HDC
gene geneOn this page
Summary
HDC (histidine decarboxylase, HGNC:4855) is a protein-coding gene on chromosome 15q21.2, encoding Histidine decarboxylase (P19113). Catalyzes the biosynthesis of histamine from histidine.
This gene encodes a member of the group II decarboxylase family and forms a homodimer that converts L-histidine to histamine in a pyridoxal phosphate dependent manner. Histamine regulates several physiologic processes, including neurotransmission, gastric acid secretion,inflamation, and smooth muscle tone.
Source: NCBI Gene 3067 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Tourette syndrome (Limited, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 97 total — 2 pathogenic, 1 likely-pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_002112
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4855 |
| Approved symbol | HDC |
| Name | histidine decarboxylase |
| Location | 15q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000140287 |
| Ensembl biotype | protein_coding |
| OMIM | 142704 |
| Entrez | 3067 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 5 protein_coding, 4 retained_intron
ENST00000267845, ENST00000543581, ENST00000558679, ENST00000558761, ENST00000559190, ENST00000559683, ENST00000559816, ENST00000860523, ENST00000860524
RefSeq mRNA: 2 — MANE Select: NM_002112
NM_001306146, NM_002112
CCDS: CCDS10134, CCDS76754
Canonical transcript exons
ENST00000267845 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001120393 | 50252612 | 50252774 |
| ENSE00001120399 | 50253600 | 50253666 |
| ENSE00001120460 | 50265593 | 50265726 |
| ENSE00003516239 | 50257425 | 50257547 |
| ENSE00003519691 | 50258404 | 50258517 |
| ENSE00003536407 | 50254130 | 50254273 |
| ENSE00003542489 | 50241947 | 50243006 |
| ENSE00003557592 | 50263235 | 50263407 |
| ENSE00003591973 | 50254530 | 50254664 |
| ENSE00003592649 | 50252430 | 50252520 |
| ENSE00003602476 | 50248245 | 50248343 |
| ENSE00003631171 | 50243143 | 50243244 |
Expression profiles
Bgee: expression breadth ubiquitous, 178 present calls, max score 93.78.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 7.1190 / max 1393.5210, expressed in 140 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149855 | 6.5426 | 139 |
| 149858 | 0.5045 | 33 |
| 149854 | 0.0300 | 10 |
| 149857 | 0.0151 | 10 |
| 149856 | 0.0135 | 9 |
| 149853 | 0.0134 | 8 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gall bladder | UBERON:0002110 | 93.78 | gold quality |
| oocyte | CL:0000023 | 93.76 | gold quality |
| secondary oocyte | CL:0000655 | 93.06 | gold quality |
| cardia of stomach | UBERON:0001162 | 91.63 | gold quality |
| body of stomach | UBERON:0001161 | 87.32 | gold quality |
| fundus of stomach | UBERON:0001160 | 84.94 | gold quality |
| stomach | UBERON:0000945 | 84.65 | gold quality |
| corpus epididymis | UBERON:0004359 | 84.05 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 83.48 | gold quality |
| monocyte | CL:0000576 | 82.85 | gold quality |
| mononuclear cell | CL:0000842 | 82.58 | gold quality |
| rectum | UBERON:0001052 | 81.74 | gold quality |
| leukocyte | CL:0000738 | 81.22 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 81.20 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 80.13 | gold quality |
| lower esophagus | UBERON:0013473 | 80.12 | gold quality |
| right coronary artery | UBERON:0001625 | 80.08 | gold quality |
| upper lobe of lung | UBERON:0008948 | 79.68 | gold quality |
| skin of leg | UBERON:0001511 | 79.59 | gold quality |
| hypothalamus | UBERON:0001898 | 79.48 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 79.16 | gold quality |
| pylorus | UBERON:0001166 | 78.94 | gold quality |
| cauda epididymis | UBERON:0004360 | 78.83 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 78.21 | gold quality |
| vena cava | UBERON:0004087 | 77.83 | gold quality |
