HID1
gene geneOn this page
Also known as DMC1HID-1
Summary
HID1 (HID1 domain containing, HGNC:15736) is a protein-coding gene on chromosome 17q25.1, encoding Protein HID1 (Q8IV36). May play an important role in the development of cancers in a broad range of tissues.
Predicted to act upstream of or within several processes, including insulin processing; secretory granule maturation; and vacuole fusion, non-autophagic. Located in Golgi apparatus; cytoplasmic microtubule; and cytosol. Implicated in developmental and epileptic encephalopathy 105.
Source: NCBI Gene 283987 — RefSeq curated summary.
At a glance
- Gene–disease (curated): developmental and epileptic encephalopathy 105 with hypopituitarism (Strong, GenCC) — +3 more curated relationships
- GWAS associations: 6
- Clinical variants (ClinVar): 202 total — 8 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 26
- MANE Select transcript:
NM_030630
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15736 |
| Approved symbol | HID1 |
| Name | HID1 domain containing |
| Location | 17q25.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DMC1, HID-1 |
| Ensembl gene | ENSG00000167861 |
| Ensembl biotype | protein_coding |
| OMIM | 605752 |
| Entrez | 283987 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 18 protein_coding, 5 retained_intron, 4 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000318565, ENST00000425042, ENST00000525128, ENST00000528902, ENST00000530857, ENST00000530904, ENST00000532395, ENST00000532894, ENST00000532900, ENST00000534480, ENST00000578002, ENST00000579818, ENST00000581676, ENST00000583244, ENST00000879335, ENST00000879336, ENST00000879337, ENST00000879338, ENST00000879339, ENST00000879340, ENST00000879341, ENST00000879342, ENST00000879343, ENST00000879344, ENST00000879345, ENST00000879346, ENST00000911522, ENST00000967000
RefSeq mRNA: 1 — MANE Select: NM_030630
NM_030630
CCDS: CCDS32726
Canonical transcript exons
ENST00000425042 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001330028 | 74972591 | 74972759 |
| ENSE00002145911 | 74950742 | 74951633 |
| ENSE00003486644 | 74962234 | 74962340 |
| ENSE00003508873 | 74952269 | 74952360 |
| ENSE00003514948 | 74951905 | 74952063 |
| ENSE00003523432 | 74953006 | 74953086 |
| ENSE00003543385 | 74960026 | 74960248 |
| ENSE00003546761 | 74955792 | 74955956 |
| ENSE00003553001 | 74962965 | 74963081 |
| ENSE00003553717 | 74958911 | 74959051 |
| ENSE00003583923 | 74963740 | 74963910 |
| ENSE00003588095 | 74954138 | 74954365 |
| ENSE00003643680 | 74961873 | 74961989 |
| ENSE00003661798 | 74964483 | 74964632 |
| ENSE00003667528 | 74958141 | 74958219 |
| ENSE00003668774 | 74953545 | 74953651 |
| ENSE00003676651 | 74959881 | 74959937 |
| ENSE00003677754 | 74958327 | 74958478 |
| ENSE00003679074 | 74958673 | 74958763 |
Expression profiles
Bgee: expression breadth ubiquitous, 212 present calls, max score 98.99.
