HDAC9-AS1

Summary

HDAC9-AS1 (HDAC9 antisense RNA 1, HGNC:40664) is a long non-coding RNA gene on chromosome 7p21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40664
Approved symbol	HDAC9-AS1
Name	HDAC9 antisense RNA 1
Location	7p21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226522
Ensembl biotype	lncRNA
Entrez	105375176
RNAcentral	URS000029C5E6 — lncRNA, 313 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000447057

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000447057 — 3 exons

Exon	Start	End
ENSE00001707776	18892560	18892640
ENSE00001738193	18892096	18892202
ENSE00001776957	18899309	18899433

Expression profiles

Bgee: expression breadth broad, 87 present calls, max score 73.89.

Top tissues by expression

87 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.89	gold quality
sural nerve	UBERON:0015488	68.42	gold quality
corpus callosum	UBERON:0002336	66.68	gold quality
bone marrow	UBERON:0002371	65.08	gold quality
skeletal muscle tissue	UBERON:0001134	64.46	gold quality
superior frontal gyrus	UBERON:0002661	61.23	gold quality
monocyte	CL:0000576	59.57	gold quality
liver	UBERON:0002107	59.09	gold quality
blood	UBERON:0000178	58.64	gold quality
muscle of leg	UBERON:0001383	58.43	gold quality
primary visual cortex	UBERON:0002436	58.04	gold quality
lymph node	UBERON:0000029	57.90	gold quality
left ovary	UBERON:0002119	56.61	gold quality
gastrocnemius	UBERON:0001388	56.57	gold quality
prefrontal cortex	UBERON:0000451	55.91	gold quality
heart	UBERON:0000948	55.23	gold quality
calcaneal tendon	UBERON:0003701	55.05	gold quality
adrenal gland	UBERON:0002369	54.25	silver quality
heart left ventricle	UBERON:0002084	53.90	gold quality
right lobe of liver	UBERON:0001114	53.80	gold quality
kidney	UBERON:0002113	53.38	gold quality
rectum	UBERON:0001052	52.70	gold quality
frontal cortex	UBERON:0001870	52.11	gold quality
body of pancreas	UBERON:0001150	51.95	gold quality
ascending aorta	UBERON:0001496	51.52	gold quality
thoracic aorta	UBERON:0001515	51.23	gold quality
adrenal tissue	UBERON:0018303	50.92	gold quality
stomach	UBERON:0000945	50.77	gold quality
popliteal artery	UBERON:0002250	50.70	gold quality
tibial artery	UBERON:0007610	50.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.