GRIK2

gene
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Also known as GluK2MRT6GluR-6EAA4GLUK6

Summary

GRIK2 (glutamate ionotropic receptor kainate type subunit 2, HGNC:4580) is a protein-coding gene on chromosome 6q16.3, encoding Glutamate receptor ionotropic, kainate 2 (Q13002). Ionotropic glutamate receptor that functions as a cation-permeable ligand-gated ion channel, gated by L-glutamate and the glutamatergic agonist kainic acid.

Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalian brain and are activated in a variety of normal neurophysiologic processes. This gene product belongs to the kainate family of glutamate receptors, which are composed of four subunits and function as ligand-activated ion channels. The subunit encoded by this gene is subject to RNA editing at multiple sites within the first and second transmembrane domains, which is thought to alter the structure and function of the receptor complex. Alternatively spliced transcript variants encoding different isoforms have also been described for this gene. Mutations in this gene have been associated with autosomal recessive cognitive disability.

Source: NCBI Gene 2898 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): complex neurodevelopmental disorder (Definitive, ClinGen) — +3 more curated relationships
  • GWAS associations: 16
  • Clinical variants (ClinVar): 306 total — 5 pathogenic, 10 likely-pathogenic
  • Phenotypes (HPO): 65
  • Druggable target: yes — 2 molecules with ChEMBL bioactivity
  • Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
  • MANE Select transcript: NM_021956

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:4580
Approved symbolGRIK2
Nameglutamate ionotropic receptor kainate type subunit 2
Location6q16.3
Locus typegene with protein product
StatusApproved
AliasesGluK2, MRT6, GluR-6, EAA4, GLUK6
Ensembl geneENSG00000164418
Ensembl biotypeprotein_coding
OMIM138244
Entrez2898

Gene structure

Transcript identifiers

Ensembl transcripts: 41 — 18 retained_intron, 11 protein_coding, 8 nonsense_mediated_decay, 4 protein_coding_CDS_not_defined

ENST00000358361, ENST00000369134, ENST00000369137, ENST00000369138, ENST00000413795, ENST00000421544, ENST00000436862, ENST00000455610, ENST00000487161, ENST00000487395, ENST00000681975, ENST00000682039, ENST00000682052, ENST00000682090, ENST00000682115, ENST00000682222, ENST00000682261, ENST00000682312, ENST00000682328, ENST00000682716, ENST00000682823, ENST00000682962, ENST00000683054, ENST00000683208, ENST00000683215, ENST00000683264, ENST00000683298, ENST00000683546, ENST00000683618, ENST00000683747, ENST00000683774, ENST00000683806, ENST00000683903, ENST00000683913, ENST00000684027, ENST00000684068, ENST00000684185, ENST00000684279, ENST00000684380, ENST00000684491, ENST00000684518

RefSeq mRNA: 3 — MANE Select: NM_021956 NM_001166247, NM_021956, NM_175768

CCDS: CCDS5048, CCDS5049, CCDS55045

Canonical transcript exons

ENST00000369134 — 17 exons

ExonStartEnd
ENSE00001084208101799648101799791
ENSE00001175424101686180101686353
ENSE00001175433101682553101682606
ENSE00001175441101676623101676804
ENSE00001175451101626380101626637
ENSE00001310137102055330102055580
ENSE00001318693101859287101859493
ENSE00001319383101818370101818483
ENSE00001327598101802331101802438
ENSE00001358806102035341102035566
ENSE00001609672101928415101928632
ENSE00001634244101889640101889863
ENSE00001773416101924601101924719
ENSE00003501564101621949101622116
ENSE00003665433102068347102070083
ENSE00003834743101398985101399392
ENSE00003907970101393708101393837

Expression profiles

Bgee: expression breadth ubiquitous, 213 present calls, max score 98.27.

FANTOM5 (CAGE): breadth broad, TPM avg 2.3504 / max 193.8676, expressed in 194 samples.

FANTOM5 promoters (12 alternative TSS)

Promoter IDTPM avgSamples expressed
690045.5778770
690030.9478324
690060.9410117
690110.5770113
690120.264389
690130.148173
690100.112462
690380.106844
690020.075336
2041150.054643

Top tissues by expression

281 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
cerebellar vermisUBERON:000472098.27gold quality
cerebellar cortexUBERON:000212996.59gold quality
cerebellar hemisphereUBERON:000224596.56gold quality
cerebellumUBERON:000203796.43gold quality
right hemisphere of cerebellumUBERON:001489096.35gold quality
middle temporal gyrusUBERON:000277195.94gold quality
paraflocculusUBERON:000535195.40gold quality
Brodmann (1909) area 23UBERON:001355493.37gold quality
Brodmann (1909) area 10UBERON:001354192.17gold quality
cortical plateUBERON:000534391.71gold quality
orbitofrontal cortexUBERON:000416790.54gold quality
superior frontal gyrusUBERON:000266189.99gold quality
entorhinal cortexUBERON:000272889.89gold quality
Brodmann (1909) area 46UBERON:000648389.05gold quality
endothelial cellCL:000011588.76gold quality
right frontal lobeUBERON:000281088.74gold quality
postcentral gyrusUBERON:000258188.60gold quality
buccal mucosa cellCL:000233687.97gold quality
frontal poleUBERON:000279587.94gold quality
parietal lobeUBERON:000187287.87gold quality
sural nerveUBERON:001548887.75gold quality
trigeminal ganglionUBERON:000167587.35gold quality
dorsal motor nucleus of vagus nerveUBERON:000287087.33gold quality
Brodmann (1909) area 9UBERON:001354087.20gold quality
primary visual cortexUBERON:000243686.89gold quality
cingulate cortexUBERON:000302786.89gold quality
dorsolateral prefrontal cortexUBERON:000983486.87gold quality
anterior cingulate cortexUBERON:000983586.84gold quality
cerebral cortexUBERON:000095686.69gold quality
temporal lobeUBERON:000187186.60gold quality

Single-cell (SCXA)

Detected in 5 experiment(s), a significant marker in 5.

ExperimentMarker?Max mean expression
E-HCAD-35yes5238.46
E-HCAD-25yes2683.31
E-HCAD-5yes12.97
E-GEOD-137537yes6.05
E-ANND-3yes5.30

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

176 targeting GRIK2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-126-5P100.0072.713180
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-8485100.0077.574731
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-656-3P100.0072.152788
HSA-MIR-4455100.0065.481587
HSA-MIR-4768-5P100.0069.492861
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-4262100.0073.263931
HSA-MIR-4425100.0067.591049
HSA-MIR-33A-5P99.9968.621055
HSA-MIR-33B-5P99.9968.581062
HSA-MIR-366299.9973.825684
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-3692-3P99.9870.272139
HSA-MIR-569699.9872.364487
HSA-MIR-1213699.9872.815713
HSA-MIR-477599.9875.006394
HSA-MIR-4482-3P99.9872.503147
HSA-MIR-548N99.9871.944170
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-50799.9770.111915
HSA-MIR-302C-5P99.9772.563642
HSA-MIR-314899.9775.066478
HSA-MIR-55799.9670.011640
HSA-MIR-548AJ-3P99.9673.385345