FANTOM5 (CAGE): breadth broad, TPM avg 8.8018 / max 784.6361, expressed in 907 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 168028 | 4.6845 | 669 |
| 168029 | 3.9452 | 766 |
| 168026 | 0.1104 | 38 |
| 168030 | 0.0617 | 34 |
Top tissues by expression
248 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 98.99 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.92 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.84 | gold quality |
| body of pancreas | UBERON:0001150 | 98.28 | gold quality |
| cerebellum | UBERON:0002037 | 97.57 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.06 | gold quality |
| body of stomach | UBERON:0001161 | 95.49 | gold quality |
| pancreas | UBERON:0001264 | 95.29 | gold quality |
| adenohypophysis | UBERON:0002196 | 95.00 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 94.74 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.57 | gold quality |
| pituitary gland | UBERON:0000007 | 94.04 | gold quality |
| right uterine tube | UBERON:0001302 | 94.02 | gold quality |
| stomach | UBERON:0000945 | 93.56 | gold quality |
| minor salivary gland | UBERON:0001830 | 93.23 | gold quality |
| hypothalamus | UBERON:0001898 | 93.17 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 93.05 | gold quality |
| pancreatic ductal cell | CL:0002079 | 92.67 | gold quality |
| islet of Langerhans | UBERON:0000006 | 92.55 | gold quality |
| spinal cord | UBERON:0002240 | 92.24 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 92.10 | gold quality |
| ileal mucosa | UBERON:0000331 | 91.78 | gold quality |
| prefrontal cortex | UBERON:0000451 | 91.77 | gold quality |
| amygdala | UBERON:0001876 | 91.76 | gold quality |
| putamen | UBERON:0001874 | 91.65 | gold quality |
| gall bladder | UBERON:0002110 | 91.39 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 91.15 | gold quality |
| nucleus accumbens | UBERON:0001882 | 90.97 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.57 | gold quality |
| apex of heart | UBERON:0002098 | 90.46 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.84 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
47 targeting HID1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-LET-7A-2-3P | 99.87 | 70.53 | 1921 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-LET-7G-3P | 99.85 | 70.43 | 1929 |
| HSA-MIR-6512-3P | 99.65 | 66.07 | 1468 |
| HSA-MIR-6720-5P | 99.65 | 66.22 | 1459 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-5580-5P | 99.38 | 66.96 | 1139 |
| HSA-MIR-329-5P | 99.27 | 68.11 | 1597 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-4763-3P | 99.10 | 67.83 | 2649 |
| HSA-MIR-5701 | 98.97 | 69.54 | 1502 |
| HSA-MIR-6846-5P | 98.81 | 65.86 | 1121 |
| HSA-MIR-6848-5P | 98.81 | 65.49 | 1126 |
| HSA-MIR-6501-3P | 98.71 | 67.45 | 1480 |
| HSA-MIR-423-5P | 98.69 | 67.48 | 1522 |
| HSA-MIR-3184-5P | 98.56 | 67.13 | 1491 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
| HSA-MIR-4266 | 98.53 | 67.29 | 1035 |
| HSA-MIR-1199-5P | 98.44 | 66.51 | 829 |
| HSA-MIR-6751-3P | 98.44 | 66.35 | 835 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
Literature-anchored findings (GeneRIF, showing 3)
- mammalian HID-1 localized to the medial- and trans- Golgi apparatus as well as the cytosol. (PMID:21337012)
- Authors propose that HID-1 influences early steps in LDCV formation by controlling dense core formation at the TGN. (PMID:29074564)
- Mutations in HID1 Cause Syndromic Infantile Encephalopathy and Hypopituitarism. (PMID:33999436)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | hid1a | ENSDARG00000021846 |
| mus_musculus | Hid1 | ENSMUSG00000034586 |
| rattus_norvegicus | Hid1 | ENSRNOG00000003464 |
| drosophila_melanogaster | CG8841 | FBGN0033713 |
| caenorhabditis_elegans | WBGENE00001844 |
Protein
Protein identifiers
Protein HID1 — Q8IV36 (reviewed: Q8IV36)
Alternative names: Down-regulated in multiple cancers 1, HID1 domain-containing protein, Protein hid-1 homolog
All UniProt accessions (5): E9PIM7, E9PMS4, Q8IV36, J3KSF1, X6R4D2
UniProt curated annotations — full annotation on UniProt →
Function. May play an important role in the development of cancers in a broad range of tissues.
Subcellular location. Cytoplasm. Golgi apparatus membrane.
Tissue specificity. Expressed in heart, skeletal muscle, colon, spleen, kidney, liver, small intestine and lung. Highest expression is seen in brain and placenta. Loss of expression is seen in some breast, cervical, hepatocellular, lung, thyroid, gastric and renal cell-cancer lines. Highly expressed in secretory cell lines. Expressed in almost all regions of the brain, in cerebellum, anterior frontal cortex, and striatum.
