GPRASP1
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Also known as GASPGASP1
Summary
GPRASP1 (G protein-coupled receptor associated sorting protein 1, HGNC:24834) is a protein-coding gene on chromosome Xq22.1, encoding G-protein coupled receptor-associated sorting protein 1 (Q5JY77). Modulates lysosomal sorting and functional down-regulation of a variety of G-protein coupled receptors.
This gene encodes a member of the GPRASP (G protein-coupled receptor associated sorting protein) family. The protein may modulate lysosomal sorting and functional down-regulation of a variety of G-protein coupled receptors. It targets receptors for degradation in lysosomes. The receptors interacting with this sorting protein include D2 dopamine receptor (DRD2), delta opioid receptor (OPRD1), beta-2 adrenergic receptor (ADRB2), D4 dopamine receptor (DRD4) and cannabinoid 1 receptor (CB1R). Multiple alternatively spliced transcript variants encoding the same protein have been identified.
Source: NCBI Gene 9737 — RefSeq curated summary.
At a glance
- Gene–disease (curated): arteriovenous hemangioma/malformation (Moderate, GenCC)
- Clinical variants (ClinVar): 7 total
- MANE Select transcript:
NM_001184727
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24834 |
| Approved symbol | GPRASP1 |
| Name | G protein-coupled receptor associated sorting protein 1 |
| Location | Xq22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GASP, GASP1 |
| Ensembl gene | ENSG00000198932 |
| Ensembl biotype | protein_coding |
| OMIM | 300417 |
| Entrez | 9737 |
Gene structure
Transcript identifiers
Ensembl transcripts: 31 — 30 protein_coding, 1 retained_intron
ENST00000361600, ENST00000415986, ENST00000444152, ENST00000466098, ENST00000537097, ENST00000652542, ENST00000892411, ENST00000892412, ENST00000892413, ENST00000892414, ENST00000892415, ENST00000892416, ENST00000892417, ENST00000892418, ENST00000892419, ENST00000892420, ENST00000892421, ENST00000931714, ENST00000931715, ENST00000942621, ENST00000942622, ENST00000942623, ENST00000942624, ENST00000942625, ENST00000942626, ENST00000942627, ENST00000942628, ENST00000942629, ENST00000942630, ENST00000942631, ENST00000942632
RefSeq mRNA: 4 — MANE Select: NM_001184727
NM_001099410, NM_001099411, NM_001184727, NM_014710
CCDS: CCDS35352
Canonical transcript exons
ENST00000537097 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001038252 | 102652175 | 102652265 |
| ENSE00001638203 | 102652831 | 102652898 |
| ENSE00001782199 | 102653221 | 102653298 |
| ENSE00001885816 | 102653580 | 102659083 |
| ENSE00002254346 | 102651687 | 102651733 |
| ENSE00002270373 | 102651483 | 102651595 |
Expression profiles
Bgee: expression breadth ubiquitous, 275 present calls, max score 98.77.
FANTOM5 (CAGE): breadth broad, TPM avg 2.7804 / max 330.1331, expressed in 344 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 196986 | 2.4406 | 305 |
| 196985 | 0.3398 | 157 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle temporal gyrus | UBERON:0002771 | 98.77 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.40 | gold quality |
| endothelial cell | CL:0000115 | 97.57 | gold quality |
| cerebellar vermis | UBERON:0004720 | 96.55 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 96.36 | gold quality |
| postcentral gyrus | UBERON:0002581 | 95.86 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 95.86 | gold quality |
| cerebellar cortex | UBERON:0002129 | 95.75 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 95.74 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 95.73 | gold quality |
| cerebellum | UBERON:0002037 | 95.69 | gold quality |
| parietal lobe | UBERON:0001872 | 95.44 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 95.40 | gold quality |
| primary visual cortex | UBERON:0002436 | 95.27 | gold quality |
| entorhinal cortex | UBERON:0002728 | 95.07 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 95.01 | gold quality |
| occipital lobe | UBERON:0002021 | 94.88 | gold quality |
| left ovary | UBERON:0002119 | 94.34 | gold quality |
| pons | UBERON:0000988 | 94.20 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 94.19 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 93.99 | gold quality |
| paraflocculus | UBERON:0005351 | 93.95 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.86 | gold quality |
| blood vessel layer | UBERON:0004797 | 93.71 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 93.69 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 93.61 | gold quality |