Functional genomics

ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • Linkage and association of the glutamate receptor 6 gene with autism (PMID:11920157)
  • Specific alleles in GluR6 and CA150 locus were only observed in HD patients. (PMID:12821179)
  • describes the time course of the open-channel form of the receptor as a function of glutamate concentration (PMID:14567698)
  • Using three single nucleotide polymorphisms in GRIK2 and one in GRIK3, we found no evidence for association with Obssessive-Compulsive disorder in case-control or family-based analyses. (PMID:15094479)
  • In this study, the maternal transmission disequilibrium of the glutamate receptor GRIK2 in schizophrenia. (PMID:15305151)
  • The modifier effect is actually due to the TAA repeat itself, possibly via a functional consequence on the GRIK2 mRNA. (PMID:16959037)
  • Our data on altered functional properties of GluR6(M836I) provide a functional basis for the postulated linkage of GluR6 to autism. (PMID:17167233)
  • phosphorylation of the C-terminal tail of GluR6 by PKA leads to potentiation of whole cell response (PMID:17379418)
  • These results suggest a potential association between GRIK2 and autism in the Korean population. (PMID:17428563)
  • Mutations of GluR6 are unlikely to be associated with autism in the Indian population. (PMID:17712621)
  • report a complex mutation in the ionotropic glutamate receptor 6 gene (GRIK2, also called “GLUR6”) that cosegregates with moderate-to-severe nonsyndromic autosomal recessive mental retardation in a large, consanguineous Iranian family (PMID:17847003)
  • Overall, our data indicate that hGluR6c might have unique properties in non-nervous cells and in the first stages of CNS development. (PMID:18289788)
  • results support the involvement of genes GRIA3 and GRIK2 in antidepressant treatment-emergent suicidal ideation (PMID:18593792)
  • the apo state of GluR6 undergoes a cleft closure of 29-30 degrees upon binding full agonists, one of the largest observed in the glutamate receptor family. (PMID:18658129)
  • Mutations to GLUR6 binding pocket that selectively affect domoate binding are freported. (PMID:18664604)
  • nonconserved residues in GluR6 define the size of the agonist-binding pocket, exerting a steric influence on the bound agonist and the extent of binding-domain closure (PMID:18690046)
  • GluR6 C-terminal domain KRIP6 regulates kainate receptors by inhibiting PICK1 modulation via competition or a mutual blocking effect (PMID:18692513)
  • in silico ligand-docking predicted that most partial agonists select for the closed and not, as expected, the open or intermediate conformations of the GluK2 agonist binding domain. (PMID:19225180)
  • Results indicate that ions can contribute substantial free energy to active state stabilization in GluR6, and provide quantitative measurements of the energetic consequences of allosteric ion binding to a ligand-gated ion channel. (PMID:19617541)
  • phosphorylation of PKC sites on GluR6 regulates surface expression of GluR6 at distinct intracellular trafficking pathways (PMID:19920140)
  • Spliced variants of ionotropic glutamate receptor GluR6 is associated with astrocytoma. (PMID:20230879)
  • This study supports previously reported findings of association between proximal GRIK2 single nucleotide polymorphism and obsessive-compulsive disorder in a comprehensive evaluation of the gene (PMID:20370803)
  • human GluK2 is a slowly activating channel but more sensitive to glutamate, as compared to the rat ortholog; the M867I mutation does not affect the rate the equilibrium constants of the channel opening but does slow down the channel desensitization rate (PMID:20863077)
  • Genotyping and linkage analysis excluded linkage of the GRIK2 gene and TUSC3 gene with mental retardation. (PMID:21557188)
  • Convergent functional genomics allowed the identification of novel candidate genes, GRIK2 and NPAS2, involved in glutamatergic neurotransmission and the circadian rhythm, respectively, that are potentially associated with CFS. (PMID:21912186)
  • The ACAG haplotype in the 13th haplotype block of the GRIK2 gene was associated with somatic anxiety. (PMID:22429480)
  • Comprehensive analytical methods applied to a much larger sample than in previous studies do not support a role for GRIK2 as a genetic modifier of age at onset of clinical symptoms in Huntington’s disease. (PMID:22771793)
  • Eight chromosome 6 SNPs, having the most significant differences, were delineated: rs10499298, rs10499299, rs17827966, rs1224329, rs1150790, rs713050, rs2518344 and rs487083; all were associated with genes GRIK2. (PMID:23037145)
  • Kainate receptor GluK2a post-translational modifications differentially regulate association with 4.1N to control activity-dependent receptor endocytosis (PMID:23400781)
  • we found no association between rs1556995 in GRIK2 and clozapine-induced obsessive-compulsive (OC) symptoms, implying that that GRIK2 may not play a role in the development of OC symptoms in schizophrenia patients (PMID:23660601)
  • Crosslinking the ligand-binding domain dimer interface locks kainate receptors out of the main open state. (PMID:23713029)
  • 14-3-3 proteins are an important regulator of GluK2a-containing KARs and may contribute to the slow decay kinetics of native KAR-EPSCs. (PMID:23861400)
  • This study found in GRIK2 (glutamate receptor, ionotropic kainate 2) was most significant and also showed significant correlations with gene expression. (PMID:24662927)
  • This study showed that Gluk2 association with obsessive-compulsive disorder. (PMID:24821223)
  • The present study reveals an additional mechanism for the regulation of GluK2-containing kainate receptors by Src family kinases, which may be of pathological significance in ischemic stroke. (PMID:25201974)
  • Parkin interacts with the kainate receptor GluK2 subunit and regulates KAR function. (PMID:25316086)
  • High risk genetic markers of paranoid schizophrenia were GRIK2*ATG and GRIK2*TGG in Tatars. (PMID:25842862)
  • Study demonstrates that co-assembly of recombinant kainate receptors (GluK1 and GluK2) with the Neto1 and Neto2 auxiliary subunits alters their onset and recovery from desensitization in a subunit-dependent manner (PMID:26277340)
  • In the Han population in Central China, the polymorphisms of SNP rs9390754 in the GRIK2 gene may be associated with epilepsy susceptibility. (PMID:27324535)
  • TTBK2 down-regulates GluK2 activity by decreasing the receptor protein abundance in the cell membrane via RAB5-dependent endocytosis. (PMID:27607061)

Cross-species orthologs

42 orthologs

OrganismSymbolGene ID
danio_rerioGRIK2ENSDARG00000113771
mus_musculusGrik2ENSMUSG00000056073
rattus_norvegicusGrik2ENSRNOG00000000368
drosophila_melanogasterGluRIAFBGN0004619
drosophila_melanogasterGluRIIAFBGN0004620
drosophila_melanogasterGluRIIBFBGN0020429
drosophila_melanogasterclumsyFBGN0026255
drosophila_melanogasterGluRIIDFBGN0028422
drosophila_melanogasterIr7bFBGN0029965
drosophila_melanogasterIr7cFBGN0029966
drosophila_melanogasterIr7gFBGN0029968
drosophila_melanogasterIr25aFBGN0031634
drosophila_melanogasterIr60aFBGN0034994
drosophila_melanogasterIr64aFBGN0035604
drosophila_melanogasterIr68aFBGN0036150
drosophila_melanogasterIr68bFBGN0036250
drosophila_melanogasterIr75aFBGN0036757
drosophila_melanogasterIr75dFBGN0036829
drosophila_melanogasterIr76bFBGN0036937
drosophila_melanogasterIr84aFBGN0037501
drosophila_melanogasterIr85aFBGN0037630
drosophila_melanogasterIr92aFBGN0038789
drosophila_melanogasterGrikFBGN0038840
drosophila_melanogasterEkarFBGN0039916
drosophila_melanogasterCG11155FBGN0039927
drosophila_melanogasterIr41aFBGN0040849
drosophila_melanogasterGluRIICFBGN0046113
drosophila_melanogasterGluRIIEFBGN0051201
drosophila_melanogasterNmdar2FBGN0053513
drosophila_melanogasterIr7eFBGN0259189
drosophila_melanogasterIr94dFBGN0259193
drosophila_melanogasterIr93aFBGN0259215
drosophila_melanogasterIr40aFBGN0259683
drosophila_melanogasterIr76aFBGN0260874
drosophila_melanogasterIr75cFBGN0261401
drosophila_melanogasterIr75bFBGN0261402
drosophila_melanogasterGluRIBFBGN0264000
caenorhabditis_elegansWBGENE00001612
caenorhabditis_elegansglr-3WBGENE00001614
caenorhabditis_elegansWBGENE00001618
caenorhabditis_elegansWBGENE00003775
caenorhabditis_elegansWBGENE00012190

