HCG24

Summary

HCG24 (HLA complex group 24, HGNC:23500) is a long non-coding RNA gene on chromosome 6p21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:23500
Approved symbol	HCG24
Name	HLA complex group 24
Location	6p21
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ1033B10.15
Ensembl gene	ENSG00000230313
Ensembl biotype	lncRNA
Entrez	414768
RNAcentral	URS0000A76B5C — lncRNA, 1965 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000414398

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414398 — 2 exons

Exon	Start	End
ENSE00001744186	33147215	33147767
ENSE00001776277	33144783	33144946

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 80.84.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.84	silver quality
cerebellar cortex	UBERON:0002129	68.19	gold quality
cerebellar hemisphere	UBERON:0002245	68.15	gold quality
cerebellum	UBERON:0002037	68.03	gold quality
right hemisphere of cerebellum	UBERON:0014890	66.87	gold quality
cortical plate	UBERON:0005343	65.51	gold quality
ganglionic eminence	UBERON:0004023	60.80	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.09	gold quality
nucleus accumbens	UBERON:0001882	56.75	gold quality
bone marrow	UBERON:0002371	56.64	gold quality
vermiform appendix	UBERON:0001154	55.54	gold quality
brain	UBERON:0000955	55.50	gold quality
caudate nucleus	UBERON:0001873	55.06	gold quality
lymph node	UBERON:0000029	54.18	gold quality
hypothalamus	UBERON:0001898	54.07	gold quality
prefrontal cortex	UBERON:0000451	53.66	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.63	gold quality
Ammon’s horn	UBERON:0001954	53.18	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.03	gold quality
stromal cell of endometrium	CL:0002255	52.82	silver quality
body of pancreas	UBERON:0001150	52.23	gold quality
pancreas	UBERON:0001264	51.98	gold quality
amygdala	UBERON:0001876	51.79	gold quality
putamen	UBERON:0001874	51.52	gold quality
blood	UBERON:0000178	51.50	silver quality
monocyte	CL:0000576	51.33	silver quality
tonsil	UBERON:0002372	50.97	gold quality
cerebral cortex	UBERON:0000956	50.65	gold quality
multicellular organism	UBERON:0000468	50.40	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	50.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.