HLA-DRB1
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Summary
HLA-DRB1 (major histocompatibility complex, class II, DR beta 1, HGNC:4948) is a protein-coding gene on chromosome 6p21.32, encoding HLA class II histocompatibility antigen, DRB1 beta chain (P01911). A beta chain of antigen-presenting major histocompatibility complex class II (MHCII) molecule.
HLA-DRB1 belongs to the HLA class II beta chain paralogs. The class II molecule is a heterodimer consisting of an alpha (DRA) and a beta chain (DRB), both anchored in the membrane. It plays a central role in the immune system by presenting peptides derived from extracellular proteins. Class II molecules are expressed in antigen presenting cells. The beta chain is approximately 26-28 kDa. It is encoded by 6 exons. Exon one encodes the leader peptide; exons 2 and 3 encode the two extracellular domains; exon 4 encodes the transmembrane domain; and exon 5 encodes the cytoplasmic tail. Within the DR molecule the beta chain contains all the polymorphisms specifying the peptide binding specificities. Hundreds of DRB1 alleles have been described and some alleles have increased frequencies associated with certain diseases or conditions. For example, DRB1*1302 has been related to acute and chronic hepatitis B virus persistence. There are multiple pseudogenes of this gene.
Source: NCBI Gene 3123 — RefSeq curated summary.
At a glance
- Gene–disease (curated): systemic lupus erythematosus (Supportive, GenCC)
- GWAS associations: 303
- Clinical variants (ClinVar): 132 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 306
- Druggable target: yes
- MANE Select transcript:
NM_002124
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4948 |
| Approved symbol | HLA-DRB1 |
| Name | major histocompatibility complex, class II, DR beta 1 |
| Location | 6p21.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000196126 |
| Ensembl biotype | protein_coding |
| OMIM | 142857 |
| Entrez | 3123 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 7 protein_coding, 3 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000360004, ENST00000696610, ENST00000696611, ENST00000696612, ENST00000696613, ENST00000696614, ENST00000859897, ENST00000859898, ENST00000859899, ENST00000859900, ENST00000859901, ENST00000963203
RefSeq mRNA: 1 — MANE Select: NM_002124
NM_002124
CCDS: CCDS47409
Canonical transcript exons
ENST00000360004 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003967851 | 32581557 | 32581838 |
| ENSE00003967852 | 32589643 | 32589848 |
| ENSE00003967854 | 32580746 | 32580856 |
| ENSE00003967857 | 32584109 | 32584378 |
| ENSE00003967859 | 32580247 | 32580270 |
| ENSE00003978165 | 32578775 | 32579104 |
Expression profiles
Bgee: expression breadth ubiquitous, 131 present calls, max score 99.55.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2366 / max 37.9577, expressed in 114 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 72978 | 6.8048 | 524 |
| 72979 | 2.9042 | 547 |
| 72976 | 0.2769 | 120 |
| 72977 | 0.2366 | 114 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| vermiform appendix | UBERON:0001154 | 99.55 | gold quality |
| granulocyte | CL:0000094 | 99.53 | gold quality |
| right lung | UBERON:0002167 | 99.48 | gold quality |
| leukocyte | CL:0000738 | 99.46 | gold quality |
| lymph node | UBERON:0000029 | 99.46 | gold quality |
| monocyte | CL:0000576 | 99.45 | gold quality |
| spleen | UBERON:0002106 | 99.45 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 99.45 | gold quality |
| gall bladder | UBERON:0002110 | 99.26 | gold quality |
| duodenum | UBERON:0002114 | 99.26 | gold quality |
| right coronary artery | UBERON:0001625 | 99.01 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 98.95 | gold quality |
| rectum | UBERON:0001052 | 98.91 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 98.81 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 98.79 | gold quality |
