GPR180
geneOn this page
Also known as ITR
Summary
GPR180 (G protein-coupled receptor 180, HGNC:28899) is a protein-coding gene on chromosome 13q32.1, encoding Integral membrane protein GPR180 (Q86V85).
This gene encodes a protein that is a member of the G protein-coupled receptor superfamily. This protein is produced predominantly in vascular smooth muscle cells and may play an important role in the regulation of vascular remodeling.
Source: NCBI Gene 160897 — RefSeq curated summary.
At a glance
- GWAS associations: 9
- Clinical variants (ClinVar): 62 total — 1 pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_180989
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28899 |
| Approved symbol | GPR180 |
| Name | G protein-coupled receptor 180 |
| Location | 13q32.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ITR |
| Ensembl gene | ENSG00000152749 |
| Ensembl biotype | protein_coding |
| OMIM | 607787 |
| Entrez | 160897 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000376958, ENST00000884206, ENST00000936762, ENST00000954032
RefSeq mRNA: 1 — MANE Select: NM_180989
NM_180989
CCDS: CCDS9472
Canonical transcript exons
ENST00000376958 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001006910 | 94619150 | 94619330 |
| ENSE00001101639 | 94621078 | 94621235 |
| ENSE00001101655 | 94623109 | 94623300 |
| ENSE00001101657 | 94605391 | 94605549 |
| ENSE00001101662 | 94625966 | 94626043 |
| ENSE00001248743 | 94619468 | 94619517 |
| ENSE00001295332 | 94612190 | 94612390 |
| ENSE00001472245 | 94627013 | 94634661 |
| ENSE00001472278 | 94601857 | 94602072 |
Expression profiles
Bgee: expression breadth ubiquitous, 216 present calls, max score 99.53.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.9681 / max 119.9135, expressed in 1771 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 135672 | 13.3309 | 1767 |
| 135671 | 0.6372 | 363 |
Top tissues by expression
243 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 99.53 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 91.14 | silver quality |
| oviduct epithelium | UBERON:0004804 | 87.53 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 83.75 | gold quality |
| endothelial cell | CL:0000115 | 81.73 | silver quality |
| tibia | UBERON:0000979 | 81.54 | gold quality |
| islet of Langerhans | UBERON:0000006 | 80.09 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 79.67 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 77.63 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 77.47 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 77.37 | gold quality |
| stromal cell of endometrium | CL:0002255 | 77.06 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 76.73 | gold quality |
| primary visual cortex | UBERON:0002436 | 76.42 | gold quality |
| calcaneal tendon | UBERON:0003701 | 75.37 | gold quality |
| ventricular zone | UBERON:0003053 | 74.55 | gold quality |
| pancreas | UBERON:0001264 | 74.27 | gold quality |
| pancreatic ductal cell | CL:0002079 | 73.96 | silver quality |
| prefrontal cortex | UBERON:0000451 | 73.80 | gold quality |
| parietal pleura | UBERON:0002400 | 73.78 | gold quality |
| ileal mucosa | UBERON:0000331 | 73.20 | gold quality |
| amniotic fluid | UBERON:0000173 | 72.99 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 72.92 | gold quality |
| adipose tissue | UBERON:0001013 | 72.42 | gold quality |
| cartilage tissue | UBERON:0002418 | 72.39 | gold quality |
| cerebellar cortex | UBERON:0002129 | 72.36 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 72.32 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 72.25 | gold quality |
| endometrium | UBERON:0001295 | 72.14 | gold quality |
| right lobe of liver | UBERON:0001114 | 72.10 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.03 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
329 targeting GPR180, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
Literature-anchored findings (GeneRIF, showing 5)
- 22 SNPs were isolated from the ITR locus by systematically screening genomic DNA from 48 healthy Japanese individuals (PMID:12730718)
- A null GPR180 mutation segregates over two generations with iridocorneal angle dysgenesis, consistent with the view that deletions of this gene are the cause of MCOR. (PMID:25772937)
- Microcoria due to first duplication of 13q32.1 including the GPR180 gene and maternal mosaicism. (PMID:32200002)
- GPR180 is a component of TGFbeta signalling that promotes thermogenic adipocyte function and mediates the metabolic effects of the adipocyte-secreted factor CTHRC1. (PMID:34880217)
- Lack of GPR180 ameliorates hepatic lipid depot via downregulation of mTORC1 signaling. (PMID:36726016)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | GPR180 | ENSDARG00000099851 |
| mus_musculus | Gpr180 | ENSMUSG00000022131 |
| rattus_norvegicus | Gpr180 | ENSRNOG00000009766 |
| drosophila_melanogaster | CG9304 | FBGN0034674 |
| caenorhabditis_elegans | WBGENE00011441 |
Paralogs (1): TMEM145 (ENSG00000167619)
Protein
Protein identifiers
Integral membrane protein GPR180 — Q86V85 (reviewed: Q86V85)
Alternative names: Intimal thickness-related receptor
All UniProt accessions (1): Q86V85
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Membrane.