| frontal cortex | UBERON:0001870 | 93.53 | gold quality |
| pituitary gland | UBERON:0000007 | 93.49 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.42 | gold quality |
| right ovary | UBERON:0002118 | 93.03 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.48 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ZNF699
miRNA regulators (miRDB)
60 targeting GPRASP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-3065-3P | 99.87 | 70.25 | 1407 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-383-3P | 99.85 | 65.84 | 1359 |
| HSA-MIR-8080 | 99.82 | 67.52 | 1342 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-378A-5P | 99.65 | 66.33 | 1311 |
| HSA-MIR-488-3P | 99.61 | 68.79 | 1731 |
| HSA-MIR-425-5P | 99.59 | 67.67 | 900 |
| HSA-MIR-7159-5P | 99.53 | 72.12 | 2472 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-302B-5P | 99.50 | 69.49 | 1857 |
| HSA-MIR-302D-5P | 99.50 | 69.34 | 1863 |
| HSA-MIR-4687-3P | 99.48 | 66.41 | 968 |
| HSA-MIR-372-5P | 99.41 | 69.11 | 2299 |
| HSA-MIR-330-3P | 99.41 | 69.95 | 2521 |
Literature-anchored findings (GeneRIF, showing 13)
- identified a protein that binds preferentially to the cytoplasmic tail of the delta opioid receptor as a candidate heterotrimeric GTP-binding protein (G protein)-coupled receptor-associated sorting protein (GASP) [GASP] (PMID:12142540)
- Modulation of the D2-GASP interaction is important for the functional down-regulation of D2 dopamine receptors. (PMID:16049099)
- This review describes the discovery of GASPs, their major features, interacting partners, functions and possible involvement in pathological situations including neurodegenerative diseases and cancer. (PMID:20394773)
- following this endocytosis the D(3) dopamine receptors fail to recycle and are instead targeted for degradation through an interaction with the G protein-coupled receptor (GPCR)-associated sorting protein-1 (GASP-1) (PMID:21030592)
- GASP-1 is a key regulator of the trafficking and, by extension, functional expression of GPR55 (PMID:21718301)
- These studies identify GASP-1 as a potential new serum and tumor biomarker for breast cancer. (PMID:21791203)
- LIR was able to induce gains in 1RM and quadriceps CSA similar to those observed after traditional HI. These responses may be related to the concomitant decrease in MSTN and increase in FLST isoforms, GASP-1, and SMAD-7 mRNA gene expression. (PMID:21900845)
- GASP1 was identified as a potential new serum and biomarker for brain, pancreatic, lung, and breast cancers, and gliomas. (PMID:22483848)
- Data suggest that specific serine/threonine residues in DRD2 (dopamine receptor D2) are involved in regulation of DRD2 endocytosis by GRK2 (G-protein coupled receptor kinase 2) and GASP1. (PMID:23082996)
- Study demonstrated that binding of clozapine or olanzapine to the 5-HT7 receptor leads to antagonist-mediated lysosomal degradation by exposing key residues in the C-terminal tail that interact with GASP-1 (PMID:25706089)
- G-protein coupled receptor-associated sorting protein 1 (GASP-1), a ubiquitous tumor marker, promotes proliferation and invasion of triple negative breast cancer. (PMID:35122807)
- GPRASP1 is a candidate anti-oncogene and correlates with immune microenvironment and immunotherapeutic efficiency in head and neck cancer. (PMID:36264603)
- Comprehensive pan-cancer analysis of role of GPRASP1, associated with clinical outcomes, immune microenvironment, and immunotherapeutic efficiency in pancreatic cancer. (PMID:36801507)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | armc10 | ENSDARG00000062960 |
| mus_musculus | Gprasp1 | ENSMUSG00000043384 |
| rattus_norvegicus | Gprasp1 | ENSRNOG00000049985 |
| caenorhabditis_elegans | WBGENE00013456 |
Paralogs (10): ARMCX3 (ENSG00000102401), ARMCX5 (ENSG00000125962), ARMCX1 (ENSG00000126947), ARMC12 (ENSG00000157343), GPRASP2 (ENSG00000158301), ARMC10 (ENSG00000170632), ARMCX2 (ENSG00000184867), ARMCX4 (ENSG00000196440), GPRASP3 (ENSG00000198908), ARMCX6 (ENSG00000198960)
Protein
Protein identifiers
G-protein coupled receptor-associated sorting protein 1 — Q5JY77 (reviewed: Q5JY77)
All UniProt accessions (1): Q5JY77
UniProt curated annotations — full annotation on UniProt →
Function. Modulates lysosomal sorting and functional down-regulation of a variety of G-protein coupled receptors. Targets receptors for degradation in lysosomes via its interaction with BECN2.