| adipose tissue | UBERON:0001013 | 98.71 | gold quality |
| tibial nerve | UBERON:0001323 | 98.61 | gold quality |
| fallopian tube | UBERON:0003889 | 98.45 | gold quality |
| omental fat pad | UBERON:0010414 | 98.43 | gold quality |
| small intestine | UBERON:0002108 | 98.35 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 98.35 | gold quality |
| apex of heart | UBERON:0002098 | 98.30 | gold quality |
| metanephros cortex | UBERON:0010533 | 98.30 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 98.25 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 98.13 | gold quality |
| left coronary artery | UBERON:0001626 | 98.08 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 98.07 | gold quality |
| left uterine tube | UBERON:0001303 | 98.01 | gold quality |
| blood | UBERON:0000178 | 97.84 | gold quality |
| endocervix | UBERON:0000458 | 97.66 | gold quality |
Single-cell (SCXA)
Detected in 52 experiment(s), a significant marker in 46.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 14842.99 |
| E-GEOD-135922 | yes | 9340.32 |
| E-HCAD-36 | yes | 8926.77 |
| E-CURD-120 | yes | 8537.33 |
| E-CURD-126 | yes | 8502.74 |
| E-MTAB-8322 | yes | 8305.37 |
| E-HCAD-15 | yes | 8183.42 |
| E-MTAB-9906 | yes | 7518.17 |
| E-HCAD-24 | yes | 6590.85 |
| E-CURD-79 | yes | 6442.94 |
| E-GEOD-84465 | yes | 5756.27 |
| E-GEOD-134144 | yes | 5300.28 |
| E-MTAB-6308 | yes | 4302.38 |
| E-MTAB-8410 | yes | 3937.56 |
| E-GEOD-130148 | yes | 3812.67 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, ATF3, ATF4, CIITA, DDIT3, DNMT3A, EHF, EPAS1, FOXC1, GLI3, ILF3, JUN, MYC, MYCN, NFKB, NR1H3, NR1H4, NR1I2, NR1I3, NR2C1, NR2C2, RARA, REL, RELA, RFX5, RFXANK, RFXAP, SP1, STAT1, THRA, TP53, VDR, VSX2, ZHX2
miRNA regulators (miRDB)
13 targeting HLA-DRB1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-544A | 99.84 | 68.66 | 1965 |
| HSA-MIR-6892-3P | 99.68 | 66.40 | 1178 |
| HSA-MIR-671-5P | 99.52 | 67.11 | 1277 |
| HSA-MIR-6165 | 99.44 | 67.12 | 1389 |
| HSA-MIR-1972 | 97.67 | 67.38 | 1172 |
| HSA-MIR-3190-3P | 97.61 | 66.95 | 1406 |
| HSA-MIR-15A-3P | 97.47 | 65.08 | 527 |
| HSA-MIR-939-5P | 97.10 | 65.80 | 1579 |
| HSA-MIR-4793-5P | 96.88 | 65.90 | 872 |
| HSA-MIR-4764-3P | 96.81 | 67.94 | 580 |
| HSA-MIR-1343-5P | 96.48 | 66.06 | 1506 |
Literature-anchored findings (GeneRIF, showing 19)
- alleles associated with multiple sclerosis (PMID:11519010)
- structural analysis of haplotypes binding an immunodominant peptide derived from type II collagen (PMID:11751969)
- Prevalence of human leukocyte antigen (HLA) DRB1 alleles in Kuwaiti children with juvenile rheumatoid arthritis (PMID:11841481)
- association of TNF alleles with HLA-DR, -DQ and -B alleles in 216 healthy individuals from the north of England (PMID:11841486)
- support is provided for roles of the DQ genes and the DRB1 gene (or a gene in linkage disequilibrium with it) in determining susceptibility to type 1 diabetes (PMID:11841488)
- A study was made on any association between these alleles and rheumatoid arthritis in a population of Colombian women. (PMID:11857065)
- Genotyping of HLA-DRB1 alleles in endometriosis. (PMID:11870103)
- Heterogeneity of HLA-DRB1*04 and its associated haplotypes in the North Indian population. (PMID:11916167)
- Genetic dissection of the human leukocyte antigen region by use of haplotypes of Tasmanians with multiple sclerosis. (PMID:11923913)
- Identification of sequence errors in HLA-DRB1*0801 and HLA-DRB1*12011 (PMID:11972881)
- Complete cDNA sequences of the HLA-DRB1*14011, *1402, *1403 and *1404 alleles. (PMID:11972886)
- HLA-DRB1, DQB1, and DQA1 allele profile in Brazilian patients with type 1 diabetes mellitus. (PMID:12021129)
