GRIK2
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Also known as GluK2MRT6GluR-6EAA4GLUK6
Summary
GRIK2 (glutamate ionotropic receptor kainate type subunit 2, HGNC:4580) is a protein-coding gene on chromosome 6q16.3, encoding Glutamate receptor ionotropic, kainate 2 (Q13002). Ionotropic glutamate receptor that functions as a cation-permeable ligand-gated ion channel, gated by L-glutamate and the glutamatergic agonist kainic acid.
Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalian brain and are activated in a variety of normal neurophysiologic processes. This gene product belongs to the kainate family of glutamate receptors, which are composed of four subunits and function as ligand-activated ion channels. The subunit encoded by this gene is subject to RNA editing at multiple sites within the first and second transmembrane domains, which is thought to alter the structure and function of the receptor complex. Alternatively spliced transcript variants encoding different isoforms have also been described for this gene. Mutations in this gene have been associated with autosomal recessive cognitive disability.
Source: NCBI Gene 2898 — RefSeq curated summary.
At a glance
- Gene–disease (curated): complex neurodevelopmental disorder (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 16
- Clinical variants (ClinVar): 306 total — 5 pathogenic, 10 likely-pathogenic
- Phenotypes (HPO): 65
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_021956
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4580 |
| Approved symbol | GRIK2 |
| Name | glutamate ionotropic receptor kainate type subunit 2 |
| Location | 6q16.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GluK2, MRT6, GluR-6, EAA4, GLUK6 |
| Ensembl gene | ENSG00000164418 |
| Ensembl biotype | protein_coding |
| OMIM | 138244 |
| Entrez | 2898 |
Gene structure
Transcript identifiers
Ensembl transcripts: 41 — 18 retained_intron, 11 protein_coding, 8 nonsense_mediated_decay, 4 protein_coding_CDS_not_defined
ENST00000358361, ENST00000369134, ENST00000369137, ENST00000369138, ENST00000413795, ENST00000421544, ENST00000436862, ENST00000455610, ENST00000487161, ENST00000487395, ENST00000681975, ENST00000682039, ENST00000682052, ENST00000682090, ENST00000682115, ENST00000682222, ENST00000682261, ENST00000682312, ENST00000682328, ENST00000682716, ENST00000682823, ENST00000682962, ENST00000683054, ENST00000683208, ENST00000683215, ENST00000683264, ENST00000683298, ENST00000683546, ENST00000683618, ENST00000683747, ENST00000683774, ENST00000683806, ENST00000683903, ENST00000683913, ENST00000684027, ENST00000684068, ENST00000684185, ENST00000684279, ENST00000684380, ENST00000684491, ENST00000684518
RefSeq mRNA: 3 — MANE Select: NM_021956
NM_001166247, NM_021956, NM_175768
CCDS: CCDS5048, CCDS5049, CCDS55045
Canonical transcript exons
ENST00000369134 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001084208 | 101799648 | 101799791 |
| ENSE00001175424 | 101686180 | 101686353 |
| ENSE00001175433 | 101682553 | 101682606 |
| ENSE00001175441 | 101676623 | 101676804 |
| ENSE00001175451 | 101626380 | 101626637 |
| ENSE00001310137 | 102055330 | 102055580 |
| ENSE00001318693 | 101859287 | 101859493 |
| ENSE00001319383 | 101818370 | 101818483 |
| ENSE00001327598 | 101802331 | 101802438 |
| ENSE00001358806 | 102035341 | 102035566 |
| ENSE00001609672 | 101928415 | 101928632 |
| ENSE00001634244 | 101889640 | 101889863 |
| ENSE00001773416 | 101924601 | 101924719 |
| ENSE00003501564 | 101621949 | 101622116 |
| ENSE00003665433 | 102068347 | 102070083 |
| ENSE00003834743 | 101398985 | 101399392 |
| ENSE00003907970 | 101393708 | 101393837 |
Expression profiles
Bgee: expression breadth ubiquitous, 213 present calls, max score 98.27.
FANTOM5 (CAGE): breadth broad, TPM avg 2.3504 / max 193.8676, expressed in 194 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 69004 | 5.5778 | 770 |
| 69003 | 0.9478 | 324 |
| 69006 | 0.9410 | 117 |
| 69011 | 0.5770 | 113 |
| 69012 | 0.2643 | 89 |
| 69013 | 0.1481 | 73 |
| 69010 | 0.1124 | 62 |
| 69038 | 0.1068 | 44 |
| 69002 | 0.0753 | 36 |
| 204115 | 0.0546 | 43 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cerebellar vermis | UBERON:0004720 | 98.27 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.59 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.56 | gold quality |
| cerebellum | UBERON:0002037 | 96.43 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 96.35 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 95.94 | gold quality |
| paraflocculus | UBERON:0005351 | 95.40 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 93.37 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 92.17 | gold quality |
| cortical plate | UBERON:0005343 | 91.71 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 90.54 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 89.99 | gold quality |
| entorhinal cortex | UBERON:0002728 | 89.89 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 89.05 | gold quality |
| endothelial cell | CL:0000115 | 88.76 | gold quality |
| right frontal lobe | UBERON:0002810 | 88.74 | gold quality |
| postcentral gyrus | UBERON:0002581 | 88.60 | gold quality |
| buccal mucosa cell | CL:0002336 | 87.97 | gold quality |
| frontal pole | UBERON:0002795 | 87.94 | gold quality |
| parietal lobe | UBERON:0001872 | 87.87 | gold quality |
| sural nerve | UBERON:0015488 | 87.75 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 87.35 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 87.33 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 87.20 | gold quality |
| primary visual cortex | UBERON:0002436 | 86.89 | gold quality |
| cingulate cortex | UBERON:0003027 | 86.89 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 86.87 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 86.84 | gold quality |
| cerebral cortex | UBERON:0000956 | 86.69 | gold quality |
| temporal lobe | UBERON:0001871 | 86.60 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 5238.46 |
| E-HCAD-25 | yes | 2683.31 |
| E-HCAD-5 | yes | 12.97 |
| E-GEOD-137537 | yes | 6.05 |
| E-ANND-3 | yes | 5.30 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
176 targeting GRIK2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Linkage and association of the glutamate receptor 6 gene with autism (PMID:11920157)
- Specific alleles in GluR6 and CA150 locus were only observed in HD patients. (PMID:12821179)
- describes the time course of the open-channel form of the receptor as a function of glutamate concentration (PMID:14567698)
- Using three single nucleotide polymorphisms in GRIK2 and one in GRIK3, we found no evidence for association with Obssessive-Compulsive disorder in case-control or family-based analyses. (PMID:15094479)
- In this study, the maternal transmission disequilibrium of the glutamate receptor GRIK2 in schizophrenia. (PMID:15305151)
- The modifier effect is actually due to the TAA repeat itself, possibly via a functional consequence on the GRIK2 mRNA. (PMID:16959037)
- Our data on altered functional properties of GluR6(M836I) provide a functional basis for the postulated linkage of GluR6 to autism. (PMID:17167233)
- phosphorylation of the C-terminal tail of GluR6 by PKA leads to potentiation of whole cell response (PMID:17379418)
- These results suggest a potential association between GRIK2 and autism in the Korean population. (PMID:17428563)
- Mutations of GluR6 are unlikely to be associated with autism in the Indian population. (PMID:17712621)
- report a complex mutation in the ionotropic glutamate receptor 6 gene (GRIK2, also called “GLUR6”) that cosegregates with moderate-to-severe nonsyndromic autosomal recessive mental retardation in a large, consanguineous Iranian family (PMID:17847003)
- Overall, our data indicate that hGluR6c might have unique properties in non-nervous cells and in the first stages of CNS development. (PMID:18289788)
- results support the involvement of genes GRIA3 and GRIK2 in antidepressant treatment-emergent suicidal ideation (PMID:18593792)
- the apo state of GluR6 undergoes a cleft closure of 29-30 degrees upon binding full agonists, one of the largest observed in the glutamate receptor family. (PMID:18658129)
