HFE
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Also known as HLA-HHFE1
Summary
HFE (homeostatic iron regulator, HGNC:4886) is a protein-coding gene on chromosome 6p22.2, encoding Hereditary hemochromatosis protein (Q30201). Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.
The protein encoded by this gene is a membrane protein that is similar to MHC class I-type proteins and associates with beta2-microglobulin (beta2M). It is thought that this protein functions to regulate iron absorption by regulating the interaction of the transferrin receptor with transferrin. The iron storage disorder, hereditary haemochromatosis, is a recessive genetic disorder that results from defects in this gene.
Source: NCBI Gene 3077 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hemochromatosis type 1 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 149
- Clinical variants (ClinVar): 335 total — 27 pathogenic, 12 likely-pathogenic
- Phenotypes (HPO): 86
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_000410
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4886 |
| Approved symbol | HFE |
| Name | homeostatic iron regulator |
| Location | 6p22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HLA-H, HFE1 |
| Ensembl gene | ENSG00000010704 |
| Ensembl biotype | protein_coding |
| OMIM | 613609 |
| Entrez | 3077 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 18 protein_coding, 4 nonsense_mediated_decay, 2 retained_intron
ENST00000309234, ENST00000317896, ENST00000336625, ENST00000349999, ENST00000352392, ENST00000353147, ENST00000357618, ENST00000397022, ENST00000461397, ENST00000470149, ENST00000483782, ENST00000485729, ENST00000486147, ENST00000488199, ENST00000714164, ENST00000714168, ENST00000714169, ENST00000714170, ENST00000714171, ENST00000714172, ENST00000714173, ENST00000714174, ENST00000714175, ENST00000714176
RefSeq mRNA: 13 — MANE Select: NM_000410
NM_000410, NM_001300749, NM_001384164, NM_001406751, NM_001406752, NM_139003, NM_139004, NM_139006, NM_139007, NM_139008, NM_139009, NM_139010, NM_139011
CCDS: CCDS4578, CCDS4579, CCDS4580, CCDS4581, CCDS4582, CCDS47386, CCDS47387, CCDS54974, CCDS54975, CCDS75412
Canonical transcript exons
ENST00000357618 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001641676 | 26091314 | 26091589 |
| ENSE00003535082 | 26093119 | 26093232 |
| ENSE00003637434 | 26090841 | 26091104 |
| ENSE00004023057 | 26094186 | 26098343 |
| ENSE00004023066 | 26087429 | 26087516 |
| ENSE00004023067 | 26092685 | 26092960 |
Expression profiles
Bgee: expression breadth ubiquitous, 238 present calls, max score 94.02.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.7972 / max 48.4918, expressed in 1171 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 66474 | 1.4626 | 867 |
| 66473 | 1.3346 | 872 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| type B pancreatic cell | CL:0000169 | 94.02 | gold quality |
| olfactory bulb | UBERON:0002264 | 93.87 | gold quality |
| stromal cell of endometrium | CL:0002255 | 86.59 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 83.68 | gold quality |
| monocyte | CL:0000576 | 83.44 | gold quality |
| mononuclear cell | CL:0000842 | 83.12 | gold quality |
| leukocyte | CL:0000738 | 82.79 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 81.66 | gold quality |
| right adrenal gland | UBERON:0001233 | 81.42 | gold quality |
| triceps brachii | UBERON:0001509 | 81.38 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 81.32 | gold quality |
| cervix epithelium | UBERON:0004801 | 81.30 | silver quality |
| seminal vesicle | UBERON:0000998 | 81.02 | gold quality |
| gluteal muscle | UBERON:0002000 | 81.00 | silver quality |
| left adrenal gland | UBERON:0001234 | 80.83 | gold quality |
| diaphragm | UBERON:0001103 | 80.80 | gold quality |
| vena cava | UBERON:0004087 | 80.72 | gold quality |
| calcaneal tendon | UBERON:0003701 | 80.50 | gold quality |
| gall bladder | UBERON:0002110 | 80.37 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 80.30 | gold quality |
| adrenal cortex | UBERON:0001235 | 80.22 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 80.15 | silver quality |
| adrenal gland | UBERON:0002369 | 80.07 | gold quality |
| liver | UBERON:0002107 | 79.57 | gold quality |
| pancreatic ductal cell | CL:0002079 | 79.45 | silver quality |
| colonic epithelium | UBERON:0000397 | 79.40 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 79.22 | gold quality |
| rectum | UBERON:0001052 | 79.10 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 79.00 | gold quality |
| corpus epididymis | UBERON:0004359 | 78.64 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-75367 | yes | 187.65 |
| E-ANND-3 | no | 4.82 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| BMPR1A | Activation |
Upstream regulators (CollecTRI, top): E2F1, KLF5, NKX2-5, PARP1
miRNA regulators (miRDB)
52 targeting HFE, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-6857-5P | 99.87 | 65.32 | 985 |
| HSA-MIR-373-3P | 99.84 | 70.68 | 1668 |
| HSA-MIR-520E-3P | 99.84 | 70.55 | 1698 |
| HSA-MIR-372-3P | 99.83 | 70.58 | 1691 |
| HSA-MIR-520A-3P | 99.83 | 70.59 | 1687 |
| HSA-MIR-520B-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520C-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520D-3P | 99.83 | 70.78 | 1676 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-12124 | 99.68 | 69.17 | 2700 |
| HSA-MIR-5093 | 99.67 | 69.26 | 2291 |
| HSA-MIR-5700 | 99.64 | 69.88 | 2280 |
| HSA-MIR-4666B | 99.64 | 68.69 | 1282 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-7159-3P | 99.51 | 70.17 | 1920 |
| HSA-MIR-3915 | 99.45 | 68.49 | 1905 |
| HSA-MIR-6128 | 99.33 | 67.83 | 1581 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- 871 healthy unrelated subjects in Poland were collected to assess the relevant frequencies. Each subject was genotyped for the C282Y and H63D mutations using a PCR-based protocol (PMID:11386022)
- The Ala176Val mutation may have a possible role on the cause of hemochromatosis in a Japanese case (PMID:11446670)
- mutational analysis of the transferrin receptor reveals overlapping HFE and transferrin binding sites (PMID:11800564)
- genotype and allele frequencies between neonates and referred patients for HFE molecular analysis (PMID:11809727)
- Association between MHC class I gene HFE polymorphisms and longevity (PMID:11857056)
- HFE gene implicated in this disorder has been identified on chromosome 6. the most prevalent mutation is a point mutation(histidine to aspartic acid)in iron overload has been controversial. (PMID:11869934)