Paralogs (17): GRIN2D (ENSG00000105464), GRIK5 (ENSG00000105737), GRIN3B (ENSG00000116032), GRIA2 (ENSG00000120251), GRIA3 (ENSG00000125675), GRIK4 (ENSG00000149403), GRID2 (ENSG00000152208), GRIA4 (ENSG00000152578), GRIA1 (ENSG00000155511), GRIN2C (ENSG00000161509), GRIK3 (ENSG00000163873), GRIK1 (ENSG00000171189), GRIN1 (ENSG00000176884), GRID1 (ENSG00000182771), GRIN2A (ENSG00000183454), GRIN3A (ENSG00000198785), GRIN2B (ENSG00000273079)

Protein

Protein identifiers

Glutamate receptor ionotropic, kainate 2Q13002 (reviewed: Q13002)

Alternative names: Excitatory amino acid receptor 4, Glutamate receptor 6

All UniProt accessions (14): A0A0A0MRL4, A0A804HHV9, A0A804HI04, A0A804HIH6, A0A804HKP5, A0A804HKS7, A0A804HKU0, A0A804HL10, A0A8D9PH75, Q13002, F8WEZ8, G3XAD3, H7BZX7, H7C2P5

UniProt curated annotations — full annotation on UniProt →

Function. Ionotropic glutamate receptor that functions as a cation-permeable ligand-gated ion channel, gated by L-glutamate and the glutamatergic agonist kainic acid. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformational change leading to the opening of the cation channel, converting the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. Modulates cell surface expression of NETO2. In association with GRIK3, involved in presynaptic facilitation of glutamate release at hippocampal mossy fiber synapses. Independent of its ionotropic glutamate receptor activity, acts as a thermoreceptor conferring sensitivity to cold temperatures. Functions in dorsal root ganglion neurons.

Subunit / interactions. Homotetramer; formed by the dimerization of dimers via its N-terminal domain. Assembles into a kainate-gated homomeric channel that does not bind AMPA. Can form functional heteromeric receptors with GRIK5. Can form functional heteromeric receptors with GRIK3 and GRIK4. Interacts with DLG4. Interacts with NETO2. Interacts (via C-terminus) with KLHL17 (via kelch repeats); the interaction targets GRIK2 for degradation via ubiquitin-proteasome pathway.

Subcellular location. Cell membrane. Postsynaptic cell membrane.

Tissue specificity. Expression is higher in cerebellum than in cerebral cortex.

Post-translational modifications. Sumoylation mediates kainate receptor-mediated endocytosis and regulates synaptic transmission. Sumoylation is enhanced by PIAS3 and desumoylated by SENP1. Ubiquitinated. Ubiquitination regulates the GRIK2 levels at the synapse by leading kainate receptor degradation through proteasome. Phosphorylated by PKC at Ser-868 upon agonist activation, this directly enhance sumoylation.

Disease relevance. Intellectual developmental disorder, autosomal recessive 6 (MRT6) [MIM:611092] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRT6 patients display mild to severe intellectual disability and psychomotor development delay in early childhood. Patients do not have neurologic problems, congenital malformations, or facial dysmorphism. Body height, weight, and head circumference are normal. The disease is caused by variants affecting the gene represented in this entry. Neurodevelopmental disorder with impaired language and ataxia and with or without seizures (NEDLAS) [MIM:619580] An autosomal dominant disorder characterized by axial hypotonia and global developmental delay. Affected individuals show impaired intellectual development, delayed walking, poor speech, and behavioral abnormalities. Some patients have a more severe phenotype with early-onset seizures resembling epileptic encephalopathy, inability to walk or speak, and hypomyelination on brain imaging. The disease is caused by variants affecting the gene represented in this entry.

Activity regulation. Ionotropic glutamate receptor activity is promoted by positive allosteric modulators that inhibit receptor desensitization. Ionotropic glutamate receptor activity is inhibited by ion channel blockers.Cold receptor activity is activated by temperatures between 10-19 degrees Celsius.

Domain organisation. The gate of the ion channel is formed by four transmembrane M3 helices and it opens upon stimulation by positive allosteric modulators.

Miscellaneous. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists. This receptor binds domoate > kainate > quisqualate > 6-cyano-7-nitroquinoxaline-2,3-dione > L-glutamate = 6,7-dinitroquinoxaline-2,3-dione > dihydrokainate.

Similarity. Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. GRIK2 subfamily.

Isoforms (7)

UniProt IDNamesCanonical?
Q13002-11, Ayes
Q13002-22, B
Q13002-33
Q13002-44
Q13002-55, C
Q13002-66, D
Q13002-77, E

RefSeq proteins (3): NP_001159719, NP_068775, NP_786944 (=MANE)

Domains & families (InterPro)

IDNameType
IPR001320Iontro_rcpt_CDomain
IPR001508Iono_Glu_rcpt_metFamily
IPR001828ANF_lig-bd_rcptDomain
IPR015683Ionotropic_Glu_rcptFamily
IPR019594Glu/Gly-bdDomain
IPR028082Peripla_BP_IHomologous_superfamily

Pfam: PF00060, PF01094, PF10613

Catalyzed reactions (Rhea), 2 shown:

  • Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
  • Na(+)(in) = Na(+)(out) (RHEA:34963)

UniProt features (77 total): strand 14, helix 12, sequence variant 10, glycosylation site 9, binding site 6, splice variant 6, topological domain 5, transmembrane region 3, modified residue 2, disulfide bond 2, sequence conflict 2, turn 2, signal peptide 1, chain 1, cross-link 1, intramembrane region 1

Structure

Experimental structures (PDB)

2 structures.

