GPR179
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Also known as CSNB1E
Summary
GPR179 (G protein-coupled receptor 179, HGNC:31371) is a protein-coding gene on chromosome 17q12, encoding Probable G-protein coupled receptor 179 (Q6PRD1). Orphan receptor involved in vision.
This gene encodes a member of the glutamate receptor subfamily of G protein-coupled receptors. The encoded protein has an EGF-like calcium binding domain and a seven transmembrane domain in the N-terminal region of the protein. Mutations in this gene are associated with congenital stationary night blindness type 1E.
Source: NCBI Gene 440435 — RefSeq curated summary.
At a glance
- Gene–disease (curated): GPR179-related retinopathy (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 1
- Clinical variants (ClinVar): 1,525 total — 29 pathogenic, 11 likely-pathogenic
- Phenotypes (HPO): 7
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001004334
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:31371 |
| Approved symbol | GPR179 |
| Name | G protein-coupled receptor 179 |
| Location | 17q12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CSNB1E |
| Ensembl gene | ENSG00000277399 |
| Ensembl biotype | protein_coding |
| OMIM | 614515 |
| Entrez | 440435 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 1 retained_intron, 1 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000610867, ENST00000616987, ENST00000622573
RefSeq mRNA: 1 — MANE Select: NM_001004334
NM_001004334
CCDS: CCDS42308
Canonical transcript exons
ENST00000610650 — 0 exons
Expression profiles
Bgee: expression breadth broad, 73 present calls, max score 79.65.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0185 / max 3.8135, expressed in 9 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 165495 | 0.0185 | 9 |
Top tissues by expression
105 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.65 | gold quality |
| prefrontal cortex | UBERON:0000451 | 69.02 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 67.93 | gold quality |
| frontal cortex | UBERON:0001870 | 65.47 | gold quality |
| sural nerve | UBERON:0015488 | 64.25 | gold quality |
| cortical plate | UBERON:0005343 | 63.87 | gold quality |
| primary visual cortex | UBERON:0002436 | 63.70 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 61.73 | gold quality |
| cerebral cortex | UBERON:0000956 | 60.72 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 60.66 | gold quality |
| hypothalamus | UBERON:0001898 | 60.30 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 60.23 | gold quality |
| right frontal lobe | UBERON:0002810 | 60.12 | gold quality |
| nucleus accumbens | UBERON:0001882 | 60.07 | gold quality |
| cerebellum | UBERON:0002037 | 59.87 | gold quality |
| cerebellar cortex | UBERON:0002129 | 59.76 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 59.70 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 59.39 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 59.38 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 58.18 | gold quality |
| caudate nucleus | UBERON:0001873 | 57.07 | gold quality |
| brain | UBERON:0000955 | 56.95 | gold quality |
| bone marrow cell | CL:0002092 | 55.55 | gold quality |
| gastrocnemius | UBERON:0001388 | 54.76 | gold quality |
| muscle of leg | UBERON:0001383 | 54.75 | gold quality |
| muscle tissue | UBERON:0002385 | 54.48 | gold quality |
| putamen | UBERON:0001874 | 54.13 | gold quality |
| ventricular zone | UBERON:0003053 | 53.23 | gold quality |
| ganglionic eminence | UBERON:0004023 | 52.91 | silver quality |
| colonic epithelium | UBERON:0000397 | 52.65 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.16 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