- A previously undescribed nonsense mutation of the HFE gene (PMID:11903354)
- Distribution of HFE C282Y and H63D mutations in the Balearic Islands (NE Spain). (PMID:11903355)
- results suggest that wild-type HFE negatively modulates the endocytic uptake of transferrin (PMID:11940510)
- Frequency of the S65C mutation of HFE and iron overload in subjects heterozygous for C282Y. (PMID:11943417)
- REVIEW:Characteristics of the C282Y mutation in childhood ALL, in contrast to other cancers, is male-specific, lacks a gene-dosage effect, and exhibits associations suggesting the involvement of another HLA-linked gene in leukemia susceptibility. (PMID:12002748)
- Long term survival is excellent in C282Y homozygotes for the C282Y mutation of the hemochromatosis gene diagnosed and treated before the development of cirrhosis and diabetes (PMID:12045778)
- Individuals with mutations in the HFE gene show very few hemochromatosis-related symptoms. (PMID:12059121)
- The tighter association of the -467 polymorphism with the C282Y mutation is consistent with other data that suggest that the C282Y mutation has occurred relatively recently and that the H63D mutation is considerably older. (PMID:12064915)
- HFE mutations do not confer an additional risk of hepatic fibrosis in patients with nonalcoholic steatohepatitis (PMID:12085358)
- possession of the HFE gene 282Tyr allele may offer some protection against the development of Parkinson Disease. (PMID:12098643)
- polymorphism and its relation to type 2 diabetes mellitus in the Czech population (PMID:12148086)
- When combined with the C282Y mutation, the S65C mutation is associated with an increased risk of hemochromatosis. (PMID:12180078)
- HFE has two mutually exclusive functions, binding to TfR1 in competition with Tf, or inhibition of iron release from macrophages. (PMID:12429850)
- HFE mutations more common in patients than controls, and advanced degrees of fibrosis developed at younger ages with C282Y mutation. Patients with C282Y had higher mean hepatic iron concentrations, hepatic iron indices, and hepatic fibrosis scores. (PMID:12445428)
- These results suggest that the apparent iron-deficient phenotype elicited by haemochromatosis protein (HFE) is not linked to beta(2)microglobulin insufficiency. (PMID:12464008)
- an increased risk of osteoarthritis among individuals who are heterozygous for the C282Y HFE mutation. (PMID:12508400)
- Genotyping of the C282Y and H63D substitutions in the HFE gene provides a satisfactory marker since these genotypes are associated with ~90% of herditary hemochromatosis. (PMID:12512743)
- Subjects with any HFE gene mutation were more likely to have colon cancer than subjects with no HFE gene mutations. (PMID:12529348)
- The presence of HFE mutations is independently associated with iron loading and advanced fibrosis in patients with compensated liver disease from chronic hepatitis C, especially after controlling for duration of disease. (PMID:12557137)
- C282Y or H63D heterozygosity is an independent risk factor for liver fibrosis and cirrhosis in HCV infected individuals. Screening for HFE mutations should be considered in HCV infection. (PMID:12586300)
- Results suggest that the H63D mutation in the hereditary hemochromatosis HFE gene may play a role in the pathogenesis of late onset type 2 diabetes. (PMID:12601293)
- In patients with rheumatoid arthritis, 2/24 (8.34%) were found to be positive for the C282Y mutation in the case of heterozygosis compared with 3/24 (12.5%) of patients with spondylarthritis. (PMID:12635863)
- The presence of TfR2 and absence of TfR1 suggests that HFE may serve a different function in platelets compared with the other HFE-positive cell types. (PMID:12656741)
- Interacts with transferrin receptors in endosomes (PMID:12667138)
- HFE C282Y and H63D are determinants of iron parameters in the elderly and will be effective in detecting individuals at high risk of hemochromatosis. (PMID:12673276)
- HFE and APOE genotypes are different between Alzheimer’s disease patients, high cognitive impairment and low cognitive impairment (PMID:12707938)
- this study does not support the suggestion that H63D mutations may anticipate sporadic AD clinical presentation in susceptible individuals. (PMID:12714262)
- trend for an increased frequency of H63D allele in centenarian women (PMID:12714263)
- In a population of 1279 Caucasians with angiographically confirmed coronary status, there is no evidence of an association between the C282Y mutation in the haemochromatosis gene and prevalence of coronary artery disease and myocardial infarction (PMID:12746412)
- The mild iron overload associated with heterozygosity for C282Y HFE mutation confers susceptibility to nonalcoholic fatty liver disease (PMID:12779071)
- We see no evidence for over-representation of iron loading HFE alleles in type 2 diabetes mellitus (PMID:12783844)
- study performed in two samples of genetically homogeneous patients and controls does not support the suggestion that HFE mutations may be associated with acute myocardial infarction in susceptible individuals (PMID:12850485)
- HFE can lower intracellular iron levels independently of its interaction with the transferrin receptor (PMID:12874382)
- HFE mutations C282Y and H63D carrier rate in an Irish population of cystic fibrosis allele carriers (PMID:12885340)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Hfe | ENSMUSG00000006611 |
| rattus_norvegicus | Hfe | ENSRNOG00000016967 |
Paralogs (22): FCGRT (ENSG00000104870), ULBP1 (ENSG00000111981), ULBP2 (ENSG00000131015), ULBP3 (ENSG00000131019), MR1 (ENSG00000153029), RAET1L (ENSG00000155918), CD1D (ENSG00000158473), CD1A (ENSG00000158477), CD1C (ENSG00000158481), CD1B (ENSG00000158485), CD1E (ENSG00000158488), AZGP1 (ENSG00000160862), RAET1E (ENSG00000164520), RAET1G (ENSG00000203722), MICB (ENSG00000204516), MICA (ENSG00000204520), HLA-C (ENSG00000204525), HLA-E (ENSG00000204592), HLA-G (ENSG00000204632), HLA-F (ENSG00000204642), HLA-A (ENSG00000206503), HLA-B (ENSG00000234745)
Protein
Protein identifiers
Hereditary hemochromatosis protein — Q30201 (reviewed: Q30201)
Alternative names: HLA-H
All UniProt accessions (13): Q30201, A0AAQ5BHI2, A0AAQ5BHJ0, A0AAQ5BHK7, A0AAQ5BHL2, A0AAQ5BHM0, A0AAQ5BHM2, A0AAQ5BHM4, A0AAQ5BHP7, A0AAQ5BHP9, F8W7W8, H7C4K4, Q6B0J5
UniProt curated annotations — full annotation on UniProt →
Function. Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.