PDBMethodResolution (Å)
5CMMX-RAY DIFFRACTION1.27
3QXMX-RAY DIFFRACTION1.65

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q13002-F183.670.48

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (6): 516; 518; 523; 689; 690; 738

Post-translational modifications (3): 846, 868, 886

Disulfide bonds (2): 96–347, 750–804

Glycosylation sites (9): 67, 73, 275, 378, 412, 423, 430, 546, 751

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-451307Activation of Na-permeable kainate receptors
R-HSA-451308Activation of Ca-permeable Kainate Receptor

MSigDB gene sets: 433 (showing top): BROWNE_HCMV_INFECTION_4HR_UP, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, REACTOME_IONOTROPIC_ACTIVITY_OF_KAINATE_RECEPTORS, MODULE_274, GOBP_SENSORY_PERCEPTION_OF_TEMPERATURE_STIMULUS, GOBP_BEHAVIOR, GOMF_GLUTAMATE_GATED_RECEPTOR_ACTIVITY, GOBP_REGULATION_OF_NEURONAL_SYNAPTIC_PLASTICITY, GOBP_REGULATION_OF_SYNAPTIC_TRANSMISSION_GLUTAMATERGIC, GOBP_REGULATION_OF_SHORT_TERM_NEURONAL_SYNAPTIC_PLASTICITY, ATGCAGT_MIR217, GOBP_MULTICELLULAR_ORGANISMAL_RESPONSE_TO_STRESS, GOBP_CELL_CELL_SIGNALING, NFKB_Q6, GOBP_DETECTION_OF_TEMPERATURE_STIMULUS

GO Biological Process (27): behavioral fear response (GO:0001662), intracellular calcium ion homeostasis (GO:0006874), glutamate receptor signaling pathway (GO:0007215), chemical synaptic transmission (GO:0007268), neuronal action potential (GO:0019228), synaptic transmission, glutamatergic (GO:0035249), receptor clustering (GO:0043113), negative regulation of neuron apoptotic process (GO:0043524), positive regulation of neuron apoptotic process (GO:0043525), regulation of JNK cascade (GO:0046328), regulation of long-term neuronal synaptic plasticity (GO:0048169), regulation of short-term neuronal synaptic plasticity (GO:0048172), modulation of chemical synaptic transmission (GO:0050804), positive regulation of synaptic transmission (GO:0050806), neuron apoptotic process (GO:0051402), negative regulation of synaptic transmission, glutamatergic (GO:0051967), inhibitory postsynaptic potential (GO:0060080), modulation of excitatory postsynaptic potential (GO:0098815), presynaptic modulation of chemical synaptic transmission (GO:0099171), detection of cold stimulus involved in thermoception (GO:0120169), monoatomic ion transport (GO:0006811), calcium-mediated signaling (GO:0019722), monoatomic ion transmembrane transport (GO:0034220), ionotropic glutamate receptor signaling pathway (GO:0035235), regulation of membrane potential (GO:0042391), excitatory postsynaptic potential (GO:0060079), regulation of presynaptic membrane potential (GO:0099505)

GO Molecular Function (16): SNARE binding (GO:0000149), glutamate-gated receptor activity (GO:0004970), extracellularly glutamate-gated ion channel activity (GO:0005234), kainate selective glutamate receptor activity (GO:0015277), glutamate-gated calcium ion channel activity (GO:0022849), PDZ domain binding (GO:0030165), ubiquitin conjugating enzyme binding (GO:0031624), ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), scaffold protein binding (GO:0097110), ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (GO:0099507), transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (GO:1904315), monoatomic ion channel activity (GO:0005216), glutamate receptor activity (GO:0008066), ligand-gated monoatomic ion channel activity (GO:0015276), signaling receptor activity (GO:0038023)

GO Cellular Component (18): plasma membrane (GO:0005886), dendrite cytoplasm (GO:0032839), kainate selective glutamate receptor complex (GO:0032983), presynaptic membrane (GO:0042734), terminal bouton (GO:0043195), perikaryon (GO:0043204), mossy fiber rosette (GO:0097471), hippocampal mossy fiber to CA3 synapse (GO:0098686), postsynaptic density membrane (GO:0098839), glutamatergic synapse (GO:0098978), ionotropic glutamate receptor complex (GO:0008328), postsynaptic density (GO:0014069), membrane (GO:0016020), axon (GO:0030424), dendrite (GO:0030425), neuronal cell body (GO:0043025), synapse (GO:0045202), postsynaptic membrane (GO:0045211)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
Ionotropic activity of kainate receptors2

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
chemical synaptic transmission3
modulation of chemical synaptic transmission3
presynapse3
protein binding3
glutamate receptor activity2
regulation of neuron apoptotic process2
neuron apoptotic process2
regulation of neuronal synaptic plasticity2
regulation of postsynaptic membrane potential2
transmitter-gated monoatomic ion channel activity2
glutamate-gated receptor activity2
synaptic membrane2
cellular anatomical structure2
asymmetric synapse2
neuron projection2
behavioral defense response1
fear response1
intracellular monoatomic cation homeostasis1
calcium ion homeostasis1
cell surface receptor signaling pathway1
anterograde trans-synaptic signaling1
action potential1
transmission of nerve impulse1
plasma membrane1
protein localization to membrane1
negative regulation of apoptotic process1
positive regulation of apoptotic process1
JNK cascade1
regulation of MAPK cascade1
regulation of trans-synaptic signaling1
positive regulation of cell communication1
positive regulation of signaling1
apoptotic process1
synaptic transmission, glutamatergic1
negative regulation of synaptic transmission1
regulation of synaptic transmission, glutamatergic1
chemical synaptic transmission, postsynaptic1
regulation of signal transduction1
regulation of nervous system process1
regulation of membrane potential1

Protein interactions and networks

STRING

1978 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
GRIK2DLG4P78352991
GRIK2GRIK5Q16478983
GRIK2GRIK4Q16099982
GRIK2GRIK1P39086980
GRIK2GRIK3Q13003967
GRIK2NETO1Q8TDF5872
GRIK2NETO2Q8NC67869
GRIK2KLHL24Q6TFL4841
GRIK2UBE2IP50550833
GRIK2GRM7Q14831799
GRIK2KARS1Q15046795
GRIK2SDCBPO00560795
GRIK2PICK1Q9NRD5792
GRIK2GRIP1Q9Y3R0744
GRIK2GNB4Q9HAV0729

IntAct

132 interactions, top by confidence:

ABTypeScore
GRIK2GRIK2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2DLG3psi-mi:“MI:0407”(direct interaction)0.440
GRIK2TIAM2psi-mi:“MI:0407”(direct interaction)0.440
APBA3GRIK2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2MAST1psi-mi:“MI:0407”(direct interaction)0.440
GRIK2MAGI2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2PDZD7psi-mi:“MI:0407”(direct interaction)0.440
GRIK2APBA2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2MAST2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2GRIP2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2MPP2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2GRID2IPpsi-mi:“MI:0407”(direct interaction)0.440
PICK1GRIK2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2HTRA4psi-mi:“MI:0407”(direct interaction)0.440
GRIK2LIN7Cpsi-mi:“MI:0407”(direct interaction)0.440
GRIK2SNX27psi-mi:“MI:0407”(direct interaction)0.440
GRIK2NHERF4psi-mi:“MI:0407”(direct interaction)0.440
GRIK2WHRNpsi-mi:“MI:0407”(direct interaction)0.440
GRIK2PDZRN4psi-mi:“MI:0407”(direct interaction)0.440
GRIK2TAX1BP3psi-mi:“MI:0407”(direct interaction)0.440
GRIK2PATJpsi-mi:“MI:0407”(direct interaction)0.440
GRIK2MPP7psi-mi:“MI:0407”(direct interaction)0.440
PDZK1GRIK2psi-mi:“MI:0407”(direct interaction)0.440
GRIK2DLG4psi-mi:“MI:0407”(direct interaction)0.440
GRIK2PARD3Bpsi-mi:“MI:0407”(direct interaction)0.440
GRIK2MAGI1psi-mi:“MI:0407”(direct interaction)0.440
GRIK2GOPCpsi-mi:“MI:0407”(direct interaction)0.440
SCRIBGRIK2psi-mi:“MI:0407”(direct interaction)0.440