| vermiform appendix | UBERON:0001154 | 77.40 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 77.20 | gold quality |
| caecum | UBERON:0001153 | 77.16 | gold quality |
| skin of abdomen | UBERON:0001416 | 77.01 | gold quality |
| zone of skin | UBERON:0000014 | 76.74 | gold quality |
Single-cell (SCXA)
Detected in 22 experiment(s), a significant marker in 22.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9801 | yes | 7207.42 |
| E-MTAB-9067 | yes | 3328.39 |
| E-GEOD-130473 | yes | 3116.29 |
| E-MTAB-6678 | yes | 2582.62 |
| E-MTAB-9221 | yes | 2364.08 |
| E-MTAB-8221 | yes | 1337.44 |
| E-MTAB-6505 | yes | 1102.24 |
| E-MTAB-10042 | yes | 1056.98 |
| E-CURD-55 | yes | 878.53 |
| E-CURD-112 | yes | 820.99 |
| E-MTAB-7407 | yes | 538.81 |
| E-ANND-5 | yes | 532.77 |
| E-HCAD-1 | yes | 40.56 |
| E-CURD-88 | yes | 27.69 |
| E-MTAB-8142 | yes | 16.70 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, CDX1, CEBPB, FOS, GATA4, GATA6, HDAC7, HIF1A, IRF6, JUN, KAT5, KLF2, KLF4, MAFK, NFE2, NR0B2, SP1, SREBF1, YY1, ZHX2
miRNA regulators (miRDB)
22 targeting HDC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-580-3P | 99.67 | 69.23 | 1841 |
| HSA-MIR-670-5P | 99.67 | 69.94 | 1565 |
| HSA-MIR-4666B | 99.64 | 68.69 | 1282 |
| HSA-MIR-5689 | 99.50 | 71.26 | 1154 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-7849-3P | 99.47 | 68.17 | 1224 |
| HSA-MIR-5580-5P | 99.38 | 66.96 | 1139 |
| HSA-MIR-32-3P | 99.36 | 68.20 | 2517 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-3085-3P | 99.26 | 66.16 | 1490 |
| HSA-MIR-3064-5P | 99.26 | 66.13 | 1497 |
| HSA-MIR-6504-5P | 99.26 | 65.95 | 1487 |
| HSA-MIR-211-3P | 98.14 | 66.77 | 1052 |
| HSA-MIR-4715-5P | 97.62 | 67.47 | 506 |
| HSA-MIR-12128 | 96.67 | 66.98 | 1471 |
Literature-anchored findings (GeneRIF, showing 33)
- the elevation of HDC expression during human monocytic differentiation (PMID:11556524)
- HDC expression is regulated by gastrin through a complex cis-acting element, which binds at least three distinct nuclear factors (PMID:12372397)
- Histidine decarboxylase promoter activity can be repressed by kruppel-like factor 4 (PMID:14670968)
- histidine decarboxylase mRNA is found in human vascular smooth muscle and endothelial cells (PMID:15167966)
- HDC and histamine content were significantly higher in the tumor specimens (PMID:15928846)
- Chronic urticaria expresses high levels of HDC as compared to normal foreskin, breast skin and cultured human keratinocytes. (PMID:16297195)
- HDC expression and histamine production are increased in the superficial kidney cortex zone during pregnancy (PMID:16760908)
- Defective levels found in normal placenta compared with pre-eclampsia labor. (PMID:16822545)
- Synthesis of histamine was found to be restricted to the basophil compartment of the CML clone and to depend on signaling through the PI3-kinase pathway. CML cells also expressed histamine receptors (PMID:16849647)
- HDC SNP’s are significantly associated with age at natural menopause in Caucasian women. (PMID:16919600)
- the apparent occurrence of an unusual TG 3’ splice site in intron 4 is discussed (PMID:17672918)
- Histamine decarboxylase expressed in endothelial cells of microvessels might play a role in regulating angiogenesis in esophageal squamous cell carcinomas. (PMID:19133005)
- HFR was regulated by HIF-1 activation. Depletion of HIF-1alpha prevents hypoxic induction of HDC in BMMCs. Hypoxia induces HDC expression by transcriptional mechanisms dependent upon HIF-1. (PMID:19266161)
- identification of a rare functional mutation in the HDC gene encoding L-histidine decarboxylase, the rate-limiting enzyme in histamine biosynthesis which points to its role in Tourette’s syndrome and tics (PMID:20445167)