Subunit / interactions. Binds TFR through the extracellular domain in a pH-dependent manner.
Subcellular location. Cell membrane.
Tissue specificity. Expressed in all tissues tested except brain.
Disease relevance. Hemochromatosis 1 (HFE1) [MIM:235200] A disorder of iron metabolism characterized by iron overload. Excess iron is deposited in a variety of organs leading to their failure, and resulting in serious illnesses including cirrhosis, hepatomas, diabetes, cardiomyopathy, arthritis, and hypogonadotropic hypogonadism. Severe effects of the disease usually do not appear until after decades of progressive iron loading. The disease is caused by variants affecting the gene represented in this entry.
Polymorphism. Genetic variations in HFE may influence the transferrin serum levels. Iron is essential for biochemical functions such as oxygen transport and oxidative phosphorylation. Excessive iron can cause iron-overload-related liver diseases, whereas iron deficiency can lead to anemia. Iron status can be assessed by measuring the levels of serum iron, serum transferrin, transferrin saturation with iron, and serum ferritin.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the MHC class I family.
Isoforms (11)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q30201-1 | 1 | yes |
| Q30201-2 | 2, delE2 | |
| Q30201-3 | 3, del14E4 | |
| Q30201-4 | 4, delE214E4 | |
| Q30201-5 | 5 | |
| Q30201-6 | 6 | |
| Q30201-7 | 7, delE3 | |
| Q30201-8 | 8, 1043-2283del,intron6ins | |
| Q30201-9 | 9, delE3-7 | |
| Q30201-10 | 10, 562-878del | |
| Q30201-11 | 11 |
RefSeq proteins (13): NP_000401, NP_001287678, NP_001371093, NP_001393680, NP_001393681, NP_620572, NP_620573, NP_620575, NP_620576, NP_620577, NP_620578, NP_620579, NP_620580 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001039 | MHC_I_a_a1/a2 | Domain |
| IPR003006 | Ig/MHC_CS | Conserved_site |
| IPR003597 | Ig_C1-set | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR011161 | MHC_I-like_Ag-recog | Domain |
| IPR011162 | MHC_I/II-like_Ag-recog | Homologous_superfamily |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR037055 | MHC_I-like_Ag-recog_sf | Homologous_superfamily |
| IPR050208 | MHC_class-I_related | Family |
Pfam: PF00129, PF07654
UniProt features (83 total): sequence variant 19, strand 18, splice variant 13, helix 9, sequence conflict 6, region of interest 4, glycosylation site 3, turn 3, disulfide bond 2, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, domain 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1A6Z | X-RAY DIFFRACTION | 2.6 |
| 1DE4 | X-RAY DIFFRACTION | 2.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q30201-F1 | 88.62 | 0.72 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (2): 124–187, 225–282
Glycosylation sites (3): 110, 130, 234
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-917977 | Transferrin endocytosis and recycling |
MSigDB gene sets: 98 (showing top):
GOBP_POSITIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOCC_VACUOLAR_MEMBRANE, GOCC_SECRETORY_GRANULE, GOBP_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOCC_CELL_SURFACE, GOBP_LEUKOCYTE_MEDIATED_CYTOTOXICITY, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_VIA_MHC_CLASS_IB, GAURNIER_PSMD4_TARGETS, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_ANTIGEN, GOBP_LEUKOCYTE_MEDIATED_IMMUNITY, GOBP_POSITIVE_REGULATION_OF_T_CELL_MEDIATED_CYTOTOXICITY, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_LYMPHOCYTE_MEDIATED_IMMUNITY, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION
GO Biological Process (28): negative regulation of T cell cytokine production (GO:0002725), intracellular iron ion homeostasis (GO:0006879), receptor-mediated endocytosis (GO:0006898), cell surface receptor signaling pathway (GO:0007166), response to iron ion (GO:0010039), gene expression (GO:0010467), positive regulation of gene expression (GO:0010628), BMP signaling pathway (GO:0030509), negative regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032435), transferrin transport (GO:0033572), regulation of iron ion transport (GO:0034756), hormone biosynthetic process (GO:0042446), urate metabolic process (GO:0046415), positive regulation of receptor-mediated endocytosis (GO:0048260), positive regulation of SMAD protein signal transduction (GO:0060391), multicellular organismal-level iron ion homeostasis (GO:0060586), protein-containing complex assembly (GO:0065003), cellular response to iron ion (GO:0071281), positive regulation of peptide hormone secretion (GO:0090277), negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I (GO:1904283), response to iron ion starvation (GO:1990641), regulation of protein localization to cell surface (GO:2000008), negative regulation of ubiquitin-dependent protein catabolic process (GO:2000059), negative regulation of CD8-positive, alpha-beta T cell activation (GO:2001186), regulation of T cell mediated immunity (GO:0002709), monoatomic ion transport (GO:0006811), iron ion transport (GO:0006826), regulation of immune response (GO:0050776)
