HCCS-DT

Summary

HCCS-DT (HCCS divergent transcript, HGNC:55698) is a long non-coding RNA gene on chromosome Xp22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55698
Approved symbol	HCCS-DT
Name	HCCS divergent transcript
Location	Xp22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234129
Ensembl biotype	lncRNA
Entrez	121847985
RNAcentral	URS00026A27D5 — lncRNA, 2066 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000433747, ENST00000608176, ENST00000608576, ENST00000608916, ENST00000658066, ENST00000669054, ENST00000686676, ENST00000690117, ENST00000700761, ENST00000701147, ENST00000701330, ENST00000701415, ENST00000701437, ENST00000827679, ENST00000827680, ENST00000827681, ENST00000827682, ENST00000827683, ENST00000827684, ENST00000827685, ENST00000827686, ENST00000827687, ENST00000827688, ENST00000827689, ENST00000827690, ENST00000827691, ENST00000827692, ENST00000827693, ENST00000827694, ENST00000827695, ENST00000827696

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000433747 — 4 exons

Exon	Start	End
ENSE00001716533	11055936	11056036
ENSE00001769110	11106901	11106990
ENSE00004239858	10969703	10970538
ENSE00004239859	11110883	11111284

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 79.57.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.57	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.42	gold quality
colonic epithelium	UBERON:0000397	71.04	gold quality
ventricular zone	UBERON:0003053	68.72	gold quality
bone marrow cell	CL:0002092	67.45	silver quality
ganglionic eminence	UBERON:0004023	65.54	gold quality
skeletal muscle tissue	UBERON:0001134	63.70	gold quality
bone marrow	UBERON:0002371	62.85	gold quality
islet of Langerhans	UBERON:0000006	60.96	gold quality
tonsil	UBERON:0002372	60.44	gold quality
lymph node	UBERON:0000029	58.89	gold quality
sural nerve	UBERON:0015488	58.71	silver quality
blood	UBERON:0000178	58.55	gold quality
endometrium	UBERON:0001295	58.49	gold quality
adrenal tissue	UBERON:0018303	58.03	gold quality
calcaneal tendon	UBERON:0003701	56.83	gold quality
leukocyte	CL:0000738	56.24	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.16	gold quality
monocyte	CL:0000576	55.96	gold quality
duodenum	UBERON:0002114	55.71	gold quality
corpus callosum	UBERON:0002336	55.71	gold quality
prefrontal cortex	UBERON:0000451	55.37	gold quality
smooth muscle tissue	UBERON:0001135	54.65	gold quality
stromal cell of endometrium	CL:0002255	54.21	gold quality
vermiform appendix	UBERON:0001154	53.82	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.81	gold quality
pancreas	UBERON:0001264	53.77	gold quality
placenta	UBERON:0001987	53.53	gold quality
gall bladder	UBERON:0002110	52.21	gold quality
liver	UBERON:0002107	51.97	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.