- Mutations to GLUR6 binding pocket that selectively affect domoate binding are freported. (PMID:18664604)
- nonconserved residues in GluR6 define the size of the agonist-binding pocket, exerting a steric influence on the bound agonist and the extent of binding-domain closure (PMID:18690046)
- GluR6 C-terminal domain KRIP6 regulates kainate receptors by inhibiting PICK1 modulation via competition or a mutual blocking effect (PMID:18692513)
- in silico ligand-docking predicted that most partial agonists select for the closed and not, as expected, the open or intermediate conformations of the GluK2 agonist binding domain. (PMID:19225180)
- Results indicate that ions can contribute substantial free energy to active state stabilization in GluR6, and provide quantitative measurements of the energetic consequences of allosteric ion binding to a ligand-gated ion channel. (PMID:19617541)
- phosphorylation of PKC sites on GluR6 regulates surface expression of GluR6 at distinct intracellular trafficking pathways (PMID:19920140)
- Spliced variants of ionotropic glutamate receptor GluR6 is associated with astrocytoma. (PMID:20230879)
- This study supports previously reported findings of association between proximal GRIK2 single nucleotide polymorphism and obsessive-compulsive disorder in a comprehensive evaluation of the gene (PMID:20370803)
- human GluK2 is a slowly activating channel but more sensitive to glutamate, as compared to the rat ortholog; the M867I mutation does not affect the rate the equilibrium constants of the channel opening but does slow down the channel desensitization rate (PMID:20863077)
- Genotyping and linkage analysis excluded linkage of the GRIK2 gene and TUSC3 gene with mental retardation. (PMID:21557188)
- Convergent functional genomics allowed the identification of novel candidate genes, GRIK2 and NPAS2, involved in glutamatergic neurotransmission and the circadian rhythm, respectively, that are potentially associated with CFS. (PMID:21912186)
- The ACAG haplotype in the 13th haplotype block of the GRIK2 gene was associated with somatic anxiety. (PMID:22429480)
- Comprehensive analytical methods applied to a much larger sample than in previous studies do not support a role for GRIK2 as a genetic modifier of age at onset of clinical symptoms in Huntington’s disease. (PMID:22771793)
- Eight chromosome 6 SNPs, having the most significant differences, were delineated: rs10499298, rs10499299, rs17827966, rs1224329, rs1150790, rs713050, rs2518344 and rs487083; all were associated with genes GRIK2. (PMID:23037145)
- Kainate receptor GluK2a post-translational modifications differentially regulate association with 4.1N to control activity-dependent receptor endocytosis (PMID:23400781)
- we found no association between rs1556995 in GRIK2 and clozapine-induced obsessive-compulsive (OC) symptoms, implying that that GRIK2 may not play a role in the development of OC symptoms in schizophrenia patients (PMID:23660601)
- Crosslinking the ligand-binding domain dimer interface locks kainate receptors out of the main open state. (PMID:23713029)
- 14-3-3 proteins are an important regulator of GluK2a-containing KARs and may contribute to the slow decay kinetics of native KAR-EPSCs. (PMID:23861400)
- This study found in GRIK2 (glutamate receptor, ionotropic kainate 2) was most significant and also showed significant correlations with gene expression. (PMID:24662927)
- This study showed that Gluk2 association with obsessive-compulsive disorder. (PMID:24821223)
- The present study reveals an additional mechanism for the regulation of GluK2-containing kainate receptors by Src family kinases, which may be of pathological significance in ischemic stroke. (PMID:25201974)
- Parkin interacts with the kainate receptor GluK2 subunit and regulates KAR function. (PMID:25316086)
- High risk genetic markers of paranoid schizophrenia were GRIK2*ATG and GRIK2*TGG in Tatars. (PMID:25842862)
- Study demonstrates that co-assembly of recombinant kainate receptors (GluK1 and GluK2) with the Neto1 and Neto2 auxiliary subunits alters their onset and recovery from desensitization in a subunit-dependent manner (PMID:26277340)
- In the Han population in Central China, the polymorphisms of SNP rs9390754 in the GRIK2 gene may be associated with epilepsy susceptibility. (PMID:27324535)
- TTBK2 down-regulates GluK2 activity by decreasing the receptor protein abundance in the cell membrane via RAB5-dependent endocytosis. (PMID:27607061)
Cross-species orthologs
42 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | GRIK2 | ENSDARG00000113771 |
| mus_musculus | Grik2 | ENSMUSG00000056073 |
| rattus_norvegicus | Grik2 | ENSRNOG00000000368 |
| drosophila_melanogaster | GluRIA | FBGN0004619 |
| drosophila_melanogaster | GluRIIA | FBGN0004620 |
| drosophila_melanogaster | GluRIIB | FBGN0020429 |
| drosophila_melanogaster | clumsy | FBGN0026255 |
| drosophila_melanogaster | GluRIID | FBGN0028422 |
| drosophila_melanogaster | Ir7b | FBGN0029965 |
| drosophila_melanogaster | Ir7c | FBGN0029966 |
| drosophila_melanogaster | Ir7g | FBGN0029968 |
| drosophila_melanogaster | Ir25a | FBGN0031634 |
| drosophila_melanogaster | Ir60a | FBGN0034994 |
| drosophila_melanogaster | Ir64a | FBGN0035604 |
| drosophila_melanogaster | Ir68a | FBGN0036150 |
| drosophila_melanogaster | Ir68b | FBGN0036250 |
| drosophila_melanogaster | Ir75a | FBGN0036757 |
| drosophila_melanogaster | Ir75d | FBGN0036829 |
| drosophila_melanogaster | Ir76b | FBGN0036937 |
| drosophila_melanogaster | Ir84a | FBGN0037501 |
| drosophila_melanogaster | Ir85a | FBGN0037630 |
| drosophila_melanogaster | Ir92a | FBGN0038789 |
| drosophila_melanogaster | Grik | FBGN0038840 |
| drosophila_melanogaster | Ekar | FBGN0039916 |
| drosophila_melanogaster | CG11155 | FBGN0039927 |
| drosophila_melanogaster | Ir41a | FBGN0040849 |
| drosophila_melanogaster | GluRIIC | FBGN0046113 |
| drosophila_melanogaster | GluRIIE | FBGN0051201 |
| drosophila_melanogaster | Nmdar2 | FBGN0053513 |
| drosophila_melanogaster | Ir7e | FBGN0259189 |
| drosophila_melanogaster | Ir94d | FBGN0259193 |
| drosophila_melanogaster | Ir93a | FBGN0259215 |
| drosophila_melanogaster | Ir40a | FBGN0259683 |
| drosophila_melanogaster | Ir76a | FBGN0260874 |
| drosophila_melanogaster | Ir75c | FBGN0261401 |
| drosophila_melanogaster | Ir75b | FBGN0261402 |
| drosophila_melanogaster | GluRIB | FBGN0264000 |
| caenorhabditis_elegans | WBGENE00001612 | |
| caenorhabditis_elegans | glr-3 | WBGENE00001614 |
| caenorhabditis_elegans | WBGENE00001618 | |
| caenorhabditis_elegans | WBGENE00003775 | |
| caenorhabditis_elegans | WBGENE00012190 |
Paralogs (17): GRIN2D (ENSG00000105464), GRIK5 (ENSG00000105737), GRIN3B (ENSG00000116032), GRIA2 (ENSG00000120251), GRIA3 (ENSG00000125675), GRIK4 (ENSG00000149403), GRID2 (ENSG00000152208), GRIA4 (ENSG00000152578), GRIA1 (ENSG00000155511), GRIN2C (ENSG00000161509), GRIK3 (ENSG00000163873), GRIK1 (ENSG00000171189), GRIN1 (ENSG00000176884), GRID1 (ENSG00000182771), GRIN2A (ENSG00000183454), GRIN3A (ENSG00000198785), GRIN2B (ENSG00000273079)
Protein
Protein identifiers
Glutamate receptor ionotropic, kainate 2 — Q13002 (reviewed: Q13002)
Alternative names: Excitatory amino acid receptor 4, Glutamate receptor 6
All UniProt accessions (14): A0A0A0MRL4, A0A804HHV9, A0A804HI04, A0A804HIH6, A0A804HKP5, A0A804HKS7, A0A804HKU0, A0A804HL10, A0A8D9PH75, Q13002, F8WEZ8, G3XAD3, H7BZX7, H7C2P5
UniProt curated annotations — full annotation on UniProt →
Function. Ionotropic glutamate receptor that functions as a cation-permeable ligand-gated ion channel, gated by L-glutamate and the glutamatergic agonist kainic acid. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformational change leading to the opening of the cation channel, converting the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. Modulates cell surface expression of NETO2. In association with GRIK3, involved in presynaptic facilitation of glutamate release at hippocampal mossy fiber synapses. Independent of its ionotropic glutamate receptor activity, acts as a thermoreceptor conferring sensitivity to cold temperatures. Functions in dorsal root ganglion neurons.