BioGRID (44): GRIK2 (Affinity Capture-Western), GRIK5 (Affinity Capture-Western), GRIK2 (Affinity Capture-RNA), GRIK2 (Affinity Capture-RNA), PICK1 (Reconstituted Complex), SDCBP (Reconstituted Complex), DLG4 (Reconstituted Complex), GRIP1 (Reconstituted Complex), DLG4 (Affinity Capture-Western), SDCBP (Affinity Capture-Western), PICK1 (Affinity Capture-Western), GRID2 (Affinity Capture-Western), GRIK2 (Affinity Capture-Western), GRIK2 (Affinity Capture-Western), GRIK2 (Affinity Capture-Western)

ESM2 similar proteins: A0A2R8QF68, B1AS29, P19439, P19490, P19491, P19492, P19493, P20262, P22756, P23818, P23819, P26591, P31422, P34299, P39086, P39087, P42260, P42261, P42262, P42263, P42264, P48058, Q01812, Q03445, Q13002, Q13003, Q14832, Q16099, Q16478, Q1ZZH1, Q21415, Q38PU2, Q38PU3, Q38PU4, Q38PU5, Q38PU6, Q38PU7, Q38PU8, Q5IS46, Q5R4M0

Diamond homologs: A0A2R8QF68, A7XY94, B1AS29, E9NA96, P19439, P19490, P19491, P19492, P19493, P20262, P22756, P23818, P23819, P26591, P34299, P35436, P39086, P39087, P42260, P42261, P42262, P42263, P42264, P48058, Q00959, Q01812, Q03445, Q10914, Q12879, Q13002, Q13003, Q16099, Q16478, Q21415, Q38PU2, Q38PU3, Q38PU4, Q38PU5, Q38PU6, Q38PU7

SIGNOR signaling

9 interactions.

AEffectBMechanism
PRKACA“up-regulates activity”GRIK2phosphorylation
GRIK2up-regulatesExcitatory_synaptic_transmission
“glutamic acid”“up-regulates activity”GRIK2“chemical activation”
GRIK2“up-regulates quantity”calcium(2+)relocalization
GRIK2“up-regulates quantity”D-serinerelocalization
SRC“up-regulates activity”GRIK2phosphorylation
PRKN“down-regulates quantity by destabilization”GRIK2ubiquitination
KLHL17“down-regulates quantity by destabilization”GRIK2binding
“Cullin 3-RBX1-Skp1”“down-regulates quantity by destabilization”GRIK2polyubiquitination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 84 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Ras activation upon Ca2+ influx through NMDA receptor551.9×2e-06
Unblocking of NMDA receptors, glutamate binding and activation549.4×2e-06
Negative regulation of NMDA receptor-mediated neuronal transmission549.4×2e-06
Long-term potentiation543.3×3e-06
Assembly and cell surface presentation of NMDA receptors941.5×6e-11
Neurexins and neuroligins1035.8×3e-11
Protein-protein interactions at synapses629.0×2e-06
RHOB GTPase cycle514.0×6e-04

GO biological processes:

GO termPartnersFoldFDR
establishment or maintenance of epithelial cell apical/basal polarity1178.9×3e-16
protein localization to synapse656.7×1e-07
receptor clustering753.9×1e-08
regulation of postsynaptic membrane neurotransmitter receptor levels742.8×4e-08
protein-containing complex assembly912.7×3e-06
cell-cell adhesion1012.5×6e-07
regulation of small GTPase mediated signal transduction58.9×6e-03
chemical synaptic transmission76.7×2e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

306 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic5
Likely pathogenic10
Uncertain significance201
Likely benign53
Benign10

Top pathogenic / likely-pathogenic (15)

Variant IDHGVSClassification
1180451NM_021956.5(GRIK2):c.1979C>G (p.Thr660Arg)Pathogenic
16087GRIK2, DEL/INV, EX7-11Pathogenic
189252NM_021956.5(GRIK2):c.592C>T (p.Arg198Ter)Pathogenic
870382NM_021956.5(GRIK2):c.1979C>A (p.Thr660Lys)Pathogenic
985841NM_021956.5(GRIK2):c.1969G>A (p.Ala657Thr)Pathogenic
1180452NM_021956.5(GRIK2):c.2003T>C (p.Ile668Thr)Likely pathogenic
1693459NM_021956.5(GRIK2):c.1960A>G (p.Asn654Asp)Likely pathogenic
2503314NM_021956.5(GRIK2):c.283+1G>CLikely pathogenic
2582447NM_021956.5(GRIK2):c.355C>T (p.Gln119Ter)Likely pathogenic
3064934NM_021956.5(GRIK2):c.1204-1G>TLikely pathogenic
3765562NM_021956.5(GRIK2):c.571G>T (p.Ala191Ser)Likely pathogenic
4081438NM_021956.5(GRIK2):c.126dup (p.Glu43Ter)Likely pathogenic
4527140NM_021956.5(GRIK2):c.1567C>T (p.Arg523Ter)Likely pathogenic
4823848GRCh37/hg19 6q16.3(chr6:102503205-102503455)x0Likely pathogenic
637968NM_021956.5(GRIK2):c.808C>T (p.Arg270Ter)Likely pathogenic

SpliceAI

2335 predictions. Top by Δscore:

VariantEffectΔscore
6:101454095:G:GTdonor_gain1.0000
6:101399243:G:GTdonor_gain0.9900
6:101399243:G:Tdonor_gain0.9900
6:101418596:G:Tdonor_gain0.9900
6:101439129:C:Gdonor_gain0.9900
6:101475669:G:GTdonor_gain0.9900
6:101475677:A:AGdonor_gain0.9900
6:101475677:A:Gdonor_gain0.9900
6:101501139:A:AGdonor_gain0.9900
6:101564789:TGCA:Tdonor_gain0.9900
6:101451509:G:GCacceptor_gain0.9800
6:101457761:A:Gacceptor_gain0.9800
6:101466737:C:Tdonor_gain0.9800
6:101483276:G:GTdonor_gain0.9800
6:101483287:C:Tdonor_gain0.9800
6:101564790:GCAA:Gdonor_gain0.9800
6:101399095:G:GGdonor_gain0.9700
6:101399295:GATTC:Gdonor_gain0.9700
6:101454018:G:GTdonor_gain0.9700
6:101501139:A:Gacceptor_gain0.9700
6:101418596:G:GTacceptor_gain0.9600
6:101466797:G:GTdonor_gain0.9600
6:101466820:TTG:Tdonor_gain0.9600
6:101564222:A:AGacceptor_gain0.9600
6:101451533:T:TAacceptor_gain0.9500
6:101457756:A:AGacceptor_gain0.9500
6:101457757:A:Gacceptor_gain0.9500
6:101463577:G:Tacceptor_gain0.9500
6:101505351:T:Gdonor_gain0.9500
6:101466798:A:Tdonor_gain0.9400