GO Molecular Function (6): signaling receptor binding (GO:0005102), beta-2-microglobulin binding (GO:0030881), co-receptor binding (GO:0039706), transporter activator activity (GO:0141109), transferrin receptor binding (GO:1990459), protein binding (GO:0005515)
GO Cellular Component (13): obsolete extracellular space (GO:0005615), nucleoplasm (GO:0005654), early endosome (GO:0005769), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cytoplasmic vesicle (GO:0031410), apical part of cell (GO:0045177), basal part of cell (GO:0045178), perinuclear region of cytoplasm (GO:0048471), recycling endosome (GO:0055037), HFE-transferrin receptor complex (GO:1990712), endomembrane system (GO:0012505), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Iron uptake and transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| protein binding | 3 |
| inorganic ion homeostasis | 2 |
| iron ion transport | 2 |
| endosome | 2 |
| plasma membrane | 2 |
| cytoplasm | 2 |
| T cell cytokine production | 1 |
| negative regulation of T cell mediated immunity | 1 |
| negative regulation of cytokine production involved in immune response | 1 |
| regulation of T cell cytokine production | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| endocytosis | 1 |
| signal transduction | 1 |
| response to metal ion | 1 |
| macromolecule biosynthetic process | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| cellular response to BMP stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| regulation of proteasomal ubiquitin-dependent protein catabolic process | 1 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 1 |
| negative regulation of proteasomal protein catabolic process | 1 |
| negative regulation of ubiquitin-dependent protein catabolic process | 1 |
| protein transport | 1 |
| regulation of metal ion transport | 1 |
| biosynthetic process | 1 |
| hormone metabolic process | 1 |
| small molecule metabolic process | 1 |
| purine-containing compound metabolic process | 1 |
| receptor-mediated endocytosis | 1 |
| positive regulation of endocytosis | 1 |
| regulation of receptor-mediated endocytosis | 1 |
| regulation of SMAD protein signal transduction | 1 |
| SMAD protein signal transduction | 1 |
| positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 1 |
| positive regulation of intracellular signal transduction | 1 |
| monoatomic cation homeostasis | 1 |
| multicellular organismal-level chemical homeostasis | 1 |
Protein interactions and networks
STRING
1398 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HFE | TFRC | P02786 | 999 |
| HFE | TFR2 | Q9UP52 | 999 |
| HFE | HJV | Q6ZVN8 | 995 |
| HFE | B2M | P01884 | 995 |
| HFE | HAMP | P81172 | 965 |
| HFE | TMPRSS6 | Q8IU80 | 933 |
| HFE | SLC40A1 | Q9NP59 | 921 |
| HFE | CYBRD1 | Q53TN4 | 908 |
| HFE | BMP6 | P22004 | 905 |
| HFE | SLC11A2 | P49281 | 896 |
| HFE | UROD | P06132 | 856 |
| HFE | FTL | P02792 | 759 |
| HFE | CP | P00450 | 727 |
| HFE | ALAS2 | P22557 | 693 |
| HFE | ALB | P02768 | 679 |
IntAct
49 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HFE | B2M | psi-mi:“MI:0915”(physical association) | 0.730 |
| B2M | HFE | psi-mi:“MI:0915”(physical association) | 0.730 |
| B3GNT3 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.670 |
| B2M | NEMP1 | psi-mi:“MI:0914”(association) | 0.640 |
| HFE | TFRC | psi-mi:“MI:0915”(physical association) | 0.620 |
| TFRC | HFE | psi-mi:“MI:0403”(colocalization) | 0.620 |
| CTSG | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| FUT1 | NDUFS4 | psi-mi:“MI:0914”(association) | 0.530 |
| HFE | ADAM10 | psi-mi:“MI:0914”(association) | 0.530 |
| SMPDL3B | HFE | psi-mi:“MI:0915”(physical association) | 0.400 |
| rep | BMPR1B | psi-mi:“MI:0914”(association) | 0.350 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| HFE | PODXL | psi-mi:“MI:0914”(association) | 0.350 |
| APOM | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM106A | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-C | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-DPB1 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| SFTPC | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| BRICD5 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-DRB3 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| P2RX2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| ASIC4 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| B3GALT4 | psi-mi:“MI:0914”(association) | 0.350 | |
| PTPRN | KCNK1 | psi-mi:“MI:0914”(association) | 0.350 |