Disease relevance. Developmental and epileptic encephalopathy 105 with hypopituitarism (DEE105) [MIM:619983] A form of epileptic encephalopathy, a heterogeneous group of early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE105 is an autosomal recessive form characterized by onset of seizures in the first weeks or months of life. Affected individuals have hypopituitarism in association with profoundly impaired development with almost no acquisition of skills, brain atrophy, thin corpus callosum, and small pituitary gland. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the hid-1 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8IV36-1 | 1 | yes |
| Q8IV36-2 | 2 | |
| Q8IV36-3 | 3 |
RefSeq proteins (1): NP_085133* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026705 | HID1/Ecm30 | Family |
Pfam: PF12722
UniProt features (16 total): sequence variant 4, splice variant 2, region of interest 2, compositionally biased region 2, modified residue 2, initiator methionine 1, chain 1, sequence conflict 1, lipid moiety-binding region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8IV36-F1 | 86.13 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 653, 670, 2
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 360 (showing top):
AHRARNT_01, GOBP_MEIOTIC_CHROMOSOME_SEGREGATION, REACTOME_MEIOTIC_RECOMBINATION, GOBP_CHROMOSOME_ORGANIZATION, MYOGENIN_Q6, GOBP_VACUOLE_ORGANIZATION, GOBP_VESICLE_ORGANIZATION, GOZGIT_ESR1_TARGETS_DN, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_DN, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_DN, GOBP_OOGENESIS, GOBP_REGULATION_OF_HORMONE_LEVELS, AP4_Q6, TAL1ALPHAE47_01, GOBP_MALE_GAMETE_GENERATION
GO Biological Process (4): response to glucose (GO:0009749), insulin processing (GO:0030070), vacuole fusion, non-autophagic (GO:0042144), secretory granule maturation (GO:0061792)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (10): Golgi trans cisterna (GO:0000138), cytoplasm (GO:0005737), Golgi apparatus (GO:0005794), Golgi medial cisterna (GO:0005797), cytosol (GO:0005829), cytoplasmic microtubule (GO:0005881), membrane (GO:0016020), extracellular exosome (GO:0070062), cytoplasmic side of Golgi membrane (GO:0098548), Golgi membrane (GO:0000139)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cytoplasm | 3 |
| Golgi cisterna | 2 |
| response to hexose | 1 |
| peptide hormone processing | 1 |
| insulin metabolic process | 1 |
| vacuole fusion | 1 |
| secretory granule organization | 1 |
| anatomical structure maturation | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| microtubule | 1 |
| extracellular vesicle | 1 |
| Golgi membrane | 1 |
| cytoplasmic side of membrane | 1 |
| Golgi apparatus | 1 |
| bounding membrane of organelle | 1 |
Protein interactions and networks
STRING
568 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HID1 | DYM | Q7RTS9 | 597 |
| HID1 | CYP4B1 | P13584 | 479 |
| HID1 | EIPR1 | Q53HC9 | 454 |
| HID1 | TMEM128 | Q5BJH2 | 434 |
| HID1 | OTOP2 | Q7RTS6 | 406 |
| HID1 | CCDC186 | Q7Z3E2 | 403 |
| HID1 | FAM234B | A2RU67 | 390 |
| HID1 | SWSAP1 | Q6NVH7 | 370 |
| HID1 | SRARP | Q8NEQ6 | 370 |
| HID1 | IFFO1 | Q0D2I5 | 370 |
| HID1 | TRAM1 | Q15629 | 363 |
| HID1 | MYO1F | O00160 | 354 |
| HID1 | ATOSA | Q32MH5 | 354 |
| HID1 | MYO1E | Q12965 | 351 |
| HID1 | XRCC3 | O43542 | 351 |
IntAct
52 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CSDE1 | HID1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HID1 | CSDE1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CELF3 | HID1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HID1 | UBL5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EHHADH | HID1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CHAT | HID1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HID1 | FGFR3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HID1 | HRAS | psi-mi:“MI:0915”(physical association) | 0.560 |