AlphaMissense

5757 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
6:101622012:C:AA60D1.000
6:101626382:T:AC96S1.000
6:101626382:T:CC96R1.000
6:101626383:G:AC96Y1.000
6:101626383:G:CC96S1.000
6:101626383:G:TC96F1.000
6:101626384:T:GC96W1.000
6:101626392:T:CL99P1.000
6:101626400:G:TG102W1.000
6:101626418:G:AG108R1.000
6:101626418:G:CG108R1.000
6:101626419:G:AG108E1.000
6:101626462:C:GC122W1.000
6:101626476:T:AV127D1.000
6:101626601:T:AW169R1.000
6:101626601:T:CW169R1.000
6:101626617:T:AV174D1.000
6:101676626:T:AL182H1.000
6:101676626:T:CL182P1.000
6:101676686:G:CR202P1.000
6:101676725:T:CL215P1.000
6:101799658:C:AA321D1.000
6:101799661:T:CL322P1.000
6:101799672:G:CA326P1.000
6:101799735:T:AC347S1.000
6:101799735:T:CC347R1.000
6:101799736:G:AC347Y1.000
6:101799736:G:CC347S1.000
6:101799737:T:GC347W1.000
6:101799753:T:AW353R1.000

dbSNP variants (sampled 300 via entrez): RS1000003439 (6:102044504 G>T), RS1000010011 (6:101953385 G>A), RS1000011871 (6:101878742 C>T), RS1000019550 (6:101723785 C>G,T), RS1000023898 (6:102001595 C>G,T), RS1000033262 (6:101505918 A>T), RS1000039625 (6:101548284 G>T), RS1000056485 (6:102001306 T>C), RS1000066063 (6:101946731 A>G), RS1000070476 (6:101835596 G>A,C,T), RS1000071542 (6:101683179 C>T), RS1000082041 (6:101878533 T>C), RS1000084453 (6:101801809 A>G), RS1000091582 (6:101548527 C>G,T), RS1000097775 (6:101962975 T>C)

Disease associations

OMIM: gene MIM:138244 | disease phenotypes: MIM:611092, MIM:619580

GenCC curated gene-disease

DiseaseClassificationInheritance
intellectual disability, autosomal recessive 6DefinitiveAutosomal recessive
neurodevelopmental disorder with impaired language and ataxia and with or without seizuresStrongAutosomal dominant
autosomal recessive non-syndromic intellectual disabilitySupportiveAutosomal recessive

ClinGen Gene-Disease Validity (2)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
complex neurodevelopmental disorderModerateAR
complex neurodevelopmental disorderDefinitiveAD

Mondo (5): intellectual disability, autosomal recessive 6 (MONDO:0012614), intellectual disability (MONDO:0001071), neurodevelopmental disorder with impaired language and ataxia and with or without seizures (MONDO:0859201), lip and oral cavity carcinoma (MONDO:0023644), autosomal recessive non-syndromic intellectual disability (MONDO:0019502)

Orphanet (3): Autosomal recessive non-syndromic intellectual disability (Orphanet:88616), Cerebral visual impairment (Orphanet:447788), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

65 total (30 of 65 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000007Autosomal recessive inheritance
HP:0000252Microcephaly
HP:0000365Hearing impairment
HP:0000473Torticollis
HP:0000486Strabismus
HP:0000712Emotional lability
HP:0000718Aggressive behavior
HP:0000729Autistic behavior
HP:0000733Motor stereotypy
HP:0000736Short attention span
HP:0000739Anxiety
HP:0000749Paroxysmal bursts of laughter
HP:0000750Delayed speech and language development
HP:0000961Cyanosis
HP:0001188Hand clenching
HP:0001249Intellectual disability
HP:0001251Ataxia
HP:0001252Hypotonia
HP:0001256Mild intellectual disability
HP:0001263Global developmental delay
HP:0001266Choreoathetosis
HP:0001270Motor delay
HP:0001272Cerebellar atrophy
HP:0001290Generalized hypotonia
HP:0001298Encephalopathy
HP:0001336Myoclonus
HP:0001344Absent speech
HP:0002066Gait ataxia
HP:0002069Bilateral tonic-clonic seizure

GWAS associations

16 associations (top):

StudyTraitp-value
GCST000328_15Biochemical measures2.000000e-06
GCST000960_9Cardiac hypertrophy3.000000e-06
GCST001607_5Renal function-related traits (eGRFcrea)1.000000e-07
GCST001636_2Obsessive-compulsive disorder3.000000e-06
GCST001762_430Obesity-related traits5.000000e-06
GCST001838_5Palmitic acid (16:0) levels2.000000e-07
GCST002599_1Longevity (90 years and older)5.000000e-08
GCST002945_37Emphysema imaging phenotypes3.000000e-07
GCST005024_41Pursuit maintenance gain5.000000e-07
GCST005847_6Heart rate response to recovery post exercise (20 sec)6.000000e-09
GCST008152_161Weight7.000000e-06
GCST009439_1Age-related cognitive decline (language) (slope of z-scores)8.000000e-06
GCST012322_34Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder5.000000e-08
GCST012484_25Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer’s disease1.000000e-05
GCST90020024_591A body shape index3.000000e-09
GCST90020029_1413Waist circumference adjusted for body mass index1.000000e-08

EFO canonical traits (10, from GWAS)

EFO IDTrait name
EFO:0002503cardiac hypertrophy
EFO:0007626emphysema imaging measurement
EFO:0008433pursuit maintenance gain measurement
EFO:0009185heart rate response to recovery post exercise
EFO:0004338body weight
EFO:0007710cognitive decline measurement
EFO:0004530triglyceride measurement
EFO:0005658response to selective serotonin reuptake inhibitor
EFO:0007659APOE carrier status
EFO:0007789BMI-adjusted waist circumference

MeSH disease descriptors (2)

DescriptorNameTree numbers
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
C567017Mental Retardation, Autosomal Recessive 6 (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL2109241 (PROTEIN COMPLEX GROUP), CHEMBL3038480 (PROTEIN COMPLEX), CHEMBL3683 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 944,840 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL575060GLUTAMIC ACID3929,756
CHEMBL275040KAINIC ACID215,084

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2518224GRIK20.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: lgic — Ionotropic glutamate receptors

Most potent curated ligand interactions (7 total), top 7:

LigandActionAffinityParameter
dysiherbaineFull agonist8.92pKi
[3H]kainateFull agonist8.18pKd
SYM2081Agonist8.0pKi
domoic acidFull agonist7.74pKi
kainateFull agonist7.49pKi
LY339434Agonist4.92pKi
BPAM344Positive4.1pEC50

Binding affinities (BindingDB)

3 measured of 7 human assays (8 total across all organisms); most potent 3 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
SPD 502KI620 nM
NS3763KI1600 nM
LY-293558KI3200 nM

ChEMBL bioactivities

127 potent at pChembl≥5 of 177 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
8.92Ki1.2nMDYSIHERBAINE
8.22Ki6.04nMDOMOIC ACID
8.00Ki10nM2S,4R-4-METHYLGLUTAMATE
7.74Ki18.3nMDOMOATE
7.53Ki29.8nMCHEMBL121741
7.50Ki32nMKAINIC ACID
7.50Ki31.7nMCHEMBL431839
7.49Ki32.4nMKAINIC ACID
7.42Ki38.4nMCHEMBL120003
7.39Ki41.1nMCHEMBL332334
7.32Ki48nMCHEMBL59284
7.30Ki50nMCHEMBL1234118
7.28Ki53nMKAINIC ACID
7.26Ki54.3nMCHEMBL120785
7.24Ki57.4nMCHEMBL333015
7.23Ki59nMCHEMBL59284
7.16Ki70nMCHEMBL13076
7.11IC5077nMKAINIC ACID
7.08Ki82.2nMCHEMBL332467
7.04Ki90.6nMCHEMBL121113
7.03Ki93.5nMCHEMBL332168
6.97Ki107.8nMCHEMBL334119
6.96Ki110nMCHEMBL12696
6.96Ki110nMCHEMBL273675
6.91Ki122.5nMCHEMBL332818
6.90Ki126.2nMCHEMBL332114
6.89Ki130nMCHEMBL5591383
6.89Ki129.3nMCHEMBL121514
6.88Ki131.5nMCHEMBL120753
6.88Ki130.6nMCHEMBL333790
6.84Ki145.6nMCHEMBL120450
6.83Ki146.8nMCHEMBL120288
6.83Ki146.6nMCHEMBL122507
6.80Ki160nMCHEMBL59551
6.77Ki169.3nMCHEMBL121461
6.68Ki209.6nMCHEMBL368275
6.58Ki262.7nMCHEMBL331339
6.56Ki275.3nMCHEMBL431657
6.54Ki288nMCHEMBL118502
6.47Ki339nMCHEMBL58808
6.39Ki410nMCHEMBL268284
6.35Ki450nMCHEMBL38499
6.30Ki500nMCHEMBL61697
6.25Ki559nMCHEMBL294683
6.21Ki610nMCHEMBL13076
6.18Ki663.3nMCHEMBL123006
6.18Ki667nMCHEMBL334024
6.16EC50700nMKAINIC ACID
6.16IC50700nMCHEMBL3104225
6.16Ki700nMCHEMBL84142