| PRG2 | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| RLN1 | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| SDF2L1 | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (122): TFRC (Affinity Capture-Western), HFE (Affinity Capture-Western), HFE (Affinity Capture-MS), HFE (Affinity Capture-MS), HFE (Proximity Label-MS), ST6GALNAC4 (Affinity Capture-MS), ADAM22 (Affinity Capture-MS), TAF9B (Affinity Capture-MS), SUPT7L (Affinity Capture-MS), TMEM59L (Affinity Capture-MS), CCPG1 (Affinity Capture-MS), RAD21 (Affinity Capture-MS), NXPE3 (Affinity Capture-MS), PLXNA2 (Affinity Capture-MS), GALNT2 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2K7V7, C1ITJ8, O08602, O08603, O08604, O19477, O35799, P01901, P01902, P06339, P13599, P14427, P14432, P16391, P25311, P26151, P30383, P55899, P60018, P70387, Q01965, Q29980, Q29983, Q2KN22, Q30201, Q3B8P2, Q5RD09, Q60I18, Q61559, Q63678, Q64726, Q6H3X3, Q8HWB0, Q8HWE5, Q8HWE7, Q8SPV9, Q8VD31, Q920A9, Q95460, Q9BCU3
Diamond homologs: A0A0G2K7V7, O19477, O35799, P01896, P01899, P01900, P01901, P10321, P13752, P15979, P16391, P30377, P30379, P30380, P30381, P30386, P30388, P30511, P30516, P60018, P70387, Q29980, Q29983, Q30201, Q60I18, Q8HWE5, Q8HWE7, Q9GKZ0, Q9GL41, Q9GL42, Q9GL43, C1ITJ8, P01888, P01889, P01893, P01894, P01895, P01897, P01898, P01902
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 52 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Metabolism of carbohydrates and carbohydrate derivatives | 6 | 19.5× | 1e-04 |
| Neutrophil degranulation | 9 | 5.6× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
335 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 27 |
| Likely pathogenic | 12 |
| Uncertain significance | 121 |
| Likely benign | 135 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1071037 | NM_000410.4(HFE):c.1022_1034del (p.His341fs) | Pathogenic |
| 1072713 | NM_000410.4(HFE):c.480del (p.Arg161fs) | Pathogenic |
| 1454985 | NM_000410.4(HFE):c.279del (p.Trp94fs) | Pathogenic |
| 1456030 | NM_000410.4(HFE):c.626del (p.Leu209fs) | Pathogenic |
| 1458886 | NM_000410.4(HFE):c.414C>G (p.Tyr138Ter) | Pathogenic |
| 18 | NM_000410.4(HFE):c.989G>T (p.Arg330Met) | Pathogenic |
| 2016731 | NM_000410.4(HFE):c.407G>A (p.Trp136Ter) | Pathogenic |
| 2054741 | NM_000410.4(HFE):c.616+1G>T | Pathogenic |
| 2126877 | NM_000410.4(HFE):c.760A>T (p.Lys254Ter) | Pathogenic |
| 2199175 | NM_000410.4(HFE):c.832C>T (p.Gln278Ter) | Pathogenic |
| 2710835 | NM_000410.4(HFE):c.663del (p.Thr222fs) | Pathogenic |
| 2751130 | NM_000410.4(HFE):c.840T>A (p.Tyr280Ter) | Pathogenic |
| 2770771 | NM_000410.4(HFE):c.720_726dup (p.Lys243delinsGluGlyTer) | Pathogenic |
| 2803829 | NM_000410.4(HFE):c.546C>A (p.Tyr182Ter) | Pathogenic |
| 2837089 | NM_000410.4(HFE):c.712A>T (p.Lys238Ter) | Pathogenic |
| 2962260 | NM_000410.4(HFE):c.610C>T (p.Gln204Ter) | Pathogenic |
| 3017513 | NM_000410.4(HFE):c.568C>T (p.Gln190Ter) | Pathogenic |
| 3245973 | NC_000006.11:g.(?26087669)(26094454_?)del | Pathogenic |
| 3245974 | NC_000006.11:g.(?26087669)(26091837_?)del | Pathogenic |
| 3384778 | NM_000410.4(HFE):c.166C>T (p.Gln56Ter) | Pathogenic |
| 3613304 | NM_000410.4(HFE):c.899C>A (p.Ser300Ter) | Pathogenic |
| 3664385 | NM_000410.4(HFE):c.774del (p.Asn259fs) | Pathogenic |
| 3671897 | NM_000410.4(HFE):c.440_446del (p.Glu147fs) | Pathogenic |
| 3689840 | NM_000410.4(HFE):c.693C>G (p.Tyr231Ter) | Pathogenic |
| 4732018 | NM_000410.4(HFE):c.1006+1G>T | Pathogenic |
| 530393 | NM_000410.4(HFE):c.762del (p.Asp255fs) | Pathogenic |
| 88946 | NM_000410.4(HFE):c.502G>T (p.Glu168Ter) | Pathogenic |
| 1185560 | NM_000410.4(HFE):c.262A>T (p.Ser88Cys) | Likely pathogenic |
| 1217279 | NM_000410.4(HFE):c.688TAC[1] (p.Tyr231del) | Likely pathogenic |
| 1677541 | NM_000410.4(HFE):c.340+1G>C | Likely pathogenic |
SpliceAI
1291 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:26087515:GC:G | donor_gain | 1.0000 |
| 6:26087517:G:GG | donor_gain | 1.0000 |
| 6:26092682:AAGT:A | acceptor_gain | 1.0000 |
| 6:26092683:A:G | acceptor_gain | 1.0000 |
| 6:26092684:G:GG | acceptor_gain | 1.0000 |
| 6:26092792:GA:G | donor_gain | 1.0000 |
| 6:26092815:G:GT | donor_gain | 1.0000 |
| 6:26092816:G:GT | donor_gain | 1.0000 |
| 6:26092831:G:GT | donor_gain | 1.0000 |
| 6:26092831:GAC:G | donor_gain | 1.0000 |
| 6:26093117:A:AG | acceptor_gain | 1.0000 |
| 6:26093118:G:GG | acceptor_gain | 1.0000 |
| 6:26093216:G:GT | donor_gain | 1.0000 |
| 6:26093233:G:GG | donor_gain | 1.0000 |
| 6:26094281:G:GT | donor_gain | 1.0000 |
| 6:26087512:GCTGC:G | donor_gain | 0.9900 |
| 6:26091023:C:G | donor_gain | 0.9900 |
| 6:26092678:T:A | acceptor_gain | 0.9900 |
| 6:26092682:A:AG | acceptor_gain | 0.9900 |
| 6:26092684:GT:G | acceptor_gain | 0.9900 |
| 6:26092815:GGA:G | donor_gain | 0.9900 |
| 6:26092834:G:GG | donor_gain | 0.9900 |
| 6:26093118:GA:G | acceptor_gain | 0.9900 |
| 6:26093118:GAGCC:G | acceptor_gain | 0.9900 |