42 targeting GPR179, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-4422 | 99.72 | 72.07 | 2908 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-6132 | 99.60 | 65.83 | 1554 |
| HSA-MIR-6836-5P | 99.60 | 65.62 | 1538 |
| HSA-MIR-513C-5P | 99.50 | 68.42 | 1730 |
| HSA-MIR-514B-5P | 99.50 | 68.19 | 1766 |
| HSA-MIR-4728-3P | 99.47 | 68.94 | 981 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-6734-3P | 99.15 | 66.27 | 1627 |
| HSA-MIR-670-3P | 99.03 | 68.88 | 2404 |
| HSA-MIR-511-5P | 98.97 | 70.94 | 2268 |
| HSA-MIR-6876-3P | 98.97 | 65.69 | 765 |
| HSA-MIR-626 | 98.89 | 66.21 | 762 |
| HSA-MIR-3149 | 98.77 | 67.13 | 1639 |
| HSA-MIR-1183 | 98.75 | 67.10 | 1116 |
| HSA-MIR-198 | 98.70 | 67.32 | 920 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
| HSA-MIR-6735-5P | 98.24 | 65.36 | 1488 |
| HSA-MIR-7843-5P | 98.12 | 65.26 | 1421 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 5)
- Additional screening with Sanger sequencing of 40 patients identified three other cCSNB patients harboring additional allelic mutations in GPR179. (PMID:22325361)
- We found 1 mutation in GPR179 in congenital stationary night blindness. (PMID:23714322)
- In this study, a novel compound heterozygous mutation, c.[1A>G]; [608G>T] (p.[0?]; p.[W203L]), was identified in the LRIT3 gene of a proband. No mutations were identified in the CABP4 or GPR179 gene. (PMID:27428514)
- Authors identify that major components of the extracellular matrix proteins present in the synaptic cleft-members of the heparan sulfate proteoglycan (HSPG) family-associate with the GPR158/179 group of orphan receptors. (PMID:30282023)
- Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179. (PMID:37490546)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gpr179 | ENSDARG00000102310 |
| mus_musculus | Gpr179 | ENSMUSG00000070337 |
| rattus_norvegicus | Gpr179 | ENSRNOG00000085920 |
Paralogs (1): GPR158 (ENSG00000151025)
Protein
Protein identifiers
Probable G-protein coupled receptor 179 — Q6PRD1 (reviewed: Q6PRD1)
Alternative names: Probable G-protein coupled receptor 158-like 1
All UniProt accessions (1): A0A087X0K8
UniProt curated annotations — full annotation on UniProt →
Function. Orphan receptor involved in vision. Required for signal transduction through retinal depolarizing bipolar cells. Acts as an atypical G-protein coupled receptor that recruits and regulates the R7 group RGS-GNB5 complexes instead of activating G proteins: promotes the GTPase activator activity of R7 RGS proteins, increasing the GTPase activity of G protein alpha subunits, thereby driving them into their inactive GDP-bound form. Associates with components of metabotropic signaling cascade in retina ON-bipolar neurons, such as TRPM1 and GRM6: may control the ability of the GRM6 cascade to gate TRPM1.
Subunit / interactions. Homodimer. Associates with the R7 group RGS-GNB5 complexes, composed of an R7 group RGS subunit (RGS6, RGS7, RGS9 or RGS11) and GNB5, promoting their localization to the cell membrane and regulating the GTPase activator activity of R7 RGS proteins. Interacts with TRPM1. Interacts with GRM6. Interacts with EGFLAM; transsynaptic interaction is required for synaptic organization of photoreceptor cells.
Subcellular location. Cell membrane. Postsynaptic cell membrane. Cell projection. Dendrite.
Tissue specificity. Expressed in the retina.
Disease relevance. Night blindness, congenital stationary, 1E (CSNB1E) [MIM:614565] An autosomal recessive, non-progressive retinal disorder characterized by impaired night vision, absence of the electroretinogram (ERG) b-wave, and variable degrees of involvement of other visual functions. Affected individuals have an ERG waveform that lacks the b-wave because of failure to transmit the photoreceptor signal through the retinal depolarizing bipolar cells. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the G-protein coupled receptor 3 family.
