H3-3A-DT

Summary

H3-3A-DT (H3-3A divergent transcript, HGNC:55210) is a long non-coding RNA gene on chromosome 1q42.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55210
Approved symbol	H3-3A-DT
Name	H3-3A divergent transcript
Location	1q42.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272562
Ensembl biotype	lncRNA
Entrez	118568813
RNAcentral	URS00026A1EBB — lncRNA, 1766 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000609423, ENST00000658138, ENST00000759722, ENST00000759723, ENST00000759724

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609423 — 2 exons

Exon	Start	End
ENSE00004112706	226060712	226061081
ENSE00004112714	226061757	226062069

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 81.70.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.70	gold quality
blood	UBERON:0000178	69.95	gold quality
corpus callosum	UBERON:0002336	68.60	gold quality
calcaneal tendon	UBERON:0003701	67.56	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	66.78	gold quality
cortical plate	UBERON:0005343	66.62	gold quality
rectum	UBERON:0001052	66.51	gold quality
endometrium	UBERON:0001295	66.01	gold quality
ventricular zone	UBERON:0003053	65.25	gold quality
ganglionic eminence	UBERON:0004023	65.00	gold quality
left ovary	UBERON:0002119	64.84	gold quality
bone marrow	UBERON:0002371	64.79	gold quality
ovary	UBERON:0000992	64.68	gold quality
right uterine tube	UBERON:0001302	64.23	gold quality
substantia nigra	UBERON:0002038	63.91	gold quality
right testis	UBERON:0004534	63.46	gold quality
skeletal muscle tissue	UBERON:0001134	63.37	gold quality
right ovary	UBERON:0002118	63.30	gold quality
urinary bladder	UBERON:0001255	63.29	gold quality
lymph node	UBERON:0000029	63.13	gold quality
testis	UBERON:0000473	62.84	gold quality
tonsil	UBERON:0002372	62.61	gold quality
right lobe of thyroid gland	UBERON:0001119	62.59	gold quality
left testis	UBERON:0004533	62.57	gold quality
thyroid gland	UBERON:0002046	62.56	gold quality
myometrium	UBERON:0001296	62.45	gold quality
bone marrow cell	CL:0002092	62.34	silver quality
monocyte	CL:0000576	62.26	gold quality
duodenum	UBERON:0002114	62.20	gold quality
putamen	UBERON:0001874	62.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.