GRIA2
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Also known as GluA2GLURBGluR-K2GluR-BGluR-2
Summary
GRIA2 (glutamate ionotropic receptor AMPA type subunit 2, HGNC:4572) is a protein-coding gene on chromosome 4q32.1, encoding Glutamate receptor 2 (P42262). Ionotropic glutamate receptor that functions as a ligand-gated cation channel, gated by L-glutamate and glutamatergic agonists such as alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA), quisqualic acid, and kainic acid.
Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalian brain and are activated in a variety of normal neurophysiologic processes. This gene product belongs to a family of glutamate receptors that are sensitive to alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA), and function as ligand-activated cation channels. These channels are assembled from 4 related subunits, GRIA1-4. The subunit encoded by this gene (GRIA2) is subject to RNA editing (CAG->CGG; Q->R) within the second transmembrane domain, which is thought to render the channel impermeable to Ca(2+). Human and animal studies suggest that pre-mRNA editing is essential for brain function, and defective GRIA2 RNA editing at the Q/R site may be relevant to amyotrophic lateral sclerosis (ALS) etiology. Alternative splicing, resulting in transcript variants encoding different isoforms, (including the flip and flop isoforms that vary in their signal transduction properties), has been noted for this gene.
Source: NCBI Gene 2891 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder with language impairment and behavioral abnormalities (Definitive, ClinGen)
- GWAS associations: 1
- Clinical variants (ClinVar): 237 total — 12 pathogenic, 30 likely-pathogenic
- Phenotypes (HPO): 25
- Druggable target: yes — 6 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001083619
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4572 |
| Approved symbol | GRIA2 |
| Name | glutamate ionotropic receptor AMPA type subunit 2 |
| Location | 4q32.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GluA2, GLURB, GluR-K2, GluR-B, GluR-2 |
| Ensembl gene | ENSG00000120251 |
| Ensembl biotype | protein_coding |
| OMIM | 138247 |
| Entrez | 2891 |
Gene structure
Transcript identifiers
Ensembl transcripts: 39 — 22 protein_coding, 10 nonsense_mediated_decay, 5 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000264426, ENST00000296526, ENST00000323661, ENST00000393815, ENST00000471736, ENST00000503437, ENST00000503980, ENST00000504801, ENST00000505888, ENST00000506284, ENST00000507898, ENST00000509417, ENST00000510854, ENST00000512774, ENST00000645636, ENST00000703717, ENST00000703718, ENST00000703719, ENST00000703750, ENST00000703751, ENST00000703752, ENST00000703753, ENST00000703754, ENST00000703755, ENST00000703756, ENST00000703757, ENST00000703758, ENST00000703759, ENST00000703760, ENST00000703761, ENST00000703762, ENST00000703763, ENST00000703764, ENST00000703765, ENST00000703766, ENST00000703767, ENST00000703768, ENST00000703769, ENST00000703770
RefSeq mRNA: 5 — MANE Select: NM_001083619
NM_000826, NM_001083619, NM_001083620, NM_001379000, NM_001379001
CCDS: CCDS3797, CCDS43274, CCDS43275, CCDS93659
Canonical transcript exons
ENST00000264426 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002450850 | 157334010 | 157334120 |
| ENSE00002484343 | 157335671 | 157335877 |
| ENSE00003467039 | 157362799 | 157363047 |
| ENSE00003485442 | 157321438 | 157321599 |
| ENSE00003518638 | 157359896 | 157360143 |
| ENSE00003524693 | 157312679 | 157312875 |
| ENSE00003534977 | 157336377 | 157336747 |
| ENSE00003553449 | 157361010 | 157361124 |
| ENSE00003573388 | 157317658 | 157317711 |
| ENSE00003578829 | 157333249 | 157333353 |
| ENSE00003638947 | 157332819 | 157332986 |
| ENSE00003670666 | 157341264 | 157341462 |
| ENSE00003691974 | 157303552 | 157303791 |
| ENSE00003989795 | 157363435 | 157366075 |
| ENSE00003989820 | 157220728 | 157221130 |
| ENSE00003989848 | 157221667 | 157221807 |
Expression profiles
Bgee: expression breadth ubiquitous, 212 present calls, max score 99.82.
FANTOM5 (CAGE): breadth broad, TPM avg 10.7708 / max 2253.5174, expressed in 200 samples.
FANTOM5 promoters (11 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 50246 | 4.0335 | 153 |
| 50245 | 3.1718 | 135 |
| 50242 | 2.1338 | 133 |
| 50244 | 0.7147 | 104 |
| 50241 | 0.3211 | 96 |
| 50249 | 0.1025 | 60 |
| 50247 | 0.0858 | 46 |
| 50252 | 0.0753 | 13 |
| 50248 | 0.0690 | 45 |
| 50243 | 0.0372 | 23 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| frontal pole | UBERON:0002795 | 99.82 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 99.79 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 99.77 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 99.76 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 99.56 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 99.52 | gold quality |
| parietal lobe | UBERON:0001872 | 99.50 | gold quality |
| postcentral gyrus | UBERON:0002581 | 99.49 | gold quality |
| cerebellar vermis | UBERON:0004720 | 99.49 | gold quality |
| entorhinal cortex | UBERON:0002728 | 99.46 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 99.43 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 99.41 | gold quality |
| paraflocculus | UBERON:0005351 | 99.11 | gold quality |
| occipital lobe | UBERON:0002021 | 99.01 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 98.96 | gold quality |
| primary visual cortex | UBERON:0002436 | 98.83 | gold quality |
| endothelial cell | CL:0000115 | 98.57 | gold quality |
| cortical plate | UBERON:0005343 | 98.50 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.41 | gold quality |
| corpus callosum | UBERON:0002336 | 98.25 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.10 | gold quality |
| ventral tegmental area | UBERON:0002691 | 97.98 | gold quality |
| frontal cortex | UBERON:0001870 | 97.95 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 97.95 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 97.60 | gold quality |
| cerebral cortex | UBERON:0000956 | 97.59 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.56 | gold quality |
| cerebellum | UBERON:0002037 | 97.54 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 97.54 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.47 | gold quality |
Single-cell (SCXA)
Detected in 9 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-75140 | yes | 1692.08 |
| E-MTAB-10485 | yes | 449.71 |
| E-HCAD-5 | yes | 56.04 |
| E-HCAD-35 | yes | 30.94 |
| E-MTAB-7316 | yes | 30.73 |
| E-GEOD-84465 | yes | 27.25 |
| E-GEOD-137537 | yes | 16.46 |
| E-GEOD-93593 | yes | 16.11 |
| E-ANND-3 | yes | 6.21 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ESR1, HR, MECP2, NCOA2, NRF1, REST, SP1, SP3, SP4
miRNA regulators (miRDB)
243 targeting GRIA2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
Literature-anchored findings (GeneRIF, showing 40)
- Post-transcriptional editing of this subunit at the Q/R/N site controls calcium permeability (PMID:11860506)
- Flip and flop splice variants of AMPA receptor subunits in the spinal cord of amyotrophic lateral sclerosis. (PMID:12125045)
- role of interaction with N-ethylmaleimide-sensitive factor in regulation of AMPA receptors by brain-derived neurotrophic factor (PMID:12130635)
- Low levels of GluR2 mRNA in motoneurons of ALS did not differ from the control group, implying that selective reduction of the GluR2 subunit cannot be a mechanism of AMPA receptor-mediated neurotoxicity in ALS (PMID:12694394)
- the Q/R site of GluRs editing is regulated in a regional manner and the GluR2 Q/R site editing is critically regulated by ADAR2 in human brain (PMID:12859334)
- GluR2, a subunit of a ligand-gated cation channel, is up-regulated in leiomyomata relative to myometrium by 15- to 30-fold at the protein and mRNA level and is localized in endothelial cells (PMID:14630051)
- There is a defect in the editing of the mRNA encoding the GluR2 subunit of glutamate AMPA receptors in the spinal motor neurons of individuals affected by amyotrophic lateral sclerosis (PMID:14985749)
- R/G editing status: the relative amount of edited GLUR2 mRNA was increased in epileptic hippocampi, whereas no changes were found in neocortical tissues. (PMID:15006707)
- Control of GLUR2 translation was mediated by a sequence containing a 34-42 nucleotide imperfect GU repeat predicted to form secondary structure in vivo. This translation suppression domain is included in some rat and human GluR2 transcripts in vivo (PMID:15071096)
- This study investigated whether the AMPA receptor subunit content (GluR1, GluR2, GluR2/3) within “vulnerable” vs. “resistant” sectors of the hippocampus is quantitatively altered with increasing Alzheimer Disease neuropathology (PMID:15144856)
- cell loss and up-regulation of glutamate receptor subunits appear early in temporal lobe epilepsy and contribute to the synaptic plasticity that may facilitate the subsequent sprouting of mossy fiber collaterals (PMID:15145077)
