GRXCR1
geneOn this page
Also known as PPP1R88
Summary
GRXCR1 (glutaredoxin and cysteine rich domain containing 1, HGNC:31673) is a protein-coding gene on chromosome 4p13, encoding Glutaredoxin domain-containing cysteine-rich protein 1 (A8MXD5). May play a role in actin filament architecture in developing stereocilia of sensory cells.
This gene is one of 60 loci associated with autosomal-recessive nonsyndromic hearing impairment. This gene encodes a protein which contains GRX-like domains; these domains play a role in the S-glutathionylation of proteins and may be involved in actin organization in hair cells.
Source: NCBI Gene 389207 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nonsyndromic genetic hearing loss (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 169 total — 10 pathogenic, 4 likely-pathogenic
- Phenotypes (HPO): 5
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001080476
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:31673 |
| Approved symbol | GRXCR1 |
| Name | glutaredoxin and cysteine rich domain containing 1 |
| Location | 4p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PPP1R88 |
| Ensembl gene | ENSG00000215203 |
| Ensembl biotype | protein_coding |
| OMIM | 613283 |
| Entrez | 389207 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000399770
RefSeq mRNA: 1 — MANE Select: NM_001080476
NM_001080476
CCDS: CCDS43225
Canonical transcript exons
ENST00000399770 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001540121 | 43030361 | 43030658 |
| ENSE00001540128 | 43020354 | 43020419 |
| ENSE00001540130 | 42962892 | 42963134 |
| ENSE00001540131 | 42892713 | 42893650 |
Expression profiles
Bgee: expression breadth tissue_specific, 7 present calls, max score 82.98.
Top tissues by expression
121 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.98 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 43.96 | silver quality |
| colonic epithelium | UBERON:0000397 | 41.29 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 38.24 | gold quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| cortical plate | UBERON:0005343 | 36.47 | gold quality |
| bone marrow cell | CL:0002092 | 36.16 | gold quality |
| granulocyte | CL:0000094 | 35.92 | gold quality |
| ganglionic eminence | UBERON:0004023 | 35.49 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 34.86 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 32.74 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 32.15 | gold quality |
| muscle tissue | UBERON:0002385 | 32.14 | gold quality |
| bone marrow | UBERON:0002371 | 31.74 | gold quality |
| leukocyte | CL:0000738 | 31.63 | gold quality |
| monocyte | CL:0000576 | 31.44 | gold quality |
| sural nerve | UBERON:0015488 | 30.93 | gold quality |
| stromal cell of endometrium | CL:0002255 | 29.87 | gold quality |
| right uterine tube | UBERON:0001302 | 29.52 | gold quality |
| liver | UBERON:0002107 | 29.16 | gold quality |
| nucleus accumbens | UBERON:0001882 | 28.28 | gold quality |
| duodenum | UBERON:0002114 | 28.14 | gold quality |
| urinary bladder | UBERON:0001255 | 27.73 | gold quality |
| lymph node | UBERON:0000029 | 27.57 | gold quality |
| primary visual cortex | UBERON:0002436 | 27.54 | gold quality |
| islet of Langerhans | UBERON:0000006 | 27.27 | gold quality |
| tonsil | UBERON:0002372 | 27.05 | gold quality |
| right coronary artery | UBERON:0001625 | 27.04 | gold quality |
| fundus of stomach | UBERON:0001160 | 26.81 | gold quality |
| putamen | UBERON:0001874 | 26.78 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 16.16 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
10 targeting GRXCR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-497-3P | 99.61 | 69.71 | 1990 |
| HSA-MIR-410-3P | 99.27 | 69.98 | 2457 |
| HSA-MIR-6742-3P | 97.95 | 64.50 | 1490 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 2)
- Quantitative analysis of GRXCR1 transcripts in fetal and adult human tissues revealed a preferential expression of the gene in fetal cochlea, which may explain the nonsyndromic nature of the hearing impairment. (PMID:20137778)
- Novel mutations in GRXCR1 at DFNB25 leading to progressive hearing loss are identified in a Japanese family. (PMID:25802247)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | grxcr1b | ENSDARG00000069865 |
| danio_rerio | grxcr1a | ENSDARG00000105434 |
| mus_musculus | Grxcr1 | ENSMUSG00000068082 |
| rattus_norvegicus | Grxcr1 | ENSRNOG00000038891 |
| drosophila_melanogaster | CG12206 | FBGN0029662 |
| drosophila_melanogaster | CG31559 | FBGN0051559 |
| caenorhabditis_elegans | WBGENE00021593 |
Paralogs (2): GLRX2 (ENSG00000023572), GRXCR2 (ENSG00000204928)
Protein
Protein identifiers
Glutaredoxin domain-containing cysteine-rich protein 1 — A8MXD5 (reviewed: A8MXD5)
All UniProt accessions (1): A8MXD5
UniProt curated annotations — full annotation on UniProt →
Function. May play a role in actin filament architecture in developing stereocilia of sensory cells.