RefSeq proteins (1): NP_001004334* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR017978 | GPCR_3_C | Domain |
| IPR043458 | GPR158/179 | Family |
| IPR054714 | GPR158_179_extracellular | Domain |
Pfam: PF00003, PF22572
UniProt features (88 total): compositionally biased region 16, helix 16, region of interest 13, strand 12, topological domain 8, sequence variant 8, transmembrane region 7, glycosylation site 2, disulfide bond 2, turn 2, signal peptide 1, chain 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8IRJ | ELECTRON MICROSCOPY | 3.49 |
| 8D1B | ELECTRON MICROSCOPY | 3.57 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6PRD1-F1 | 43.22 | 0.05 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (2): 76–236, 445–537
Glycosylation sites (2): 75, 298
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 68 (showing top):
GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_SENSORY_PERCEPTION_OF_LIGHT_STIMULUS, GOBP_SENSORY_PERCEPTION, GOCC_NEURON_PROJECTION, GOBP_LOCALIZATION_WITHIN_MEMBRANE, GOCC_POSTSYNAPSE, GOCC_SYNAPSE, GOCC_POSTSYNAPTIC_MEMBRANE, GOCC_PLASMA_MEMBRANE_REGION, GOCC_SOMATODENDRITIC_COMPARTMENT, GOCC_SYNAPTIC_MEMBRANE, GOMF_TRANSMEMBRANE_SIGNALING_RECEPTOR_ACTIVITY, CHEN_METABOLIC_SYNDROM_NETWORK, GOMF_G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY, GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY
GO Biological Process (5): visual perception (GO:0007601), protein localization to plasma membrane (GO:0072659), signal transduction (GO:0007165), G protein-coupled receptor signaling pathway (GO:0007186), response to light stimulus (GO:0009416)
GO Molecular Function (2): G protein-coupled receptor activity (GO:0004930), protein-membrane adaptor activity (GO:0043495)
GO Cellular Component (9): dendrite (GO:0030425), dendrite terminus (GO:0044292), postsynaptic membrane (GO:0045211), plasma membrane (GO:0005886), membrane (GO:0016020), cell projection (GO:0042995), neuron projection (GO:0043005), synapse (GO:0045202), cell tip (GO:0051286)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| sensory perception of light stimulus | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| response to radiation | 1 |
| transmembrane signaling receptor activity | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| protein-macromolecule adaptor activity | 1 |
| neuron projection | 1 |
| dendritic tree | 1 |
| dendrite | 1 |
| synaptic membrane | 1 |
| postsynapse | 1 |
| membrane | 1 |
| cell periphery | 1 |
| plasma membrane bounded cell projection | 1 |
| cell junction | 1 |
| cell pole | 1 |
Protein interactions and networks
STRING
933 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPR179 | NYX | Q9GZU5 | 819 |
| GPR179 | LRIT3 | Q3SXY7 | 774 |
| GPR179 | GRM6 | O15303 | 713 |
| GPR179 | CABP4 | P57796 | 695 |
| GPR179 | TRPM1 | Q7Z4N2 | 680 |
| GPR179 | RGS7 | P49802 | 661 |
| GPR179 | RGS11 | O94810 | 657 |
| GPR179 | EGFLAM | Q63HQ2 | 628 |
| GPR179 | CACNA1F | O60840 | 604 |
| GPR179 | SLC24A1 | O60721 | 571 |
| GPR179 | GNAT1 | P11488 | 507 |
| GPR179 | GNB5 | O14775 | 489 |
| GPR179 | PDE6B | P35913 | 479 |
| GPR179 | RGS9BP | Q6ZS82 | 477 |
| GPR179 | CACNA2D4 | Q7Z3S7 | 474 |
IntAct
21 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GPR179 | Egflam | psi-mi:“MI:0915”(physical association) | 0.560 |
| GPR179 | EGFLAM | psi-mi:“MI:0915”(physical association) | 0.460 |
| GPR179 | EGFLAM | psi-mi:“MI:0403”(colocalization) | 0.460 |