- GluR2 was localized to the perikarya and proximal dendrites of BLA neurons; dense labeling was also present over the pyramidal cell layer of hippocampal subfields CA1 and CA3 (PMID:16045445)
- Circumstance data have indicated that the GluR2 subunits dictate Ca2+/Zn2+ permeability of AMPA receptor channels and gate injurious Ca2+/Zn2+ signals in vulnerable neurons. (PMID:16215279)
- Laser capture microdissection combined with quantitative PCR was used to examine the expression of AMPA (GRIA1-4) and NMDA (GRIN1, 2A and 2B) subunit mRNA levels in Layer II/III and Layer V pyramidal cells (PMID:17942280)
- Of the three AMPA genes analyzed here, only GRIA3 seems to be involved in the pathogenesis of schizophrenia, but only in females. (PMID:18163426)
- utilized reverse-transcription polymerase chain reaction and BbvI digestion to demonstrate that neural progenitor cells contain Q/R-unedited GluR2, and differentiated cells contain Q/R-edited GluR2 subunits (PMID:18403631)
- the GluR4 subunit exhibits a different correlation between receptor activation and ligand-binding domain cleft closure than does GluR2 (PMID:19102704)
- These findings indicate that the absence of the GluR2 subunit favours malignancy in gliomas (PMID:19558602)
- This dimeric structure provides a mechanism for how the ATDs can drive receptor assembly and subtype-restricted composition. (PMID:19651138)
- [review] The importance of mGlu2/3 glutamate receptors during normal central nervous system development is likely to play an important mechanistic role in the neurodevelopmental hypothesis of schizophrenia. (PMID:19933774)
- We conclude that polymorphisms in the GluR2 gene (GRIA2) are not a major contributory factor in the pathogenesis of ALS. (PMID:20409611)
- Transsynaptic signaling mediated by the extracellular domain of GluR2 regulates the stability of presynaptic terminals. (PMID:21173224)
- Data show that CALM influences the cell surface level of the AMPA receptor subunit GluR2. (PMID:21221849)
- Gain-of-function glutamate receptor interacting protein 1 variants alter GluA2 recycling and surface distribution in patients with autism (PMID:21383172)
- The balance of expression of nerve growth factor (NGF) and that of its receptors shifts toward cell death mechanisms during the progression of Alzheimer disease. (PMID:21397006)
- New insights in endosomal dynamics and AMPA receptor trafficking (PMID:21843653)
- AMPA receptor regulation during synaptic plasticity in hippocampus and neocortex (PMID:21856433)
- the GluR2 gene is embedded into an open chromatin configuration in glioma cells and expression of GluR2 is controlled by REST and Sp1 (PMID:21948504)
- Did not observed significant association between GRIA2 polymorphisms and clinical improvement in patients with Major depressive disorder.But rs4302506 and rs4403097 single nucleotide polymorphisms could be associated with age of onset of the disease. (PMID:22057216)
- significant association GRIA2 polymorphisms was found with the diagnosis of schizophrenia. (PMID:22094384)
- SNPs within GRIA2 may not be associated with the development and treatment outcomes in BD (PMID:22122651)
- ADAR2 expression level reflects editing activity at the GluA2 Q/R site; although the edited GluA2 pre-mRNA is readily spliced, the unedited GluA2 pre-mRNA is also spliced and transported to the cytoplasm when ADAR2 expression is low. (PMID:22366356)
- We demonstrated that the expression of GRIA2 among the differentially expressed genes provides better prognosis of patients with advanced serous papillary ovarian adenocarcinoma. (PMID:22644307)
- Studies indicate that AMPAR trafficking is a key mechanism that drives nascent synapse development, and is the main determinant of both Hebbian and homeostatic plasticity in mature synapses. (PMID:23475111)
- The ionotrophic glutamate receptors AMPA2 and AMPA3 were decreased in hippocampus in patient with multiple sclerosis. (PMID:23595422)
- The data potentially suggest a lack of epistatic interaction between GRIA2 and GRIA4 variants regarding clinical outcomes in patients with major depressive disorder. (PMID:23613500)
- the levels were comparable for complexes containing GluR2, GluR3 and GluR4 as well as 5-HT1A. Moreover, the levels of complexes containing muscarinic AChR M1, NR1 and GluR1 were significantly increased in male patients with AD. (PMID:24292102)
- GRIA2 is a useful marker for distinguishing solitary fibrous tumour from most mimics (PMID:24456377)
- Statistical analysis showed no association between migraine and the GRIA2 and GRIA4 polymorphisms investigated. (PMID:24512576)
- analysis of changes in receptor kinetics with the R628E charge-inverting mutation in the “linker” region of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor (PMID:24550387)
Cross-species orthologs
43 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | gria2b | ENSDARG00000052765 |
| danio_rerio | gria2a | ENSDARG00000070173 |
| mus_musculus | Gria2 | ENSMUSG00000033981 |
| rattus_norvegicus | Gria2 | ENSRNOG00000054204 |
| drosophila_melanogaster | GluRIA | FBGN0004619 |
| drosophila_melanogaster | GluRIIA | FBGN0004620 |
| drosophila_melanogaster | GluRIIB | FBGN0020429 |
| drosophila_melanogaster | clumsy | FBGN0026255 |
| drosophila_melanogaster | GluRIID | FBGN0028422 |
| drosophila_melanogaster | Ir7b | FBGN0029965 |
| drosophila_melanogaster | Ir7c | FBGN0029966 |
| drosophila_melanogaster | Ir7g | FBGN0029968 |
| drosophila_melanogaster | Ir25a | FBGN0031634 |
| drosophila_melanogaster | Ir60a | FBGN0034994 |
| drosophila_melanogaster | Ir64a | FBGN0035604 |
| drosophila_melanogaster | Ir68a | FBGN0036150 |
| drosophila_melanogaster | Ir68b | FBGN0036250 |
| drosophila_melanogaster | Ir75a | FBGN0036757 |
| drosophila_melanogaster | Ir75d | FBGN0036829 |
| drosophila_melanogaster | Ir76b | FBGN0036937 |
| drosophila_melanogaster | Ir84a | FBGN0037501 |
| drosophila_melanogaster | Ir85a | FBGN0037630 |
| drosophila_melanogaster | Ir92a | FBGN0038789 |
| drosophila_melanogaster | Grik | FBGN0038840 |
| drosophila_melanogaster | Ekar | FBGN0039916 |
| drosophila_melanogaster | CG11155 | FBGN0039927 |
| drosophila_melanogaster | Ir41a | FBGN0040849 |
| drosophila_melanogaster | GluRIIC | FBGN0046113 |
| drosophila_melanogaster | GluRIIE | FBGN0051201 |
| drosophila_melanogaster | Nmdar2 | FBGN0053513 |
| drosophila_melanogaster | Ir7e | FBGN0259189 |
| drosophila_melanogaster | Ir94d | FBGN0259193 |
| drosophila_melanogaster | Ir93a | FBGN0259215 |
| drosophila_melanogaster | Ir40a | FBGN0259683 |
| drosophila_melanogaster | Ir76a | FBGN0260874 |
| drosophila_melanogaster | Ir75c | FBGN0261401 |
| drosophila_melanogaster | Ir75b | FBGN0261402 |
| drosophila_melanogaster | GluRIB | FBGN0264000 |
| caenorhabditis_elegans | WBGENE00001612 | |
| caenorhabditis_elegans | glr-3 | WBGENE00001614 |
| caenorhabditis_elegans | WBGENE00001618 | |
| caenorhabditis_elegans | WBGENE00003775 | |
| caenorhabditis_elegans | WBGENE00012190 |
Paralogs (17): GRIN2D (ENSG00000105464), GRIK5 (ENSG00000105737), GRIN3B (ENSG00000116032), GRIA3 (ENSG00000125675), GRIK4 (ENSG00000149403), GRID2 (ENSG00000152208), GRIA4 (ENSG00000152578), GRIA1 (ENSG00000155511), GRIN2C (ENSG00000161509), GRIK3 (ENSG00000163873), GRIK2 (ENSG00000164418), GRIK1 (ENSG00000171189), GRIN1 (ENSG00000176884), GRID1 (ENSG00000182771), GRIN2A (ENSG00000183454), GRIN3A (ENSG00000198785), GRIN2B (ENSG00000273079)
Protein
Protein identifiers
Glutamate receptor 2 — P42262 (reviewed: P42262)
Alternative names: AMPA-selective glutamate receptor 2, GluR-B, GluR-K2, Glutamate receptor ionotropic, AMPA 2
All UniProt accessions (26): A0A994J3U8, A0A994J3V2, A0A994J3V5, A0A994J404, A0A994J413, A0A994J418, A0A994J422, A0A994J425, A0A994J4F1, A0A994J4G8, A0A994J4H3, A0A994J6J5, A0A994J6J8, A0A994J6K1, A0A994J6Y1, A0A994J6Y8, A0A994J6Z1, A0A994J6Z5, P42262, A0A994J6Z8, D6R9Z0, D6RBV7, D6RDX5, D6RFM6, F8W7L6, H0Y972
UniProt curated annotations — full annotation on UniProt →
Function. Ionotropic glutamate receptor that functions as a ligand-gated cation channel, gated by L-glutamate and glutamatergic agonists such as alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA), quisqualic acid, and kainic acid. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system and plays an important role in fast excitatory synaptic transmission. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse upon entry of monovalent and divalent cations such as sodium and calcium. The receptor then desensitizes rapidly and enters in a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of L-glutamate. Through complex formation with NSG1, GRIP1 and STX12 controls the intracellular fate of AMPAR and the endosomal sorting of the GRIA2 subunit toward recycling and membrane targeting.