Subunit / interactions. Homotetramer; formed by the dimerization of dimers via its N-terminal domain. Assembles into a kainate-gated homomeric channel that does not bind AMPA. Can form functional heteromeric receptors with GRIK5. Can form functional heteromeric receptors with GRIK3 and GRIK4. Interacts with DLG4. Interacts with NETO2. Interacts (via C-terminus) with KLHL17 (via kelch repeats); the interaction targets GRIK2 for degradation via ubiquitin-proteasome pathway.
Subcellular location. Cell membrane. Postsynaptic cell membrane.
Tissue specificity. Expression is higher in cerebellum than in cerebral cortex.
Post-translational modifications. Sumoylation mediates kainate receptor-mediated endocytosis and regulates synaptic transmission. Sumoylation is enhanced by PIAS3 and desumoylated by SENP1. Ubiquitinated. Ubiquitination regulates the GRIK2 levels at the synapse by leading kainate receptor degradation through proteasome. Phosphorylated by PKC at Ser-868 upon agonist activation, this directly enhance sumoylation.
Disease relevance. Intellectual developmental disorder, autosomal recessive 6 (MRT6) [MIM:611092] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRT6 patients display mild to severe intellectual disability and psychomotor development delay in early childhood. Patients do not have neurologic problems, congenital malformations, or facial dysmorphism. Body height, weight, and head circumference are normal. The disease is caused by variants affecting the gene represented in this entry. Neurodevelopmental disorder with impaired language and ataxia and with or without seizures (NEDLAS) [MIM:619580] An autosomal dominant disorder characterized by axial hypotonia and global developmental delay. Affected individuals show impaired intellectual development, delayed walking, poor speech, and behavioral abnormalities. Some patients have a more severe phenotype with early-onset seizures resembling epileptic encephalopathy, inability to walk or speak, and hypomyelination on brain imaging. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Ionotropic glutamate receptor activity is promoted by positive allosteric modulators that inhibit receptor desensitization. Ionotropic glutamate receptor activity is inhibited by ion channel blockers.Cold receptor activity is activated by temperatures between 10-19 degrees Celsius.
Domain organisation. The gate of the ion channel is formed by four transmembrane M3 helices and it opens upon stimulation by positive allosteric modulators.
Miscellaneous. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists. This receptor binds domoate > kainate > quisqualate > 6-cyano-7-nitroquinoxaline-2,3-dione > L-glutamate = 6,7-dinitroquinoxaline-2,3-dione > dihydrokainate.
Similarity. Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. GRIK2 subfamily.
Isoforms (7)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13002-1 | 1, A | yes |
| Q13002-2 | 2, B | |
| Q13002-3 | 3 | |
| Q13002-4 | 4 | |
| Q13002-5 | 5, C | |
| Q13002-6 | 6, D | |
| Q13002-7 | 7, E |
RefSeq proteins (3): NP_001159719, NP_068775, NP_786944 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001320 | Iontro_rcpt_C | Domain |
| IPR001508 | Iono_Glu_rcpt_met | Family |
| IPR001828 | ANF_lig-bd_rcpt | Domain |
| IPR015683 | Ionotropic_Glu_rcpt | Family |
| IPR019594 | Glu/Gly-bd | Domain |
| IPR028082 | Peripla_BP_I | Homologous_superfamily |
Pfam: PF00060, PF01094, PF10613
Catalyzed reactions (Rhea), 2 shown:
- Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
- Na(+)(in) = Na(+)(out) (RHEA:34963)
UniProt features (77 total): strand 14, helix 12, sequence variant 10, glycosylation site 9, binding site 6, splice variant 6, topological domain 5, transmembrane region 3, modified residue 2, disulfide bond 2, sequence conflict 2, turn 2, signal peptide 1, chain 1, cross-link 1, intramembrane region 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5CMM | X-RAY DIFFRACTION | 1.27 |
| 3QXM | X-RAY DIFFRACTION | 1.65 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13002-F1 | 83.67 | 0.48 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6): 516; 518; 523; 689; 690; 738
Post-translational modifications (3): 846, 868, 886
Disulfide bonds (2): 96–347, 750–804
Glycosylation sites (9): 67, 73, 275, 378, 412, 423, 430, 546, 751
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-451307 | Activation of Na-permeable kainate receptors |
| R-HSA-451308 | Activation of Ca-permeable Kainate Receptor |
MSigDB gene sets: 433 (showing top):
BROWNE_HCMV_INFECTION_4HR_UP, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, REACTOME_IONOTROPIC_ACTIVITY_OF_KAINATE_RECEPTORS, MODULE_274, GOBP_SENSORY_PERCEPTION_OF_TEMPERATURE_STIMULUS, GOBP_BEHAVIOR, GOMF_GLUTAMATE_GATED_RECEPTOR_ACTIVITY, GOBP_REGULATION_OF_NEURONAL_SYNAPTIC_PLASTICITY, GOBP_REGULATION_OF_SYNAPTIC_TRANSMISSION_GLUTAMATERGIC, GOBP_REGULATION_OF_SHORT_TERM_NEURONAL_SYNAPTIC_PLASTICITY, ATGCAGT_MIR217, GOBP_MULTICELLULAR_ORGANISMAL_RESPONSE_TO_STRESS, GOBP_CELL_CELL_SIGNALING, NFKB_Q6, GOBP_DETECTION_OF_TEMPERATURE_STIMULUS
GO Biological Process (27): behavioral fear response (GO:0001662), intracellular calcium ion homeostasis (GO:0006874), glutamate receptor signaling pathway (GO:0007215), chemical synaptic transmission (GO:0007268), neuronal action potential (GO:0019228), synaptic transmission, glutamatergic (GO:0035249), receptor clustering (GO:0043113), negative regulation of neuron apoptotic process (GO:0043524), positive regulation of neuron apoptotic process (GO:0043525), regulation of JNK cascade (GO:0046328), regulation of long-term neuronal synaptic plasticity (GO:0048169), regulation of short-term neuronal synaptic plasticity (GO:0048172), modulation of chemical synaptic transmission (GO:0050804), positive regulation of synaptic transmission (GO:0050806), neuron apoptotic process (GO:0051402), negative regulation of synaptic transmission, glutamatergic (GO:0051967), inhibitory postsynaptic potential (GO:0060080), modulation of excitatory postsynaptic potential (GO:0098815), presynaptic modulation of chemical synaptic transmission (GO:0099171), detection of cold stimulus involved in thermoception (GO:0120169), monoatomic ion transport (GO:0006811), calcium-mediated signaling (GO:0019722), monoatomic ion transmembrane transport (GO:0034220), ionotropic glutamate receptor signaling pathway (GO:0035235), regulation of membrane potential (GO:0042391), excitatory postsynaptic potential (GO:0060079), regulation of presynaptic membrane potential (GO:0099505)