- The histidine decarboxylase allele Glu644 in homozygosity increases the risk of developing rhinitis in the studied population (PMID:20608921)
- Studies provide lead compounds for inhibitors of ornithine decarboxylase and human histidine decarboxylase. (PMID:21454364)
- The novel concept that an autocrine loop, consisting of enhanced histamine synthesis by histidine decarboxylase, sustains cholangiocarcinoma growth is proposed. (PMID:21873469)
- It was shown that for serum and urine, HDC levels achieved sensitivities and specificities compatible to or even greater than those of established biomarkers for the diagnosis of intestinal mucosal injury in patients with acute intestinal obstruction. (PMID:21915437)
- Variants in the HDC gene may play little or no role in Tourette Syndrome susceptibility in Chinese Han population. (PMID:22095709)
- crystal of histidine decarboxylase belonged to space group C2, with unit-cell parameters a = 215.16, b = 112.72, c = 171.39 A, beta = 110.3 degrees (PMID:22684068)
- Structural study reveals that Ser-354 determines substrate specificity on human histidine decarboxylase. (PMID:22767596)
- Data indicate that histidine decarboxylase (HDC) is expressed by neutrophils. (PMID:23572231)
- Investigated variation across the HDC (histidine decarboxylase) gene for association with Tourette Syndrome. (PMID:23825391)
- HDC production in the stomach is associated with bile acid exposure and its related transcriptional regulation network of FXR, SHP, and CDX1. (PMID:24415870)
- The findings indicate that polymorphisms of HDC gene were significantly associated with breast cancer in Chinese Han population and may be novel diagnostic or therapeutic targets for breast cancer. (PMID:24835231)
- HDC rs17740607 polymorphism is at least a partial loss-of-function variant and acts as a protective factor against chronic heart failure (PMID:25846768)
- Human enterochromaffin-like cells appear to partially co-express VMAT-2 and HDC. Co-expression of VMAT-2 and HDC might be required for increased histamine production in patients with gastric neuroendocrine tumors. (PMID:26715806)
- a Possible Role for the Histidine Decarboxylase Gene in Tourette Syndrome in the Chinese Han Population (PMID:27529419)
- Human histidine decarboxylase (HDC) and dopa decarboxilase (DDC) are highly homologous enzymes responsible for the synthesis of biogenic amines (BA) like histamine, and serotonin and dopamine, respectively. This review summarizes the analogies and differences in their origin as well as their common pathophysiological scenarios. [review] (PMID:27769832)
- Study of the antitumour effects and the modulation of immune response by histamine in breast cancer. (PMID:31748740)
- Expression of histidine decarboxylase in melanocytes of the human skin. (PMID:33340761)
- Correlation between histidine decarboxylase expression of keratinocytes and visual analogue scale in patients with atopic dermatitis. (PMID:34140200)
- The Hdc GC box is critical for Hdc gene transcription and histamine-mediated anaphylaxis. (PMID:36804390)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | hdc | ENSDARG00000075454 |
| mus_musculus | Hdc | ENSMUSG00000027360 |
| rattus_norvegicus | Hdc | ENSRNOG00000010262 |
| drosophila_melanogaster | Hdc | FBGN0005619 |
| caenorhabditis_elegans | WBGENE00006409 |
Paralogs (7): GAD1 (ENSG00000128683), DDC (ENSG00000132437), GAD2 (ENSG00000136750), CSAD (ENSG00000139631), GADL1 (ENSG00000144644), SGPL1 (ENSG00000166224), PDXDC1 (ENSG00000179889)
Protein
Protein identifiers
Histidine decarboxylase — P19113 (reviewed: P19113)
All UniProt accessions (2): P19113, H0YLF0
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the biosynthesis of histamine from histidine.
Subunit / interactions. Homodimer.
Pathway. Amine and polyamine biosynthesis; histamine biosynthesis; histamine from L-histidine: step 1/1.