Subunit / interactions. Homotetramer or heterotetramer of pore-forming glutamate receptor subunits. Tetramers may be formed by the dimerization of dimers. May interact with MPP4. Forms a ternary complex with GRIP1 and CSPG4. Interacts with ATAD1 in an ATP-dependent manner. ATAD1-catalyzed ATP hydrolysis disrupts binding to ATAD1 and to GRIP1 and leads to AMPAR complex disassembly. Interacts with GRIP1 and GRIP2. Interacts with NSF via its C-terminus. Isoform 1, but not isoform 3, interacts with PICK1. Interacts with CACNG2. Interacts with GRIA1 and SYNDIG1. Part of a complex containing GRIA2, NSF and NAPA and/or NAPB. Interacts with SNX27 (via PDZ domain); the interaction is required for recycling to the plasma membrane when endocytosed and prevent degradation in lysosomes. Interacts with LRFN1. Found in a complex with GRIA1, GRIA3, GRIA4, CNIH2, CNIH3, CACNG2, CACNG3, CACNG4, CACNG5, CACNG7 and CACNG8. Interacts with CACNG5. Interacts with OLFM2. Interacts with AP4B1, AP4E1 and AP4M1; probably indirect it mediates the somatodendritic localization of GRIA2 in neurons. Forms a complex with GRIP1, NSG1 and STX12; controls the intracellular fate of AMPAR and the endosomal sorting of the GRIA2 subunit toward recycling and membrane targeting. Interacts with IQSEC1; the interaction is required for ARF6 activation. Interacts (heterotetramer form) with CNIH2 and CNIH3; this interaction promotes expression at the plasma membrane and extensively modulates their gating properties by slowing deactivation and desensitization kinetics.
Subcellular location. Cell membrane. Postsynaptic cell membrane. Postsynaptic density membrane.
Post-translational modifications. Palmitoylated. Depalmitoylated upon L-glutamate stimulation. Cys-610 palmitoylation leads to Golgi retention and decreased cell surface expression. In contrast, Cys-836 palmitoylation does not affect cell surface expression but regulates stimulation-dependent endocytosis. Ubiquitinated by RNF167, leading to its degradation. Phosphorylation at Tyr-876 is required for interaction with IQSEC1 and ARF6 activation, which in turn triggers AMPAR internalization for persistent synaptic depression. N-glycosylated.
Disease relevance. Neurodevelopmental disorder with language impairment and behavioral abnormalities (NEDLIB) [MIM:618917] A neurodevelopmental disorder characterized by global developmental delay, impaired intellectual development, poor or absent speech, and behavioral abnormalities, such as autism spectrum disorder, repetitive behaviors, and hyperactivity. Some patients develop seizures and manifest developmental regression. The disease is caused by variants affecting the gene represented in this entry. The genetic variation producing the missense variant p.Q607E, associated with NEDLIB, is predicted to deeply affect RNA editing. In a physiological context, the adenosine (A) residue of the original glutamine (Q) codon CAG is post-transcriptionaly edited to inosine (I) by ADAR2, leading to a codon recognized by the ribosome as arginine (R). The glutamate (E) codon GAG, resulting from the genetic variation, is predicted to be edited 90% less than the normal CAG codon. If edited, the codon GIG would be translated as p.Q607G.
Domain organisation. The M4 transmembrane segment mediates tetramerization and is required for cell surface expression.
Miscellaneous. The postsynaptic actions of L-glutamate are mediated by a variety of receptors that are named according to their selective agonists. This receptor binds AMPA (quisqualate) > L-glutamate > kainate.
Similarity. Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. GRIA2 subfamily.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P42262-1 | Flop | yes |
| P42262-2 | Flip | |
| P42262-3 | 3, Long | |
| P42262-4 | 4 |
RefSeq proteins (5): NP_000817, NP_001077088, NP_001077089, NP_001365929, NP_001365930 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001320 | Iontro_rcpt_C | Domain |
| IPR001508 | Iono_Glu_rcpt_met | Family |
| IPR001828 | ANF_lig-bd_rcpt | Domain |
| IPR015683 | Ionotropic_Glu_rcpt | Family |
| IPR019594 | Glu/Gly-bd | Domain |
| IPR028082 | Peripla_BP_I | Homologous_superfamily |
Pfam: PF00060, PF01094, PF10613
Catalyzed reactions (Rhea), 2 shown:
- Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
- Na(+)(in) = Na(+)(out) (RHEA:34963)
UniProt features (123 total): strand 32, helix 25, sequence variant 19, turn 7, binding site 6, modified residue 6, topological domain 5, glycosylation site 4, sequence conflict 4, transmembrane region 3, splice variant 3, lipid moiety-binding region 2, disulfide bond 2, intramembrane region 2, signal peptide 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
16 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5ZG2 | X-RAY DIFFRACTION | 1.25 |
| 5ZG1 | X-RAY DIFFRACTION | 1.32 |
| 7F3O | X-RAY DIFFRACTION | 1.44 |
| 5YBF | X-RAY DIFFRACTION | 1.5 |
| 5YBG | X-RAY DIFFRACTION | 1.52 |
| 5ZG0 | X-RAY DIFFRACTION | 1.58 |
| 5ZG3 | X-RAY DIFFRACTION | 1.65 |
| 3RN8 | X-RAY DIFFRACTION | 1.7 |
| 5H8S | X-RAY DIFFRACTION | 1.7 |
| 8I0B | X-RAY DIFFRACTION | 1.73 |
| 3RNN | X-RAY DIFFRACTION | 1.75 |
| 2WJW | X-RAY DIFFRACTION | 1.8 |
| 2XHD | X-RAY DIFFRACTION | 1.8 |
| 3UA8 | X-RAY DIFFRACTION | 1.9 |
| 3R7X | X-RAY DIFFRACTION | 2.1 |
| 2WJX | X-RAY DIFFRACTION | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P42262-F1 | 85.24 | 0.62 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6): 499; 501; 506; 675; 676; 726
Post-translational modifications (8): 683, 717, 860, 863, 876, 880, 610, 836
Disulfide bonds (2): 78–330, 739–794
Glycosylation sites (4): 256, 370, 406, 413
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-399710 | Activation of AMPA receptors |
| R-HSA-416993 | Trafficking of GluR2-containing AMPA receptors |
| R-HSA-438066 | Unblocking of NMDA receptors, glutamate binding and activation |
| R-HSA-9022699 | MECP2 regulates neuronal receptors and channels |
| R-HSA-9620244 | Long-term potentiation |
MSigDB gene sets: 344 (showing top):
TAATAAT_MIR126, MODY_HIPPOCAMPUS_POSTNATAL, BENPORATH_ES_WITH_H3K27ME3, chr4q32, MODULE_274, GOMF_GLUTAMATE_GATED_RECEPTOR_ACTIVITY, GOCC_CELL_SURFACE, TACAATC_MIR508, MOTAMED_RESPONSE_TO_ANDROGEN_UP, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_CELL_CELL_SIGNALING, MODULE_66, GTGCCTT_MIR506, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, RAMALHO_STEMNESS_DN