| TSC1 | HID1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| UBQLN1 | HID1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HID1 | SPRED1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HID1 | CBS | psi-mi:“MI:0915”(physical association) | 0.550 |
| CBS | HID1 | psi-mi:“MI:0915”(physical association) | 0.550 |
| HID1 | INPPL1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| INPPL1 | HID1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| MYBL1 | HID1 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (28): HID1 (Two-hybrid), HID1 (Two-hybrid), HID1 (Two-hybrid), HID1 (Two-hybrid), HID1 (Two-hybrid), HID1 (Two-hybrid), HID1 (Proximity Label-MS), HID1 (Affinity Capture-MS), HID1 (Two-hybrid), HID1 (Two-hybrid), HID1 (Two-hybrid), UBL5 (Two-hybrid), HID1 (Proximity Label-MS), HID1 (Proximity Label-MS), HID1 (Two-hybrid)
ESM2 similar proteins: A0A5F8AH41, A0AVI4, A7S641, O75843, P10937, P25235, P40935, P70345, Q06AU9, Q08DJ7, Q08DK0, Q0IJ33, Q14AI0, Q28647, Q28CM7, Q3V3N7, Q4R7D0, Q503C8, Q5FVF4, Q5R5N9, Q5RDY9, Q5XIL6, Q5ZI25, Q68F70, Q6IR55, Q6NWH5, Q6PD82, Q74ZJ1, Q7KNA0, Q7QIL2, Q80YU0, Q8CHY3, Q8CIM8, Q8IV36, Q8K304, Q8MRQ4, Q8NFJ9, Q8R1F6, Q8R307, Q8WW52
Diamond homologs: Q54JJ6, Q8IV36, Q8R1F6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
202 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 6 |
| Uncertain significance | 153 |
| Likely benign | 4 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1098407 | NM_030630.3(HID1):c.81_82delinsA (p.Asp28fs) | Pathogenic |
| 1298723 | NM_030630.3(HID1):c.957dup (p.Gly320fs) | Pathogenic |
| 1328944 | NM_007068.4(DMC1):c.364A>G (p.Thr122Ala) | Pathogenic |
| 1328945 | NM_007068.4(DMC1):c.860C>A (p.Pro287His) | Pathogenic |
| 1700641 | NM_030630.3(HID1):c.1297C>T (p.Arg433Trp) | Pathogenic |
| 1700642 | NM_030630.3(HID1):c.2318dup (p.Val774fs) | Pathogenic |
| 1700643 | NM_030630.3(HID1):c.560G>A (p.Gly187Asp) | Pathogenic |
| 4278396 | NM_030630.3(HID1):c.1978_1979delinsGGGCCTC (p.Ser660fs) | Pathogenic |
| 1098406 | NM_030630.3(HID1):c.1149+1G>T | Likely pathogenic |
| 3629598 | NM_007068.4(DMC1):c.164C>T (p.Thr55Ile) | Likely pathogenic |
| 3629599 | NM_007068.4(DMC1):c.490A>G (p.Thr164Ala) | Likely pathogenic |
| 3629600 | NM_007068.4(DMC1):c.581A>G (p.Tyr194Cys) | Likely pathogenic |
| 4278015 | NM_030630.3(HID1):c.2259del (p.Ala754fs) | Likely pathogenic |
| 986224 | NM_030630.3(HID1):c.2002C>T (p.Arg668Ter) | Likely pathogenic |
SpliceAI
5914 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:74951940:C:CT | donor_gain | 1.0000 |
| 17:74952059:GGCCC:G | acceptor_gain | 1.0000 |
| 17:74952061:CCC:C | acceptor_gain | 1.0000 |
| 17:74952062:CC:C | acceptor_gain | 1.0000 |
| 17:74952062:CCC:C | acceptor_gain | 1.0000 |
| 17:74952063:CC:C | acceptor_gain | 1.0000 |
| 17:74952064:C:CA | acceptor_loss | 1.0000 |
| 17:74952064:C:CC | acceptor_gain | 1.0000 |
| 17:74952065:T:C | acceptor_loss | 1.0000 |
| 17:74952264:CTCA:C | donor_gain | 1.0000 |
| 17:74952266:CA:C | donor_loss | 1.0000 |
| 17:74952267:A:AC | donor_gain | 1.0000 |
| 17:74952268:C:CA | donor_gain | 1.0000 |
| 17:74952268:CT:C | donor_gain | 1.0000 |
| 17:74952268:CTT:C | donor_gain | 1.0000 |
| 17:74952268:CTTG:C | donor_gain | 1.0000 |
| 17:74952268:CTTGT:C | donor_gain | 1.0000 |
| 17:74952358:GACCT:G | acceptor_loss | 1.0000 |
| 17:74952361:CT:C | acceptor_loss | 1.0000 |
| 17:74953005:CCCA:C | donor_gain | 1.0000 |
| 17:74953095:C:CT | acceptor_gain | 1.0000 |
| 17:74953095:C:T | acceptor_gain | 1.0000 |
| 17:74953543:ACCC:A | donor_gain | 1.0000 |
| 17:74953544:CCCC:C | donor_gain | 1.0000 |
| 17:74954133:CAGAC:C | donor_loss | 1.0000 |
| 17:74954137:C:A | donor_loss | 1.0000 |
| 17:74954218:T:TA | donor_gain | 1.0000 |
| 17:74955787:CTCAC:C | donor_loss | 1.0000 |
| 17:74955788:TCA:T | donor_loss | 1.0000 |
| 17:74955789:CACC:C | donor_loss | 1.0000 |
AlphaMissense
5146 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:74951588:A:C | F783L | 1.000 |
| 17:74951588:A:T | F783L | 1.000 |
| 17:74951589:A:G | F783S | 1.000 |