- Henoch-Schonlein purpura and cutaneous leukocytoclastic angiitis exhibit different HLA-DRB1 genotype associations. (PMID:12022354)
- Association of HLA-DRB1*1502-DQB1*0501 haplotype with susceptibility to systemic lupus erythematosus (PMID:12028537)
- Novel HLA-DRB1 alleles discovered during routine sequencing based typing, DRB1*03052, DRB1*04032, DRB1*1139 and DRB1*1346. (PMID:12028548)
- Two new HLA-DRB1 alleles have been identified by sequencing based typing (SBT). (PMID:12028549)
- The transmission disequilibrium test suggests that HLA-DR4 and DR13 are linked to autism spectrum disorder. (PMID:12039413)
- high frequency of HLA-DRB1*1501-DQA1*0102-DQB1*0602 haplotype in paroxysmal nocturnal hemoglobinuria(PNH), including AA-PNH syndrome, and aplastic anemia (AA) patients. (PMID:12070003)
- HLA-DRB1*0701 restricted crosspriming against HLA-DRB1*1301; HLA-DRB1*1101 restricted crosspriming against HLA-DRB1*0101 (PMID:12072187)
Cross-species orthologs
1 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | H2-Eb2 | ENSMUSG00000067341 |
Paralogs (13): B2M (ENSG00000166710), HLA-DQB1 (ENSG00000179344), HLA-DQA1 (ENSG00000196735), HLA-DRB5 (ENSG00000198502), HLA-DOA (ENSG00000204252), HLA-DMA (ENSG00000204257), HLA-DRA (ENSG00000204287), HLA-DPB1 (ENSG00000223865), HLA-DPA1 (ENSG00000231389), HLA-DQB2 (ENSG00000232629), HLA-DQA2 (ENSG00000237541), HLA-DOB (ENSG00000241106), HLA-DMB (ENSG00000242574)
Protein
Protein identifiers
HLA class II histocompatibility antigen, DRB1 beta chain — P01911 (reviewed: P01911)
Alternative names: Human leukocyte antigen DRB1
All UniProt accessions (4): A0A8Q3WLF4, D7RIH8, P01911, X5DNQ0
UniProt curated annotations — full annotation on UniProt →
Function. A beta chain of antigen-presenting major histocompatibility complex class II (MHCII) molecule. In complex with the alpha chain HLA-DRA, displays antigenic peptides on professional antigen presenting cells (APCs) for recognition by alpha-beta T cell receptor (TCR) on HLA-DRB1-restricted CD4-positive T cells. This guides antigen-specific T-helper effector functions, both antibody-mediated immune response and macrophage activation, to ultimately eliminate the infectious agents and transformed cells. Typically presents extracellular peptide antigens of 10 to 30 amino acids that arise from proteolysis of endocytosed antigens in lysosomes. In the tumor microenvironment, presents antigenic peptides that are primarily generated in tumor-resident APCs likely via phagocytosis of apoptotic tumor cells or macropinocytosis of secreted tumor proteins. Presents peptides derived from intracellular proteins that are trapped in autolysosomes after macroautophagy, a mechanism especially relevant for T cell selection in the thymus and central immune tolerance. The selection of the immunodominant epitopes follows two processing modes: ‘bind first, cut/trim later’ for pathogen-derived antigenic peptides and ‘cut first, bind later’ for autoantigens/self-peptides. The anchor residue at position 1 of the peptide N-terminus, usually a large hydrophobic residue, is essential for high affinity interaction with MHCII molecules. Allele DRB101:01: Displays an immunodominant epitope derived from Bacillus anthracis pagA/protective antigen, PA (KLPLYISNPNYKVNVYAVT), to both naive and PA-specific memory CD4-positive T cells. Presents immunodominant HIV-1 gag peptide (FRDYVDRFYKTLRAEQASQE) on infected dendritic cells for recognition by TRAV24-TRBV2 TCR on CD4-positive T cells and controls viral load. May present to T-helper 1 cells several HRV-16 epitopes derived from capsid proteins VP1 (PRFSLPFLSIASAYYMFYDG) and VP2 (PHQFINLRSNNSATLIVPYV), contributing to viral clearance. Displays commonly recognized peptides derived from IAV external protein HA (PKYVKQNTLKLAT and SNGNFIAPEYAYKIVK) and from internal proteins M, NP and PB1, with M-derived epitope (GLIYNRMGAVTTEV) being the most