RefSeq proteins (1): NP_851320* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR019336 | GPR180/TMEM145_TM | Domain |
| IPR047831 | GPR180/TMEM145 | Family |
| IPR053880 | GPR180-like_N | Domain |
Pfam: PF10192, PF21870
UniProt features (12 total): transmembrane region 7, glycosylation site 2, signal peptide 1, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86V85-F1 | 81.16 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (2): 110, 105
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 168 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_UP, GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GOBP_RESPONSE_TO_FOOD, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, CATTTCA_MIR203, GOBP_LIPID_METABOLIC_PROCESS, GOBP_FAT_CELL_DIFFERENTIATION, FISCHER_DREAM_TARGETS, CAAGGAT_MIR362, CTTTGTA_MIR524, IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR, XU_GH1_AUTOCRINE_TARGETS_DN, chr13q32, XU_GH1_EXOGENOUS_TARGETS_DN
GO Biological Process (7): generation of precursor metabolites and energy (GO:0006091), lipid metabolic process (GO:0006629), G protein-coupled receptor signaling pathway (GO:0007186), gene expression (GO:0010467), response to pheromone (GO:0019236), response to food (GO:0032094), fat cell differentiation (GO:0045444)
GO Molecular Function (0):
GO Cellular Component (1): membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| response to chemical | 2 |
| metabolic process | 1 |
| primary metabolic process | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| macromolecule biosynthetic process | 1 |
| response to nutrient levels | 1 |
| cell differentiation | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
338 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPR180 | TGDS | O95455 | 671 |
| GPR180 | RHO | P08100 | 530 |
| GPR180 | OCIAD2 | Q56VL3 | 448 |
| GPR180 | PARP6 | Q2NL67 | 418 |
| GPR180 | GPR107 | Q5VW38 | 388 |
| GPR180 | SOX21 | P35715 | 378 |
| GPR180 | ABCC4 | O15439 | 356 |
| GPR180 | GPRC5C | Q9NQ84 | 344 |
| GPR180 | GPR50 | Q13585 | 330 |
| GPR180 | SMIM13 | P0DJ93 | 325 |
| GPR180 | PPP1R12C | Q9BZL4 | 321 |
| GPR180 | RNF113B | Q8IZP6 | 320 |
| GPR180 | HS6ST3 | Q8IZP7 | 316 |
| GPR180 | GPR176 | Q14439 | 315 |
| GPR180 | GPR137B | O60478 | 301 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SGCA | GPR180 | psi-mi:“MI:0914”(association) | 0.530 |
| CD40 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM63A | AP3D1 | psi-mi:“MI:0914”(association) | 0.530 |
| CCR6 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| GPC1 | SNAP23 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPC1 | GANAB | psi-mi:“MI:0915”(physical association) | 0.400 |
| SGCA | ACP2 | psi-mi:“MI:0914”(association) | 0.350 |
| SPPL2B | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| FFAR1 | SLC12A8 | psi-mi:“MI:0914”(association) | 0.350 |
| OSBPL8 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ENTPD7 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| SGCA | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| ATP2A3 | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| SPPL2B | HAS3 | psi-mi:“MI:0914”(association) | 0.350 |
| P2RY1 | EI24 | psi-mi:“MI:0914”(association) | 0.350 |
| LPAR2 | EI24 | psi-mi:“MI:0914”(association) | 0.350 |
| TPST2 | NDC80 | psi-mi:“MI:0914”(association) | 0.350 |
| S1PR1 | TNPO2 | psi-mi:“MI:0914”(association) | 0.350 |
| FPR2 | SCAMP3 | psi-mi:“MI:0914”(association) | 0.350 |
| ENTPD2 | CLGN | psi-mi:“MI:0914”(association) | 0.350 |
| S1PR4 | NPC1 | psi-mi:“MI:0914”(association) | 0.350 |
| APLNR | TTI1 | psi-mi:“MI:0914”(association) | 0.350 |
| CCR9 | ABCC4 | psi-mi:“MI:0914”(association) | 0.350 |
| CD40 | IPO5 | psi-mi:“MI:0914”(association) | 0.350 |