Subunit / interactions. Interacts with cytoplasmic tails of a variety of G-protein coupled receptors such as D2 dopamine receptor/DRD2, delta opioid receptor/OPRD1, beta-2 adrenergic receptor/ADRB2 and D4 dopamine receptor/DRD4. Interacts with PER1. Interacts with BECN2; the interaction is direct.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed in the brain, with lower expression in medulla, spinal cord and substantia nigra.
Similarity. Belongs to the GPRASP family.
RefSeq proteins (4): NP_001092880, NP_001092881, NP_001171656, NP_055525 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006911 | ARM-rpt_dom | Domain |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR043374 | GASP1-3 | Family |
Pfam: PF04826
UniProt features (14 total): region of interest 5, modified residue 3, sequence variant 3, compositionally biased region 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5JY77-F1 | 41.79 | 0.05 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 899, 297, 631
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 154 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, WWTAAGGC_UNKNOWN, GOBP_LYSOSOMAL_TRANSPORT, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOBP_ENDOSOME_TO_LYSOSOME_TRANSPORT, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_VACUOLAR_TRANSPORT, GOBP_VESICLE_MEDIATED_TRANSPORT, MODULE_453, GGGTGGRR_PAX4_03, RODWELL_AGING_KIDNEY_NO_BLOOD_DN, MODULE_66, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN, GOBP_RECEPTOR_METABOLIC_PROCESS
GO Biological Process (2): endosome to lysosome transport (GO:0008333), G protein-coupled receptor catabolic process (GO:1990172)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (3): nucleus (GO:0005634), cytosol (GO:0005829), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| lysosomal transport | 1 |
| intercellular transport | 1 |
| vesicle-mediated transport | 1 |
| receptor catabolic process | 1 |
| negative regulation of G protein-coupled receptor signaling pathway | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1547 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GPRASP1 | ADRB2 | P07550 | 754 |
| GPRASP1 | OPRM1 | P35372 | 696 |
| GPRASP1 | OPRD1 | P41143 | 680 |
| GPRASP1 | AVPR2 | P30518 | 647 |
| GPRASP1 | DRD4 | P21917 | 555 |
| GPRASP1 | GSTM1 | P09488 | 549 |
| GPRASP1 | BDKRB1 | P46663 | 539 |
| GPRASP1 | RGS3 | P49796 | 498 |
| GPRASP1 | BEX1 | Q9HBH7 | 493 |
| GPRASP1 | TENT5D | Q8NEK8 | 487 |
| GPRASP1 | CHRM3 | P20309 | 475 |
| GPRASP1 | BEX3 | Q00994 | 465 |
| GPRASP1 | BECN2 | A8MW95 | 462 |
| GPRASP1 | PTGR2 | Q8N8N7 | 447 |
| GPRASP1 | ACVR2B | Q13705 | 445 |
IntAct
34 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| BECN2 | GPRASP1 | psi-mi:“MI:0915”(physical association) | 0.580 |
| GPRASP1 | BECN2 | psi-mi:“MI:0915”(physical association) | 0.580 |
| GPRASP1 | OPRD1 | psi-mi:“MI:0915”(physical association) | 0.530 |
| GPRASP1 | OPRD1 | psi-mi:“MI:0407”(direct interaction) | 0.530 |