immunogenic. Presents a self-peptide derived from COL4A3 (GWISLWKGFSF) to TCR (TRAV14 biased) on CD4-positive, FOXP3-positive regulatory T cells and mediates immune tolerance to self. May present peptides derived from oncofetal trophoblast glycoprotein TPBG 5T4, known to be recognized by both T-helper 1 and regulatory T cells. Displays with low affinity a self-peptide derived from MBP (VHFFKNIVTPRTP). Allele DRB103:01: May present to T-helper 1 cells an HRV-16 epitope derived from capsid protein VP2 (NEKQPSDDNWLNFDGTLLGN), contributing to viral clearance. Displays self-peptides derived from retinal SAG (NRERRGIALDGKIKHE) and thyroid TG (LSSVVVDPSIRHFDV). Presents viral epitopes derived from HHV-6B gH/U48 and U85 antigens to polyfunctional CD4-positive T cells with cytotoxic activity implicated in control of HHV-6B infection. Presents several immunogenic epitopes derived from C.tetani neurotoxin tetX, playing a role in immune recognition and long-term protection. Allele DRB104:01: Presents an immunodominant bacterial epitope derived from M.tuberculosis esxB/culture filtrate antigen CFP-10 (EISTNIRQAGVQYSR), eliciting CD4-positive T cell effector functions such as IFNG production and cytotoxic activity. May present to T-helper 1 cells an HRV-16 epitope derived from capsid protein VP2 (NEKQPSDDNWLNFDGTLLGN), contributing to viral clearance. Presents tumor epitopes derived from melanoma-associated TYR antigen (QNILLSNAPLGPQFP and DYSYLQDSDPDSFQD), triggering CD4-positive T cell effector functions such as GMCSF production. Displays preferentially citrullinated self-peptides derived from VIM (GVYATR/citSSAVR and SAVRAR/citSSVPGVR) and ACAN (VVLLVATEGR/ CitVRVNSAYQDK). Displays self-peptides derived from COL2A1. Allele DRB104:02: Displays native or citrullinated self-peptides derived from VIM. Allele DRB104:04: May present to T-helper 1 cells several HRV-16 epitopes derived from capsid proteins VP1 (HIVMQYMYVPPGAPIPTTRN) and VP2 (RGDSTITSQDVANAVVGYGV), contributing to viral clearance. Displays preferentially citrullinated self-peptides derived from VIM (SAVRAR/citSSVPGVR). Allele DRB104:05: May present to T-helper 1 cells an immunogenic epitope derived from tumor-associated antigen WT1 (KRYFKLSHLQMHSRKH), likely providing for effective antitumor immunity in a wide range of solid and hematological malignancies. Allele DRB105:01: Presents an immunodominant HIV-1 gag peptide (FRDYVDRFYKTLRAEQASQE) on infected dendritic cells for recognition by TRAV24-TRBV2 TCR on CD4-positive T cells and controls viral load. Allele DRB107:01: Upon EBV infection, presents latent antigen EBNA2 peptide (PRSPTVFYNIPPMPLPPSQL) to CD4-positive T cells, driving oligoclonal expansion and selection of a dominant virus-specific memory T cell subset with cytotoxic potential to directly eliminate virus-infected B cells. May present to T-helper 1 cells several HRV-16 epitopes derived from capsid proteins VP1 (PRFSLPFLSIASAYYMFYDG) and VP2 (VPYVNAVPMDSMVRHNNWSL), contributing to viral clearance. In the context of tumor immunesurveillance, may present to T-helper 1 cells an immunogenic epitope derived from tumor-associated antigen WT1 (MTEYKLVVVGAVGVGKSALTIQLI), likely providing for effective antitumor immunity in a wide range of solid and hematological malignancies. In metastatic epithelial tumors, presents to intratumoral CD4-positive T cells a KRAS neoantigen (MTEYKLVVVGAVGVGKSALTIQLI) carrying G12V hotspot driver mutation and may mediate tumor regression. Allele DRB111:01: Displays an immunodominant HIV-1 gag peptide (FRDYVDRFYKTLRAEQASQE) on infected dendritic cells for recognition by TRAV24-TRBV2 TCR on CD4-positive T cells and controls viral load. May present to T-helper 1 cells an HRV-16 epitope derived from capsid protein VP2 (SDRIIQITRGDSTITSQDVA), contributing to viral clearance. Presents several