| 6:26093228:TTC:T | donor_gain | 0.9900 |
| 6:26087514:TGC:T | donor_gain | 0.9800 |
| 6:26087515:GCG:G | donor_gain | 0.9800 |
| 6:26092684:GTGC:G | acceptor_gain | 0.9800 |
| 6:26092793:A:G | donor_gain | 0.9800 |
| 6:26092818:G:GG | donor_gain | 0.9800 |
AlphaMissense
2276 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:26091438:G:C | W155C | 0.993 |
| 6:26091438:G:T | W155C | 0.993 |
| 6:26091480:G:C | W169C | 0.990 |
| 6:26091480:G:T | W169C | 0.990 |
| 6:26092783:T:A | W239R | 0.990 |
| 6:26092783:T:C | W239R | 0.990 |
| 6:26091056:T:C | F98L | 0.989 |
| 6:26091058:C:A | F98L | 0.989 |
| 6:26091058:C:G | F98L | 0.989 |
| 6:26092785:G:C | W239C | 0.989 |
| 6:26092785:G:T | W239C | 0.989 |
| 6:26091416:T:C | F148S | 0.988 |
| 6:26091436:T:A | W155R | 0.988 |
| 6:26091436:T:C | W155R | 0.988 |
| 6:26092741:T:A | C225S | 0.988 |
| 6:26092742:G:C | C225S | 0.988 |
| 6:26091343:T:A | C124S | 0.986 |
| 6:26091344:G:C | C124S | 0.986 |
| 6:26090903:T:C | F47L | 0.984 |
| 6:26090905:T:A | F47L | 0.984 |
| 6:26090905:T:G | F47L | 0.984 |
| 6:26091046:G:C | W94C | 0.983 |
| 6:26091046:G:T | W94C | 0.983 |
| 6:26092912:T:A | C282S | 0.982 |
| 6:26092913:G:C | C282S | 0.982 |
| 6:26091326:T:C | L118P | 0.981 |
| 6:26091415:T:C | F148L | 0.980 |
| 6:26091417:C:A | F148L | 0.980 |
| 6:26091417:C:G | F148L | 0.980 |
| 6:26091044:T:A | W94R | 0.979 |
dbSNP variants (sampled 300 via entrez): RS1000470656 (6:26095908 C>T), RS1000696519 (6:26089053 C>T), RS1000738662 (6:26095384 A>G), RS1001345852 (6:26097186 T>C), RS1001361619 (6:26086159 T>A), RS1001459567 (6:26088911 T>C), RS1001572476 (6:26089346 G>A), RS1002070106 (6:26096336 G>A), RS1002168538 (6:26092049 C>G), RS1003128351 (6:26090803 C>T), RS1003170474 (6:26093536 A>G), RS1003455301 (6:26093076 G>A), RS1003492652 (6:26086590 T>A,C), RS1003502151 (6:26097956 A>G), RS1003847309 (6:26097872 ACT>A)
Disease associations
OMIM: gene MIM:613609 | disease phenotypes: MIM:235200, MIM:176100, MIM:176200, MIM:219700, MIM:612635, MIM:104300
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hemochromatosis type 1 | Definitive | Autosomal recessive |
| cystic fibrosis | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hemochromatosis type 1 | Definitive | AR |
Mondo (16): Alzheimer disease (MONDO:0004975), cardiomyopathy (MONDO:0004994), hereditary hemochromatosis (MONDO:0006507), familial porphyria cutanea tarda (MONDO:0008296), variegate porphyria (MONDO:0008297), cystic fibrosis (MONDO:0009061), microvascular complications of diabetes, susceptibility to, 7 (MONDO:0012971), neuroendocrine neoplasm (MONDO:0019496), hemochromatosis type 1 (MONDO:0021001), Alzheimer disease type 1 (MONDO:0007088), hemochromatosis type 2 (MONDO:0019257), congenital nervous system disorder (MONDO:0002320), peripheral nervous system disorder (MONDO:0003620), peripheral neuropathy (MONDO:0005244), skin sensitivity to sun (MONDO:0005434)
Orphanet (13): Porphyria cutanea tarda (Orphanet:101330), Early-onset autosomal dominant Alzheimer disease (Orphanet:1020), Rare cardiomyopathy (Orphanet:167848), Rare hereditary hemochromatosis (Orphanet:220489), Familial porphyria cutanea tarda (Orphanet:443062), Symptomatic form of HFE-related hemochromatosis (Orphanet:465508), Cystic fibrosis (Orphanet:586), Variegate porphyria (Orphanet:79473), Neuroendocrine neoplasm (Orphanet:877), HJV or HAMP-related hemochromatosis (Orphanet:79230), Inherited cancer-predisposing syndrome (Orphanet:140162), NON RARE IN EUROPE: Alzheimer disease (Orphanet:238616), NON RARE IN EUROPE: Hemochromatosis type 1 (Orphanet:139498)
HPO phenotypes
86 total (30 of 86 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000027 | Azoospermia |
| HP:0000029 | Testicular atrophy |
| HP:0000044 | Hypogonadotropic hypogonadism |
| HP:0000141 | Amenorrhea |
| HP:0000246 | Sinusitis |
| HP:0000365 | Hearing impairment |
| HP:0000716 | Depression |
| HP:0000739 | Anxiety |
| HP:0000741 | Apathy |
| HP:0000771 | Gynecomastia |
| HP:0000787 | Nephrolithiasis |
| HP:0000789 | Infertility |
| HP:0000802 | Impotence |
| HP:0000819 | Diabetes mellitus |
| HP:0000821 | Hypothyroidism |
| HP:0000938 | Osteopenia |
| HP:0000939 | Osteoporosis |
| HP:0000953 | Hyperpigmentation of the skin |
| HP:0001009 | Telangiectasia |
| HP:0001254 | Lethargy |
| HP:0001324 | Muscle weakness |
| HP:0001369 | Arthritis |
| HP:0001386 | Joint swelling |
| HP:0001387 | Joint stiffness |
| HP:0001392 | Abnormality of the liver |
| HP:0001394 | Cirrhosis |
| HP:0001402 | Hepatocellular carcinoma |
| HP:0001409 | Portal hypertension |
| HP:0001508 | Failure to thrive |
GWAS associations
149 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000301_22 | Iron status biomarkers | 4.000000e-11 |
| GCST000301_3 | Iron status biomarkers | 1.000000e-10 |
| GCST000301_7 | Iron status biomarkers | 4.000000e-15 |