| GPR179 | HIST2H2BF | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPR179 | GPC5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPR179 | GPC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPR179 | SDC4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Egflam | Gpr179 | psi-mi:“MI:2364”(proximity) | 0.380 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| CTBP1 | TAF15 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (5): GPR179 (Affinity Capture-MS), GPR179 (Proximity Label-MS), GPR179 (Proximity Label-MS), GPR179 (Positive Genetic), GPR179 (Affinity Capture-MS)
ESM2 similar proteins: A0A0U1RR11, A0A0U1RRI6, A2APT9, A6NCS6, A6NJG2, B0BN44, D3YXK1, E9PY61, E9Q0B3, O00220, O00221, P09038, P0DPI3, P22083, P98077, Q08AU9, Q29RM6, Q2M2W7, Q2M3V2, Q2TBI2, Q5F267, Q5FW56, Q5IS69, Q5R866, Q5T4W7, Q5TM52, Q5U4P2, Q5VTJ3, Q659K9, Q69ZB3, Q6AYE8, Q6PJ61, Q6PRD1, Q7TSX9, Q7YR31, Q80SU3, Q86SH2, Q86Y97, Q8NBR0, Q8NCU7
Diamond homologs: D4A6L0, E1BBQ2, E9PY61, Q54L53, Q5T848, Q6PRD1, Q8C419
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1525 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 29 |
| Likely pathogenic | 11 |
| Uncertain significance | 887 |
| Likely benign | 426 |
| Benign | 60 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1389797 | NM_001004334.4(GPR179):c.839_842del (p.Asn280fs) | Pathogenic |
| 1451130 | NM_001004334.4(GPR179):c.857del (p.Pro286fs) | Pathogenic |
| 1452621 | NM_001004334.4(GPR179):c.724C>T (p.Arg242Ter) | Pathogenic |
| 1454474 | NM_001004334.4(GPR179):c.1368del (p.Phe456fs) | Pathogenic |
| 1705299 | NM_001004334.4(GPR179):c.1667G>A (p.Trp556Ter) | Pathogenic |
| 2054441 | NM_001004334.4(GPR179):c.416del (p.Glu139fs) | Pathogenic |
| 2085819 | NM_001004334.4(GPR179):c.1250del (p.Val417fs) | Pathogenic |
| 2087291 | NM_001004334.4(GPR179):c.9del (p.Arg4fs) | Pathogenic |
| 2102665 | NM_001004334.4(GPR179):c.357dup (p.Glu120Ter) | Pathogenic |
| 2104695 | NM_001004334.4(GPR179):c.416dup (p.Asp141fs) | Pathogenic |
| 2113803 | NM_001004334.4(GPR179):c.166del (p.Ala56fs) | Pathogenic |
| 2693218 | NM_001004334.4(GPR179):c.1706C>A (p.Ser569Ter) | Pathogenic |
| 2815606 | NM_001004334.4(GPR179):c.1005del (p.Ser335fs) | Pathogenic |
| 2827026 | NM_001004334.4(GPR179):c.1835_1836insTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCTCCTCCTCTTCTT (p.Phe613_His614insPhePhePhePhePheXaaXaaXaaXaaAspLeuValIleArgProProArgProProLysValLeuGlyLeuGlnAlaTerPhe) | Pathogenic |
| 286422 | NM_001004334.4(GPR179):c.647dup (p.Ala217fs) | Pathogenic |
| 2865751 | NM_001004334.4(GPR179):c.280dup (p.Ser94fs) | Pathogenic |
| 2876153 | NM_001004334.4(GPR179):c.595A>T (p.Lys199Ter) | Pathogenic |
| 287851 | NM_001004334.4(GPR179):c.673C>T (p.Gln225Ter) | Pathogenic |
| 3023225 | NM_001004334.4(GPR179):c.1000del (p.Glu334fs) | Pathogenic |
| 31200 | NM_001004334.4(GPR179):c.1807C>T (p.His603Tyr) | Pathogenic |
| 31201 | NM_001004334.4(GPR179):c.278del (p.Pro93fs) | Pathogenic |
| 31202 | NM_001004334.4(GPR179):c.598C>T (p.Arg200Ter) | Pathogenic |
| 31203 | NM_001004334.4(GPR179):c.1784+1G>A | Pathogenic |
| 31205 | NM_001004334.4(GPR179):c.187del (p.Leu63fs) | Pathogenic |
| 3604920 | NM_001004334.4(GPR179):c.268_269delinsTA (p.Gly90Ter) | Pathogenic |
| 3688188 | NM_001004334.4(GPR179):c.1874dup (p.Ile626fs) | Pathogenic |
| 441815 | GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) | Pathogenic |