GO Molecular Function (16): SNARE binding (GO:0000149), glutamate-gated receptor activity (GO:0004970), extracellularly glutamate-gated ion channel activity (GO:0005234), kainate selective glutamate receptor activity (GO:0015277), glutamate-gated calcium ion channel activity (GO:0022849), PDZ domain binding (GO:0030165), ubiquitin conjugating enzyme binding (GO:0031624), ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), scaffold protein binding (GO:0097110), ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (GO:0099507), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), monoatomic ion channel activity (GO:0005216), glutamate receptor activity (GO:0008066), ligand-gated monoatomic ion channel activity (GO:0015276), signaling receptor activity (GO:0038023)
GO Cellular Component (18): plasma membrane (GO:0005886), dendrite cytoplasm (GO:0032839), kainate selective glutamate receptor complex (GO:0032983), presynaptic membrane (GO:0042734), terminal bouton (GO:0043195), perikaryon (GO:0043204), mossy fiber rosette (GO:0097471), hippocampal mossy fiber to CA3 synapse (GO:0098686), postsynaptic density membrane (GO:0098839), glutamatergic synapse (GO:0098978), ionotropic glutamate receptor complex (GO:0008328), postsynaptic density (GO:0014069), membrane (GO:0016020), axon (GO:0030424), dendrite (GO:0030425), neuronal cell body (GO:0043025), synapse (GO:0045202), postsynaptic membrane (GO:0045211)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Ionotropic activity of kainate receptors | 2 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| chemical synaptic transmission | 3 |
| modulation of chemical synaptic transmission | 3 |
| presynapse | 3 |
| protein binding | 3 |
| glutamate receptor activity | 2 |
| regulation of neuron apoptotic process | 2 |
| neuron apoptotic process | 2 |
| regulation of neuronal synaptic plasticity | 2 |
| regulation of postsynaptic membrane potential | 2 |
| transmitter-gated monoatomic ion channel activity | 2 |
| glutamate-gated receptor activity | 2 |
| synaptic membrane | 2 |
| cellular anatomical structure | 2 |
| asymmetric synapse | 2 |
| neuron projection | 2 |
| behavioral defense response | 1 |
| fear response | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| cell surface receptor signaling pathway | 1 |
| anterograde trans-synaptic signaling | 1 |
| action potential | 1 |
| transmission of nerve impulse | 1 |
| plasma membrane | 1 |
| protein localization to membrane | 1 |
| negative regulation of apoptotic process | 1 |
| positive regulation of apoptotic process | 1 |
| JNK cascade | 1 |
| regulation of MAPK cascade | 1 |
| regulation of trans-synaptic signaling | 1 |
| positive regulation of cell communication | 1 |
| positive regulation of signaling | 1 |
| apoptotic process | 1 |
| synaptic transmission, glutamatergic | 1 |
| negative regulation of synaptic transmission | 1 |
| regulation of synaptic transmission, glutamatergic | 1 |
| chemical synaptic transmission, postsynaptic | 1 |
| regulation of signal transduction | 1 |
| regulation of nervous system process | 1 |
| regulation of membrane potential | 1 |
Protein interactions and networks
STRING
1978 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GRIK2 | DLG4 | P78352 | 991 |
| GRIK2 | GRIK5 | Q16478 | 983 |
| GRIK2 | GRIK4 | Q16099 | 982 |
| GRIK2 | GRIK1 | P39086 | 980 |
| GRIK2 | GRIK3 | Q13003 | 967 |
| GRIK2 | NETO1 | Q8TDF5 | 872 |
| GRIK2 | NETO2 | Q8NC67 | 869 |
| GRIK2 | KLHL24 | Q6TFL4 | 841 |
| GRIK2 | UBE2I | P50550 | 833 |
| GRIK2 | GRM7 | Q14831 | 799 |
| GRIK2 | KARS1 | Q15046 | 795 |
| GRIK2 | SDCBP | O00560 | 795 |
| GRIK2 | PICK1 | Q9NRD5 | 792 |
| GRIK2 | GRIP1 | Q9Y3R0 | 744 |
| GRIK2 | GNB4 | Q9HAV0 | 729 |
IntAct
132 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GRIK2 | GRIK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | DLG3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | TIAM2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| APBA3 | GRIK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | MAST1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | MAGI2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | PDZD7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | APBA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | MAST2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | GRIP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | MPP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | GRID2IP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PICK1 | GRIK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | HTRA4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | LIN7C | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | SNX27 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | WHRN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | PDZRN4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | TAX1BP3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | PATJ | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | MPP7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PDZK1 | GRIK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | DLG4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | PARD3B | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | MAGI1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRIK2 | GOPC | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SCRIB | GRIK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (44): GRIK2 (Affinity Capture-Western), GRIK5 (Affinity Capture-Western), GRIK2 (Affinity Capture-RNA), GRIK2 (Affinity Capture-RNA), PICK1 (Reconstituted Complex), SDCBP (Reconstituted Complex), DLG4 (Reconstituted Complex), GRIP1 (Reconstituted Complex), DLG4 (Affinity Capture-Western), SDCBP (Affinity Capture-Western), PICK1 (Affinity Capture-Western), GRID2 (Affinity Capture-Western), GRIK2 (Affinity Capture-Western), GRIK2 (Affinity Capture-Western), GRIK2 (Affinity Capture-Western)
ESM2 similar proteins: A0A2R8QF68, B1AS29, P19439, P19490, P19491, P19492, P19493, P20262, P22756, P23818, P23819, P26591, P31422, P34299, P39086, P39087, P42260, P42261, P42262, P42263, P42264, P48058, Q01812, Q03445, Q13002, Q13003, Q14832, Q16099, Q16478, Q1ZZH1, Q21415, Q38PU2, Q38PU3, Q38PU4, Q38PU5, Q38PU6, Q38PU7, Q38PU8, Q5IS46, Q5R4M0
Diamond homologs: A0A2R8QF68, A7XY94, B1AS29, E9NA96, P19439, P19490, P19491, P19492, P19493, P20262, P22756, P23818, P23819, P26591, P34299, P35436, P39086, P39087, P42260, P42261, P42262, P42263, P42264, P48058, Q00959, Q01812, Q03445, Q10914, Q12879, Q13002, Q13003, Q16099, Q16478, Q21415, Q38PU2, Q38PU3, Q38PU4, Q38PU5, Q38PU6, Q38PU7
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKACA | “up-regulates activity” | GRIK2 | phosphorylation |
| GRIK2 | up-regulates | Excitatory_synaptic_transmission | |
| “glutamic acid” | “up-regulates activity” | GRIK2 | “chemical activation” |
| GRIK2 | “up-regulates quantity” | calcium(2+) | relocalization |