Subcellular location. Cell projection. Stereocilium. Microvillus. Kinocilium.
Tissue specificity. Expressed at low levels in adult lung, brain and duodenum with moderate levels in testis. Highly expressed in fetal cochlea.
Disease relevance. Deafness, autosomal recessive, 25 (DFNB25) [MIM:613285] A form of non-syndromic sensorineural deafness characterized by moderate to severe or profound hearing loss which is progressive in some individuals but not in others. Speech development is impaired in some but not all affected individuals, and vestibular dysfunction is observed in some affected individuals. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the GRXCR1 family.
RefSeq proteins (1): NP_001073945* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002109 | Glutaredoxin | Domain |
| IPR036249 | Thioredoxin-like_sf | Homologous_superfamily |
| IPR042797 | GRXCR1 | Family |
Pfam: PF00462, PF23733
UniProt features (9 total): sequence variant 7, chain 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-A8MXD5-F1 | 75.36 | 0.37 |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
MSigDB gene sets: 75 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOBP_PLASMA_MEMBRANE_ORGANIZATION, GOBP_NEUROGENESIS, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_RESPONSE_TO_METAL_ION, GOBP_EPIDERMAL_CELL_DIFFERENTIATION, GOBP_EXOCYTOSIS, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_EAR_DEVELOPMENT, GOBP_EMBRYONIC_ORGAN_MORPHOGENESIS, GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_SECRETION
GO Biological Process (15): exocytosis (GO:0006887), plasma membrane organization (GO:0007009), sensory perception of sound (GO:0007605), response to calcium ion (GO:0051592), establishment of localization in cell (GO:0051649), auditory receptor cell stereocilium organization (GO:0060088), vestibular receptor cell development (GO:0060118), inner ear receptor cell development (GO:0060119), inner ear receptor cell stereocilium organization (GO:0060122), calcium ion transmembrane transport (GO:0070588), cochlea development (GO:0090102), response to acetylcholine (GO:1905144), cell morphogenesis (GO:0000902), inner ear auditory receptor cell differentiation (GO:0042491), inner ear development (GO:0048839)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): microvillus (GO:0005902), stereocilium (GO:0032420), kinocilium (GO:0060091), cilium (GO:0005929), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Sensory processing of sound | 2 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| inner ear receptor cell development | 2 |
| inner ear receptor cell differentiation | 2 |
| anatomical structure development | 2 |
| actin-based cell projection | 2 |
| stereocilium bundle | 2 |
| neuron projection | 2 |
| vesicle-mediated transport | 1 |
| secretion by cell | 1 |
| vesicle fusion to plasma membrane | 1 |
| endomembrane system organization | 1 |
| membrane organization | 1 |
| sensory perception of mechanical stimulus | 1 |
| response to metal ion | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| auditory receptor cell morphogenesis | 1 |
| inner ear receptor cell stereocilium organization | 1 |
| vestibular receptor cell differentiation | 1 |
| neuron development | 1 |
| neuron projection development | 1 |
| calcium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| inner ear development | 1 |
| response to nitrogen compound | 1 |