| 598120 | NM_001004334.4(GPR179):c.1543C>T (p.Arg515Ter) | Pathogenic |
| 599074 | NM_001004334.4(GPR179):c.779_780dup (p.Pro262fs) | Pathogenic |
| 1324509 | NM_001004334.4(GPR179):c.148C>T (p.Gln50Ter) | Likely pathogenic |
SpliceAI
1756 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:38331541:A:T | acceptor_gain | 1.0000 |
| 17:38333408:C:CT | acceptor_gain | 1.0000 |
| 17:38333927:CCTCA:C | donor_loss | 1.0000 |
| 17:38333929:TCACC:T | donor_loss | 1.0000 |
| 17:38333930:CA:C | donor_loss | 1.0000 |
| 17:38333932:C:CA | donor_loss | 1.0000 |
| 17:38334034:CAAAC:C | acceptor_gain | 1.0000 |
| 17:38334036:AACC:A | acceptor_loss | 1.0000 |
| 17:38334038:CCT:C | acceptor_loss | 1.0000 |
| 17:38334039:CTG:C | acceptor_loss | 1.0000 |
| 17:38334040:T:A | acceptor_loss | 1.0000 |
| 17:38334698:CCTCA:C | donor_loss | 1.0000 |
| 17:38334699:CTCA:C | donor_loss | 1.0000 |
| 17:38334700:TCA:T | donor_loss | 1.0000 |
| 17:38334701:CACCT:C | donor_loss | 1.0000 |
| 17:38334703:C:A | donor_loss | 1.0000 |
| 17:38334703:CCTGG:C | donor_gain | 1.0000 |
| 17:38334838:CTCAG:C | acceptor_gain | 1.0000 |
| 17:38334839:TCAG:T | acceptor_gain | 1.0000 |
| 17:38334840:CAG:C | acceptor_gain | 1.0000 |
| 17:38334840:CAGC:C | acceptor_gain | 1.0000 |
| 17:38334841:AG:A | acceptor_gain | 1.0000 |
| 17:38334842:GC:G | acceptor_loss | 1.0000 |
| 17:38334843:C:CA | acceptor_loss | 1.0000 |
| 17:38334843:C:CC | acceptor_gain | 1.0000 |
| 17:38334845:G:C | acceptor_gain | 1.0000 |
| 17:38335027:GCTCA:G | donor_loss | 1.0000 |
| 17:38335028:CTCA:C | donor_loss | 1.0000 |
| 17:38335029:TCA:T | donor_loss | 1.0000 |
| 17:38335032:C:CG | donor_loss | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000236362 (17:38324401 C>T), RS1000250967 (17:38330813 C>A,T), RS1000397992 (17:38341261 C>A,T), RS1000654914 (17:38342373 G>A), RS1000754765 (17:38334354 C>T), RS1001096567 (17:38330445 C>A,T), RS1001212972 (17:38331648 T>A), RS1001414877 (17:38342659 A>C), RS1001434028 (17:38337531 C>T), RS1001463975 (17:38342240 T>C), RS1002215478 (17:38333016 G>A), RS1002420487 (17:38343925 G>A,T), RS1002551398 (17:38345159 C>G,T), RS1002765417 (17:38337480 C>G,T), RS1003110214 (17:38333070 T>C)
Disease associations
OMIM: gene MIM:614515 | disease phenotypes: MIM:614565, MIM:310500, MIM:268000, MIM:257270
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital stationary night blindness 1E | Definitive | Autosomal recessive |
| congenital stationary night blindness | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| GPR179-related retinopathy | Definitive | AR |
Mondo (7): congenital stationary night blindness 1E (MONDO:0013807), inherited retinal dystrophy (MONDO:0019118), optic atrophy (MONDO:0003608), congenital stationary night blindness (MONDO:0016293), retinitis pigmentosa (MONDO:0019200), congenital stationary night blindness 1B (MONDO:0009758), retinal disorder (MONDO:0005283)
Orphanet (3): Congenital stationary night blindness (Orphanet:215), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Retinitis pigmentosa (Orphanet:791)
HPO phenotypes
7 total (8 of 7 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000486 | Strabismus |
| HP:0000505 | Visual impairment |
| HP:0000639 | Nystagmus |
| HP:0007642 | Early-onset non-progressive night blindness |
| HP:0007663 | Reduced visual acuity |
| HP:0011003 | High myopia |
