GZMK
gene geneOn this page
Also known as TRYP2PRSS
Summary
GZMK (granzyme K, HGNC:4711) is a protein-coding gene on chromosome 5q11.2, encoding Granzyme K (P49863). Serine protease that initiates the GZMK pathway of the complement system, a cascade of proteins directly activated by CD8(+) T-cells that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the adaptive immune system.
This gene product is a member of a group of related serine proteases from the cytoplasmic granules of cytotoxic lymphocytes. Cytolytic T lymphocytes (CTL) and natural killer (NK) cells share the remarkable ability to recognize, bind, and lyse specific target cells. They are thought to protect their host by lysing cells bearing on their surface ’nonself’ antigens, usually peptides or proteins resulting from infection by intracellular pathogens. The protein described here lacks consensus sequences for N-glycosylation present in other granzymes.
Source: NCBI Gene 3003 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 42 total
- Druggable target: yes
- MANE Select transcript:
NM_002104
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4711 |
| Approved symbol | GZMK |
| Name | granzyme K |
| Location | 5q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TRYP2, PRSS |
| Ensembl gene | ENSG00000113088 |
| Ensembl biotype | protein_coding |
| OMIM | 600784 |
| Entrez | 3003 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 retained_intron
ENST00000231009, ENST00000512089
RefSeq mRNA: 1 — MANE Select: NM_002104
NM_002104
CCDS: CCDS3964
Canonical transcript exons
ENST00000231009 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000743501 | 55024660 | 55024807 |
| ENSE00000743506 | 55030434 | 55030584 |
| ENSE00000743511 | 55031364 | 55031633 |
| ENSE00000815160 | 55024256 | 55024386 |
| ENSE00000815161 | 55033765 | 55034570 |
Expression profiles
Bgee: expression breadth ubiquitous, 195 present calls, max score 94.47.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 9.2094 / max 1640.0916, expressed in 160 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 56458 | 9.1696 | 159 |
| 56459 | 0.0398 | 6 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lymph node | UBERON:0000029 | 94.47 | gold quality |
| granulocyte | CL:0000094 | 94.42 | gold quality |
| spleen | UBERON:0002106 | 89.36 | gold quality |
| blood | UBERON:0000178 | 88.10 | gold quality |
| vermiform appendix | UBERON:0001154 | 87.08 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.27 | gold quality |
| gall bladder | UBERON:0002110 | 84.04 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 83.44 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 83.43 | gold quality |
| nasopharynx | UBERON:0001728 | 83.41 | gold quality |
| thymus | UBERON:0002370 | 82.96 | gold quality |
| caecum | UBERON:0001153 | 82.95 | gold quality |
| bone marrow | UBERON:0002371 | 81.82 | gold quality |
| superficial temporal artery | UBERON:0001614 | 81.44 | gold quality |
| olfactory bulb | UBERON:0002264 | 81.10 | gold quality |
| type B pancreatic cell | CL:0000169 | 80.97 | gold quality |
| decidua | UBERON:0002450 | 79.68 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 79.16 | silver quality |
| ileal mucosa | UBERON:0000331 | 77.51 | gold quality |
| cervix epithelium | UBERON:0004801 | 77.20 | silver quality |
| tongue squamous epithelium | UBERON:0006919 | 75.91 | gold quality |
| bone marrow cell | CL:0002092 | 75.38 | gold quality |
| rectum | UBERON:0001052 | 75.02 | gold quality |
| tonsil | UBERON:0002372 | 74.38 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 74.14 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 72.88 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 72.63 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 72.46 | gold quality |