PubChem BioAssay actives

101 with measured affinity, of 408 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(2R,3aR,6S,7R,7aR)-2-[(2S)-2-amino-2-carboxyethyl]-6-hydroxy-7-(methylamino)-3,3a,5,6,7,7a-hexahydrofuro[3,2-b]pyran-2-carboxylic acid1325015: Displacement of [3H]kianic acid from recombinant GluK2 kainate receptor (unknown origin) expressed in HEK293 cell membranes measured after 1 hrki0.0012uM
(2S,3S,4S)-4-[(2Z,4E,6R)-6-carboxyhepta-2,4-dien-2-yl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid2114774: Displacement of [3H](2S, 4R)-4-MeGlu (SYM-2081) from GluK2 (unknown origin)ki0.0060uM
(2S,4R)-2-amino-4-methylpentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.0100uM
(3R,4E,6E)-7-[4,5-bis(1-hydroxyethenyl)pyrrolidin-3-yl]-3-methylocta-1,4,6-trien-2-ol93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0183uM
(2S,3S,4S)-3-(carboxymethyl)-4-(1-phenylethenyl)pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0298uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-chlorophenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0317uM
(2S,3S,4S)-3-(carboxymethyl)-4-prop-1-en-2-ylpyrrolidine-2-carboxylic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.0320uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-fluorophenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0384uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-methylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0411uM
(2S,4R)-2-amino-4-[(E)-3-(2-methoxyphenyl)prop-2-enyl]pentanedioic acid93267: Compound was tested for binding affinity against human Ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]-kainate as radioligandki0.0480uM
(3S,4aR,6S,8aR)-6-[[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl]-1,2,3,4,4a,5,6,7,8,8a-decahydroisoquinoline-3-carboxylic acid1325319: Displacement of [3H]-kainate from human recombinant GluK2 receptor expressed in HEK293 cell membranes after 60 minski0.0500uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-fluoro-3-methylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0543uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-methoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0574uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-ethylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0822uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-phenylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0906uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-methoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.0935uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(3,4-dimethylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1078uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-methylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1225uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-[4-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1262uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-[3-methyl-4-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1293uM
(2S,3S,4S)-4-[(2Z,5E)-6-carboxyhepta-2,5-dien-2-yl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid2114776: Displacement of [3H]-kainic acid from GluR6 (unknown origin) expressed in Sf9 cells membraneki0.1300uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-phenylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1306uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-prop-1-en-2-ylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1315uM
(2S,3S,4S)-4-[1-(4-butylphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1456uM
(2S,3S,4S)-4-[1-(4-butoxyphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1466uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-propylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1468uM
(2S,4R)-2-amino-4-prop-2-ynylpentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.1600uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(3,5-dimethylphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.1693uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(4-phenoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.2096uM
(2S,3S,4S)-4-[1-(4-tert-butylphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.2627uM
(2S,3S,4S)-4-[1-(3-butoxyphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.2753uM
(2S,3S,4S)-4-[1-(4-but-1-en-2-ylphenyl)ethenyl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.2880uM
(2S,4R)-2-amino-4-[(Z)-3-phenylprop-2-enyl]pentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.3390uM
(2S)-2-amino-4-methylidenepentanedioic acid93265: Binding affinity of compound was determined against Ionotropic glutamate receptor ionotropic kainate 2 using cell membranes prepared from HEK293 cellski0.4500uM
(2S,4R)-2-amino-4-[(E)-2-methyl-3-phenylprop-2-enyl]pentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.5000uM
(2S,4R)-2-amino-4-[(E)-3-(4-fluorophenyl)prop-2-enyl]pentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.5590uM
2-[7-[3-[[(4-nitrophenyl)carbamoylamino]methyl]pyrrol-1-yl]-2,3-dioxo-6-(trifluoromethyl)-4H-quinoxalin-1-yl]acetic acid75679: Binding affinity for human GluR6 expressed in HEK293 cells using [3]H-kainateki0.6100uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-(3-methyl-4-pentoxyphenyl)ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.6633uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-[3-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki0.6670uM
1-ethyl-5-methoxy-2-(4-methoxyphenyl)-3-methylindole1063863: Displacement of [3H]-kainate from GluK2 receptor (unknown origin)ic500.7000uM
(2S,4S)-2-amino-4-prop-2-ynylpentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki0.8230uM
N-[7-fluoro-2,3-dioxo-6-(trifluoromethyl)-4H-quinoxalin-1-yl]-2-hydroxybenzamide1859139: Binding affinity to GluK2 receptor (unknown origin)ki0.9080uM
(2S,4R)-2-amino-4-(3-phenylprop-2-ynyl)pentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki1.0000uM
glutamic acid93265: Binding affinity of compound was determined against Ionotropic glutamate receptor ionotropic kainate 2 using cell membranes prepared from HEK293 cellski1.1060uM
(2S,4R)-2-amino-4-[(E)-3-(3-chlorophenyl)prop-2-enyl]pentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki1.1320uM
3-(6-nitro-2,3-dioxo-7-pyrrol-1-yl-4H-quinoxalin-1-yl)propanoic acid75679: Binding affinity for human GluR6 expressed in HEK293 cells using [3]H-kainateki1.2000uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-[3-methoxy-4-(2-phenylethoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki1.2840uM
(2S,3S,4S)-3-(carboxymethyl)-4-[1-[4-(5-phenylpentoxy)phenyl]ethenyl]pyrrolidine-2-carboxylic acid93266: Inhibition of [3H]kainate binding at ionotropic glutamate receptor kainate 2ki1.2957uM
2-[6-nitro-2,3-dioxo-7-[3-[[4-(2-phenylethyl)piperazin-1-yl]methyl]pyrrol-1-yl]-4H-quinoxalin-1-yl]acetic acid75679: Binding affinity for human GluR6 expressed in HEK293 cells using [3]H-kainateki1.4000uM
(2S,4R)-2-amino-4-[(E)-3-(2-chlorophenyl)prop-2-enyl]pentanedioic acid93392: Binding affinity against human ionotropic glutamate receptor ionotropic kainate 2 in HEK293 cells using [3H]kainate as radioligandki1.4040uM