GO Biological Process (10): ionotropic glutamate receptor signaling pathway (GO:0035235), synaptic transmission, glutamatergic (GO:0035249), modulation of chemical synaptic transmission (GO:0050804), monoatomic ion transport (GO:0006811), signal transduction (GO:0007165), cell surface receptor signaling pathway (GO:0007166), chemical synaptic transmission (GO:0007268), monoatomic ion transmembrane transport (GO:0034220), regulation of postsynaptic membrane potential (GO:0060078), monoatomic cation transmembrane transport (GO:0098655)
GO Molecular Function (10): amyloid-beta binding (GO:0001540), glutamate-gated receptor activity (GO:0004970), AMPA glutamate receptor activity (GO:0004971), ligand-gated monoatomic cation channel activity (GO:0099094), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), monoatomic ion channel activity (GO:0005216), protein binding (GO:0005515), ligand-gated monoatomic ion channel activity (GO:0015276), transmitter-gated monoatomic ion channel activity (GO:0022824), signaling receptor activity (GO:0038023)
GO Cellular Component (16): plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), postsynaptic density (GO:0014069), dendrite (GO:0030425), endocytic vesicle membrane (GO:0030666), asymmetric synapse (GO:0032279), AMPA glutamate receptor complex (GO:0032281), neuronal cell body (GO:0043025), dendritic spine (GO:0043197), excitatory synapse (GO:0060076), postsynapse (GO:0098794), postsynaptic density membrane (GO:0098839), postsynaptic endocytic zone (GO:0098843), membrane (GO:0016020), synapse (GO:0045202), postsynaptic membrane (GO:0045211)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Glutamate binding, activation of AMPA receptors and synaptic plasticity | 1 |
| Trafficking of AMPA receptors | 1 |
| Activation of NMDA receptors and postsynaptic events | 1 |
| Transcriptional Regulation by MECP2 | 1 |
| Post NMDA receptor activation events | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| postsynapse | 3 |
| cellular anatomical structure | 3 |
| glutamate-gated receptor activity | 2 |
| chemical synaptic transmission | 2 |
| transmitter-gated monoatomic ion channel activity | 2 |
| postsynaptic density | 2 |
| synapse | 2 |
| glutamate receptor signaling pathway | 1 |
| ligand-gated ion channel signaling pathway | 1 |
| regulation of trans-synaptic signaling | 1 |
| transport | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| signal transduction | 1 |
| anterograde trans-synaptic signaling | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| regulation of membrane potential | 1 |
| monoatomic cation transport | 1 |
| monoatomic ion transmembrane transport | 1 |
| peptide binding | 1 |
| dicarboxylic acid transmembrane transporter activity | 1 |
| glutamate receptor activity | 1 |
| amino acid transmembrane transporter activity | 1 |
| ionotropic glutamate receptor signaling pathway | 1 |
| monoatomic cation channel activity | 1 |
| ligand-gated monoatomic ion channel activity | 1 |
| regulation of postsynaptic membrane potential | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| binding | 1 |
| monoatomic ion channel activity | 1 |
| ligand-gated channel activity | 1 |
| extracellular ligand-gated monoatomic ion channel activity | 1 |
| transmitter-gated channel activity | 1 |
| molecular transducer activity | 1 |
| membrane | 1 |
Protein interactions and networks
STRING
3332 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GRIA2 | PICK1 | Q9NRD5 | 999 |
| GRIA2 | GRIP1 | Q9Y3R0 | 997 |
| GRIA2 | GRIA4 | P48058 | 982 |
| GRIA2 | GRIA1 | P42261 | 982 |
| GRIA2 | GRIA3 | P42263 | 982 |
| GRIA2 | CDH2 | P19022 | 981 |
| GRIA2 | CACNG2 | Q9Y698 | 886 |
| GRIA2 | DLG4 | P78352 | 880 |
| GRIA2 | GRIP2 | Q9C0E4 | 865 |
| GRIA2 | CACNG8 | Q8WXS5 | 853 |
| GRIA2 | ADARB1 | P78555 | 819 |
| GRIA2 | GRM7 | Q14831 | 816 |
| GRIA2 | GRM5 | P41594 | 801 |
| GRIA2 | GSR | P00390 | 793 |
| GRIA2 | SLC17A7 | Q9P2U7 | 787 |
IntAct
106 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| Pick1 | GRIA2 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| NSF | GRIA2 | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| GRIA2 | NSF | psi-mi:“MI:0915”(physical association) | 0.540 |
| NUFIP1 | PDE2A | psi-mi:“MI:0914”(association) | 0.530 |
| GRIA2 | Grip1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | PARD3B | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MAST2 | GRIA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | MAST1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | HTRA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TIAM2 | GRIA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | DLG3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | GORASP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | LNX1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | DLG1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| APBA3 | GRIA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | MAGI2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | APBA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | GRID2IP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | MPP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | PDZD7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | RAPGEF6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | LIN7C | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | PDZRN4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NHERF4 | GRIA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | PATJ | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | DLG4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | IL16 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIA2 | ARHGAP21 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (109): GRIA2 (Affinity Capture-MS), GRIA2 (Affinity Capture-MS), GRIA2 (Affinity Capture-MS), GRIA2 (Affinity Capture-MS), ATP5F1 (Affinity Capture-MS), NDUFV3 (Affinity Capture-MS), NCOA4 (Affinity Capture-MS), KCNAB2 (Affinity Capture-MS), POM121 (Affinity Capture-MS), TXNL4A (Affinity Capture-MS), ECD (Affinity Capture-MS), TRMT6 (Affinity Capture-MS), TSPYL2 (Affinity Capture-MS), DPP9 (Affinity Capture-MS), GRIP1 (Affinity Capture-Western)
ESM2 similar proteins: A0A2R8QF68, B1AS29, P19439, P19490, P19491, P19492, P19493, P20262, P22756, P23818, P23819, P26591, P31422, P34299, P39086, P39087, P42260, P42261, P42262, P42263, P42264, P48058, Q01812, Q03445, Q13002, Q13003, Q14832, Q16099, Q16478, Q1ZZH1, Q21415, Q38PU2, Q38PU3, Q38PU4, Q38PU5, Q38PU6, Q38PU7, Q38PU8, Q5IS46, Q5R4M0