| parietal pleura | UBERON:0002400 | 72.13 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 70.57 | gold quality |
Single-cell (SCXA)
Detected in 29 experiment(s), a significant marker in 27.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-85 | yes | 2824.94 |
| E-GEOD-139324 | yes | 2742.74 |
| E-CURD-120 | yes | 2716.07 |
| E-MTAB-8410 | yes | 2542.50 |
| E-HCAD-36 | yes | 2461.07 |
| E-CURD-79 | yes | 2090.64 |
| E-GEOD-106540 | yes | 1729.82 |
| E-CURD-95 | yes | 1724.88 |
| E-MTAB-8207 | yes | 1703.81 |
| E-MTAB-8530 | yes | 1688.09 |
| E-CURD-46 | yes | 1676.70 |
| E-CURD-122 | yes | 1453.82 |
| E-HCAD-4 | yes | 1211.68 |
| E-CURD-84 | yes | 1114.64 |
| E-MTAB-8911 | yes | 1103.39 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
34 targeting GZMK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
| HSA-MIR-130A-3P | 99.90 | 73.31 | 1861 |
| HSA-MIR-130B-3P | 99.90 | 73.27 | 1850 |
| HSA-MIR-301A-3P | 99.90 | 73.15 | 1839 |
| HSA-MIR-301B-3P | 99.90 | 73.19 | 1836 |
| HSA-MIR-3666 | 99.90 | 73.24 | 1833 |
| HSA-MIR-4295 | 99.90 | 73.11 | 1838 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-519A-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519B-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519C-3P | 99.67 | 71.67 | 1870 |
| HSA-MIR-4276 | 99.56 | 67.66 | 2514 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
| HSA-MIR-6882-5P | 99.35 | 71.13 | 1206 |
| HSA-MIR-145-3P | 99.33 | 67.66 | 764 |
| HSA-MIR-499A-3P | 99.18 | 69.20 | 1392 |
| HSA-MIR-499B-3P | 99.18 | 69.27 | 1391 |
| HSA-MIR-5190 | 99.15 | 67.76 | 1234 |
| HSA-MIR-4650-3P | 99.01 | 68.39 | 1062 |
| HSA-MIR-3194-3P | 98.83 | 66.22 | 1167 |
| HSA-MIR-4451 | 98.82 | 68.17 | 1455 |
Literature-anchored findings (GeneRIF, showing 20)
- The 2.2-A crystal structure reveals a rigid zymogen with unusual features (PMID:12384499)
- The present findings thus introduce the possibility that human beta-tryptase, after mast cell degranulation and exposure to neutral pH in the tissue, may dissociate into active monomers with properties that are distinct from the tetrameric counterpart. (PMID:12387726)
- We found human GzmK triggers rapid cell death independently of caspase activation. The features of death are characterized by rapid externalization of phosphatidylserine, nuclear morphological changes and single-stranded DNA nicks. (PMID:17008916)
- GzmK-induced caspase-independent death occurs through Bid-dependent mitochondrial damage that is different from GzmA (PMID:17308307)
- Rsults indicate that plasma levels of Granzyme K could serve as a useful diagnostic marker to stage sepsis, permitting better classification, specific treatments of patients, and may play a functional role in the development of sepsis. (PMID:17438453)
- GrK not only constitutes a redundant functional backup mechanism that assists GrA-induced cell death but that it also displays a unique function by cleaving its own specific substrates. (PMID:19059912)
- p53 is as a cytotoxic bomb that can be triggered by granzyme K, leading to potentiating killing efficacy. (PMID:19201868)
- Gr3 proenzymes is activated by cathepsin C which concomitantly decreased the molecular weight to that of active Gr3. (PMID:20377743)
- Granzyme K plays an important physiological role in immunoregulation of adaptive immunity underlying the cytotoxicity of CD56(bright) natural killer (NK) cells toward activated T cells. (PMID:21666061)
- Extracellular GrK is an unexpected direct modulator of lipopolysaccharide-TLR4 signaling during the antimicrobial innate immune response. (PMID:24711407)
- Data indicate N-terminomics on the human and mouse granzymes A and K by combined fractional diagonal chromatography (COFRADIC). (PMID:25383893)
- Carbamate pesticides significantly reduced the intracellular levels of perforin, GrA, GrB, Gr3/K, and GRN in NK-92CI cells. (PMID:25921628)