| response to oxygen-containing compound | 1 |
| anatomical structure morphogenesis | 1 |
| hair cell differentiation | 1 |
| ear development | 1 |
| binding | 1 |
| actin filament bundle | 1 |
| radial spoke | 1 |
| organelle | 1 |
| 9+2 non-motile cilium | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
760 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GRXCR1 | ATP8A1 | Q9Y2Q0 | 927 |
| GRXCR1 | SERINC3 | Q13530 | 892 |
| GRXCR1 | GLRX | P35754 | 839 |
| GRXCR1 | ACADM | P11310 | 795 |
| GRXCR1 | E9PNW1 | E9PNW1 | 778 |
| GRXCR1 | CDH23 | Q9H251 | 727 |
| GRXCR1 | GIPC3 | Q8TF64 | 682 |
| GRXCR1 | TPRN | Q4KMQ1 | 657 |
| GRXCR1 | ADGRV1 | Q8WXG9 | 646 |
| GRXCR1 | KCNQ4 | P56696 | 625 |
| GRXCR1 | PJVK | Q0ZLH3 | 605 |
| GRXCR1 | LOXHD1 | Q8IVV2 | 600 |
| GRXCR1 | TMPRSS3 | P57727 | 599 |
| GRXCR1 | TMC1 | Q8TDI8 | 597 |
| GRXCR1 | ESPN | B1AK53 | 587 |
| GRXCR1 | MYO3A | Q8NEV4 | 587 |
IntAct
30 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GRXCR1 | ALAS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | TEX11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | PRDM6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | PICK1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | CAP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | INCA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | SDCBP | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | SNX32 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRXCR1 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| GRXCR1 | PPP1CA | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GRXCR1 | VPS4B | psi-mi:“MI:0914”(association) | 0.350 |
| GRXCR1 | ALAS1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | CAP2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | TEX11 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | PRDM6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | PICK1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SDCBP | GRXCR1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | INCA1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | SNX32 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GRXCR1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (17): GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), GRXCR1 (Two-hybrid), PGAM4 (Affinity Capture-MS), SCIN (Affinity Capture-MS), VPS4B (Affinity Capture-MS), KLHL24 (Affinity Capture-MS), C9orf41 (Affinity Capture-MS), PPP1CC (Affinity Capture-MS)
ESM2 similar proteins: A2YP56, A3BMN9, A3KMI0, A7UL74, A8MXD5, B8ARK7, F4JUI9, O80831, P08487, P0CB22, P10686, P19174, P29375, P41229, P41230, P54936, Q02256, Q03606, Q0WVD6, Q10003, Q22070, Q30DN6, Q38JA7, Q3UXZ9, Q50H32, Q5RBG4, Q5REW0, Q62077, Q62240, Q63369, Q6K431, Q710E8, Q7XWV4, Q7Z478, Q80Y84, Q80Y98, Q84W56, Q8GZB6, Q8LI34, Q8LMR2
Diamond homologs: A6NFK2, A8MXD5, Q3TYR5, Q50H32, O23419, Q02784, Q0JM76, Q6NLU2, Q8LBK6, Q9FLE8, Q9HDW8, Q9LH89, Q9VNL4, Q9W4S1, B7ZFT1, O04341, O23417, O23420, O23421, O76003, O81187, O82254, O82255, P0AC62, P0AC63, P0AC64, P0C290, P0C291, P10575, P12309, P17695, P35754, P38068, P55142, P55143, Q0DAE4, Q0DK35, Q0IMV4, Q0IRB0, Q0J3L4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
169 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 4 |
| Uncertain significance | 89 |
| Likely benign | 44 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1403252 | NM_001080476.3(GRXCR1):c.717T>A (p.Cys239Ter) | Pathogenic |