Similarity. Belongs to the group II decarboxylase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P19113-1 | 1 | yes |
| P19113-2 | 2 |
RefSeq proteins (2): NP_001293075, NP_002103* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002129 | PyrdxlP-dep_de-COase | Domain |
| IPR010977 | Aromatic_deC | Family |
| IPR015421 | PyrdxlP-dep_Trfase_major | Homologous_superfamily |
| IPR015422 | PyrdxlP-dep_Trfase_small | Homologous_superfamily |
| IPR015424 | PyrdxlP-dep_Trfase | Homologous_superfamily |
| IPR021115 | Pyridoxal-P_BS | Binding_site |
Pfam: PF00282
Enzyme classification (BRENDA):
- EC 4.1.1.22 — histidine decarboxylase (BRENDA: 69 organisms, 43 substrates, 97 inhibitors, 39 Km, 9 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| L-HIS | 0.078–35 | 22 |
| L-HISTIDINE | 0.09–100 | 13 |
| 1-METHYL-DL-HISTIDINE | 5.8 | 1 |
| 3,4-DIHYDROXYPHENYLALANINE | 0.13 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- L-histidine + H(+) = histamine + CO2 (RHEA:20840)
UniProt features (58 total): helix 23, strand 14, turn 5, sequence variant 5, mutagenesis site 3, sequence conflict 3, binding site 2, chain 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4E1O | X-RAY DIFFRACTION | 1.8 |
| 7EIX | X-RAY DIFFRACTION | 1.9 |
| 7EIW | X-RAY DIFFRACTION | 2.1 |
| 7EIY | X-RAY DIFFRACTION | 2.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P19113-F1 | 81.01 | 0.73 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 81; 194
Post-translational modifications (1): 305
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 305 | loss of enzyme activity. |
| 334 | loss of enzyme activity. |
| 354 | strongly decreases affinity for histidine. strongly increases affinity for l-dopa and confers enzyme activity toward l-d |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-70921 | Histidine catabolism |
MSigDB gene sets: 183 (showing top):
GOBP_PHENOL_CONTAINING_COMPOUND_METABOLIC_PROCESS, LEE_NEURAL_CREST_STEM_CELL_DN, GOBP_PHENOL_CONTAINING_COMPOUND_BIOSYNTHETIC_PROCESS, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, KEGG_HISTIDINE_METABOLISM, FOSTER_TOLERANT_MACROPHAGE_UP, MARTINEZ_RB1_TARGETS_DN, RAMALHO_STEMNESS_DN, GOBP_AROMATIC_AMINO_ACID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_CATABOLIC_PROCESS, SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_UP, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_DN, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_CATABOLIC_PROCESS
GO Biological Process (7): histamine biosynthetic process (GO:0001694), obsolete L-histidine metabolic process (GO:0006547), L-histidine catabolic process (GO:0006548), catecholamine biosynthetic process (GO:0042423), amino acid metabolic process (GO:0006520), carboxylic acid metabolic process (GO:0019752), biogenic amine biosynthetic process (GO:0042401)
GO Molecular Function (6): histidine decarboxylase activity (GO:0004398), pyridoxal phosphate binding (GO:0030170), protein binding (GO:0005515), lyase activity (GO:0016829), carbon-carbon lyase activity (GO:0016830), carboxy-lyase activity (GO:0016831)
GO Cellular Component (2): cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| biogenic amine biosynthetic process | 2 |
| cellular anatomical structure | 2 |
| histamine metabolic process | 1 |
| aromatic amino acid catabolic process | 1 |
| imidazole-containing compound catabolic process | 1 |
| L-amino acid catabolic process | 1 |
| proteinogenic amino acid catabolic process | 1 |
| catecholamine metabolic process | 1 |
| catechol-containing compound biosynthetic process | 1 |
| primary metabolic process | 1 |
| oxoacid metabolic process | 1 |
| biogenic amine metabolic process | 1 |
| amine biosynthetic process | 1 |
| carboxy-lyase activity | 1 |
| anion binding | 1 |
| vitamin B6 binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| lyase activity | 1 |
| carbon-carbon lyase activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
2414 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HDC | HRH1 | P35367 | 798 |