- Extracellular granzyme K mediates endothelial activation through the cleavage of PAR-1. (PMID:26936634)
- GzmK induced IL-6 expression in keratinocytes and skin fibroblasts that was dependent on PAR-1 activation. Re-epithelialization showed the greatest degree of improvement of all healing parameters, suggesting that keratinocytes are sensitive to GzmK-mediated proteolysis. In support, keratinocytes, but not skin fibroblasts, exposed to GzmK showed impaired wound healing in vitro (PMID:30395844)
- We here provide ex vivo evidence that CCR5highGZMK+CD4+ effector memory T cells are involved in immune surveillance during homeostasis, but could also play a role in pathology (PMID:31563951)
- Granzyme K contributes to endothelial microvascular damage and leakage during skin inflammation. (PMID:36652225)
- Human Granzyme K Is a Feature of Innate T Cells in Blood, Tissues, and Tumors, Responding to Cytokines Rather than TCR Stimulation. (PMID:37449888)
- Granzyme K- and amphiregulin-expressing cytotoxic T cells and activated extrafollicular B cells are potential drivers of IgG4-related disease. (PMID:38092138)
- High expression of angiotensin-converting enzyme 2 receptor (ACE-2), transmembrane protease serine (TMPRSS), and P-selectin in platelets lead to thrombosis formation in COVID-19 patients. (PMID:38497867)
- Granzyme K mediates IL-23-dependent inflammation and keratinocyte proliferation in psoriasis. (PMID:38903528)
Cross-species orthologs
13 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Gzmk | ENSMUSG00000042385 |
| rattus_norvegicus | Gzmk | ENSRNOG00000010661 |
| drosophila_melanogaster | CG14780 | FBGN0025383 |
| drosophila_melanogaster | CG14227 | FBGN0031058 |
| drosophila_melanogaster | CG11664 | FBGN0040341 |
| drosophila_melanogaster | CG30287 | FBGN0050287 |
| drosophila_melanogaster | CG30288 | FBGN0050288 |
| drosophila_melanogaster | CG30289 | FBGN0050289 |
| drosophila_melanogaster | CG30414 | FBGN0050414 |
| drosophila_melanogaster | CG31205 | FBGN0051205 |
| drosophila_melanogaster | CG33225 | FBGN0053225 |
| drosophila_melanogaster | CG33226 | FBGN0069056 |
| drosophila_melanogaster | CG30283 | FBGN0260477 |
Paralogs (5): HGF (ENSG00000019991), PIK3IP1 (ENSG00000100100), GZMA (ENSG00000145649), HABP2 (ENSG00000148702), MST1 (ENSG00000173531)
Protein
Protein identifiers
Granzyme K — P49863 (reviewed: P49863)
Alternative names: Fragmentin-3, Granzyme-3, NK-tryptase-2
All UniProt accessions (1): P49863
UniProt curated annotations — full annotation on UniProt →
Function. Serine protease that initiates the GZMK pathway of the complement system, a cascade of proteins directly activated by CD8(+) T-cells that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the adaptive immune system. GZMK is specifically secreted by CD8(+) T-cells and mediates both recognition and initiation steps of GZMK complement pathway. First acts as a pattern recognition receptor, which specifically recognizes and binds heparan sulfate glycosaminoglycans on the pathogen surface to drive opsonization. It then initiates the complement pathway cascade by catalyzing cleavage and activation of C2 and C4, the next components of the complement pathway. GZMK-mediated complement activation is an important contributor to tissue inflammation. Also able to cleave and activate F2R/PAR1 and PAR2/F2RL1, possibly promoting interleukin release. May also regulate apoptosis by catalyzing cleavage and activation of BID, thereby promoting cytochrome C release from mitochrondria.
Subcellular location. Secreted. Cell surface. Cytoplasmic granule.
Tissue specificity. Specifically expressed by CD8(+) T-cells.
Activity regulation. Specifically inhibited by D-Phe-Pro-Arg-chloromethylketone (PPACK) synthetic drug.
Similarity. Belongs to the peptidase S1 family. Granzyme subfamily.