| CXCR3 | RIMOC1 | psi-mi:“MI:0914”(association) | 0.350 |
| S1PR3 | STXBP3 | psi-mi:“MI:0914”(association) | 0.350 |
| MFSD5 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| SLC15A3 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (45): CLU (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Proximity Label-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS), GPR180 (Affinity Capture-MS)
ESM2 similar proteins: A0JPH4, A7MBC7, D3ZWZ9, F1M8G0, F1QFU0, F4JTN2, O14524, P0C152, P49653, Q08DA4, Q0IJ20, Q148L1, Q28EW0, Q3TPR7, Q4V8X0, Q5HYA8, Q5M7W4, Q5R9R1, Q5RDB4, Q5RH73, Q5U308, Q5VW38, Q5ZKN3, Q6AXF6, Q6P6V6, Q6Q3F5, Q6ZQE4, Q7L1W4, Q7ZYA0, Q86V85, Q8BGR2, Q8BKU8, Q8BPS4, Q8BR76, Q8BUV8, Q8BXN9, Q8CB19, Q8N3S3, Q8NBN3, Q8R4P4
Diamond homologs: Q5FWM8, Q86V85, Q8BPS4
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 63 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Lysosphingolipid and LPA receptors | 5 | 88.5× | 4e-07 |
| Class A/1 (Rhodopsin-like receptors) | 8 | 13.8× | 1e-05 |
| GPCR ligand binding | 8 | 11.9× | 2e-05 |
| G alpha (i) signalling events | 9 | 8.2× | 6e-05 |
| Signaling by GPCR | 8 | 7.5× | 4e-04 |
| GPCR downstream signalling | 7 | 7.1× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | 6 | 22.3× | 4e-05 |
| positive regulation of cytosolic calcium ion concentration | 9 | 17.9× | 8e-07 |
| transport across blood-brain barrier | 5 | 15.2× | 2e-03 |
| chemotaxis | 5 | 11.5× | 4e-03 |
| adenylate cyclase-activating G protein-coupled receptor signaling pathway | 6 | 11.5× | 2e-03 |
| phospholipase C-activating G protein-coupled receptor signaling pathway | 5 | 11.2× | 4e-03 |
| G protein-coupled receptor signaling pathway | 12 | 7.4× | 1e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
62 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 39 |
| Likely benign | 6 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 989396 | Single allele | Pathogenic |
SpliceAI
1659 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:94612307:TGG:T | donor_gain | 1.0000 |
| 13:94623107:A:AG | acceptor_gain | 1.0000 |
| 13:94623107:AGAGT:A | acceptor_gain | 1.0000 |
| 13:94623108:G:GG | acceptor_gain | 1.0000 |
| 13:94623108:GA:G | acceptor_gain | 1.0000 |
| 13:94623108:GAGT:G | acceptor_gain | 1.0000 |
| 13:94623108:GAGTG:G | acceptor_gain | 1.0000 |
| 13:94623260:G:GT | donor_gain | 1.0000 |
| 13:94623276:G:GT | donor_gain | 1.0000 |
| 13:94623276:G:T | donor_gain | 1.0000 |
| 13:94623277:G:T | donor_gain | 1.0000 |
| 13:94623301:G:GG | donor_gain | 1.0000 |
| 13:94623313:A:T | donor_gain | 1.0000 |
| 13:94625960:TTTCA:T | acceptor_loss | 1.0000 |
| 13:94625961:TTCA:T | acceptor_loss | 1.0000 |
| 13:94625962:TCA:T | acceptor_loss | 1.0000 |
| 13:94625963:CAG:C | acceptor_loss | 1.0000 |
| 13:94625964:A:AG | acceptor_gain | 1.0000 |
| 13:94625964:AG:A | acceptor_gain | 1.0000 |
| 13:94625964:AGG:A | acceptor_gain | 1.0000 |
| 13:94625965:G:A | acceptor_loss | 1.0000 |
| 13:94625965:G:GT | acceptor_gain | 1.0000 |
| 13:94625965:GG:G | acceptor_gain | 1.0000 |
| 13:94625965:GGG:G | acceptor_gain | 1.0000 |
| 13:94625965:GGGC:G | acceptor_gain | 1.0000 |
| 13:94625965:GGGCT:G | acceptor_gain | 1.0000 |
| 13:94626040:CAAGG:C | donor_loss | 1.0000 |
| 13:94626041:AAGGT:A | donor_loss | 1.0000 |
| 13:94626042:AGGTA:A | donor_loss | 1.0000 |
| 13:94626043:GGT:G | donor_loss | 1.0000 |
AlphaMissense
2899 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 13:94623280:T:C | F356L | 0.997 |
| 13:94623282:C:A | F356L | 0.997 |
| 13:94623282:C:G | F356L | 0.997 |
| 13:94627096:G:C | W416C | 0.995 |
| 13:94627096:G:T | W416C | 0.995 |
| 13:94625978:T:A | W367R | 0.993 |
| 13:94625978:T:C | W367R | 0.993 |