| 1456962 | NC_000004.12:g.43030359AG[2] | Pathogenic |
| 1699340 | NM_001080476.3(GRXCR1):c.550G>T (p.Glu184Ter) | Pathogenic |
| 2444002 | NM_001080476.3(GRXCR1):c.457T>G (p.Phe153Val) | Pathogenic |
| 3347037 | NM_001080476.3(GRXCR1):c.568C>T (p.Arg190Ter) | Pathogenic |
| 3601164 | NM_001080476.3(GRXCR1):c.181C>T (p.Gln61Ter) | Pathogenic |
| 3601166 | NM_001080476.3(GRXCR1):c.672del (p.Asp225fs) | Pathogenic |
| 504921 | NM_001080476.3(GRXCR1):c.594_597dup (p.Val200fs) | Pathogenic |
| 522426 | NM_001080476.3(GRXCR1):c.385-2A>G | Pathogenic |
| 687258 | GRCh37/hg19 4p13(chr4:42922101-43379430)x1 | Pathogenic |
| 2445639 | NM_001080476.3(GRXCR1):c.668T>A (p.Leu223Gln) | Likely pathogenic |
| 3347669 | NM_001080476.3(GRXCR1):c.169del (p.Asp57fs) | Likely pathogenic |
| 3772638 | GRCh37/hg19 4p13(chr4:42964909-42965151)x0 | Likely pathogenic |
| 505242 | NM_001080476.3(GRXCR1):c.784C>T (p.Arg262Ter) | Likely pathogenic |
SpliceAI
1245 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:42962887:TTCA:T | acceptor_loss | 1.0000 |
| 4:42962889:CA:C | acceptor_loss | 1.0000 |
| 4:42962890:A:AG | acceptor_gain | 1.0000 |
| 4:42962890:A:C | acceptor_loss | 1.0000 |
| 4:42962891:G:GA | acceptor_gain | 1.0000 |
| 4:42962891:GC:G | acceptor_gain | 1.0000 |
| 4:42962891:GCA:G | acceptor_gain | 1.0000 |
| 4:42962891:GCAA:G | acceptor_gain | 1.0000 |
| 4:42962891:GCAAC:G | acceptor_gain | 1.0000 |
| 4:43030360:GAGA:G | acceptor_gain | 1.0000 |
| 4:42962893:A:AG | acceptor_gain | 0.9900 |
| 4:42963132:GGG:G | donor_gain | 0.9900 |
| 4:42963133:GG:G | donor_gain | 0.9900 |
| 4:42963133:GGG:G | donor_gain | 0.9900 |
| 4:42963134:GG:G | donor_gain | 0.9900 |
| 4:42963135:GTAA:G | donor_loss | 0.9900 |
| 4:42963136:TAAG:T | donor_loss | 0.9900 |
| 4:42963137:AAG:A | donor_loss | 0.9900 |
| 4:43030338:T:TA | acceptor_gain | 0.9900 |
| 4:43030346:T:TA | acceptor_gain | 0.9900 |
| 4:43030350:A:AG | acceptor_gain | 0.9900 |
| 4:43030351:C:G | acceptor_gain | 0.9900 |
| 4:43030358:CAGAG:C | acceptor_gain | 0.9900 |
| 4:43030359:A:AC | acceptor_loss | 0.9900 |
| 4:43030359:A:AG | acceptor_gain | 0.9900 |
| 4:43030359:AGAGA:A | acceptor_gain | 0.9900 |
| 4:43030360:G:GG | acceptor_gain | 0.9900 |
| 4:43030360:GA:G | acceptor_gain | 0.9900 |
| 4:43030360:GAGAG:G | acceptor_gain | 0.9900 |
| 4:42893405:GCC:G | donor_gain | 0.9800 |
AlphaMissense
1902 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:42962983:T:A | V159D | 1.000 |
| 4:42963102:C:T | P199S | 1.000 |
| 4:42963103:C:A | P199H | 1.000 |
| 4:42963103:C:G | P199R | 1.000 |
| 4:43020394:T:C | L223P | 1.000 |
| 4:43030415:T:C | C250R | 1.000 |
| 4:43030416:G:A | C250Y | 1.000 |
| 4:43030417:C:G | C250W | 1.000 |
| 4:43030424:T:A | C253S | 1.000 |
| 4:43030424:T:C | C253R | 1.000 |
| 4:43030425:G:A | C253Y | 1.000 |
| 4:43030425:G:C | C253S | 1.000 |
| 4:43030425:G:T | C253F | 1.000 |
| 4:43030426:C:G | C253W | 1.000 |
| 4:43030431:G:A | G255E | 1.000 |
| 4:43030487:T:A | C274S | 1.000 |
| 4:43030487:T:C | C274R | 1.000 |
| 4:43030488:G:C | C274S | 1.000 |
| 4:43030496:T:A | C277S | 1.000 |
| 4:43030496:T:C | C277R | 1.000 |
| 4:43030497:G:A | C277Y | 1.000 |
| 4:43030497:G:C | C277S | 1.000 |
| 4:43030498:C:G | C277W | 1.000 |
| 4:43030509:G:A | G281D | 1.000 |
| 4:43030512:T:C | L282P | 1.000 |
| 4:42893319:T:C | F18S | 0.999 |