CTD chemical–gene interactions

34 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Adecreases expression, decreases methylation2
sodium arsenitedecreases expression, increases expression2
Nickeldecreases expression2
Valproic Acidincreases expression2
aristolochic acid Idecreases expression1
ethyl-p-hydroxybenzoatedecreases expression1
trichostatin Aincreases expression1
zinc chlorideincreases expression1
butyraldehydedecreases expression1
pentanaldecreases expression1
abrineincreases expression1
bisphenol Saffects cotreatment, increases methylation1
Temozolomideincreases expression1
Sunitinibincreases expression1
Fulvestrantaffects cotreatment, increases methylation1
Benzo(a)pyreneincreases methylation1
Benzoatesdecreases activity, affects binding1
Cannabidiolincreases expression1
Diethylhexyl Phthalatedecreases expression1
Doxorubicindecreases expression1
Endosulfanincreases expression1
Estradiolaffects expression1
Silicon Dioxidedecreases expression1
Thimerosalincreases expression1
Tobacco Smoke Pollutiondecreases expression1
Tretinoinincreases expression1
Triclosandecreases expression1
Zincincreases expression1
Citalopramaffects response to substance1
Aflatoxin B1decreases methylation1

ChEMBL screening assays

92 unique, capped per target: 66 binding, 26 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL6140042BindingInhibition of kainate receptor (unknown origin) expressed in Xenopus oocytes at 5 uM by radioligand binding assayThienopyrimidinone Derivatives as a GluN2B/C/D Biased, Positive Allosteric Modulator of the N-Methyl-d-Aspartate Receptor. — J Med Chem
CHEMBL1226258FunctionalAgonist activity at iGluR6 L439C mutant expressed in human HEK293 cells assessed as increase in intracellular Ca2+ levels by FURA-2-M staining based fluorimetric methodAllosteric control of an ionotropic glutamate receptor with an optical switch. — Nat Chem Biol

Cellosaurus cell lines

1 cell lines: 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1JQPrecisION hGluR6-HEKTransformed cell lineFemale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT05657860PHASE4COMPLETEDGuanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome
NCT05744479PHASE4RECRUITINGMetformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability
NCT06107829PHASE4WITHDRAWNValbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities
NCT06997198PHASE4NOT_YET_RECRUITINGDeutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities
NCT01418118PHASE4COMPLETEDAssessment of the Effects of Pressors on Graft Blood Flow After Free Tissue Transfer Surgery
NCT03017053PHASE4UNKNOWNThe Optimal Neck Treatments Strategy of Early Oral Cancer Based on Adverse Pathological Factor
NCT03684707PHASE4UNKNOWNCancer Chemoprevention by Metformin Hydrochloride Compared to Placebo in Oral Potentially Malignant Lesions
NCT02270736PHASE3COMPLETEDClinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability
NCT00158652PHASE3COMPLETEDAccelerated Radiotherapy and Concomitant Chemo-radiotherapy in HNSCC
NCT00158678PHASE3COMPLETEDIMRT Plus Cisplatin Versus Conventional Radiotherapy Plus Cisplatin in Stage III-IV HNSCC
NCT00402779PHASE3COMPLETEDErlotinib Prevention of Oral Cancer (EPOC)
NCT00655421PHASE3UNKNOWNOral Cancer Screening in Mumbai, India by Primary Health Care Workers
NCT00750503PHASE3COMPLETEDWorkplace Tobacco Cessation And Oral Cancer Screening Study
NCT00964977PHASE3COMPLETEDEffectiveness of Adjuvant Radiotherapy in Small Oropharyngeal Squamous Cell Cancer and Single Lymph Node Metastasis.
NCT01039298PHASE3UNKNOWNEfficacy of Optically-guided Surgery in the Management of Early-staged Oral Cancer - COOLS TRIAL
NCT03685409PHASE3UNKNOWNCancer Chemoprevention by Metformin Hydrochloride in Oral Potentially Malignant Lesions
NCT05721755PHASE3ACTIVE_NOT_RECRUITINGCombining Radiation Therapy With Immunotherapy for the Treatment of Metastatic Squamous Cell Carcinoma of the Head and Neck
NCT06589804PHASE3RECRUITINGTesting the Addition of Anti-Cancer Drug, Cetuximab, to Standard of Care Treatment (Pembrolizumab) for Returning or Spreading Head and Neck Cancer After Previous Treatment
NCT06737822PHASE3RECRUITINGUpfront Surgery Vs Induction Chemotherapy Followed By Surgery In Oral Cancers:
NCT07402538PHASE3NOT_YET_RECRUITINGSurgery With or Without Neoadjuvant Treatment of SBRT Plus Chemoimmunotherapy in Resectable Locally Advanced Oral and HPV-unrelated Oropharyngeal Squamous Cell Carcinoma
NCT07441681PHASE3NOT_YET_RECRUITINGComparing Radiation Plus Cetuximab to Radiation Plus Chemotherapy in People With Head and Neck Cancer Who Cannot Receive Cisplatin
NCT02304302PHASE2COMPLETEDDown Syndrome Memantine Follow-up Study
NCT03862950PHASE2COMPLETEDA Trial of Metformin in Individuals With Fragile X Syndrome (Met)
NCT04529226PHASE2UNKNOWNStudy to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis
NCT04821856PHASE2COMPLETEDEvaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability
NCT00330382PHASE2COMPLETEDBowman-Birk Inhibitor Concentrate in Preventing Cancer in Patients With Oral Leukoplakia
NCT00400205PHASE2TERMINATEDStudy of Induction Docetaxel, Cisplatin and 5-Fluorouracil
NCT00933387PHASE2COMPLETEDA Study of Neoadjuvant Bio-C/T Followed by Concurrent Bio-R/T in High-risk Locally Advanced Oral Squamous Cell Carcinoma
NCT01440270PHASE2COMPLETEDNeo-adjuvant Erbitux-based Chemotherapy for Locally Advanced Oral/Oropharyngeal Cancer
NCT01733797PHASE2COMPLETEDTrismus Trial of Therabite vs Wooden Spatula in Head and Neck Cancer Patients
NCT02734537PHASE2RECRUITINGRadiation Therapy With or Without Cisplatin in Treating Patients With Stage III-IVA Squamous Cell Carcinoma of the Head and Neck Who Have Undergone Surgery
NCT02960724PHASE2UNKNOWNuPAR PET/CT for Staging Advanced and Localised Oral and Oropharyngeal Cancer
NCT03008694PHASE2UNKNOWNEffect of FDG-PET/CT for Simulation and Radiation Treatment Planning in Oral Cancer Patients
NCT03174275PHASE2ACTIVE_NOT_RECRUITINGCarboplatin, Nab-Paclitaxel, Durvalumab Before Surgery and Adjuvant Therapy in Head and Neck Squamous Cell Carcinoma
NCT03383094PHASE2ACTIVE_NOT_RECRUITINGChemoradiation vs Immunotherapy and Radiation for Head and Neck Cancer
NCT03529422PHASE2ACTIVE_NOT_RECRUITINGDurvalumab With Radiotherapy for Adjuvant Treatment of Intermediate Risk SCCHN
NCT04191460PHASE2RECRUITINGFluorescence-guided Surgery Using cRGD-ZW800-1 in Oral Cancer
NCT04251949PHASE2COMPLETEDEvaluation of the Photobiomodulation Using LED Lamp for Curative Treatment of Radio-induced Mucositis.
NCT04541355PHASE2COMPLETEDSodium Thiosulfate in Preventing Ototoxicity for Squamous Cell Cancer Patients Undergoing Chemoradiation With Cisplatin
NCT04862650PHASE2ACTIVE_NOT_RECRUITINGCemiplimab, Low-Dose Paclitaxel and Carboplatin for the Treatment of Recurrent/Metastatic Squamous Cell Carcinoma of the Head and Neck