GTF2A1-AS1

Summary

GTF2A1-AS1 (GTF2A1 antisense RNA 1, HGNC:56195) is a long non-coding RNA gene on chromosome 14q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56195
Approved symbol	GTF2A1-AS1
Name	GTF2A1 antisense RNA 1
Location	14q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273783
Ensembl biotype	lncRNA
Entrez	101928504
RNAcentral	URS0000A7688D — lncRNA, 2050 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000618431, ENST00000691294, ENST00000819883, ENST00000819884, ENST00000819885, ENST00000819886, ENST00000819887, ENST00000819888

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000618431 — 2 exons

Exon	Start	End
ENSE00004225260	81221639	81223387
ENSE00004225263	81221039	81221525

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 90.48.

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.48	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.04	gold quality
left testis	UBERON:0004533	74.85	gold quality
right testis	UBERON:0004534	74.35	gold quality
testis	UBERON:0000473	73.47	gold quality
islet of Langerhans	UBERON:0000006	69.50	gold quality
bone marrow cell	CL:0002092	68.57	silver quality
ventricular zone	UBERON:0003053	66.77	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	64.55	gold quality
spinal cord	UBERON:0002240	62.37	gold quality
sperm	CL:0000019	61.88	silver quality
right adrenal gland	UBERON:0001233	61.46	gold quality
right adrenal gland cortex	UBERON:0035827	61.26	gold quality
leukocyte	CL:0000738	60.97	gold quality
monocyte	CL:0000576	60.69	gold quality
ganglionic eminence	UBERON:0004023	60.56	gold quality
cortical plate	UBERON:0005343	60.46	gold quality
right uterine tube	UBERON:0001302	60.41	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.22	gold quality
left adrenal gland	UBERON:0001234	60.15	gold quality
apex of heart	UBERON:0002098	60.04	gold quality
prefrontal cortex	UBERON:0000451	59.98	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.65	gold quality
left adrenal gland cortex	UBERON:0035825	59.21	gold quality
adrenal gland	UBERON:0002369	58.68	gold quality
left coronary artery	UBERON:0001626	58.63	gold quality
adrenal cortex	UBERON:0001235	58.25	gold quality
pancreas	UBERON:0001264	57.88	gold quality
lymph node	UBERON:0000029	57.86	gold quality
coronary artery	UBERON:0001621	57.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.