immunogenic epitopes derived from C.tetani neurotoxin tetX, playing a role in immune recognition and longterm protection. In the context of tumor immunesurveillance, may present tumor-derived neoantigens to CD4-positive T cells and trigger anti-tumor helper functions. Allele DRB113:01: Presents viral epitopes derived from HHV-6B antigens to polyfunctional CD4-positive T cells implicated in control of HHV-6B infection. Allele DRB115:01: May present to T-helper 1 cells an HRV-16 epitope derived from capsid protein VP2 (SNNSATLIVPYVNAVPMDSM), contributing to viral clearance. Displays a self-peptide derived from MBP (ENPVVHFFKNIVTPR). May present to T-helper 1 cells an immunogenic epitope derived from tumor-associated antigen WT1 (KRYFKLSHLQMHSRKH), likely providing for effective antitumor immunity in a wide range of solid and hematological malignancies. Allele DRB115:02: Displays an immunodominant HIV-1 gag peptide (FRDYVDRFYKTLRAEQASQE) on infected dendritic cells for recognition by TRAV24-TRBV2 TCR on CD4-positive T cells and controls viral load. May present to T-helper 1 cells an immunogenic epitope derived from tumor-associated antigen WT1 (KRYFKLSHLQMHSRKH), likely providing for effective antitumor immunity in a wide range of solid and hematological malignancies. (Microbial infection) Acts as a receptor for Epstein-Barr virus on lymphocytes.
Subunit / interactions. Heterotrimer that consists of an alpha chain HLA-DRA, a beta chain HLA-DRB1 and a peptide (peptide-MHCII). Newly synthesized alpha and beta chains forms a heterodimer (MHCII) that associates with the CD74/invariant chain (Ii) in the endoplasmic reticulum (ER). Ii is a trimer composed of three subunits and each subunit interacts with one MHCII dimer, blocking the peptide-binding cleft. As a result, MHCII molecules cannot bind peptides present in the ER. The complex of MHCII and CD74/Ii is transported in vesicles from ER to Golgi to lysosomes, where it encounters antigenic peptides generated via proteolysis of endocytosed antigens. MHCII dimers are dissociated from CD74/Ii by the combined action of proteolysis and HLA-DM. Lysosomal enzymes such as cathepsin, degrade CD74/Ii leaving a 24 amino acid remnant called class II-associated Ii or CLIP. Interacts (via the peptide binding cleft) with CLIP; this interaction inhibits antigen peptide binding before entry in the endosomal compartment. The displacement of CLIP and replacement by a high affinity peptide in lysosomes is performed by HLA-DM heterodimer. HLA-DM catalyzes CLIP dissociation from MHCII, stabilizes empty MHCII and mediates the selection of high affinity peptides. Interacts with HLA-DM heterodimer; this interaction is direct. Interacts with TCR (via CDR3). Interacts (via beta-2 domain) with CD4 coreceptor (via Ig-like V-type domain); this interaction is of exceptionally low affinity yet necessary for optimal recognition of antigenic peptides. (Microbial infection) Interacts with Staphylococcus aureus enterotoxin A/entA, enterotoxin B/entB, enterotoxin C1/entC1, enterotoxin D/entD and enterotoxin H/entH. Enterotoxins bind outside the peptide-binding cleft of MHCII: enterotoxin H/entH interacts via the beta-1 domain of MHCII and in a zinc-dependent way, whereas enterotoxin B/entB interacts primarily via the alpha-1 domain. (Microbial infection) Interacts with Epstein-Barr virus gp42 protein.
Subcellular location. Cell membrane. Endoplasmic reticulum membrane. Lysosome membrane. Late endosome membrane. Autolysosome membrane.
Tissue specificity. Expressed in professional APCs: monocyte/macrophages, dendritic cells and B cells (at protein level). Expressed in thymic epithelial cells (at protein level).
Post-translational modifications. Ubiquitinated by MARCHF1 and MARCHF8 at Lys-254 leading to sorting into the endosome system and down-regulation of MHCII.