| GRIK2 | “up-regulates quantity” | D-serine | relocalization |
| SRC | “up-regulates activity” | GRIK2 | phosphorylation |
| PRKN | “down-regulates quantity by destabilization” | GRIK2 | ubiquitination |
| KLHL17 | “down-regulates quantity by destabilization” | GRIK2 | binding |
| “Cullin 3-RBX1-Skp1” | “down-regulates quantity by destabilization” | GRIK2 | polyubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 84 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ras activation upon Ca2+ influx through NMDA receptor | 5 | 51.9× | 2e-06 |
| Unblocking of NMDA receptors, glutamate binding and activation | 5 | 49.4× | 2e-06 |
| Negative regulation of NMDA receptor-mediated neuronal transmission | 5 | 49.4× | 2e-06 |
| Long-term potentiation | 5 | 43.3× | 3e-06 |
| Assembly and cell surface presentation of NMDA receptors | 9 | 41.5× | 6e-11 |
| Neurexins and neuroligins | 10 | 35.8× | 3e-11 |
| Protein-protein interactions at synapses | 6 | 29.0× | 2e-06 |
| RHOB GTPase cycle | 5 | 14.0× | 6e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 11 | 78.9× | 3e-16 |
| protein localization to synapse | 6 | 56.7× | 1e-07 |
| receptor clustering | 7 | 53.9× | 1e-08 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 7 | 42.8× | 4e-08 |
| protein-containing complex assembly | 9 | 12.7× | 3e-06 |
| cell-cell adhesion | 10 | 12.5× | 6e-07 |
| regulation of small GTPase mediated signal transduction | 5 | 8.9× | 6e-03 |
| chemical synaptic transmission | 7 | 6.7× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
306 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 10 |
| Uncertain significance | 201 |
| Likely benign | 53 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (15)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1180451 | NM_021956.5(GRIK2):c.1979C>G (p.Thr660Arg) | Pathogenic |
| 16087 | GRIK2, DEL/INV, EX7-11 | Pathogenic |
| 189252 | NM_021956.5(GRIK2):c.592C>T (p.Arg198Ter) | Pathogenic |
| 870382 | NM_021956.5(GRIK2):c.1979C>A (p.Thr660Lys) | Pathogenic |
| 985841 | NM_021956.5(GRIK2):c.1969G>A (p.Ala657Thr) | Pathogenic |
| 1180452 | NM_021956.5(GRIK2):c.2003T>C (p.Ile668Thr) | Likely pathogenic |
| 1693459 | NM_021956.5(GRIK2):c.1960A>G (p.Asn654Asp) | Likely pathogenic |
| 2503314 | NM_021956.5(GRIK2):c.283+1G>C | Likely pathogenic |
| 2582447 | NM_021956.5(GRIK2):c.355C>T (p.Gln119Ter) | Likely pathogenic |
| 3064934 | NM_021956.5(GRIK2):c.1204-1G>T | Likely pathogenic |
| 3765562 | NM_021956.5(GRIK2):c.571G>T (p.Ala191Ser) | Likely pathogenic |
| 4081438 | NM_021956.5(GRIK2):c.126dup (p.Glu43Ter) | Likely pathogenic |
| 4527140 | NM_021956.5(GRIK2):c.1567C>T (p.Arg523Ter) | Likely pathogenic |
| 4823848 | GRCh37/hg19 6q16.3(chr6:102503205-102503455)x0 | Likely pathogenic |
| 637968 | NM_021956.5(GRIK2):c.808C>T (p.Arg270Ter) | Likely pathogenic |
SpliceAI
2335 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:101454095:G:GT | donor_gain | 1.0000 |
| 6:101399243:G:GT | donor_gain | 0.9900 |
| 6:101399243:G:T | donor_gain | 0.9900 |
| 6:101418596:G:T | donor_gain | 0.9900 |
| 6:101439129:C:G | donor_gain | 0.9900 |
| 6:101475669:G:GT | donor_gain | 0.9900 |
| 6:101475677:A:AG | donor_gain | 0.9900 |
| 6:101475677:A:G | donor_gain | 0.9900 |
| 6:101501139:A:AG | donor_gain | 0.9900 |
| 6:101564789:TGCA:T | donor_gain | 0.9900 |
| 6:101451509:G:GC | acceptor_gain | 0.9800 |
| 6:101457761:A:G | acceptor_gain | 0.9800 |
| 6:101466737:C:T | donor_gain | 0.9800 |
| 6:101483276:G:GT | donor_gain | 0.9800 |
| 6:101483287:C:T | donor_gain | 0.9800 |
| 6:101564790:GCAA:G | donor_gain | 0.9800 |
| 6:101399095:G:GG | donor_gain | 0.9700 |
| 6:101399295:GATTC:G | donor_gain | 0.9700 |
| 6:101454018:G:GT | donor_gain | 0.9700 |
| 6:101501139:A:G | acceptor_gain | 0.9700 |
| 6:101418596:G:GT | acceptor_gain | 0.9600 |
| 6:101466797:G:GT | donor_gain | 0.9600 |
| 6:101466820:TTG:T | donor_gain | 0.9600 |
| 6:101564222:A:AG | acceptor_gain | 0.9600 |
| 6:101451533:T:TA | acceptor_gain | 0.9500 |
| 6:101457756:A:AG | acceptor_gain | 0.9500 |
| 6:101457757:A:G | acceptor_gain | 0.9500 |
| 6:101463577:G:T | acceptor_gain | 0.9500 |
| 6:101505351:T:G | donor_gain | 0.9500 |
| 6:101466798:A:T | donor_gain | 0.9400 |
AlphaMissense
5757 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:101622012:C:A | A60D | 1.000 |
| 6:101626382:T:A | C96S | 1.000 |
| 6:101626382:T:C | C96R | 1.000 |
| 6:101626383:G:A | C96Y | 1.000 |
| 6:101626383:G:C | C96S | 1.000 |
| 6:101626383:G:T | C96F | 1.000 |
| 6:101626384:T:G | C96W | 1.000 |
| 6:101626392:T:C | L99P | 1.000 |
| 6:101626400:G:T | G102W | 1.000 |
| 6:101626418:G:A | G108R | 1.000 |
| 6:101626418:G:C | G108R | 1.000 |
| 6:101626419:G:A | G108E | 1.000 |
| 6:101626462:C:G | C122W | 1.000 |
| 6:101626476:T:A | V127D | 1.000 |
| 6:101626601:T:A | W169R | 1.000 |
| 6:101626601:T:C | W169R | 1.000 |
| 6:101626617:T:A | V174D | 1.000 |
| 6:101676626:T:A | L182H | 1.000 |
| 6:101676626:T:C | L182P | 1.000 |
| 6:101676686:G:C | R202P | 1.000 |
| 6:101676725:T:C | L215P | 1.000 |
| 6:101799658:C:A | A321D | 1.000 |
| 6:101799661:T:C | L322P | 1.000 |
| 6:101799672:G:C | A326P | 1.000 |
| 6:101799735:T:A | C347S | 1.000 |
| 6:101799735:T:C | C347R | 1.000 |
| 6:101799736:G:A | C347Y | 1.000 |
| 6:101799736:G:C | C347S | 1.000 |
| 6:101799737:T:G | C347W | 1.000 |
| 6:101799753:T:A | W353R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000003439 (6:102044504 G>T), RS1000010011 (6:101953385 G>A), RS1000011871 (6:101878742 C>T), RS1000019550 (6:101723785 C>G,T), RS1000023898 (6:102001595 C>G,T), RS1000033262 (6:101505918 A>T), RS1000039625 (6:101548284 G>T), RS1000056485 (6:102001306 T>C), RS1000066063 (6:101946731 A>G), RS1000070476 (6:101835596 G>A,C,T), RS1000071542 (6:101683179 C>T), RS1000082041 (6:101878533 T>C), RS1000084453 (6:101801809 A>G), RS1000091582 (6:101548527 C>G,T), RS1000097775 (6:101962975 T>C)
Disease associations
OMIM: gene MIM:138244 | disease phenotypes: MIM:611092, MIM:619580
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability, autosomal recessive 6 | Definitive | Autosomal recessive |
| neurodevelopmental disorder with impaired language and ataxia and with or without seizures | Strong | Autosomal dominant |
| autosomal recessive non-syndromic intellectual disability | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| complex neurodevelopmental disorder | Moderate | AR |
| complex neurodevelopmental disorder | Definitive | AD |
Mondo (5): intellectual disability, autosomal recessive 6 (MONDO:0012614), intellectual disability (MONDO:0001071), neurodevelopmental disorder with impaired language and ataxia and with or without seizures (MONDO:0859201), lip and oral cavity carcinoma (MONDO:0023644), autosomal recessive non-syndromic intellectual disability (MONDO:0019502)