| CTSG | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| GPRASP1 | OPRK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| OPRM1 | GPRASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| OPRL1 | GPRASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPRASP1 | CHRM1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CHRM2 | GPRASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPRASP1 | Hrh2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPRASP1 | HTR7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TBXA2R | GPRASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ADRB1 | GPRASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CALCR | GPRASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GPRASP1 | H1-5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPRASP1 | HSPA5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Oprd1 | GPRASP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| gB | GPRASP1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GPRASP1 | TK | psi-mi:“MI:0915”(physical association) | 0.370 |
| GPRASP1 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| ATXN7 | GPRASP1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CAMK2D | DVL2 | psi-mi:“MI:0914”(association) | 0.350 |
| psi-mi:“MI:0914”(association) | 0.350 | ||
| MARK2 | SMAP | psi-mi:“MI:0914”(association) | 0.350 |
| GOLGA2 | UPK2 | psi-mi:“MI:0914”(association) | 0.350 |
| NFIB | psi-mi:“MI:0914”(association) | 0.350 | |
| EPHA4 | GPRASP1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (52): GPRASP1 (Two-hybrid), GPRASP1 (Affinity Capture-MS), GPRASP1 (Affinity Capture-RNA), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid), GPRASP1 (Two-hybrid)
ESM2 similar proteins: A0A0P0XCU3, A0A1P8BH59, A1YFC1, A1YGK6, A2T7F2, A6NJ88, B7SY83, F1QU13, F4HXQ7, F4ICX9, F4INW9, F4KCE9, O04251, O81472, O96001, P0CV01, P0CV36, P0CV42, P0CV43, P0CV45, P0CV46, P0CV55, P0CV57, P0CV58, P10322, P16531, P48786, Q0DVU4, Q10P83, Q2EI21, Q3URU2, Q5JY77, Q5QNA6, Q5R7U0, Q5SRN2, Q5U4C1, Q5XPK0, Q6K5K2, Q7T2B3, Q8N3K9
Diamond homologs: B1WBW4, Q3UZB0, Q5H9R4, Q5JY77, Q5R4B2, Q5R7U0, Q5R9J3, Q5RDG2, Q5U310, Q5U4C1, Q5XID7, Q6A058, Q6P1M9, Q6PI77, Q7L311, Q8BHS6, Q8BUY8, Q8N2F6, Q920R4, Q96D09, Q9BE11, Q9CX83, Q9D0L7, Q9P291, Q9UH62, Q6PB60, Q71HP2, Q7L4S7, Q66HF0, Q8K3A6
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 31 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| GPCR ligand binding | 6 | 18.3× | 2e-05 |
| Class A/1 (Rhodopsin-like receptors) | 5 | 17.7× | 2e-04 |
| GPCR downstream signalling | 7 | 14.5× | 2e-05 |
| Signaling by GPCR | 7 | 13.4× | 2e-05 |
| G alpha (i) signalling events | 6 | 11.1× | 3e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger | 5 | 60.0× | 7e-06 |
| adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | 5 | 42.1× | 2e-05 |
| phospholipase C-activating G protein-coupled receptor signaling pathway | 5 | 25.3× | 9e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
7 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 3 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
688 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:102653657:G:GT | donor_gain | 1.0000 |
| X:102653658:A:T | donor_gain | 1.0000 |
| X:102653678:C:G | donor_gain | 1.0000 |
| X:102651543:A:T | donor_gain | 0.9900 |
| X:102652828:TAG:T | acceptor_loss | 0.9900 |
| X:102652829:A:AG | acceptor_gain | 0.9900 |
| X:102652829:AGGC:A | acceptor_loss | 0.9900 |
| X:102652830:G:GG | acceptor_gain | 0.9900 |
| X:102652830:GGCCT:G | acceptor_gain | 0.9900 |
| X:102652896:G:GT | donor_gain | 0.9900 |
| X:102652897:AG:A | donor_loss | 0.9900 |
| X:102652898:GG:G | donor_loss | 0.9900 |
| X:102652899:G:GG | donor_loss | 0.9900 |
| X:102653204:T:G | acceptor_gain | 0.9900 |
| X:102653297:AG:A | donor_loss | 0.9900 |
| X:102653298:GG:G | donor_loss | 0.9900 |
| X:102653299:G:GA | donor_loss | 0.9900 |
| X:102653300:T:G | donor_loss | 0.9900 |
| X:102653683:T:TA | donor_gain | 0.9900 |
| X:102651600:G:GG | donor_gain | 0.9800 |