RefSeq proteins (1): NP_002095* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001254 | Trypsin_dom | Domain |
| IPR001314 | Peptidase_S1A | Family |
| IPR009003 | Peptidase_S1_PA | Homologous_superfamily |
| IPR018114 | TRYPSIN_HIS | Active_site |
| IPR033116 | TRYPSIN_SER | Active_site |
| IPR043504 |
Pfam: PF00089
Enzyme classification (BRENDA):
- EC 3.4.21.B4 — (BRENDA: organisms, substrates, inhibitors, Km, kcat entries)
UniProt features (33 total): strand 15, disulfide bond 4, helix 3, active site 3, sequence conflict 2, signal peptide 1, propeptide 1, mutagenesis site 1, chain 1, turn 1, domain 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1MZA | X-RAY DIFFRACTION | 2.23 |
| 1MZD | X-RAY DIFFRACTION | 2.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49863-F1 | 85.32 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 67 (charge relay system); 116 (charge relay system); 214 (charge relay system)
Disulfide bonds (4): 210–234, 52–68, 149–220, 181–199
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 214 | abolished serine protease activity, preventing activation of the gzmk complement pathway. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 232 (showing top):
BROWNE_HCMV_INFECTION_30MIN_DN, MODULE_172, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_INFLAMMATORY_RESPONSE, MODULE_45, MODULE_128, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, WIELAND_UP_BY_HBV_INFECTION, GOBP_POSITIVE_REGULATION_OF_RELEASE_OF_CYTOCHROME_C_FROM_MITOCHONDRIA, GOLDRATH_ANTIGEN_RESPONSE, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_REGULATION_OF_MITOCHONDRION_ORGANIZATION, GOBP_REGULATION_OF_IMMUNE_RESPONSE
GO Biological Process (11): opsonization (GO:0008228), zymogen activation (GO:0031638), positive regulation of inflammatory response (GO:0050729), protein maturation (GO:0051604), positive regulation of release of cytochrome c from mitochondria (GO:0090200), granzyme-mediated programmed cell death signaling pathway (GO:0140507), complement activation, GZMK pathway (GO:0160257), activation of membrane attack complex (GO:0001905), proteolysis (GO:0006508), complement activation (GO:0006956), killing of cells of another organism (GO:0031640)
GO Molecular Function (7): serine-type endopeptidase activity (GO:0004252), glycosaminoglycan binding (GO:0005539), serine-type peptidase activity (GO:0008236), pattern recognition receptor activity (GO:0038187), protein binding (GO:0005515), peptidase activity (GO:0008233), hydrolase activity (GO:0016787)
GO Cellular Component (3): obsolete extracellular space (GO:0005615), symbiont cell surface (GO:0106139), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| immune effector process | 2 |
| protein metabolic process | 2 |
| complement activation | 2 |
| phagocytosis, recognition | 1 |
| protein processing | 1 |
| inflammatory response | 1 |
| positive regulation of defense response | 1 |
| positive regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| gene expression | 1 |
| release of cytochrome c from mitochondria | 1 |
| positive regulation of organelle organization | 1 |
| regulation of release of cytochrome c from mitochondria | 1 |
| signal transduction | 1 |
| programmed cell death | 1 |
| innate immune response | 1 |
| activation of immune response | 1 |
| humoral immune response | 1 |
| protein activation cascade | 1 |
| cell killing | 1 |
| disruption of cell in another organism | 1 |
| endopeptidase activity | 1 |
| serine-type peptidase activity | 1 |
| carbohydrate derivative binding | 1 |
| peptidase activity | 1 |
| serine hydrolase activity | 1 |
