HAO2-IT1

Summary

HAO2-IT1 (HAO2 intronic transcript 1, HGNC:41342) is a long non-coding RNA gene on chromosome 1p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41342
Approved symbol	HAO2-IT1
Name	HAO2 intronic transcript 1
Location	1p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230921
Ensembl biotype	lncRNA
Entrez	100874270
RNAcentral	URS00005B433E — ncRNA, 311 nt, 2 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419144

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419144 — 2 exons

Exon	Start	End
ENSE00001614027	119368946	119369008
ENSE00001763846	119370084	119370331

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 73.89.

Top tissues by expression

68 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	73.89	gold quality
right lobe of liver	UBERON:0001114	71.14	gold quality
right adrenal gland cortex	UBERON:0035827	66.15	gold quality
right adrenal gland	UBERON:0001233	65.85	gold quality
adrenal gland	UBERON:0002369	64.61	gold quality
monocyte	CL:0000576	64.29	gold quality
left adrenal gland	UBERON:0001234	64.21	gold quality
prefrontal cortex	UBERON:0000451	62.81	gold quality
left adrenal gland cortex	UBERON:0035825	62.68	gold quality
blood	UBERON:0000178	61.61	gold quality
pancreas	UBERON:0001264	60.83	gold quality
superior frontal gyrus	UBERON:0002661	60.51	gold quality
body of pancreas	UBERON:0001150	60.50	gold quality
corpus callosum	UBERON:0002336	60.41	gold quality
kidney	UBERON:0002113	58.34	gold quality
adult mammalian kidney	UBERON:0000082	57.88	gold quality
small intestine	UBERON:0002108	57.54	gold quality
small intestine Peyer’s patch	UBERON:0003454	57.49	gold quality
cortex of kidney	UBERON:0001225	56.09	gold quality
Brodmann (1909) area 9	UBERON:0013540	55.33	gold quality
intestine	UBERON:0000160	54.49	gold quality
adenohypophysis	UBERON:0002196	54.16	gold quality
multicellular organism	UBERON:0000468	53.76	gold quality
tibial artery	UBERON:0007610	53.09	gold quality
right ovary	UBERON:0002118	51.81	gold quality
Ammon’s horn	UBERON:0001954	51.63	gold quality
frontal cortex	UBERON:0001870	51.42	gold quality
thoracic aorta	UBERON:0001515	51.27	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	51.27	gold quality
lower esophagus muscularis layer	UBERON:0035833	50.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.