Orphanet (3): Autosomal recessive non-syndromic intellectual disability (Orphanet:88616), Cerebral visual impairment (Orphanet:447788), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
65 total (30 of 65 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000365 | Hearing impairment |
| HP:0000473 | Torticollis |
| HP:0000486 | Strabismus |
| HP:0000712 | Emotional lability |
| HP:0000718 | Aggressive behavior |
| HP:0000729 | Autistic behavior |
| HP:0000733 | Motor stereotypy |
| HP:0000736 | Short attention span |
| HP:0000739 | Anxiety |
| HP:0000749 | Paroxysmal bursts of laughter |
| HP:0000750 | Delayed speech and language development |
| HP:0000961 | Cyanosis |
| HP:0001188 | Hand clenching |
| HP:0001249 | Intellectual disability |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001256 | Mild intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001266 | Choreoathetosis |
| HP:0001270 | Motor delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001336 | Myoclonus |
| HP:0001344 | Absent speech |
| HP:0002066 | Gait ataxia |
| HP:0002069 | Bilateral tonic-clonic seizure |
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000328_15 | Biochemical measures | 2.000000e-06 |
| GCST000960_9 | Cardiac hypertrophy | 3.000000e-06 |
| GCST001607_5 | Renal function-related traits (eGRFcrea) | 1.000000e-07 |
| GCST001636_2 | Obsessive-compulsive disorder | 3.000000e-06 |
| GCST001762_430 | Obesity-related traits | 5.000000e-06 |
| GCST001838_5 | Palmitic acid (16:0) levels | 2.000000e-07 |
| GCST002599_1 | Longevity (90 years and older) | 5.000000e-08 |
| GCST002945_37 | Emphysema imaging phenotypes | 3.000000e-07 |
| GCST005024_41 | Pursuit maintenance gain | 5.000000e-07 |
| GCST005847_6 | Heart rate response to recovery post exercise (20 sec) | 6.000000e-09 |
| GCST008152_161 | Weight | 7.000000e-06 |
| GCST009439_1 | Age-related cognitive decline (language) (slope of z-scores) | 8.000000e-06 |
| GCST012322_34 | Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder | 5.000000e-08 |
| GCST012484_25 | Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer’s disease | 1.000000e-05 |
| GCST90020024_591 | A body shape index | 3.000000e-09 |
| GCST90020029_1413 | Waist circumference adjusted for body mass index | 1.000000e-08 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0002503 | cardiac hypertrophy |
| EFO:0007626 | emphysema imaging measurement |
| EFO:0008433 | pursuit maintenance gain measurement |
| EFO:0009185 | heart rate response to recovery post exercise |
| EFO:0004338 | body weight |
| EFO:0007710 | cognitive decline measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0005658 | response to selective serotonin reuptake inhibitor |
| EFO:0007659 | APOE carrier status |
| EFO:0007789 | BMI-adjusted waist circumference |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| C567017 | Mental Retardation, Autosomal Recessive 6 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (3): CHEMBL2109241 (PROTEIN COMPLEX GROUP), CHEMBL3038480 (PROTEIN COMPLEX), CHEMBL3683 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 944,840 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL575060 | GLUTAMIC ACID | 3 | 929,756 |
| CHEMBL275040 | KAINIC ACID | 2 | 15,084 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2518224 | GRIK2 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: lgic — Ionotropic glutamate receptors
Most potent curated ligand interactions (7 total), top 7:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| dysiherbaine | Full agonist | 8.92 | pKi |
| [3H]kainate | Full agonist | 8.18 | pKd |
| SYM2081 | Agonist | 8.0 | pKi |
| domoic acid | Full agonist | 7.74 | pKi |
| kainate | Full agonist | 7.49 | pKi |
| LY339434 | Agonist | 4.92 | pKi |
| BPAM344 | Positive | 4.1 | pEC50 |
Binding affinities (BindingDB)
3 measured of 7 human assays (8 total across all organisms); most potent 3 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| SPD 502 | KI | 620 nM |
| NS3763 | KI | 1600 nM |
| LY-293558 | KI | 3200 nM |
ChEMBL bioactivities
127 potent at pChembl≥5 of 177 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.92 | Ki | 1.2 | nM | DYSIHERBAINE |
| 8.22 | Ki | 6.04 | nM | DOMOIC ACID |
| 8.00 | Ki | 10 | nM | 2S,4R-4-METHYLGLUTAMATE |
| 7.74 | Ki | 18.3 | nM | DOMOATE |
| 7.53 | Ki | 29.8 | nM | CHEMBL121741 |
| 7.50 | Ki | 32 | nM | KAINIC ACID |
| 7.50 | Ki | 31.7 | nM | CHEMBL431839 |
| 7.49 | Ki | 32.4 | nM | KAINIC ACID |
| 7.42 | Ki | 38.4 | nM | CHEMBL120003 |
| 7.39 | Ki | 41.1 | nM | CHEMBL332334 |
| 7.32 | Ki | 48 | nM | CHEMBL59284 |
| 7.30 | Ki | 50 | nM | CHEMBL1234118 |
| 7.28 | Ki | 53 | nM | KAINIC ACID |
| 7.26 | Ki | 54.3 | nM | CHEMBL120785 |
| 7.24 | Ki | 57.4 | nM | CHEMBL333015 |
| 7.23 | Ki | 59 | nM | CHEMBL59284 |
| 7.16 | Ki | 70 | nM | CHEMBL13076 |
| 7.11 | IC50 | 77 | nM | KAINIC ACID |
| 7.08 | Ki | 82.2 | nM | CHEMBL332467 |
| 7.04 | Ki | 90.6 | nM | CHEMBL121113 |
| 7.03 | Ki | 93.5 | nM | CHEMBL332168 |
| 6.97 | Ki | 107.8 | nM | CHEMBL334119 |
| 6.96 | Ki | 110 | nM | CHEMBL12696 |
| 6.96 | Ki | 110 | nM | CHEMBL273675 |
| 6.91 | Ki | 122.5 | nM | CHEMBL332818 |
| 6.90 | Ki | 126.2 | nM | CHEMBL332114 |
| 6.89 | Ki | 130 | nM | CHEMBL5591383 |
| 6.89 | Ki | 129.3 | nM | CHEMBL121514 |
| 6.88 | Ki | 131.5 | nM | CHEMBL120753 |
| 6.88 | Ki | 130.6 | nM | CHEMBL333790 |
| 6.84 | Ki | 145.6 | nM | CHEMBL120450 |
| 6.83 | Ki | 146.8 | nM | CHEMBL120288 |
| 6.83 | Ki | 146.6 | nM | CHEMBL122507 |
| 6.80 | Ki | 160 | nM | CHEMBL59551 |
| 6.77 | Ki | 169.3 | nM | CHEMBL121461 |
| 6.68 | Ki | 209.6 | nM | CHEMBL368275 |
| 6.58 | Ki | 262.7 | nM | CHEMBL331339 |
| 6.56 | Ki | 275.3 | nM | CHEMBL431657 |
| 6.54 | Ki | 288 | nM | CHEMBL118502 |
| 6.47 | Ki | 339 | nM | CHEMBL58808 |
| 6.39 | Ki | 410 | nM | CHEMBL268284 |
| 6.35 | Ki | 450 | nM | CHEMBL38499 |
| 6.30 | Ki | 500 | nM | CHEMBL61697 |
| 6.25 | Ki | 559 | nM | CHEMBL294683 |
| 6.21 | Ki | 610 | nM | CHEMBL13076 |
| 6.18 | Ki | 663.3 | nM | CHEMBL123006 |
| 6.18 | Ki | 667 | nM | CHEMBL334024 |
| 6.16 | EC50 | 700 | nM | KAINIC ACID |
| 6.16 | IC50 | 700 | nM | CHEMBL3104225 |
| 6.16 | Ki | 700 | nM | CHEMBL84142 |
PubChem BioAssay actives
101 with measured affinity, of 408 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R,3aR,6S,7R,7aR)-2-[(2S)-2-amino-2-carboxyethyl]-6-hydroxy-7-(methylamino)-3,3a,5,6,7,7a-hexahydrofuro[3,2-b]pyran-2-carboxylic acid | 1325015: Displacement of [3H]kianic acid from recombinant GluK2 kainate receptor (unknown origin) expressed in HEK293 cell membranes measured after 1 hr | ki | 0.0012 | uM |
| (2S,3S,4S)-4-[(2Z,4E,6R)-6-carboxyhepta-2,4-dien-2-yl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 2114774: Displacement of [3H](2S, 4R)-4-MeGlu (SYM-2081) from GluK2 (unknown origin) | ki | 0.0060 | uM |