| signaling receptor activity | 1 |
| binding | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| catalytic activity | 1 |
| other organism part | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1980 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| GZMK | MSMB | P08118 | 980 |
| GZMK | PRF1 | P14222 | 793 |
| GZMK | CD3D | P04234 | 739 |
| GZMK | CCR7 | P32248 | 722 |
| GZMK | NKG7 | Q16617 | 712 |
| GZMK | KLRB1 | Q12918 | 694 |
| GZMK | CCL5 | P13501 | 675 |
| GZMK | GNLY | P09325 | 672 |
| GZMK | CD69 | Q07108 | 665 |
| GZMK | CCL4 | P13236 | 639 |
| GZMK | CD8A | P01732 | 621 |
| GZMK | CCR5 | P51681 | 605 |
| GZMK | TIGIT | Q495A1 | 598 |
| GZMK | XCL1 | P47992 | 594 |
| GZMK | EOMES | O95936 | 583 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GZMK | TMBIM6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GZMK | LIG4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GZMK | PNKP | psi-mi:“MI:0915”(physical association) | 0.370 |
| GZMK | ITGB7 | psi-mi:“MI:0914”(association) | 0.350 |
| TMBIM6 | GZMK | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (22): TMBIM6 (Two-hybrid), IGSF21 (Affinity Capture-MS), ITGB7 (Affinity Capture-MS), GZMM (Negative Genetic), VCP (Affinity Capture-MS), SET (Affinity Capture-MS), VCP (Affinity Capture-Western), GZMK (Affinity Capture-Western), VCP (Biochemical Activity), SET (Biochemical Activity), NPLOC4 (Biochemical Activity), UFD1L (Biochemical Activity), SET (Biochemical Activity), ACTG1 (Biochemical Activity), TUBB3 (Biochemical Activity)
ESM2 similar proteins: O35164, O35205, P00752, P00755, P00756, P00770, P04071, P04187, P07628, P07647, P08882, P08883, P08884, P09582, P09650, P11032, P11033, P11034, P12544, P13366, P15119, P15946, P15948, P15949, P18291, P21812, P21844, P36368, P36369, P36373, P36374, P36375, P36376, P43430, P49863, P49864, P50339, P50340, P50341, P85202
Diamond homologs: A7WPL7, O35164, O35205, O46683, O60259, O88780, P00746, P00752, P00760, P00761, P00762, P00763, P00764, P00770, P00772, P00773, P04187, P06870, P06871, P07146, P07288, P08311, P08426, P08882, P08883, P08884, P09582, P09650, P10144, P11032, P11033, P11034, P12323, P12544, P12788, P13366, P15119, P16049, P17977, P18291
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
42 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 31 |
| Likely benign | 7 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
446 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:55024325:GAC:G | donor_gain | 0.9900 |
| 5:55024327:C:CG | donor_gain | 0.9800 |
| 5:55024327:C:G | donor_gain | 0.9800 |
| 5:55024383:GTGT:G | donor_gain | 0.9800 |
| 5:55027440:T:G | donor_gain | 0.9800 |
| 5:55024804:ATCGG:A | donor_loss | 0.9700 |
| 5:55024805:TCGGT:T | donor_loss | 0.9700 |
| 5:55024806:CGG:C | donor_loss | 0.9700 |
| 5:55024807:GGTGA:G | donor_loss | 0.9700 |
| 5:55024808:G:GG | donor_gain | 0.9700 |
| 5:55024808:GTGA:G | donor_loss | 0.9700 |
| 5:55024809:T:TC | donor_loss | 0.9700 |
| 5:55024810:GAG:G | donor_loss | 0.9700 |
| 5:55033763:AG:A | acceptor_gain | 0.9700 |
| 5:55033764:GG:G | acceptor_gain | 0.9700 |
| 5:55024385:GT:G | donor_gain | 0.9600 |
| 5:55024387:G:GG | donor_gain | 0.9600 |
| 5:55024811:AGT:A | donor_loss | 0.9600 |
| 5:55027484:G:GT | donor_gain | 0.9600 |
| 5:55024812:G:C | donor_loss | 0.9500 |
| 5:55027470:G:GT | donor_gain | 0.9500 |
| 5:55031354:A:AG | acceptor_gain | 0.9500 |
| 5:55031362:A:AG | acceptor_gain | 0.9500 |
| 5:55031363:G:GG | acceptor_gain | 0.9500 |
| 5:55024654:TTGTA:T | acceptor_loss | 0.9400 |
| 5:55024655:TGTA:T | acceptor_loss | 0.9400 |
| 5:55024656:GTA:G | acceptor_loss | 0.9400 |