| 17:74951590:A:G | F783L | 1.000 |
| 17:74951614:A:G | W775R | 1.000 |
| 17:74951614:A:T | W775R | 1.000 |
| 17:74951924:A:G | W762R | 1.000 |
| 17:74951924:A:T | W762R | 1.000 |
| 17:74951940:C:A | W756C | 1.000 |
| 17:74951940:C:G | W756C | 1.000 |
| 17:74951942:A:G | W756R | 1.000 |
| 17:74951942:A:T | W756R | 1.000 |
| 17:74951968:T:C | Y747C | 1.000 |
| 17:74951969:A:C | Y747D | 1.000 |
| 17:74951969:A:G | Y747H | 1.000 |
| 17:74951983:A:G | I742T | 1.000 |
| 17:74951983:A:T | I742N | 1.000 |
| 17:74952001:A:G | L736P | 1.000 |
| 17:74952004:A:G | L735P | 1.000 |
| 17:74952007:C:T | G734E | 1.000 |
| 17:74952008:C:G | G734R | 1.000 |
| 17:74952008:C:T | G734R | 1.000 |
| 17:74952028:A:G | L727P | 1.000 |
| 17:74952302:A:G | L704P | 1.000 |
| 17:74955804:A:C | Y542D | 1.000 |
| 17:74958142:G:C | N490K | 1.000 |
| 17:74958142:G:T | N490K | 1.000 |
| 17:74958403:A:G | L439P | 1.000 |
| 17:74958429:G:C | S430R | 1.000 |
| 17:74958429:G:T | S430R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000153780 (17:74970377 C>A), RS1000324891 (17:74959232 T>A,G), RS1000364735 (17:74970951 T>A), RS1000392067 (17:74971238 T>C), RS1000601150 (17:74958550 G>A), RS1000632025 (17:74958369 G>A,T), RS1001054607 (17:74960730 G>A), RS1001128165 (17:74952811 A>G), RS1001129054 (17:74972758 A>G), RS1001139957 (17:74954732 G>A), RS1001242343 (17:74953838 G>A), RS1001614212 (17:74963617 T>C), RS1001625698 (17:74963887 T>A), RS1001789564 (17:74970248 A>G), RS1001872239 (17:74959326 G>A)
Disease associations
OMIM: gene MIM:605752 | disease phenotypes: MIM:619983
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental and epileptic encephalopathy 105 with hypopituitarism | Strong | Autosomal recessive |
| primary ovarian failure | Strong | Autosomal recessive |
| azoospermia | Strong | Autosomal recessive |
| spermatogenic failure | Limited | Autosomal recessive |
Mondo (4): azoospermia (MONDO:0100459), developmental and epileptic encephalopathy 105 with hypopituitarism (MONDO:0031028), primary ovarian failure (MONDO:0005387), spermatogenic failure (MONDO:0004983)
Orphanet (1): NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
26 total (26 of 26 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000054 | Micropenis |
| HP:0000316 | Hypertelorism |
| HP:0000486 | Strabismus |
| HP:0000527 | Long eyelashes |
| HP:0000556 | Retinal dystrophy |
| HP:0000639 | Nystagmus |
| HP:0000664 | Synophrys |
| HP:0000998 | Hypertrichosis |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001270 | Motor delay |
| HP:0001344 | Absent speech |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002384 | Focal impaired awareness seizure |
| HP:0002521 | Hypsarrhythmia |
| HP:0003593 | Infantile onset |
| HP:0003623 | Neonatal onset |
| HP:0008245 | Pituitary hypothyroidism |
| HP:0010627 | Anterior pituitary hypoplasia |
| HP:0010845 | EEG with generalized slow activity |
| HP:0011195 | EEG with focal sharp slow waves |
| HP:0012444 | Brain atrophy |
| HP:0032792 | Tonic seizure |
| HP:0032794 | Myoclonic seizure |
| HP:0033725 | Thin corpus callosum |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002817_15 | Alzheimer’s disease in APOE e4- carriers | 9.000000e-07 |
| GCST005312_48 | Menopause (age at onset) | 2.000000e-13 |
| GCST006019_42 | Gamma glutamyl transferase levels | 3.000000e-10 |
| GCST007561_72 | Sleep duration | 4.000000e-08 |
| GCST010242_28 | HDL cholesterol levels | 5.000000e-16 |
| GCST90002383_109 | Hematocrit | 4.000000e-13 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004704 | age at menopause |
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004348 | hematocrit |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D053713 | Azoospermia | C12.100.500.430.380; C12.100.750.700.380; C12.200.294.430.380 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects expression, affects cotreatment, increases abundance, increases expression | 3 |
| Cyclosporine | increases expression | 3 |