| HP:0000556 | Retinal dystrophy |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001941_16 | Ovarian cancer | 8.000000e-10 |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| C536122 | Night blindness, congenital stationary (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — Class C Orphans
CTD chemical–gene interactions
8 total (human), top 8 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases mutagenesis | 3 |
| aristolochic acid I | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | increases expression | 1 |
| Malathion | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
266 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT00100230 | PHASE2 | COMPLETED | DHA and X-Linked Retinitis Pigmentosa |
| NCT00447980 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Participants With Early Stage Retinitis Pigmentosa |
| NCT00447993 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Patients With Late Stage Retinitis Pigmentosa |
| NCT01233609 | PHASE2 | COMPLETED | Trial of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01399515 | PHASE2 | COMPLETED | Efficacy and Safety of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT01560715 | PHASE2 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
| NCT02609165 | PHASE2 | COMPLETED | Nerve Growth Factor Eye Drops Treatment in Patients With Retinitis Pigmentosa and Cystoid Macular Edema |
| NCT02661711 | PHASE2 | COMPLETED | Aflibercept for Macular Oedema With Underlying Retinitis Pigmentosa (AMOUR) Study |
| NCT02804360 | PHASE2 | UNKNOWN | Intravitreal Dexamethasone Implant in Retinitis Pigmentosa-related Macular Edema- a Retrospective Study |
| NCT02837640 | PHASE2 | UNKNOWN | Studying a Potential Protective Effect of L-Dopa on Retinitis Pigmentosa |
| NCT03073733 | PHASE2 | COMPLETED | Safety and Efficacy of Intravitreal Injection of Human Retinal Progenitor Cells in Adults With Retinitis Pigmentosa |
| NCT04356716 | PHASE2 | COMPLETED | Sildenafil for Treatment of Choroidal Ischemia |
| NCT04604899 | PHASE2 | COMPLETED | Safety of Repeat Intravitreal Injection of Human Retinal Progenitor Cells (jCell) in Adult Subjects With Retinitis Pigmentosa |
| NCT04763369 | PHASE2 | UNKNOWN | Investigation of Therapeutic Efficacy and Safety of UMSCs for the Management of Retinitis Pigmentosa (RP) |
| NCT04864496 | PHASE2 | UNKNOWN | Effects of Treatment With N- Acetylcysteine on Visual Outcomes in Patients With Retinitis Pigmentosa |
| NCT05085964 | PHASE2 | TERMINATED | An Open-Label Extension Study to Evaluate Safety & Tolerability of QR-421a in Subjects With Retinitis Pigmentosa |
| NCT05392179 | PHASE2 | COMPLETED | A Study in Subjects With Retinitis Pigmentosa |
| NCT06627179 | PHASE2 | RECRUITING | Study to Evaluate Ultevursen in Subjects With Retinitis Pigmentosa (RP) Due to Mutations in Exon 13 of the USH2A Gene |
| NCT06628947 | PHASE2 | RECRUITING | A Phase II Study of Intravitreal KIO-301 in Patients With Late-stage Retinitis Pigmentosa |
| NCT06912633 | PHASE2 | RECRUITING | Safety of a Single, Intravitreal Injection of 6.0M jCell (Famzeretcel) in Retinitis Pigmentosa (RP) |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
Related Atlas pages
- Associated diseases: congenital stationary night blindness 1E, congenital stationary night blindness, GPR179-related retinopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital stationary night blindness, congenital stationary night blindness 1B, congenital stationary night blindness 1E