| HDC | HRH2 | P25021 | 791 |
| HDC | HRH3 | Q9Y5N1 | 791 |
| HDC | GAST | P01350 | 731 |
| HDC | HRH4 | Q9H3N8 | 729 |
| HDC | SLITRK1 | Q96PX8 | 725 |
| HDC | IMMP2L | Q96T52 | 703 |
| HDC | HNMT | P50135 | 675 |
| HDC | SLITRK2 | Q9H156 | 668 |
| HDC | TBCD | Q9BTW9 | 652 |
| HDC | AOC1 | P19801 | 649 |
| HDC | NPTX1 | Q15818 | 648 |
| HDC | SLC18A2 | Q05940 | 609 |
| HDC | HCRT | O43612 | 600 |
| HDC | ODC1 | P11926 | 574 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HDC | DTX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DTX2 | HDC | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (3): DTX2 (Two-hybrid), HDC (Affinity Capture-MS), HDC (Biochemical Activity)
ESM2 similar proteins: A0AA51Z3J4, A0PA85, A6QM00, B0B804, B0BC69, I1RV23, O84439, P14748, P16453, P18088, P19113, P20228, P23738, P34897, P48318, P48319, P48320, P48321, P48861, P49357, P49358, P50432, P54769, P54770, Q04792, Q05329, Q05683, Q06087, Q0VCA1, Q10104, Q16S21, Q28D99, Q3KLR8, Q3SZ20, Q4PRC2, Q5EA83, Q5IS68, Q5R7S7, Q6ZQY3, Q758F0
Diamond homologs: A0A2H5AIY0, A0A2H5AIY2, A0A2I6B3P0, A0AA51Z3J4, O82415, O88533, O96567, O96569, O96571, P05031, P14173, P16453, P17770, P18486, P19113, P20711, P22781, P23738, P27718, P34751, P48861, P54768, P54769, P54770, P54771, P80041, P81893, P93082, P93083, Q05733, Q06085, Q06086, Q06087, Q06088, Q0ZQX0, Q0ZS27, Q16S21, Q5EA83, Q6ZJK7, Q7XHL3
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
97 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 1 |
| Uncertain significance | 70 |
| Likely benign | 10 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 14912 | NM_002112.4(HDC):c.951G>A (p.Trp317Ter) | Pathogenic |
| 4277990 | NM_002112.4(HDC):c.1140+1G>C | Pathogenic |
| 3067887 | NM_002112.4(HDC):c.32-2A>G | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
4373 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:50253651:C:A | G246W | 0.999 |
| 15:50254653:A:C | S151R | 0.999 |
| 15:50254653:A:T | S151R | 0.999 |
| 15:50254655:T:G | S151R | 0.999 |
| 15:50248321:C:G | R355P | 0.998 |
| 15:50248323:G:C | S354R | 0.998 |
| 15:50248323:G:T | S354R | 0.998 |
| 15:50248325:T:G | S354R | 0.998 |
| 15:50252467:A:G | L335P | 0.998 |
| 15:50252613:A:G | W317R | 0.998 |
| 15:50252613:A:T | W317R | 0.998 |
| 15:50254252:C:G | A200P | 0.998 |
| 15:50257539:G:C | S109R | 0.998 |
| 15:50257539:G:T | S109R | 0.998 |
| 15:50257541:T:G | S109R | 0.998 |
| 15:50243210:A:T | V392D | 0.997 |
| 15:50248285:C:G | R367P | 0.997 |
| 15:50248298:A:G | W363R | 0.997 |
| 15:50248298:A:T | W363R | 0.997 |
| 15:50252623:A:C | C313W | 0.997 |
| 15:50252669:G:A | S298F | 0.997 |
| 15:50252670:A:G | S298P | 0.997 |
| 15:50253650:C:A | G246V | 0.997 |
| 15:50253650:C:T | G246E | 0.997 |
| 15:50254620:C:A | R162S | 0.997 |
| 15:50254620:C:G | R162S | 0.997 |
| 15:50257522:A:G | L115P | 0.997 |
| 15:50258406:A:G | W106R | 0.997 |
| 15:50258406:A:T | W106R | 0.997 |
| 15:50258447:C:T | G92E | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000105151 (15:50246688 T>C), RS1000141474 (15:50246397 A>G), RS1000704339 (15:50248013 C>A,G,T), RS1000901051 (15:50254831 A>G), RS1000985258 (15:50266624 C>A), RS1001016637 (15:50266326 G>A,C,T), RS1001094803 (15:50241584 G>A,T), RS1001095615 (15:50259783 A>T), RS1001113772 (15:50260776 C>T), RS1001596044 (15:50255044 A>C), RS1001686184 (15:50249028 C>A), RS1001756955 (15:50255860 A>C), RS1001834310 (15:50243057 T>A,C), RS1001960685 (15:50256356 T>C), RS1002164063 (15:50249700 C>T)
Disease associations
OMIM: gene MIM:142704 | disease phenotypes: MIM:137580
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Tourette syndrome | Limited | Autosomal dominant |
Mondo (1): Tourette syndrome (MONDO:0007661)
Orphanet (1): NON RARE IN EUROPE: Tourette syndrome (Orphanet:856)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006482_14 | Lung function (FEV1/FVC) | 3.000000e-09 |
| GCST90002379_67 | Basophil count | 5.000000e-13 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004713 | FEV/FVC ratio |