Diamond homologs: A0A1L8F5J9, B3LZ39, B3P2E5, B4GF83, B4I414, B4JHV0, B4KD90, B4LZB5, B4MU83, B4PVB0, B4QWW7, P19491, P23819, P34299, P35438, P35439, P42262, P54952, Q05586, Q10914, Q21415, Q24418, Q296F7, Q38PU7, Q5R1P0, A0A2R8QF68, A7XY94, B1AS29, E9NA96, P19439, P19490, P19492, P19493, P20262, P22756, P23818, P26591, P35436, P39086, P39087
SIGNOR signaling
12 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKCA | unknown | GRIA2 | phosphorylation |
| SHANK3 | “up-regulates quantity” | GRIA2 | binding |
| “glutamic acid” | “up-regulates activity” | GRIA2 | “chemical activation” |
| GRIA2 | up-regulates | Excitatory_synaptic_transmission | |
| IQSEC2 | “up-regulates quantity” | GRIA2 | relocalization |
| GRIA2 | “up-regulates quantity” | calcium(2+) | relocalization |
| PTPN5 | “down-regulates activity” | GRIA2 | dephosphorylation |
| MECP2 | “down-regulates quantity by repression” | GRIA2 | “transcriptional regulation” |
| PICK1 | “up-regulates activity” | GRIA2 | binding |
| GRIA2 | up-regulates | Synaptic_plasticity |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 76 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Trafficking of GluR2-containing AMPA receptors | 5 | 70.0× | 7e-07 |
| Assembly and cell surface presentation of NMDA receptors | 6 | 31.7× | 2e-06 |
| Neurexins and neuroligins | 7 | 28.7× | 7e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 6 | 49.1× | 1e-06 |
| receptor clustering | 5 | 44.0× | 2e-05 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 5 | 34.9× | 5e-05 |
| cell-cell adhesion | 6 | 8.6× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
237 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 12 |
| Likely pathogenic | 30 |
| Uncertain significance | 149 |
| Likely benign | 25 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1174085 | NM_001083619.3(GRIA2):c.258del (p.Val85_Tyr86insTer) | Pathogenic |
| 1685861 | NM_001083619.3(GRIA2):c.1927G>A (p.Ala643Thr) | Pathogenic |
| 1698825 | NM_001083619.3(GRIA2):c.506del (p.Ala169fs) | Pathogenic |
| 1701007 | NM_001083619.3(GRIA2):c.2375G>A (p.Gly792Glu) | Pathogenic |
| 1708230 | NM_001083619.3(GRIA2):c.699C>A (p.Tyr233Ter) | Pathogenic |
| 1803979 | NM_001083619.3(GRIA2):c.1589_1619dup (p.Asp540delinsGluValGlnThrArgSerValPheLeuSerTer) | Pathogenic |
| 2501002 | NM_001083619.3(GRIA2):c.1940T>C (p.Val647Ala) | Pathogenic |
| 2920713 | NM_001083619.3(GRIA2):c.2263dup (p.Ile755fs) | Pathogenic |
| 3903361 | NM_001083619.3(GRIA2):c.2012dup (p.Leu671fs) | Pathogenic |
| 4088182 | NM_001083619.3(GRIA2):c.1915G>A (p.Ala639Thr) | Pathogenic |
| 4813763 | NM_001083619.3(GRIA2):c.2076G>A (p.Trp692Ter) | Pathogenic |
| 929842 | NM_001083619.3(GRIA2):c.1939G>C (p.Val647Leu) | Pathogenic |
| 1012507 | NM_001083619.3(GRIA2):c.967C>T (p.Arg323Ter) | Likely pathogenic |
| 1064411 | NM_001083619.3(GRIA2):c.2363G>T (p.Trp788Leu) | Likely pathogenic |
| 1064412 | NM_001083619.3(GRIA2):c.2375G>T (p.Gly792Val) | Likely pathogenic |
| 1064413 | NM_001083619.3(GRIA2):c.1819C>G (p.Gln607Glu) | Likely pathogenic |
| 1064414 | NM_001083619.3(GRIA2):c.1937C>A (p.Thr646Asn) | Likely pathogenic |
| 1064415 | NM_001083619.3(GRIA2):c.1932C>A (p.Phe644Leu) | Likely pathogenic |
| 1064417 | NM_001083619.3(GRIA2):c.2435A>G (p.Asn812Ser) | Likely pathogenic |
| 1064418 | NM_001083619.3(GRIA2):c.2420C>T (p.Ala807Val) | Likely pathogenic |
| 1320197 | NM_001083619.3(GRIA2):c.1958_1960delinsTCTACAGCAC (p.Pro653fs) | Likely pathogenic |
| 1679184 | NM_001083619.3(GRIA2):c.1589A>T (p.Lys530Met) | Likely pathogenic |
| 1700091 | NM_001083619.3(GRIA2):c.2296G>A (p.Ala766Thr) | Likely pathogenic |
| 1700092 | NM_001083619.3(GRIA2):c.1710C>A (p.Tyr570Ter) | Likely pathogenic |
| 2501001 | NM_001083619.3(GRIA2):c.1859G>A (p.Arg620His) | Likely pathogenic |
| 2576545 | NM_001083619.3(GRIA2):c.830G>A (p.Trp277Ter) | Likely pathogenic |
| 2584383 | NM_001083619.3(GRIA2):c.2188A>T (p.Asn730Tyr) | Likely pathogenic |
| 2584460 | NM_001083619.3(GRIA2):c.1916C>G (p.Ala639Gly) | Likely pathogenic |
| 2683746 | NM_001083619.3(GRIA2):c.1883T>C (p.Phe628Ser) | Likely pathogenic |
| 2692488 | NM_001083619.3(GRIA2):c.1667G>A (p.Gly556Glu) | Likely pathogenic |
SpliceAI
3801 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:157221665:AGGG:A | acceptor_gain | 1.0000 |
| 4:157221666:GGGG:G | acceptor_gain | 1.0000 |
| 4:157221803:TGCTT:T | donor_gain | 1.0000 |
| 4:157221804:GCTT:G | donor_gain | 1.0000 |
| 4:157221804:GCTTG:G | donor_gain | 1.0000 |
| 4:157221805:CTT:C | donor_gain | 1.0000 |
| 4:157221808:G:GG | donor_gain | 1.0000 |
| 4:157303542:A:AG | acceptor_gain | 1.0000 |
| 4:157303543:T:G | acceptor_gain | 1.0000 |
| 4:157303550:A:AG | acceptor_gain | 1.0000 |
| 4:157303550:AGTCT:A | acceptor_gain | 1.0000 |
| 4:157303551:G:GA | acceptor_gain | 1.0000 |
| 4:157303551:GT:G | acceptor_gain | 1.0000 |
| 4:157303551:GTC:G | acceptor_gain | 1.0000 |
| 4:157303551:GTCT:G | acceptor_gain | 1.0000 |
| 4:157303551:GTCTG:G | acceptor_gain | 1.0000 |
| 4:157303789:GAG:G | donor_gain | 1.0000 |
| 4:157303790:AGG:A | donor_loss | 1.0000 |
| 4:157303791:GGTA:G | donor_loss | 1.0000 |
| 4:157303792:G:C | donor_loss | 1.0000 |
| 4:157303792:G:GG | donor_gain | 1.0000 |
| 4:157303793:T:A | donor_loss | 1.0000 |
| 4:157310160:G:T | donor_gain | 1.0000 |
| 4:157312677:A:AC | acceptor_loss | 1.0000 |
| 4:157312677:A:AG | acceptor_gain | 1.0000 |
| 4:157312678:G:GG | acceptor_gain | 1.0000 |
| 4:157312678:GGC:G | acceptor_gain | 1.0000 |
| 4:157312678:GGCT:G | acceptor_gain | 1.0000 |
| 4:157312678:GGCTT:G | acceptor_gain | 1.0000 |
| 4:157312819:G:GT | donor_gain | 1.0000 |
AlphaMissense
5826 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:157221130:G:T | G30W | 1.000 |
| 4:157221667:G:A | G30E | 1.000 |
| 4:157221669:G:T | G31W | 1.000 |
| 4:157221673:T:C | L32P | 1.000 |
| 4:157221676:T:C | F33S | 1.000 |
| 4:157221676:T:G | F33C | 1.000 |
| 4:157221717:G:T | G47W | 1.000 |
| 4:157221789:T:C | F71L | 1.000 |
| 4:157221790:T:G | F71C | 1.000 |
| 4:157221791:C:A | F71L | 1.000 |
| 4:157221791:C:G | F71L | 1.000 |
| 4:157303554:T:A | C78S | 1.000 |
| 4:157303554:T:C | C78R | 1.000 |
| 4:157303555:G:A | C78Y | 1.000 |
| 4:157303555:G:C | C78S | 1.000 |
| 4:157303555:G:T | C78F | 1.000 |
| 4:157303556:C:G | C78W | 1.000 |
| 4:157303582:C:A | A87D | 1.000 |
| 4:157303590:G:A | G90R | 1.000 |
| 4:157303590:G:C | G90R | 1.000 |
| 4:157303591:G:A | G90E | 1.000 |
| 4:157303633:G:A | C104Y | 1.000 |
| 4:157303634:C:G | C104W | 1.000 |
| 4:157303642:T:C | L107P | 1.000 |
| 4:157303755:T:A | W145R | 1.000 |
| 4:157303755:T:C | W145R | 1.000 |
| 4:157312691:T:C | L161P | 1.000 |
| 4:157312703:T:C | L165P | 1.000 |
| 4:157321487:T:A | V257D | 1.000 |