| (2S,4R)-2-amino-4-methylpentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.0100 | uM |
| (3R,4E,6E)-7-[4,5-bis(1-hydroxyethenyl)pyrrolidin-3-yl]-3-methylocta-1,4,6-trien-2-ol | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0183 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-(1-phenylethenyl)pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0298 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-chlorophenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0317 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-prop-1-en-2-ylpyrrolidine-2-carboxylic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.0320 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-fluorophenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0384 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-methylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0411 | uM |
| (2S,4R)-2-amino-4-[(E)-3-(2-methoxyphenyl)prop-2-enyl]pentanedioic acid | 93267: Compound was tested for binding affinity against human Ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]-kainate as radioligand | ki | 0.0480 | uM |
| (3S,4aR,6S,8aR)-6-[[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl]-1,2,3,4,4a,5,6,7,8,8a-decahydroisoquinoline-3-carboxylic acid | 1325319: Displacement of [3H]-kainate from human recombinant GluK2 receptor expressed in HEK293 cell membranes after 60 mins | ki | 0.0500 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-fluoro-3-methylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0543 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-methoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0574 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-ethylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0822 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-phenylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0906 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-methoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.0935 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(3,4-dimethylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1078 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-methylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1225 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-[4-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1262 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-[3-methyl-4-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1293 | uM |
| (2S,3S,4S)-4-[(2Z,5E)-6-carboxyhepta-2,5-dien-2-yl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 2114776: Displacement of [3H]-kainic acid from GluR6 (unknown origin) expressed in Sf9 cells membrane | ki | 0.1300 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-phenylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1306 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-prop-1-en-2-ylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1315 | uM |
| (2S,3S,4S)-4-[1-(4-butylphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1456 | uM |
| (2S,3S,4S)-4-[1-(4-butoxyphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1466 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-propylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1468 | uM |
| (2S,4R)-2-amino-4-prop-2-ynylpentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.1600 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(3,5-dimethylphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.1693 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-phenoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.2096 | uM |
| (2S,3S,4S)-4-[1-(4-tert-butylphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.2627 | uM |
| (2S,3S,4S)-4-[1-(3-butoxyphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.2753 | uM |
| (2S,3S,4S)-4-[1-(4-but-1-en-2-ylphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.2880 | uM |
| (2S,4R)-2-amino-4-[(Z)-3-phenylprop-2-enyl]pentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.3390 | uM |
| (2S)-2-amino-4-methylidenepentanedioic acid | 93265: Binding affinity of compound was determined against Ionotropic glutamate receptor ionotropic kainate 2 using cell membranes prepared from HEK293 cells | ki | 0.4500 | uM |
| (2S,4R)-2-amino-4-[(E)-2-methyl-3-phenylprop-2-enyl]pentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.5000 | uM |
| (2S,4R)-2-amino-4-[(E)-3-(4-fluorophenyl)prop-2-enyl]pentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.5590 | uM |
| 2-[7-[3-[[(4-nitrophenyl)carbamoylamino]methyl]pyrrol-1-yl]-2,3-dioxo-6-(trifluoromethyl)-4H-quinoxalin-1-yl]acetic acid | 75679: Binding affinity for human GluR6 expressed in HEK293 cells using [3]H-kainate | ki | 0.6100 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-methyl-4-pentoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.6633 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-[3-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 0.6670 | uM |
| 1-ethyl-5-methoxy-2-(4-methoxyphenyl)-3-methylindole | 1063863: Displacement of [3H]-kainate from GluK2 receptor (unknown origin) | ic50 | 0.7000 | uM |
| (2S,4S)-2-amino-4-prop-2-ynylpentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 0.8230 | uM |
| N-[7-fluoro-2,3-dioxo-6-(trifluoromethyl)-4H-quinoxalin-1-yl]-2-hydroxybenzamide | 1859139: Binding affinity to GluK2 receptor (unknown origin) | ki | 0.9080 | uM |
| (2S,4R)-2-amino-4-(3-phenylprop-2-ynyl)pentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 1.0000 | uM |
| glutamic acid | 93265: Binding affinity of compound was determined against Ionotropic glutamate receptor ionotropic kainate 2 using cell membranes prepared from HEK293 cells | ki | 1.1060 | uM |
| (2S,4R)-2-amino-4-[(E)-3-(3-chlorophenyl)prop-2-enyl]pentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 1.1320 | uM |
| 3-(6-nitro-2,3-dioxo-7-pyrrol-1-yl-4H-quinoxalin-1-yl)propanoic acid | 75679: Binding affinity for human GluR6 expressed in HEK293 cells using [3]H-kainate | ki | 1.2000 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-[3-methoxy-4-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 1.2840 | uM |
| (2S,3S,4S)-3-(carboxymethyl)-4-[1-[4-(5-phenylpentoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid | 93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2 | ki | 1.2957 | uM |
| 2-[6-nitro-2,3-dioxo-7-[3-[[4-(2-phenylethyl)piperazin-1-yl]methyl]pyrrol-1-yl]-4H-quinoxalin-1-yl]acetic acid | 75679: Binding affinity for human GluR6 expressed in HEK293 cells using [3]H-kainate | ki | 1.4000 | uM |
| (2S,4R)-2-amino-4-[(E)-3-(2-chlorophenyl)prop-2-enyl]pentanedioic acid | 93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligand | ki | 1.4040 | uM |