| X:102652609:G:GT | donor_gain | 0.9800 |
| X:102652671:GGCC:G | donor_gain | 0.9800 |
| X:102653215:CTGTA:C | acceptor_loss | 0.9800 |
| X:102653216:TGTA:T | acceptor_loss | 0.9800 |
| X:102653217:GTAGG:G | acceptor_loss | 0.9800 |
| X:102653220:G:T | acceptor_loss | 0.9800 |
| X:102653684:T:TA | donor_gain | 0.9800 |
| X:102653745:GAGGC:G | donor_gain | 0.9800 |
| X:102651557:G:GT | donor_gain | 0.9700 |
| X:102651594:AGGC:A | donor_loss | 0.9700 |
AlphaMissense
9340 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:102657389:T:C | L1159P | 0.980 |
| X:102657379:T:C | F1156L | 0.968 |
| X:102657381:T:A | F1156L | 0.968 |
| X:102657381:T:G | F1156L | 0.968 |
| X:102657445:G:C | A1178P | 0.961 |
| X:102657851:T:C | L1313P | 0.961 |
| X:102657512:T:C | L1200P | 0.959 |
| X:102657472:T:C | F1187L | 0.957 |
| X:102657474:T:A | F1187L | 0.957 |
| X:102657474:T:G | F1187L | 0.957 |
| X:102657812:T:C | L1300P | 0.957 |
| X:102657299:T:C | L1129P | 0.954 |
| X:102657704:T:C | L1264P | 0.954 |
| X:102656929:T:C | F1006L | 0.951 |
| X:102656931:C:A | F1006L | 0.951 |
| X:102656931:C:G | F1006L | 0.951 |
| X:102657824:C:T | S1304F | 0.951 |
| X:102658018:T:C | F1369L | 0.951 |
| X:102658020:C:A | F1369L | 0.951 |
| X:102658020:C:G | F1369L | 0.951 |
| X:102657734:T:A | V1274D | 0.946 |
| X:102657048:G:C | W1045C | 0.943 |
| X:102657048:G:T | W1045C | 0.943 |
| X:102657446:C:A | A1178E | 0.943 |
| X:102657634:T:C | C1241R | 0.942 |
| X:102657067:T:C | F1052L | 0.941 |
| X:102657069:C:A | F1052L | 0.941 |
| X:102657069:C:G | F1052L | 0.941 |
| X:102657046:T:A | W1045R | 0.939 |
| X:102657046:T:C | W1045R | 0.939 |
dbSNP variants (sampled 300 via entrez): RS1000029508 (X:102658663 G>A), RS1001381120 (X:102656303 C>G,T), RS1002915642 (X:102650742 GTC>G), RS1003156794 (X:102654700 T>C), RS1003337428 (X:102651087 G>T), RS1003538240 (X:102655353 G>A,C,T), RS1004209630 (X:102659323 G>A), RS1004547665 (X:102656810 G>A,T), RS1005084007 (X:102653939 G>A), RS1005449667 (X:102653312 T>C), RS1006224562 (X:102654235 A>T), RS1006607343 (X:102654644 A>C), RS1007049375 (X:102649653 C>G), RS1007101709 (X:102650212 T>C,G), RS1007272564 (X:102658531 G>T)
Disease associations
OMIM: gene MIM:300417 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| arteriovenous hemangioma/malformation | Moderate | X-linked |
Mondo (1): arteriovenous hemangioma/malformation (MONDO:0001256)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001165 | Arteriovenous Malformations | C14.240.850.750; C14.907.150; C16.131.240.850.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
23 total (human), top 23 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression | 7 |
| Air Pollutants | increases expression, decreases expression, increases abundance | 2 |
| Phenylmercuric Acetate | decreases expression, affects cotreatment | 2 |
| Silicon Dioxide | increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| metarrestin | affects binding, decreases reaction, increases reaction | 1 |
| triphenyl phosphate | affects expression | 1 |
| trichostatin A | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| ginsenoside Rg2 | affects binding, decreases reaction | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Nickel | decreases expression | 1 |
| Rotenone | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: arteriovenous hemangioma/malformation
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arteriovenous hemangioma/malformation