| 13:94627094:T:A | W416R | 0.993 |
| 13:94627094:T:C | W416R | 0.993 |
| 13:94627085:A:C | S413R | 0.991 |
| 13:94627087:T:A | S413R | 0.991 |
| 13:94627087:T:G | S413R | 0.991 |
| 13:94623262:A:C | S350R | 0.990 |
| 13:94623264:T:A | S350R | 0.990 |
| 13:94623264:T:G | S350R | 0.990 |
| 13:94623273:A:C | K353N | 0.989 |
| 13:94623273:A:T | K353N | 0.989 |
| 13:94623281:T:C | F356S | 0.989 |
| 13:94602066:T:C | F47L | 0.988 |
| 13:94602068:C:A | F47L | 0.988 |
| 13:94602068:C:G | F47L | 0.988 |
| 13:94625969:T:C | C364R | 0.988 |
| 13:94627103:T:C | S419P | 0.988 |
| 13:94621122:A:C | S261R | 0.987 |
| 13:94621124:T:A | S261R | 0.987 |
| 13:94621124:T:G | S261R | 0.987 |
| 13:94623109:A:C | S299R | 0.987 |
| 13:94623111:T:A | S299R | 0.987 |
| 13:94623111:T:G | S299R | 0.987 |
| 13:94627071:T:C | L408P | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000087597 (13:94634717 CT>C), RS1000087898 (13:94633134 A>G), RS1000282830 (13:94620997 AAAAG>A), RS1000521783 (13:94634348 A>G), RS1000743337 (13:94601877 C>A,G,T), RS1000819351 (13:94629815 T>C), RS1000948503 (13:94604339 T>A), RS1001147982 (13:94621281 G>A,T), RS1001251834 (13:94608136 A>G), RS1001343202 (13:94615893 G>C), RS1001358574 (13:94601289 T>A,C,G), RS1001417146 (13:94609528 G>T), RS1001419330 (13:94628713 G>C), RS1001590726 (13:94632679 T>C), RS1001626450 (13:94612578 G>A,C)
Disease associations
OMIM: gene MIM:607787 | disease phenotypes: MIM:156600
GenCC curated gene-disease
Mondo (1): congenital microcoria (MONDO:0007989)
Orphanet (1): Congenital microcoria (Orphanet:566)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003815_29 | Late-onset Alzheimer’s disease | 6.000000e-06 |
| GCST004237_21 | Triglyceride levels | 3.000000e-08 |
| GCST006016_25 | Serum alkaline phosphatase levels | 2.000000e-08 |
| GCST010173_123 | Triglyceride levels | 3.000000e-11 |
| GCST010241_299 | Apolipoprotein A1 levels | 1.000000e-08 |
| GCST010244_323 | Triglyceride levels | 2.000000e-14 |
| GCST011353_19 | Serum alkaline phosphatase levels | 7.000000e-14 |
| GCST012501_5 | Achilles tendon injury | 3.000000e-08 |
| GCST90011900_108 | Serum alkaline phosphatase levels | 2.000000e-52 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001870 | late-onset Alzheimers disease |
| EFO:0004530 | triglyceride measurement |
| EFO:0004533 | alkaline phosphatase measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0600078 | Achilles tendon injury |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C537550 | Microcoria, congenital (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066399 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.55 | Kd | 284.5 | nM | CHEMBL5653589 |
| 6.50 | ED50 | 317.4 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148456: Binding affinity to human GPR180 incubated for 45 mins by Kinobead based pull down assay | kd | 0.2845 | uM |
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| perfluorooctane sulfonic acid | increases expression, decreases expression | 2 |
| Benzo(a)pyrene | decreases expression, affects methylation | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| butyraldehyde | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | decreases expression, increases response to substance | 1 |
| jinfukang | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Demecolcine | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Naled | affects expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Vincristine | decreases expression | 1 |
| Aflatoxin B1 | decreases expression | 1 |
| Aflatoxin M1 | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651498 | Binding | Binding affinity to human GPR180 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital microcoria