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, decreases methylation | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| Nickel | decreases expression | 2 |
| Valproic Acid | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| zinc chloride | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| abrine | increases expression | 1 |
| bisphenol S | affects cotreatment, increases methylation | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Benzoates | decreases activity, affects binding | 1 |
| Cannabidiol | increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Endosulfan | increases expression | 1 |
| Estradiol | affects expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Thimerosal | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Zinc | increases expression | 1 |
| Citalopram | affects response to substance | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
ChEMBL screening assays
92 unique, capped per target: 66 binding, 26 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL6140042 | Binding | Inhibition of kainate receptor (unknown origin) expressed in Xenopus oocytes at 5 uM by radioligand binding assay | Thienopyrimidinone Derivatives as a GluN2B/C/D Biased, Positive Allosteric Modulator of the N-Methyl-d-Aspartate Receptor. — J Med Chem |
| CHEMBL1226258 | Functional | Agonist activity at iGluR6 L439C mutant expressed in human HEK293 cells assessed as increase in intracellular Ca2+ levels by FURA-2-M staining based fluorimetric method | Allosteric control of an ionotropic glutamate receptor with an optical switch. — Nat Chem Biol |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1JQ | PrecisION hGluR6-HEK | Transformed cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT01418118 | PHASE4 | COMPLETED | Assessment of the Effects of Pressors on Graft Blood Flow After Free Tissue Transfer Surgery |
| NCT03017053 | PHASE4 | UNKNOWN | The Optimal Neck Treatments Strategy of Early Oral Cancer Based on Adverse Pathological Factor |
| NCT03684707 | PHASE4 | UNKNOWN | Cancer Chemoprevention by Metformin Hydrochloride Compared to Placebo in Oral Potentially Malignant Lesions |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00158652 | PHASE3 | COMPLETED | Accelerated Radiotherapy and Concomitant Chemo-radiotherapy in HNSCC |
| NCT00158678 | PHASE3 | COMPLETED | IMRT Plus Cisplatin Versus Conventional Radiotherapy Plus Cisplatin in Stage III-IV HNSCC |
| NCT00402779 | PHASE3 | COMPLETED | Erlotinib Prevention of Oral Cancer (EPOC) |
| NCT00655421 | PHASE3 | UNKNOWN | Oral Cancer Screening in Mumbai, India by Primary Health Care Workers |
| NCT00750503 | PHASE3 | COMPLETED | Workplace Tobacco Cessation And Oral Cancer Screening Study |
| NCT00964977 | PHASE3 | COMPLETED | Effectiveness of Adjuvant Radiotherapy in Small Oropharyngeal Squamous Cell Cancer and Single Lymph Node Metastasis. |
| NCT01039298 | PHASE3 | UNKNOWN | Efficacy of Optically-guided Surgery in the Management of Early-staged Oral Cancer - COOLS TRIAL |
| NCT03685409 | PHASE3 | UNKNOWN | Cancer Chemoprevention by Metformin Hydrochloride in Oral Potentially Malignant Lesions |
| NCT05721755 | PHASE3 | ACTIVE_NOT_RECRUITING | Combining Radiation Therapy With Immunotherapy for the Treatment of Metastatic Squamous Cell Carcinoma of the Head and Neck |
| NCT06589804 | PHASE3 | RECRUITING | Testing the Addition of Anti-Cancer Drug, Cetuximab, to Standard of Care Treatment (Pembrolizumab) for Returning or Spreading Head and Neck Cancer After Previous Treatment |
| NCT06737822 | PHASE3 | RECRUITING | Upfront Surgery Vs Induction Chemotherapy Followed By Surgery In Oral Cancers: |
| NCT07402538 | PHASE3 | NOT_YET_RECRUITING | Surgery With or Without Neoadjuvant Treatment of SBRT Plus Chemoimmunotherapy in Resectable Locally Advanced Oral and HPV-unrelated Oropharyngeal Squamous Cell Carcinoma |
| NCT07441681 | PHASE3 | NOT_YET_RECRUITING | Comparing Radiation Plus Cetuximab to Radiation Plus Chemotherapy in People With Head and Neck Cancer Who Cannot Receive Cisplatin |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT00330382 | PHASE2 | COMPLETED | Bowman-Birk Inhibitor Concentrate in Preventing Cancer in Patients With Oral Leukoplakia |
| NCT00400205 | PHASE2 | TERMINATED | Study of Induction Docetaxel, Cisplatin and 5-Fluorouracil |
| NCT00933387 | PHASE2 | COMPLETED | A Study of Neoadjuvant Bio-C/T Followed by Concurrent Bio-R/T in High-risk Locally Advanced Oral Squamous Cell Carcinoma |
| NCT01440270 | PHASE2 | COMPLETED | Neo-adjuvant Erbitux-based Chemotherapy for Locally Advanced Oral/Oropharyngeal Cancer |
| NCT01733797 | PHASE2 | COMPLETED | Trismus Trial of Therabite vs Wooden Spatula in Head and Neck Cancer Patients |
| NCT02734537 | PHASE2 | RECRUITING | Radiation Therapy With or Without Cisplatin in Treating Patients With Stage III-IVA Squamous Cell Carcinoma of the Head and Neck Who Have Undergone Surgery |
| NCT02960724 | PHASE2 | UNKNOWN | uPAR PET/CT for Staging Advanced and Localised Oral and Oropharyngeal Cancer |
| NCT03008694 | PHASE2 | UNKNOWN | Effect of FDG-PET/CT for Simulation and Radiation Treatment Planning in Oral Cancer Patients |
| NCT03174275 | PHASE2 | ACTIVE_NOT_RECRUITING | Carboplatin, Nab-Paclitaxel, Durvalumab Before Surgery and Adjuvant Therapy in Head and Neck Squamous Cell Carcinoma |
| NCT03383094 | PHASE2 | ACTIVE_NOT_RECRUITING | Chemoradiation vs Immunotherapy and Radiation for Head and Neck Cancer |
| NCT03529422 | PHASE2 | ACTIVE_NOT_RECRUITING | Durvalumab With Radiotherapy for Adjuvant Treatment of Intermediate Risk SCCHN |
| NCT04191460 | PHASE2 | RECRUITING | Fluorescence-guided Surgery Using cRGD-ZW800-1 in Oral Cancer |
| NCT04251949 | PHASE2 | COMPLETED | Evaluation of the Photobiomodulation Using LED Lamp for Curative Treatment of Radio-induced Mucositis. |
| NCT04541355 | PHASE2 | COMPLETED | Sodium Thiosulfate in Preventing Ototoxicity for Squamous Cell Cancer Patients Undergoing Chemoradiation With Cisplatin |
| NCT04862650 | PHASE2 | ACTIVE_NOT_RECRUITING | Cemiplimab, Low-Dose Paclitaxel and Carboplatin for the Treatment of Recurrent/Metastatic Squamous Cell Carcinoma of the Head and Neck |
Related Atlas pages
- Associated diseases: intellectual disability, autosomal recessive 6, neurodevelopmental disorder with impaired language and ataxia and with or without seizures, autosomal recessive non-syndromic intellectual disability, complex neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive non-syndromic intellectual disability, cerebral amyloid angiopathy, intellectual disability, autosomal recessive 6, lip and oral cavity carcinoma, neurodevelopmental disorder with impaired language and ataxia and with or without seizures