Disease relevance. In populations of European descent, allele DRB101:03 is associated with increased susceptibility to Crohn disease and colonic ulcerative colitis. Decreased heterozygosity in individuals with colonic ulcerative colitis suggests that it acts as a recessive risk allele. Sarcoidosis 1 (SS1) [MIM:181000] An idiopathic, systemic, inflammatory disease characterized by the formation of immune granulomas in involved organs. Granulomas predominantly invade the lungs and the lymphatic system, but also skin, liver, spleen, eyes and other organs may be involved. Disease susceptibility is associated with variants affecting the gene represented in this entry. Alleles DRB104:02, DRB111:01 and DRB112:01 are associated with sarcoidosis. Allele DRB104:02 is significantly associated with specific sarcodosis phenotypes such as eye, parotid and salivary gland involvement. Multiple sclerosis (MS) [MIM:126200] A multifactorial, inflammatory, demyelinating disease of the central nervous system. Sclerotic lesions are characterized by perivascular infiltration of monocytes and lymphocytes and appear as indurated areas in pathologic specimens (sclerosis in plaques). The pathological mechanism is regarded as an autoimmune attack of the myelin sheath, mediated by both cellular and humoral immunity. Clinical manifestations include visual loss, extra-ocular movement disorders, paresthesias, loss of sensation, weakness, dysarthria, spasticity, ataxia and bladder dysfunction. Genetic and environmental factors influence susceptibility to the disease. Disease susceptibility is associated with variants affecting the gene represented in this entry. In populations of European descent, allele DRB115:01 has the strongest association with multiple sclerosis among all HLA class II alleles. Additional risk is associated with the strongly linked alleles DRB103:01 and DQB102:01 as well as with allele DRB113:03. It is postulated that bacterial or viral infection triggers the autoimmune MS. Microbial peptides having low affinity crossreactivity to MBP autoantigen, may stimulate autoreactive T cells via molecular mimicry and initiate the autoimmune inflammation. Allele DRB115:01 is associated with increased susceptibility to Goodpasture syndrome. Can present a self-peptide derived from COL4A3 (GWISLWKGFSF) on TCR (TRAV19 biased) in pathogenic CD4-positive T-helper 1 and T-helper 17 cells, triggering autoimmune inflammation. Rheumatoid arthritis (RA) [MIM:180300] An inflammatory disease with autoimmune features and a complex genetic component. It primarily affects the joints and is characterized by inflammatory changes in the synovial membranes and articular structures, widespread fibrinoid degeneration of the collagen fibers in mesenchymal tissues, and by atrophy and rarefaction of bony structures. Disease susceptibility is associated with variants affecting the gene represented in this entry. Alleles DRB104:01; DRB104:04; DRB104:05; DRB104:08; DRB110:01; DRB101:01 and DRB1*01:02 are associated with increased susceptibility to rheumatoid arthritis, where affected individuals have antibodies to cyclic citrullinated peptide (anti-CCP-positive rheumatoid arthritis). Variations at position 40 in the peptide-binding cleft of these alleles explain most of the association to rheumatoid arthritis risk.
Domain organisation. The beta-1 domain is a structural part of the peptide-binding cleft. It contains one alpha helix and 4 beta sheets, respectively forming part of the wall and the floor of the peptide-binding cleft. The other 4 beta sheets of the floor and the second alpha helix wall is formed by the alpha-1 domain of HLA-DRA. Forms hydrogen bonds with the peptide main chain via conserved amino acid in most HLA-DRB molecules. The polymorphic residues accomodate the side chains of the peptide conferring peptide specificity to distinct HLA-DRB1 alleles. The peptide-bound beta-1 domain forms hydrogen bonds with CDR2 and CDR3 alpha-domains of TCR. The beta-2 Ig-like domain mediates the interaction with CD4 coreceptor.
Polymorphism. Highly polymorphic. Polymorphic residues encode for the beta-1 domain of the peptide-binding cleft, where they contribute to variations in peptide binding and TCR recognition among different alleles. The sequence shown is that of DRB115:01. The sequences of common representative alleles of serologically distinct allele groups as defined in the catalog of common and well-documented HLA alleles, are described as variants of DRB115:01. In the context of hematological malignancy and T cell transplantation, alleles DRB103:01 and DRB113:01 present minor histocompatibility antigens derived respectively from host MTHFD1 and LY75 proteins, contributing to T cell-mediated graft-versus-leukemia effect and complete remission.