| 4:157321493:G:A | G259E | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000055297 (4:157339399 T>G), RS1000062138 (4:157304508 T>C), RS1000073527 (4:157325931 A>G), RS1000090272 (4:157349941 A>G,T), RS1000090689 (4:157259735 C>G), RS1000097505 (4:157218566 T>G), RS1000114683 (4:157247246 A>G,T), RS1000157317 (4:157341885 GA>G), RS1000161472 (4:157297071 A>G), RS1000180902 (4:157343136 A>G), RS1000185202 (4:157254852 A>G), RS1000209669 (4:157335316 G>A,T), RS1000230288 (4:157356267 G>C), RS1000258568 (4:157349076 C>CTT), RS1000309963 (4:157253954 T>A)
Disease associations
OMIM: gene MIM:138247 | disease phenotypes: MIM:618917
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with language impairment and behavioral abnormalities | Definitive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with language impairment and behavioral abnormalities | Definitive | AD |
Mondo (2): neurodevelopmental disorder with language impairment and behavioral abnormalities (MONDO:0030060), neurodevelopmental disorder (MONDO:0700092)
Orphanet (0):
HPO phenotypes
25 total (25 of 25 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000253 | Progressive microcephaly |
| HP:0000722 | Compulsive behaviors |
| HP:0000729 | Autistic behavior |
| HP:0000733 | Motor stereotypy |
| HP:0000750 | Delayed speech and language development |
| HP:0001249 | Intellectual disability |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001332 | Dystonia |
| HP:0001344 | Absent speech |
| HP:0001762 | Talipes equinovarus |
| HP:0002059 | Cerebral atrophy |
| HP:0002066 | Gait ataxia |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002072 | Chorea |
| HP:0002373 | Febrile seizure (within the age range of 3 months to 6 years) |
| HP:0002540 | Inability to walk |
| HP:0007359 | Focal-onset seizure |
| HP:0012171 | Stereotypical hand wringing |
| HP:0020221 | Clonic seizure |
| HP:0032792 | Tonic seizure |
| HP:0100716 | Self-injurious behavior |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009615_7 | Triglyceride levels x loop diuretics use interaction | 2.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (4): CHEMBL2096670 (PROTEIN COMPLEX GROUP), CHEMBL3883291 (PROTEIN COMPLEX), CHEMBL3883294 (PROTEIN COMPLEX), CHEMBL4016 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
6 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 951,988 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL61593 | CYCLOTHIAZIDE | 4 | 4,410 |
| CHEMBL575060 | GLUTAMIC ACID | 3 | 929,756 |
| CHEMBL14935 | TEZAMPANEL ANHYDROUS | 2 | 106 |
| CHEMBL39664 | SELFOTEL | 2 | 2,588 |
| CHEMBL275040 | KAINIC ACID | 2 | 15,084 |
| CHEMBL1214399 | GSK-729327 | 1 | 44 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: lgic — Ionotropic glutamate receptors
Most potent curated ligand interactions (4 total), top 4:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| talampanel | Antagonist | 7.82 | pKi |
| LY404187 | Positive | 6.82 | pEC50 |
| LY392098 | Positive | 6.66 | pEC50 |
| cyclothiazide | Positive | 5.65 | pEC50 |
Binding affinities (BindingDB)
4 measured of 9 human assays (9 total across all organisms); most potent 4 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| LY-302679 | KI | 820 nM |
| LY-293558 | KI | 3200 nM |
| LY 457691 | KI | 5500 nM |
| LY-458545 | KI | 8300 nM |
ChEMBL bioactivities
506 potent at pChembl≥5 of 675 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.90 | EC50 | 1.259 | nM | CHEMBL4218628 |
| 8.85 | EC50 | 1.4 | nM | CHEMBL4218628 |
| 8.70 | EC50 | 1.995 | nM | CHEMBL4091984 |
| 8.70 | EC50 | 2 | nM | CHEMBL4091984 |
| 8.52 | Ki | 3 | nM | CHEMBL3088070 |
| 8.41 | Ki | 3.89 | nM | CHEMBL370038 |
| 8.40 | Ki | 4 | nM | CHEMBL12696 |
| 8.40 | Ki | 4 | nM | CHEMBL84142 |
| 8.40 | Ki | 4 | nM | CHEMBL82375 |
| 8.30 | Ki | 5 | nM | CHEMBL13076 |
| 8.30 | Ki | 5 | nM | CHEMBL273675 |
| 8.15 | Ki | 7 | nM | CHEMBL309831 |
| 7.87 | EC50 | 13.4 | nM | CHEMBL4202524 |
| 7.84 | EC50 | 14.45 | nM | CHEMBL4202524 |
| 7.82 | Ki | 15 | nM | CHEMBL12510 |
| 7.80 | Ki | 16 | nM | CHEMBL188018 |
| 7.78 | Ki | 16.7 | nM | CHEMBL331696 |
| 7.78 | Ki | 16.8 | nM | (S)-AMPA |
| 7.77 | Ki | 17 | nM | (R,S)-AMPA |
| 7.72 | Ki | 19 | nM | CHEMBL90251 |
| 7.72 | IC50 | 19 | nM | (R,S)-AMPA |
| 7.71 | Ki | 19.3 | nM | CHEMBL331644 |
| 7.70 | Ki | 20 | nM | CHEMBL5192550 |
| 7.70 | Ki | 20 | nM | CHEMBL310503 |
| 7.66 | Ki | 22 | nM | CHEMBL116565 |
| 7.66 | Ki | 22 | nM | CHEMBL293613 |
| 7.64 | IC50 | 23 | nM | (R,S)-AMPA |
| 7.60 | Ki | 25.1 | nM | CHEMBL123132 |
| 7.52 | IC50 | 30 | nM | CHEMBL94859 |
| 7.50 | EC50 | 32 | nM | CHEMBL215090 |
| 7.44 | EC50 | 36 | nM | CHEMBL384271 |
| 7.40 | IC50 | 40 | nM | (R,S)-AMPA |
| 7.38 | EC50 | 42 | nM | CHEMBL384402 |
| 7.34 | EC50 | 46.13 | nM | CHEMBL4062524 |
| 7.33 | EC50 | 47 | nM | CHEMBL214833 |
| 7.32 | EC50 | 48 | nM | CHEMBL3800556 |
| 7.31 | Ki | 49 | nM | CHEMBL12989 |
| 7.30 | EC50 | 50 | nM | CHEMBL4062524 |
| 7.28 | Ki | 53.1 | nM | CHEMBL121388 |
| 7.28 | IC50 | 52 | nM | NBQX |
| 7.27 | Ki | 54 | nM | CHEMBL79348 |
| 7.26 | EC50 | 55 | nM | CHEMBL384402 |
| 7.24 | EC50 | 57 | nM | CHEMBL215090 |
| 7.24 | Ki | 57 | nM | CHEMBL5199485 |
| 7.22 | Ki | 60 | nM | CHEMBL79454 |
| 7.20 | IC50 | 63 | nM | CHEMBL293206 |
| 7.18 | Ki | 66 | nM | CHEMBL5209014 |
| 7.18 | Ki | 66 | nM | CHEMBL314248 |
| 7.17 | Ki | 68 | nM | CHEMBL93649 |
| 7.16 | Ki | 70 | nM | NBQX |
PubChem BioAssay actives
438 with measured affinity, of 1108 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-cyclopropyl-6-[2-(4-cyclopropyl-1,1-dioxo-2,3-dihydro-1lambda6,2,4-benzothiadiazin-6-yl)ethyl]-2,3-dihydro-1lambda6,2,4-benzothiadiazine 1,1-dioxide | 1380931: Positive allosteric modulation of GluA2Q flop isoform (unknown origin) expressed in HEK293 cells assessed as increase in L-glutamate induced calcium flux after 1 hr by fluo-4AM dye-based fluorescence assay | ec50 | 0.0013 | uM |
| 4-cyclopropyl-7-(3-methoxyphenoxy)-2,3-dihydro-1lambda6,2,4-benzothiadiazine 1,1-dioxide | 1478393: Positive allosteric modulation of GluA2 (Q) flop isoform (unknown origin) expressed in HEK293 cells assessed as potentiation of glutamate-evoked calcium flux by fluo-4/AM dye-based fluorescence assay | ec50 | 0.0020 | uM |
| (3S,4aS,6S,8aR)-6-[5-(4-chlorophenyl)-2-(2H-tetrazol-5-yl)phenoxy]-1,2,3,4,4a,5,6,7,8,8a-decahydroisoquinoline-3-carboxylic acid;hydrochloride | 1054527: Displacement of [3H]AMPA from homomeric recombinant GluA2 receptor (unknown origin) | ki | 0.0030 | uM |