| EFO:0005090 | basophil count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005879 | Tourette Syndrome | C10.228.140.079.898; C10.228.662.825.800; C10.574.500.850; C16.320.400.820; F03.625.992.850 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523192 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Decarboxylases
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Nickel | increases expression | 3 |
| Calcimycin | affects cotreatment, decreases reaction, increases activity, increases expression | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Quercetin | decreases expression | 2 |
| Tetradecanoylphorbol Acetate | affects cotreatment, decreases reaction, increases activity, increases expression | 2 |
| Tretinoin | decreases expression | 2 |
| Valproic Acid | decreases expression, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| novichok | affects binding | 1 |
| mipafox | affects binding | 1 |
| triphenyl phosphate | affects expression | 1 |
| tabun | affects binding | 1 |
| O,O-diethyl O-3,5,6-trichloro-2-pyridyl phosphate | affects binding | 1 |
| VX-agent | affects binding | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| alpha-fluoromethylhistidine | affects binding, decreases activity | 1 |
| atractylon | affects cotreatment, decreases reaction, increases activity, increases expression | 1 |
| phenylsaligenin cyclic phosphate | affects binding | 1 |
| histidine methyl ester | affects binding, decreases activity | 1 |
| phenyl di-n-pentylphosphinate | affects binding | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | affects binding, decreases reaction, increases expression | 1 |
| tebuconazole | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| S-(N,N-diethylaminoethyl) isobutyl methylphosphothiolate | affects binding | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nilotinib | decreases expression, affects binding, decreases reaction, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| pyeongwee-san extract | affects cotreatment, decreases reaction, increases activity, increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4477033 | Binding | Inhibition of recombinant human HDC (1 to 512 residues) expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in [14C]CO2 production from L-[U-14C]histidine at 10 uM relative to untreated control | Treatment of COPD, gastro-esophageal reflux disease (GERD), food allergies and other gastrointestinal conditions and disorders ameliorated by proper histamine management using a combination of histidine decarboxylase inhibitors, LRA drugs, anti-H1 and/or anti-H2 drugs |
Clinical trials (associated diseases)
183 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00152750 | PHASE4 | UNKNOWN | Study of Clonidine on Sleep Architecture in Children With Tourette’s Syndrome (TS) and Comorbid ADHD |
| NCT00226824 | PHASE4 | TERMINATED | Safety Study of Galantamine in Tic Disorders |
| NCT00241176 | PHASE4 | COMPLETED | Open Label Trial of Aripiprazole in Children and Adolescents With Tourette’s Disorder |
| NCT00370838 | PHASE4 | COMPLETED | Comparison of Keppra and Clonidine in the Treatment of Tics |
| NCT01018056 | PHASE4 | COMPLETED | Developing New Treatments for Tourette Syndrome: Therapeutic Trials With Modulators of Glutamatergic Neurotransmission |
| NCT01547000 | PHASE4 | COMPLETED | Guanfacine in Children With Tic Disorders |
| NCT03239210 | PHASE4 | COMPLETED | Effects of Ondansetron in Obsessive-compulsive and Tic Disorders |
| NCT00004376 | PHASE3 | COMPLETED | Phase III Randomized, Double-Blind, Placebo-Controlled Study of Guanfacine for Tourette Syndrome and Attention Deficit Hyperactivity Disorder |
| NCT00206323 | PHASE3 | COMPLETED | A Randomized, Placebo-controlled, Tourette Syndrome Study. |
| NCT00206336 | PHASE3 | COMPLETED | An Open-label Study to Determine the Efficacy and Safety of Topiramate in the Treatment of Tourette Syndrome. |