| bisphenol A | affects expression, decreases methylation | 2 |
| Air Pollutants | increases abundance, increases expression | 2 |
| Tunicamycin | increases expression | 2 |
| Particulate Matter | increases abundance, increases expression | 2 |
| propionaldehyde | increases expression | 1 |
| N-acetyl-4-benzoquinoneimine | affects response to substance | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| clothianidin | decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Calcitriol | increases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Nickel | decreases expression | 1 |
| Niclosamide | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Metribolone | increases expression | 1 |
| Thapsigargin | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
102 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT02307994 | PHASE4 | UNKNOWN | Clinical Research on Effectiveness and Safety of Treatment of Severe Oligospermia or Azoospermia With uFSH |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT02275169 | PHASE3 | UNKNOWN | FSH Treatment for Non-obstructive Azoospermic Patients |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT02544191 | PHASE2 | UNKNOWN | GnRHa Combined With hCG and hMG for Treatment of Patients With Non-obstructive Azoospermia |
| NCT03762967 | PHASE2 | UNKNOWN | Autologous Adipose-Derived Adult Stromal Vascular Cell Administration for Male Patients With Infertility |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
| NCT02043743 | PHASE1/PHASE2 | UNKNOWN | Autologous Stem Cells Transplantation in Patients With Idiopathic and Drug Induced Premature Ovarian Failure |
| NCT02062931 | PHASE1/PHASE2 | UNKNOWN | Autologous Mesenchymal Stem Cells Transplantation In Women With Premature Ovarian Failure |
| NCT02151890 | PHASE1/PHASE2 | COMPLETED | Pregnancy After Stem Cell Transplantation in Premature Ovarian Failure |
| NCT02372474 | PHASE1/PHASE2 | COMPLETED | It is a Real The First Baby Of Autologous Stem Cell Therapy in Premature Ovarian Failure |
| NCT02603744 | PHASE1/PHASE2 | UNKNOWN | Autologous Adipose Derived Mesenchymal Stromal Cells Transplantation in Women With Premature Ovarian Failure (POF) |
| NCT02644447 | PHASE1/PHASE2 | COMPLETED | Transplantation of HUC-MSCs With Injectable Collagen Scaffold for POF |
| NCT03069209 | PHASE1/PHASE2 | UNKNOWN | Autologous Bone Marrow-Derived Stem Cell Transplantation in Patients With Premature Ovarian Failure (POF) |
| NCT03985462 | PHASE1/PHASE2 | WITHDRAWN | Very Small Embryonic-like Stem Cells for Ovary |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT04071574 | PHASE1/PHASE2 | COMPLETED | Comparative Study on the Efficacy of Ovarian Stimulation Protocols on the Success Rate of ICSI in Female Infertility |
| NCT04922398 | PHASE1/PHASE2 | UNKNOWN | Ovarian Injection of PRP (Platelet -Rich Plasma) Vs Normal Saline in Premature Ovarian Insufficiency |
| NCT05462379 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Autologous Heterotopic Fresh Ovarian Graft in Woman With LACC Eligible for Pelvic Radiotherapy Treatment. |
| NCT06202547 | PHASE1/PHASE2 | UNKNOWN | Intra-ovarian Injection of MSC-EVs in Idiopathic Premature Ovarian Failure |
| NCT01129947 | EARLY_PHASE1 | WITHDRAWN | The Use of DHEA in Women With Premature Ovarian Failure |
| NCT05522634 | EARLY_PHASE1 | UNKNOWN | A Clinical Study of Chinese Herbal Compound TJAOA101 in the Treatment of Premature Ovarian Insufficiency |
| NCT07308327 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | The Influence of Gut Microbiota on Ovarian Function: A Single-center, Randomized,Double Blind, Parallel-controlled, Exploratory Clinical Trial |
Related Atlas pages
- Associated diseases: developmental and epileptic encephalopathy 105 with hypopituitarism, spermatogenic failure 50, primary ovarian failure, azoospermia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): azoospermia, developmental and epileptic encephalopathy 105 with hypopituitarism, primary ovarian failure, spermatogenic failure