| (2S)-2-amino-3-[5-(2-methyltetrazol-5-yl)-3-oxo-1,2-oxazol-4-yl]propanoic acid | 239016: Binding affinity for ionotropic Glutamate receptor AMPA 2 expressed in Sf9 cells | ki | 0.0039 | uM |
| 4-methyl-6-[2-(4-methyl-1,1-dioxo-2,3-dihydro-1lambda6,2,4-benzothiadiazin-6-yl)ethyl]-2,3-dihydro-1lambda6,2,4-benzothiadiazine 1,1-dioxide | 1380931: Positive allosteric modulation of GluA2Q flop isoform (unknown origin) expressed in HEK293 cells assessed as increase in L-glutamate induced calcium flux after 1 hr by fluo-4AM dye-based fluorescence assay | ec50 | 0.0134 | uM |
| 7-[4-[(4-carboxyphenyl)carbamoyloxymethyl]imidazol-1-yl]-3-oxo-6-(trifluoromethyl)-4H-quinoxaline-2-carboxylic acid | 1859131: Binding affinity to AMPA receptor (unknown origin) | ki | 0.0160 | uM |
| (2S)-2-amino-3-(6-chloro-3,5-dioxo-1,2,4-triazin-2-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.0167 | uM |
| (2S)-2-amino-3-(5-methyl-3-oxo-1,2-oxazol-4-yl)propanoic acid | 239016: Binding affinity for ionotropic Glutamate receptor AMPA 2 expressed in Sf9 cells | ki | 0.0168 | uM |
| 2-amino-3-(5-methyl-3-oxo-1,2-oxazol-4-yl)propanoic acid | 93098: Binding affinity of compound was determined towards cloned Ionotropic glutamate receptor AMPA 2 (GluR2) expressed in Sf 9 insect cells | ki | 0.0170 | uM |
| 8-(3-carboxypyrrol-1-yl)-7-nitro-4-oxo-5H-[1,2,4]triazolo[1,5-a]quinoxaline-2-carboxylic acid | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.0190 | uM |
| (2S)-2-amino-3-(6-bromo-3,5-dioxo-1,2,4-triazin-2-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.0193 | uM |
| 3-ethyl-12-imidazol-1-yl-11-nitro-2,5,8,13-tetrazatricyclo[7.4.0.02,6]trideca-1(13),3,5,9,11-pentaen-7-one | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.0200 | uM |
| 7-[4-[(4-carboxyphenyl)carbamoyloxymethyl]imidazol-1-yl]-6-nitro-3-oxo-4H-quinoxaline-2-carboxylic acid | 1859131: Binding affinity to AMPA receptor (unknown origin) | ki | 0.0220 | uM |
| (2S)-2-amino-3-(5-fluoro-2,4-dioxopyrimidin-1-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.0251 | uM |
| 2-amino-3-[5-(2-methyltetrazol-5-yl)-3-oxo-1,2-oxazol-4-yl]propanoic acid | 92806: In vitro binding affinity against Ionotropic glutamate receptor AMPA using [3H]AMPA as radioligand | ic50 | 0.0300 | uM |
| 4-cyano-5-ethyl-1-methyl-3-[4-(2-methylsulfanylphenyl)phenyl]pyrrole-2-carboxylic acid | 270307: Activity at human recombinant iGluR2 flop expressed in HEK293 cells measured as change in intracellular calcium ion concentration in presence of glutamate by FLIPR assay | ec50 | 0.0320 | uM |
| 4-cyano-3-[4-(2-ethoxyphenyl)phenyl]-5-ethyl-1-methylpyrrole-2-carboxylic acid | 270307: Activity at human recombinant iGluR2 flop expressed in HEK293 cells measured as change in intracellular calcium ion concentration in presence of glutamate by FLIPR assay | ec50 | 0.0360 | uM |
| 3-[4-(2-chlorophenyl)phenyl]-4-cyano-5-ethyl-1-methylpyrrole-2-carboxylic acid | 270304: Activity at human recombinant iGluR2 flip expressed in HEK293 cells measured as change in intracellular calcium ion concentration in presence of glutamate by FLIPR assay | ec50 | 0.0420 | uM |
| 4-cyclopropyl-7-(3-methylphenoxy)-2,3-dihydro-1lambda6,2,4-benzothiadiazine 1,1-dioxide | 1478393: Positive allosteric modulation of GluA2 (Q) flop isoform (unknown origin) expressed in HEK293 cells assessed as potentiation of glutamate-evoked calcium flux by fluo-4/AM dye-based fluorescence assay | ec50 | 0.0461 | uM |
| 3-(4-tert-butylphenyl)-4-cyano-5-ethylthiophene-2-carboxylic acid | 270083: Activity against human GLUR2 flip expressed in HEK293 cells assessed as glutamate-stimulated calcium influx by FLIPR assay | ec50 | 0.0470 | uM |
| 7-[[5-chloro-3-(trifluoromethyl)pyrazol-1-yl]methyl]-3-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]-2-methyl-[1,3]thiazolo[3,2-a]pyrimidin-5-one | 1296120: Positive allosteric modulation of human GluA2 AMPAR flop isomer expressed in Dox-inducible cells measured every 5 mins by BD calcium indicator dye based-fluorescence analysis in presence of glutamate | ec50 | 0.0480 | uM |
| (2S)-2-amino-3-(5-chloro-2,4-dioxopyrimidin-1-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.0531 | uM |
| 12-imidazol-1-yl-11-nitro-2,5,8,13-tetrazatricyclo[7.4.0.02,6]trideca-1(13),3,5,9,11-pentaen-7-one | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.0570 | uM |
| 9-methyl-6-nitro-4,7,8,10-tetrahydro-1H-pyrido[3,4-f]quinoxaline-2,3-dione | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ic50 | 0.0630 | uM |
| 12-imidazol-1-yl-11-(trifluoromethyl)-2,5,8,13-tetrazatricyclo[7.4.0.02,6]trideca-1(9),3,5,10,12-pentaen-7-one | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.0660 | uM |
| 1-(2-ethoxycarbonyl-7-nitro-4-oxo-5H-[1,2,4]triazolo[1,5-a]quinoxalin-8-yl)pyrrole-3-carboxylic acid | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.0680 | uM |
| 4-cyano-3-[4-(2-cyanophenyl)phenyl]-5-ethyl-1-methylpyrrole-2-carboxylic acid | 270307: Activity at human recombinant iGluR2 flop expressed in HEK293 cells measured as change in intracellular calcium ion concentration in presence of glutamate by FLIPR assay | ec50 | 0.0730 | uM |
| cis-(1R,2R)-2-[7-[[5-chloro-3-(trifluoromethyl)pyrazol-1-yl]methyl]-2-methyl-5-oxo-[1,3]thiazolo[3,2-a]pyrimidin-3-yl]cyclopropane-1-carbonitrile | 1296120: Positive allosteric modulation of human GluA2 AMPAR flop isomer expressed in Dox-inducible cells measured every 5 mins by BD calcium indicator dye based-fluorescence analysis in presence of glutamate | ec50 | 0.0730 | uM |
| 7,8-dichloro-4-oxo-5H-[1,2,4]triazolo[1,5-a]quinoxaline-2-carboxylic acid | 1859124: Displacement of [3H]glycine from AMPA receptor (unknown origin) | ki | 0.0740 | uM |
| 3-(4-tert-butylphenyl)-4-cyano-5-(trifluoromethyl)thiophene-2-carboxylic acid | 270083: Activity against human GLUR2 flip expressed in HEK293 cells assessed as glutamate-stimulated calcium influx by FLIPR assay | ec50 | 0.0780 | uM |
| 2-amino-3-[5-(2-ethyltetrazol-5-yl)-3-oxo-1,2-oxazol-4-yl]propanoic acid | 239016: Binding affinity for ionotropic Glutamate receptor AMPA 2 expressed in Sf9 cells | ki | 0.0802 | uM |
| 6-imidazol-1-yl-7-nitro-1,4-dihydroquinoxaline-2,3-dione | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.0840 | uM |
| 2-amino-3-[3-oxo-5-(1,3-thiazol-2-yl)-1,2-oxazol-4-yl]propanoic acid | 92806: In vitro binding affinity against Ionotropic glutamate receptor AMPA using [3H]AMPA as radioligand | ic50 | 0.0940 | uM |
| 3-(4-tert-butylphenyl)-4-cyano-5-methylsulfanylthiophene-2-carboxylic acid | 270083: Activity against human GLUR2 flip expressed in HEK293 cells assessed as glutamate-stimulated calcium influx by FLIPR assay | ec50 | 0.0970 | uM |