| 5:55024657:TA:T | acceptor_loss | 0.9400 |
| 5:55024658:A:C | acceptor_loss | 0.9400 |
| 5:55024659:G:GA | acceptor_loss | 0.9400 |
AlphaMissense
1714 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:55031462:G:C | W154C | 0.996 |
| 5:55031462:G:T | W154C | 0.996 |
| 5:55031541:T:A | C181S | 0.995 |
| 5:55031542:G:C | C181S | 0.995 |
| 5:55031595:T:A | C199S | 0.991 |
| 5:55031596:G:C | C199S | 0.991 |
| 5:55033890:G:C | W253C | 0.988 |
| 5:55033890:G:T | W253C | 0.988 |
| 5:55031460:T:A | W154R | 0.986 |
| 5:55031460:T:C | W154R | 0.986 |
| 5:55031542:G:A | C181Y | 0.985 |
| 5:55024797:T:A | C68S | 0.984 |
| 5:55024798:G:C | C68S | 0.984 |
| 5:55024722:T:C | S43P | 0.983 |
| 5:55031445:T:A | C149S | 0.983 |
| 5:55031446:G:C | C149S | 0.983 |
| 5:55024713:T:C | F40L | 0.982 |
| 5:55024715:T:A | F40L | 0.982 |
| 5:55024715:T:G | F40L | 0.982 |
| 5:55031506:G:C | R169P | 0.982 |
| 5:55024749:T:A | C52S | 0.981 |
| 5:55024750:G:C | C52S | 0.981 |
| 5:55033769:A:T | D213V | 0.981 |
| 5:55033774:G:T | G215W | 0.980 |
| 5:55033775:G:T | G215V | 0.980 |
| 5:55031595:T:C | C199R | 0.978 |
| 5:55024783:T:C | L63P | 0.977 |
| 5:55033768:G:C | D213H | 0.977 |
| 5:55033769:A:C | D213A | 0.977 |
| 5:55033770:C:A | D213E | 0.977 |
dbSNP variants (sampled 300 via entrez): RS1000210696 (5:55022365 A>G), RS1000452940 (5:55026289 A>G), RS1000602596 (5:55029659 T>C), RS1000817616 (5:55024053 G>A), RS1001166469 (5:55023859 T>C), RS1001605931 (5:55031060 A>G,T), RS1001659807 (5:55031286 G>A), RS1001773093 (5:55025246 C>G), RS1002379904 (5:55027663 G>T), RS1002665974 (5:55032832 T>C), RS1002735744 (5:55027939 C>T), RS1002895960 (5:55024606 C>T), RS1003181056 (5:55026593 G>A), RS1003282652 (5:55022518 T>A,G), RS1003379756 (5:55029119 C>A)
Disease associations
OMIM: gene MIM:600784 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006585_2475 | Blood protein levels | 4.000000e-07 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4930 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — S1: Chymotrypsin
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, decreases methylation | 2 |
| testosterone undecanoate | increases expression | 1 |
| sodium arsenite | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| bisphenol S | decreases methylation | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Rosuvastatin Calcium | decreases reaction, increases expression | 1 |
| Choline | affects expression | 1 |
| Dichlorvos | decreases expression | 1 |
| Endosulfan | decreases expression, decreases reaction | 1 |
| Lipopolysaccharides | increases expression, decreases expression, decreases reaction | 1 |
| Nickel | increases expression | 1 |
| Tetrachlorodibenzodioxin | decreases expression, decreases reaction | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Zinc | decreases expression | 1 |
| Ziram | decreases expression | 1 |
| Sodium Selenite | increases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
ChEMBL screening assays
9 unique, capped per target: 8 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4344610 | Binding | Substrate activity at Granzyme K (unknown origin) expressed in Pichia pastoris incubated for 30 mins by fluorescence based assay | Detection of Active Granzyme A in NK92 Cells with Fluorescent Activity-Based Probe. — J Med Chem |
| CHEMBL768125 | Functional | Amount of proteinase K required to release folin positive amino acids at a substrate concentration of 304 uM | The stability of pseudopeptides bearing sulfoximines as chiral backbone modifying element towards proteinase K. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.