| GCST000498_3 | Hematological parameters | 1.000000e-23 |
| GCST000499_2 | Hemoglobin | 6.000000e-19 |
| GCST000501_1 | Hemoglobin | 1.000000e-08 |
| GCST000502_8 | Hematocrit | 2.000000e-09 |
| GCST000503_1 | Mean corpuscular volume | 1.000000e-46 |
| GCST000505_1 | Iron status biomarkers | 5.000000e-07 |
| GCST000505_4 | Iron status biomarkers | 2.000000e-08 |
| GCST000585_16 | Mean corpuscular volume | 2.000000e-06 |
| GCST000759_6 | LDL cholesterol | 6.000000e-10 |
| GCST000760_30 | Cholesterol, total | 2.000000e-08 |
| GCST000803_9 | Glycated hemoglobin levels | 3.000000e-20 |
| GCST000814_2 | Red blood cell traits | 6.000000e-07 |
| GCST000814_3 | Red blood cell traits | 3.000000e-09 |
| GCST000913_3 | Iron status biomarkers | 9.000000e-09 |
| GCST000913_5 | Iron status biomarkers | 9.000000e-10 |
| GCST000935_5 | Iron status biomarkers | 3.000000e-09 |
| GCST001021_5 | Iron status biomarkers | 3.000000e-08 |
| GCST001021_6 | Iron status biomarkers | 6.000000e-10 |
| GCST001103_5 | Alcohol consumption (transferrin glycosylation) | 2.000000e-32 |
| GCST001174_2 | Hepcidin levels | 4.000000e-09 |
| GCST001174_3 | Hepcidin levels | 5.000000e-11 |
| GCST001174_4 | Hepcidin levels | 3.000000e-07 |
| GCST001174_6 | Hepcidin levels | 3.000000e-15 |
| GCST001227_3 | Systolic blood pressure | 8.000000e-12 |
| GCST001228_11 | Diastolic blood pressure | 2.000000e-15 |
| GCST001236_4 | Blood pressure | 2.000000e-12 |
| GCST001238_7 | Hypertension | 2.000000e-10 |
EFO canonical traits (36, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004461 | iron biomarker measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004348 | hematocrit |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004574 | total cholesterol measurement |
| EFO:0004541 | HbA1c measurement |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0004460 | soluble transferrin receptor measurement |
| EFO:0004459 | ferritin measurement |
| EFO:0006334 | total iron binding capacity |
| EFO:0004329 | alcohol drinking |
| EFO:0006335 | systolic blood pressure |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006340 | mean arterial pressure |
| EFO:0006341 | transferrin measurement |
| EFO:0006333 | transferrin saturation measurement |
| EFO:0007901 | hepcidin:ferritin ratio |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0004305 | erythrocyte count |
| EFO:0004309 | platelet count |
| EFO:0007986 | reticulocyte count |
| EFO:0004337 | intelligence |
| EFO:0006527 | smoking status measurement |
| EFO:0009188 | Red cell distribution width |
| EFO:0009595 | guilt measurement |
| EFO:0009589 | worry measurement |
| EFO:0009931 | Agents acting on the renin-angiotensin system use measurement |
| EFO:0008111 | diet measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
MeSH disease descriptors (10)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000544 | Alzheimer Disease | C10.228.140.380.100; C10.574.945.249; F03.615.400.100 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D003550 | Cystic Fibrosis | C06.689.202; C08.381.187; C16.320.190; C16.614.213 |
| D006432 | Hemochromatosis | C16.320.565.618.337; C18.452.565.500.480; C18.452.648.618.337 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D018358 | Neuroendocrine Tumors | C04.557.465.625.650; C04.557.580.625.650 |
| D010523 | Peripheral Nervous System Diseases | C10.668.829 |
| D046350 | Porphyria, Variegate | C06.552.830.625; C16.320.850.742.625; C17.800.827.742.625; C18.452.811.400.625 |
| C536594 | Alzheimer disease type 1 (supp.) | |
| C537247 | Hemochromatosis, type 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs2071303 | Efficacy | 3 | adalimumab | Crohn Disease |
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1799945 | HFE | 0.00 | 0 | ||
| rs1800562 | HFE | 0.00 | 0 | ||
| rs2071303 | HFE | 3 | 2.75 | 1 | adalimumab |
| rs2858996 | HFE | 0.00 | 0 |
CTD chemical–gene interactions
48 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Iron | affects abundance, decreases uptake, decreases reaction, increases reaction, increases abundance (+3 more) | 9 |
| Air Pollutants | decreases expression, increases abundance, affects response to substance | 3 |
| Lead | affects response to substance, increases response to substance | 3 |
| bisphenol A | decreases expression, affects cotreatment, increases expression | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| Vehicle Emissions | affects response to substance, increases expression | 2 |
| Paraquat | decreases response to substance, affects reaction, decreases expression, affects response to substance | 2 |
| Valproic Acid | affects cotreatment, increases expression, affects expression | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| Asian ginseng | decreases expression, decreases reaction, affects cotreatment, increases expression | 1 |