| 4:42962931:T:G | Y142D | 0.999 |
| 4:42962964:T:C | F153L | 0.999 |
| 4:42962966:T:A | F153L | 0.999 |
| 4:42962966:T:G | F153L | 0.999 |
dbSNP variants (sampled 300 via entrez): RS10000073 (4:43020205 T>C,G), RS1000035912 (4:42991863 GCA>G), RS10000398 (4:43026677 A>G,T), RS10000827 (4:43020931 T>A), RS1000083677 (4:42988978 C>G), RS1000091818 (4:42998874 T>A,C), RS10001179 (4:42980506 T>C), RS1000119080 (4:42913806 G>A,T), RS1000128719 (4:43025311 T>C), RS1000138721 (4:42905192 C>T), RS1000175301 (4:42910975 T>C), RS1000191678 (4:42965423 C>G,T), RS1000206363 (4:42910632 C>T), RS1000206513 (4:43030892 G>A), RS1000253301 (4:42993179 G>A,C)
Disease associations
OMIM: gene MIM:613283 | disease phenotypes: MIM:613285, MIM:181500, MIM:220290, MIM:607197
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive nonsyndromic hearing loss 25 | Definitive | Autosomal recessive |
| nonsyndromic genetic hearing loss | Definitive | Autosomal recessive |
| hearing loss, autosomal recessive | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| nonsyndromic genetic hearing loss | Definitive | AR |
Mondo (5): autosomal recessive nonsyndromic hearing loss 25 (MONDO:0013210), schizophrenia (MONDO:0005090), hearing loss, autosomal recessive (MONDO:0019588), hearing loss disorder (MONDO:0005365), nonsyndromic genetic hearing loss (MONDO:0019497)
Orphanet (4): Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), Rare genetic deafness (Orphanet:96210), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
5 total (6 of 5 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000365 | Hearing impairment |
| HP:0000408 | Progressive sensorineural hearing impairment |
| HP:0001751 | Abnormal vestibular function |
| HP:0003577 | Congenital onset |
| HP:0100753 | Schizophrenia |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_52 | Obesity-related traits | 7.000000e-06 |
| GCST002666_5 | Interferon alpha levels in systemic lupus erythematosus | 2.000000e-06 |
| GCST003830_45 | Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1) | 8.000000e-07 |
| GCST004125_6 | Type 2 diabetes (age of onset) | 2.000000e-06 |
| GCST006575_31 | Takayasu arteritis | 2.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006517 | interferon alpha measurement |
| EFO:0005921 | FEV change measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| C564609 | Deafness, Autosomal Recessive (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
8 total (human), top 8 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| perfluorooctanoic acid | increases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| perfluorohexanesulfonic acid | increases expression | 1 |
| bisphenol S | increases methylation | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Rotenone | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | PHASE4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | PHASE4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | PHASE4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | PHASE4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
Related Atlas pages
- Associated diseases: autosomal recessive nonsyndromic hearing loss 25, nonsyndromic genetic hearing loss, hearing loss, autosomal recessive
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive nonsyndromic hearing loss 25, hearing loss, autosomal recessive, nonsyndromic genetic hearing loss, Takayasu arteritis