidobenzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.2000 | uM |
| (3-nitrophenyl) 4-[(3,4-dichlorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.3300 | uM |
| (3-nitrophenyl) 4-[(4-chlorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.3700 | uM |
| (3-nitrophenyl) 3-[(3-fluorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.6100 | uM |
| 3-(2-carboxyethyl)-6-chloro-4-(4-fluorophenyl)-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 3.6800 | uM |
| 3-(2-carboxyethyl)-6-chloro-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 3.7200 | uM |
| (3-nitrophenyl) 4-[[3-(trifluoromethyl)benzoyl]amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 3.8800 | uM |
| 3-(2-carboxyethyl)-6-(4-fluorophenyl)-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 4.0200 | uM |
| N-[4-oxo-2-(2H-tetrazol-5-yl)chromen-8-yl]-4-(4-phenylbutoxy)benzamide | 1137667: Displacement of [3H]PSB-12150 from human GPR17 expressed in CHO-K1 cell membranes after 60 mins by heterologous competition binding assay | ki | 4.0600 | uM |
| methyl 3-[[3-[(3-methylbenzoyl)amino]phenyl]carbamoylamino]benzoate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 4.0700 | uM |
| 3-(2-carboxyethyl)-4,6-diphenyl-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 4.0900 | uM |
| 3-(2-carboxyethyl)-6-(furan-2-yl)-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 4.1300 | uM |
| (3-nitrophenyl) 4-[(3-bromobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 4.1800 | uM |
| (3-nitrophenyl) 4-[(3-fluorobenzoyl)amino]benzenesulfonate | 1716958: Antagonist activity at human GPR17 expressed in human 1321N1 cells assessed as inhibition of ATP-induced intracellular calcium influx preincubated for 20 mins followed by ATP addition measured at 0.4 secs interval for 60 times by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ic50 | 4.6200 | uM |
| 6-bromo-3-(2-carboxyethyl)-7-fluoro-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 4.8300 | uM |
| 6-benzyl-3-(2-carboxyethyl)-1H-indole-2-carboxylic acid | 1385395: Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of calcium mobilization after 1 hr by Oregon Green BAPTA-1/AM dye-based fluorescence assay | ec50 | 4.9800 | uM |
CTD chemical–gene interactions
16 total (human), top 16 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| ochratoxin A | increases expression | 2 |
| Resveratrol | affects cotreatment, increases expression, decreases expression | 2 |
| Esketamine | increases expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| enniatins | increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Copper | affects cotreatment, increases expression | 1 |
| Diazinon | decreases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Plant Extracts | decreases expression, affects cotreatment | 1 |
| Progesterone | affects cotreatment, decreases expression | 1 |
| Triclosan | decreases expression | 1 |
ChEMBL screening assays
78 unique, capped per target: 57 functional, 21 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1107397 | Functional | Agonist activity at human GPR17 expressed in human 1321N1 cells assessed as induction of [35S]GTPgammaS binding after 30 mins by rapid filtration assay | Frontal affinity chromatography-mass spectrometry useful for characterization of new ligands for GPR17 receptor. — J Med Chem |
| CHEMBL3269448 | Binding | Binding affinity to human GPR17 expressed in CHO-K1 cell membranes assessed per mg protein after 60 mins by saturation curve study | Development of [(3)H]2-Carboxy-4,6-dichloro-1H-indole-3-propionic Acid ([(3)H]PSB-12150): A Useful Tool for Studying GPR17. — ACS Med Chem Lett |
Cellosaurus cell lines
2 cell lines: 1 spontaneously immortalized cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_KU60 | CHO-K1 GPR17 Gq | Spontaneously immortalized cell line | Female |
| CVCL_LA41 | PathHunter U2OS GPR17 beta-arrestin | Cancer cell line | Female |
Clinical trials (associated diseases)
76 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT05989620 | Not specified | RECRUITING | Long-Term Development of Muscular Dystrophy Outcome Assessments |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
| NCT02043743 | PHASE1/PHASE2 | UNKNOWN | Autologous Stem Cells Transplantation in Patients With Idiopathic and Drug Induced Premature Ovarian Failure |
| NCT02062931 | PHASE1/PHASE2 | UNKNOWN | Autologous Mesenchymal Stem Cells Transplantation In Women With Premature Ovarian Failure |
| NCT02151890 | PHASE1/PHASE2 | COMPLETED | Pregnancy After Stem Cell Transplantation in Premature Ovarian Failure |
| NCT02372474 | PHASE1/PHASE2 | COMPLETED | It is a Real The First Baby Of Autologous Stem Cell Therapy in Premature Ovarian Failure |
| NCT02603744 | PHASE1/PHASE2 | UNKNOWN | Autologous Adipose Derived Mesenchymal Stromal Cells Transplantation in Women With Premature Ovarian Failure (POF) |
| NCT02644447 | PHASE1/PHASE2 | COMPLETED | Transplantation of HUC-MSCs With Injectable Collagen Scaffold for POF |
| NCT03069209 | PHASE1/PHASE2 | UNKNOWN | Autologous Bone Marrow-Derived Stem Cell Transplantation in Patients With Premature Ovarian Failure (POF) |
| NCT03985462 | PHASE1/PHASE2 | WITHDRAWN | Very Small Embryonic-like Stem Cells for Ovary |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT04071574 | PHASE1/PHASE2 | COMPLETED | Comparative Study on the Efficacy of Ovarian Stimulation Protocols on the Success Rate of ICSI in Female Infertility |
| NCT04922398 | PHASE1/PHASE2 | UNKNOWN | Ovarian Injection of PRP (Platelet -Rich Plasma) Vs Normal Saline in Premature Ovarian Insufficiency |
| NCT05462379 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Autologous Heterotopic Fresh Ovarian Graft in Woman With LACC Eligible for Pelvic Radiotherapy Treatment. |
| NCT06202547 | PHASE1/PHASE2 | UNKNOWN | Intra-ovarian Injection of MSC-EVs in Idiopathic Premature Ovarian Failure |
| NCT01129947 | EARLY_PHASE1 | WITHDRAWN | The Use of DHEA in Women With Premature Ovarian Failure |
| NCT05522634 | EARLY_PHASE1 | UNKNOWN | A Clinical Study of Chinese Herbal Compound TJAOA101 in the Treatment of Premature Ovarian Insufficiency |
| NCT07308327 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | The Influence of Gut Microbiota on Ovarian Function: A Single-center, Randomized,Double Blind, Parallel-controlled, Exploratory Clinical Trial |
| NCT00001275 | Not specified | COMPLETED | Ovarian Follicle Function in Patients With Primary Ovarian Failure |
| NCT00001306 | Not specified | COMPLETED | Steroid Therapy in Autoimmune Premature Ovarian Failure |
| NCT00006156 | Not specified | COMPLETED | Feasibility Study for Development of an Early Test for Ovarian Failure |
Related Atlas pages
- Targeted by drugs: Cangrelor, Galactose, Montelukast, Triphosphate
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive limb-girdle muscular dystrophy type 2W