| ginger extract | decreases expression, increases abundance | 1 |
| bufotalin | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| cinnamaldehyde | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| zinc protoporphyrin | affects abundance | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| ceric oxide | decreases expression | 1 |
| hydroquinone | decreases expression | 1 |
| cobalt oxide | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | increases expression | 1 |
| torcetrapib | increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Arsenic Trioxide | decreases response to substance | 1 |
| Acetaminophen | decreases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
Cellosaurus cell lines
39 cell lines: 33 transformed cell line, 5 cancer cell line, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_4W10 | GM16028 | Transformed cell line | Female |
| CVCL_5A96 | GM14620 | Transformed cell line | Male |
| CVCL_5A97 | GM14621 | Transformed cell line | Male |
| CVCL_5A99 | GM14631 | Transformed cell line | Female |
| CVCL_5B00 | GM14640 | Transformed cell line | Male |
| CVCL_5B01 | GM14650 | Transformed cell line | Female |
| CVCL_5B02 | GM14651 | Transformed cell line | Male |
| CVCL_5B03 | GM14652 | Transformed cell line | Male |
| CVCL_5B04 | GM14657 | Transformed cell line | Female |
| CVCL_5B05 | GM14685 | Transformed cell line | Male |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00157690 | PHASE4 | COMPLETED | Study of Alendronate to Prevent and Treat Osteoporosis in Cystic Fibrosis Patients |
| NCT00208078 | PHASE4 | TERMINATED | Effect of Non-Invasive Ventilation in Cystic Fibrosis Patient With Chronic Respiratory Failure. |
| NCT00244270 | PHASE4 | COMPLETED | Cystic Fibrosis and Totally Implantable Vascular Access Devices |
| NCT00333385 | PHASE4 | TERMINATED | Continuous Versus Short Infusions of Ceftazidime in Cystic Fibrosis |
| NCT00411736 | PHASE4 | COMPLETED | Scandinavian Cystic Fibrosis Azithromycin Study |
| NCT00418470 | PHASE4 | TERMINATED | Prolonging the Duration of Peripheral Venous Catheters in Cystic Fibrosis People |
| NCT00431964 | PHASE4 | COMPLETED | Effect of Azithromycin on Lung Function in 6-18 Year-olds With Cystic Fibrosis (CF) Not Infected With P. Aeruginosa |
| NCT00434278 | PHASE4 | TERMINATED | A Trial of Pulmozyme Withdrawal on Exercise Tolerance in Cystic Fibrosis Subjects With Severe Lung Disease (TOPIC) |
| NCT00483769 | PHASE4 | COMPLETED | One Year Glargine Treatment in CFRD Children and Adolescents |
| NCT00528190 | PHASE4 | COMPLETED | Treatment of Aspergillus Fumigatus (a Fungal Infection) in Patients With Cystic Fibrosis |
| NCT00557089 | PHASE4 | COMPLETED | The Effect of rhDNase on Ventilation Inhomogeneity in Patients With Cystic Fibrosis |
| NCT00572975 | PHASE4 | COMPLETED | Malabsorption Blood Test:Toward a Novel Approach to Quantify Steatorrhea |
| NCT00680316 | PHASE4 | TERMINATED | A Study of Pulmozyme® (Dornase Alpha) in 3- to 5-Year-Old Patients With Cystic Fibrosis |
| NCT00685035 | PHASE4 | COMPLETED | Comparison of Airway Clearance Therapy in Cystic Fibrosis Using the Same VEST Therapy Device But With Different Settings |
| NCT00744250 | PHASE4 | TERMINATED | Intraduodenal Aspiration Study to Assess the Bioavailability of Oral Pancrecarb® Compared to Placebo Control |
| NCT00787917 | PHASE4 | TERMINATED | An Exploratory Study to Assess Multiple Doses of Omalizumab in Patients With Cystic Fibrosis Complicated by Acute Bronchopulmonary Aspergillosis (ABPA) |
| NCT00843817 | PHASE4 | COMPLETED | RhDNase and Biodistribution of PMN Serine Proteases in Cystic Fibrosis Sputum |
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| NCT01667094 | PHASE4 | UNKNOWN | A Study Comparing Continuous Infusion Antibiotics to Standard Treatment for Lung Infections in Cystic Fibrosis |
| NCT01694069 | PHASE4 | TERMINATED | Continuous Infusion Piperacillin-tazobactam for the Treatment of Cystic Fibrosis |
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| NCT01937325 | PHASE4 | UNKNOWN | CPET in CF Patients With One G551D Mutation Taking VX770 |
| NCT02015663 | PHASE4 | TERMINATED | Tobramycin Inhalation Powder (TIP) Administered Once Daily Continuously Versus TIP Administered BID in 28 Day on / 28 Day Off Cycles |
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Related Atlas pages
- Associated diseases: hemochromatosis type 1, cystic fibrosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Alzheimer disease type 1, cystic fibrosis, familial porphyria cutanea tarda, hemochromatosis type 1, hemochromatosis type 2, hereditary hemochromatosis, microvascular complications of diabetes, susceptibility to, 7, neuroendocrine neoplasm, osteoarthritis, hip, peripheral nervous system disorder, skin sensitivity to sun, variegate porphyria