| N-[(2S)-5-[[3,5-bis(trifluoromethyl)pyrazol-1-yl]methyl]-2,3-dihydro-1H-inden-2-yl]propane-2-sulfonamide | 551164: Modulatory activity at GluA2 receptor LBD | ec50 | 0.1000 | uM |
| N-[5-[[4-(hydroxymethyl)-3-(trifluoromethyl)pyrazol-1-yl]methyl]-2,3-dihydro-1H-inden-1-yl]propane-2-sulfonamide | 551164: Modulatory activity at GluA2 receptor LBD | ec50 | 0.1000 | uM |
| N-[(3S,4R)-4-[4-(3-acetylphenyl)phenyl]oxolan-3-yl]propane-2-sulfonamide | 539271: Positive modulation of human GluA2 flip receptor by FLIPR assay | ec50 | 0.1000 | uM |
| (2S)-2-amino-3-(5-bromo-2,4-dioxopyrimidin-1-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.1010 | uM |
| (2S)-2-amino-3-(6-iodo-3,5-dioxo-1,2,4-triazin-2-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.1010 | uM |
| 4-cyano-5-ethyl-1-methyl-3-(4-phenylphenyl)pyrrole-2-carboxylic acid | 270304: Activity at human recombinant iGluR2 flip expressed in HEK293 cells measured as change in intracellular calcium ion concentration in presence of glutamate by FLIPR assay | ec50 | 0.1030 | uM |
| 3-oxo-4,5,6,7-tetrahydro-[1,2]oxazolo[5,4-c]pyridine-7-carboxylic acid | 541698: Displacement of [3H]AMPA from GluA2-S1S2 receptor | ki | 0.1080 | uM |
| 4-cyano-5-ethyl-3-[4-(2-fluorophenyl)phenyl]-1-methylpyrrole-2-carboxylic acid | 270304: Activity at human recombinant iGluR2 flip expressed in HEK293 cells measured as change in intracellular calcium ion concentration in presence of glutamate by FLIPR assay | ec50 | 0.1110 | uM |
| (2S)-2-amino-3-(5-nitro-2,4-dioxopyrimidin-1-yl)propanoic acid | 92962: Displacement of [3H]AMPA from human Ionotropic glutamate receptor AMPA 2 expressed in HEK293 cells | ki | 0.1150 | uM |
| 2-amino-3-(3-hydroxy-5-methyltriazol-4-yl)propanoic acid | 2071188: Binding affinity to AMPA receptor (unknown origin) | ic50 | 0.1300 | uM |
| 2-[(6-ethyl-7-nitro-2,3-dioxo-1,4-dihydroquinoxalin-5-yl)methyl-methylamino]acetic acid | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ic50 | 0.1400 | uM |
| 6-imidazol-1-yl-7-nitro-1,4-dihydropyrido[2,3-b]pyrazine-2,3-dione | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.1400 | uM |
| ethyl 2-[(6-ethyl-7-nitro-2,3-dioxo-1,4-dihydroquinoxalin-5-yl)methyl-methylamino]acetate | 1866051: Antagonist activity at AMPA receptor (unknown origin) | ic50 | 0.1400 | uM |
| 8-chloro-9-(3-formylpyrrol-1-yl)-5-oxo-6H-pyrazolo[1,5-c]quinazoline-2-carboxylic acid | 1871553: Binding affinity to AMPA (unknown origin) | ki | 0.1400 | uM |
| 8-chloro-5-oxo-9-(1,2,4-triazol-4-yl)-6H-pyrazolo[1,5-c]quinazoline-2-carboxylic acid | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.1400 | uM |
| 7-chloro-4-oxo-8-(1,2,4-triazol-4-yl)-5H-[1,2,4]triazolo[1,5-a]quinoxaline-2-carboxylic acid | 1859112: Displacement of [3H]AMPA from AMPA receptor (unknown origin) | ki | 0.1400 | uM |
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, increases expression, affects expression, decreases reaction | 4 |
| Valproic Acid | affects expression, increases expression | 4 |
| Nickel | affects expression, decreases expression, decreases reaction | 3 |
| bisphenol A | decreases expression, decreases methylation | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 2 |
| Ascorbic Acid | increases expression, affects binding, affects cotreatment | 2 |
| Benzo(a)pyrene | increases methylation, affects reaction, decreases expression | 2 |
| Dronabinol | affects cotreatment, decreases expression, decreases response to substance | 2 |
| 6,7-dimethoxy-2-(pyrrolidin-1-yl)-N-(5-(pyrrolidin-1-yl)pentyl)quinazolin-4-amine | increases expression | 1 |
| ascorbate-2-phosphate | increases expression, affects binding, affects cotreatment | 1 |
| arsenite | increases methylation | 1 |
| 4-(2-(5,6,7,8-tetrahydro-5,5,8,8-tetramethyl-2-naphthalenyl)-1-propenyl)benzoic acid | affects cotreatment, increases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| deguelin | decreases expression | 1 |
| 4-chloro-N-((4-(1,1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide | decreases expression | 1 |
| Chir 99021 | affects cotreatment, increases expression, affects binding | 1 |
| pyrimidifen | decreases expression | 1 |
| thifluzamide | decreases expression | 1 |
| pyrachlostrobin | decreases expression | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| XAV939 | affects binding, affects cotreatment, increases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| 3-(4-pyridyl)-1H-indole | affects cotreatment, increases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Vorinostat | affects cotreatment, increases expression | 1 |
| Cyclic AMP | affects cotreatment, increases expression | 1 |
| Antimycin A | decreases expression | 1 |
| Cannabidiol | affects cotreatment, decreases expression, decreases response to substance | 1 |
ChEMBL screening assays
192 unique, capped per target: 163 binding, 25 functional, 4 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5114182 | Binding | Displacement of [3H]AMPA from AMPA receptor (unknown origin) | Functionalized quinoxalinones as privileged structures with broad-ranging pharmacological activities. — Eur J Med Chem |
| CHEMBL702514 | Functional | Compound was evaluated to potentiate response of AMPA-activated current in Xenopus oocytes expressing Ionotropic glutamate receptor AMPA | Enantioselective synthesis of a pyrrolo-benzothiadiazine derivative S 18986, a new AMPA receptor positive modulator — Bioorg Med Chem Lett |
| CHEMBL3871162 | ADMET | Positive allosteric modulation of human GluA2 receptor flip isoform assessed as increase in glutamate-induced calcium flux measured at time interval of 5 mins in presence of saturating glycine by calcium dye-based fluorescence assay | GluN2A-Selective Pyridopyrimidinone Series of NMDAR Positive Allosteric Modulators with an Improved in Vivo Profile. — ACS Med Chem Lett |
Cellosaurus cell lines
2 cell lines: 1 induced pluripotent stem cell, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C0F7 | SJTUXHi002-A | Induced pluripotent stem cell | Male |
| CVCL_D1SV | Abcam U-87MG GRIA2 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
| NCT03232489 | Not specified | UNKNOWN | Study for the Evaluation of the Feasibility of Applying Advanced MRI Scanning in Pediatric Clinical Practice |
Related Atlas pages
- Associated diseases: neurodevelopmental disorder with language impairment and behavioral abnormalities
- Targeted by drugs: Cyclothiazide, Piracetam
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neurodevelopmental disorder with language impairment and behavioral abnormalities