| NCT00478842 | PHASE3 | COMPLETED | Pallidal Stimulation and Gilles de la Tourette Syndrome |
| NCT00681863 | PHASE3 | TERMINATED | Open-label Extension Study of Pramipexole in the Treatment of Children and Adolescents With Tourette Syndrome |
| NCT01501695 | PHASE3 | COMPLETED | Phase III Study of 5LGr to Treat Tic Disorder |
| NCT03087201 | PHASE3 | COMPLETED | CANNAbinoids in the Treatment of TICS (CANNA-TICS) |
| NCT03487783 | PHASE3 | COMPLETED | Aripiprazole Oral Solution in the Treatment of Children and Adolescents With Tourette’s Syndrome |
| NCT03567291 | PHASE3 | TERMINATED | Evaluation of Safety and Tolerability of Long-term TEV-50717 (Deutetrabenazine) for Treatment of Tourette Syndrome in Children and Adolescents |
| NCT03571256 | PHASE3 | COMPLETED | A Study to Test if TEV-50717 is Effective in Relieving Tics Associated With Tourette Syndrome (TS) |
| NCT06021522 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate Long-term Safety of Ecopipam Tablets in Children, Adolescents and Adults With Tourette’s Disorder |
| NCT00004393 | PHASE2 | COMPLETED | Phase II Double Blind Placebo Controlled Trial of Risperidone in Tourette Syndrome |
| NCT00004652 | PHASE2 | COMPLETED | Phase II Pilot Controlled Study of Short Vs Longer Term Pimozide (Orap) Therapy in Tourette Syndrome |
| NCT00231985 | PHASE2 | COMPLETED | Effectiveness of Behavior Therapy and Psychosocial Therapy for the Treatment of Tourette Syndrome and Chronic Tic Disorder |
| NCT00311909 | PHASE2 | COMPLETED | Thalamic Deep Brain Stimulation for Tourette Syndrome |
| NCT00529308 | PHASE2 | COMPLETED | Transcranial Magnetic Stimulation (TMS) for Individuals With Tourette’s Syndrome |
| NCT00558467 | PHASE2 | COMPLETED | Pramipexole Pilot Phase II Study in Children and Adolescents With Tourette Disorder According to DSM-IV Criteria |
| NCT01043549 | PHASE2 | TERMINATED | Repetitive Transcranial Magnetic Stimulation of the Posterior Parietal Cortex in Patients Suffering From Gilles de la Tourette Syndrome |
| NCT01133353 | PHASE2 | WITHDRAWN | A Study of the Effectiveness and Safety of Tetrabenazine MR in Pediatric Subjects With Tourette’s Syndrome |
| NCT01475383 | PHASE2 | WITHDRAWN | Study Evaluating The Safety And Efficacy Of PF-03654746 In Adult Subjects With Tourette’s Syndrome |
| NCT01647269 | PHASE2 | COMPLETED | A Trial of Bilateral Deep Brain Stimulation to the Globus Pallidus Internum in Tourette Syndrome |
| NCT01904773 | PHASE2 | COMPLETED | Safety, Tolerability, Pharmacokinetic, and Efficacy Study of AZD5213 in Adolescents With Tourette’s Disorder |
| NCT02102698 | PHASE2 | COMPLETED | Ecopipam Treatment of Tourette’s Syndrome in Subjects 7-17 Years |
| NCT02217007 | PHASE2 | WITHDRAWN | A Trial Evaluating the Efficacy, Safety, and Pharmacokinetics of SNC-102 in Subjects With Tourette Syndrome |
| NCT02247206 | PHASE2 | COMPLETED | VoIP Delivered Behavior Therapy for Tourette Syndrome |
| NCT02581865 | PHASE2 | COMPLETED | Safety and Efficacy Study of NBI-98854 in Adults With Tourette Syndrome |
| NCT02619084 | PHASE2 | COMPLETED | Subthalamic Stimulation in Tourette’s Syndrome |
| NCT02679079 | PHASE2 | COMPLETED | Safety and Efficacy Study of NBI-98854 in Children and Adolescents With Tourette Syndrome |
| NCT02879578 | PHASE2 | COMPLETED | Safety and Tolerability Study of NBI-98854 for the Treatment of Subjects With Tourette Syndrome |
| NCT03066193 | PHASE2 | COMPLETED | Efficacy of a Therapeutic Combination of Dronabinol and PEA for Tourette Syndrome |
| NCT03247244 | PHASE2 | TERMINATED | Safety and Efficacy of Cannabis in Tourette Syndrome |
| NCT03325010 | PHASE2 | COMPLETED | Safety, Tolerability, and Efficacy of NBI-98854 for the Treatment of Pediatric Subjects With Tourette Syndrome |
| NCT03444038 | PHASE2 | COMPLETED | Open-Label Safety and Tolerability Study of NBI-98854 for the Treatment of Pediatric Subjects With Tourette Syndrome |
Related Atlas pages
- Associated diseases: Tourette syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Tourette syndrome