RefSeq proteins (1): NP_002115* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000353 | MHC_II_b_N | Domain |
| IPR003006 | Ig/MHC_CS | Conserved_site |
| IPR003597 | Ig_C1-set | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR011162 | MHC_I/II-like_Ag-recog | Homologous_superfamily |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR014745 | MHC_II_a/b_N | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR050160 | MHC/Immunoglobulin | Family |
Pfam: PF00969, PF07654
UniProt features (134 total): sequence variant 85, strand 16, mutagenesis site 8, binding site 5, helix 5, turn 3, disulfide bond 2, topological domain 2, region of interest 2, signal peptide 1, chain 1, glycosylation site 1, cross-link 1, transmembrane region 1, domain 1
Structure
Experimental structures (PDB)
108 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5NI9 | X-RAY DIFFRACTION | 1.33 |
| 4X5W | X-RAY DIFFRACTION | 1.34 |
| 5NIG | X-RAY DIFFRACTION | 1.35 |
| 8PJF | X-RAY DIFFRACTION | 1.48 |
| 6QZC | X-RAY DIFFRACTION | 1.64 |
| 4MD5 | X-RAY DIFFRACTION | 1.65 |
| 4MDJ | X-RAY DIFFRACTION | 1.7 |
| 8PJE | X-RAY DIFFRACTION | 1.7 |
| 8PJG | X-RAY DIFFRACTION | 1.83 |
| 6R0E | X-RAY DIFFRACTION | 1.91 |
| 1KLU | X-RAY DIFFRACTION | 1.93 |
| 3PDO | X-RAY DIFFRACTION | 1.95 |
| 4MD4 | X-RAY DIFFRACTION | 1.95 |
| 6HBY | X-RAY DIFFRACTION | 1.95 |
| 5JLZ | X-RAY DIFFRACTION | 1.99 |
| 1D5M | X-RAY DIFFRACTION | 2 |
| 1D5Z | X-RAY DIFFRACTION | 2 |
| 2G9H | X-RAY DIFFRACTION | 2 |
| 4MDI | X-RAY DIFFRACTION | 2 |
| 6CPN | X-RAY DIFFRACTION | 2 |
| 6BIY | X-RAY DIFFRACTION | 2.05 |
| 1PYW | X-RAY DIFFRACTION | 2.1 |
| 3L6F | X-RAY DIFFRACTION | 2.1 |
| 3S5L | X-RAY DIFFRACTION | 2.1 |
| 5V4M | X-RAY DIFFRACTION | 2.1 |
| 6BIJ | X-RAY DIFFRACTION | 2.1 |
| 6BIZ | X-RAY DIFFRACTION | 2.1 |
| 6NIX | X-RAY DIFFRACTION | 2.1 |
| 4I5B | X-RAY DIFFRACTION | 2.12 |
| 4MD0 | X-RAY DIFFRACTION | 2.19 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P01911-F1 | 89.33 | 0.73 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 110; 111; 122; 86; 90
Post-translational modifications (1): 254
Disulfide bonds (2): 44–108, 146–202
Glycosylation sites (1): 48
Mutagenesis-validated functional residues (8):
| Position | Phenotype |
|---|---|
| 166 | decreases the interaction with cd4; when associated with a-172. |
| 172 | decreases the interaction with cd4; when associated with a-166. |
| 177 | decreases the interaction with cd4. |
| 181 | reduces the interaction with hla-dm complex that results in impaired dissociation of clip from mhcii. |
| 187 | decreases the interaction with cd4. |
| 213 | reduces the interaction with hla-dm complex that results in impaired dissociation of clip from mhcii. |
| 216 | reduces the interaction with hla-dm complex that results in impaired dissociation of clip from mhcii. |
| 254 | impairs marchf1-dependent down-regulation through ubiquitination. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-202424 | Downstream TCR signaling |
| R-HSA-202427 | Phosphorylation of CD3 and TCR zeta chains |
| R-HSA-202430 | Translocation of ZAP-70 to Immunological synapse |
| R-HSA-202433 | Generation of second messenger molecules |
| R-HSA-2132295 | MHC class II antigen presentation |
| R-HSA-389948 | Co-inhibition by PD-1 |
| R-HSA-877300 | Interferon gamma signaling |
MSigDB gene sets: 1126 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_OR_POLYSACCHARIDE_ANTIGEN_VIA_MHC_CLASS_II, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_REGULATION_OF_INFLAMMATORY_RESPONSE_TO_ANTIGENIC_STIMULUS, GOBP_POSITIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION, MCLACHLAN_DENTAL_CARIES_UP, GOBP_POSITIVE_REGULATION_OF_HEMOPOIESIS, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GOCC_VACUOLAR_MEMBRANE, GOBP_T_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE
GO Biological Process (41): positive regulation of T cell mediated cytotoxicity (GO:0001916), inflammatory response to antigenic stimulus (GO:0002437), myeloid dendritic cell antigen processing and presentation (GO:0002469), antigen processing and presentation of endogenous peptide antigen via MHC class II (GO:0002491), peptide antigen assembly with MHC class II protein complex (GO:0002503), positive regulation of T cell mediated immune response to tumor cell (GO:0002842), negative regulation of inflammatory response to antigenic stimulus (GO:0002862), immune response (GO:0006955), humoral immune response (GO:0006959), signal transduction (GO:0007165), epidermis development (GO:0008544), detection of bacterium (GO:0016045), antigen processing and presentation of exogenous peptide antigen via MHC class II (GO:0019886), macrophage differentiation (GO:0030225), regulation of interleukin-10 production (GO:0032653), regulation of interleukin-4 production (GO:0032673), negative regulation of type II interferon production (GO:0032689), positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032831), positive regulation of insulin secretion involved in cellular response to glucose stimulus (GO:0035774), T-helper 1 type immune response (GO:0042088), negative regulation of T cell proliferation (GO:0042130), positive regulation of memory T cell differentiation (GO:0043382), regulation of T-helper cell differentiation (GO:0045622), positive regulation of monocyte differentiation (GO:0045657), positive regulation of immune response (GO:0050778), T cell receptor signaling pathway (GO:0050852), positive regulation of T cell activation (GO:0050870), protein tetramerization (GO:0051262), positive regulation of CD4-positive, alpha-beta T cell activation (GO:2000516), positive regulation of protein phosphorylation (GO:0001934), adaptive immune response (GO:0002250), immune system process (GO:0002376), antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (GO:0002504), cytoskeleton organization (GO:0007010), antigen processing and presentation (GO:0019882), positive regulation of kinase activity (GO:0033674), positive regulation of canonical NF-kappaB signal transduction (GO:0043123), positive regulation of MAPK cascade (GO:0043410), positive regulation of DNA-templated transcription (GO:0045893), positive regulation of viral entry into host cell (GO:0046598)
GO Molecular Function (8): structural constituent of cytoskeleton (GO:0005200), MHC class II protein complex binding (GO:0023026), polysaccharide binding (GO:0030247), peptide antigen binding (GO:0042605), T cell receptor binding (GO:0042608), CD4 receptor binding (GO:0042609), protein binding (GO:0005515), MHC class II receptor activity (GO:0032395)
GO Cellular Component (25): Golgi membrane (GO:0000139), immunological synapse (GO:0001772), obsolete extracellular space (GO:0005615), lysosomal membrane (GO:0005765), intermediate filament (GO:0005882), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), ER to Golgi transport vesicle membrane (GO:0012507), membrane (GO:0016020), transport vesicle membrane (GO:0030658), endocytic vesicle membrane (GO:0030666), clathrin-coated endocytic vesicle membrane (GO:0030669), late endosome membrane (GO:0031902), trans-Golgi network membrane (GO:0032588), MHC class II protein complex (GO:0042613), extracellular exosome (GO:0070062), lumenal side of endoplasmic reticulum membrane (GO:0098553), autolysosome membrane (GO:0120281), lysosome (GO:0005764), endosome (GO:0005768), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), endosome membrane (GO:0010008), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| TCR signaling | 4 |
| Adaptive Immune System | 1 |
| Regulation of T cell activation by CD28 family | 1 |
| Interferon Signaling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| antigen processing and presentation of peptide antigen via MHC class II | 3 |
| bounding membrane of organelle | 3 |
| cellular anatomical structure | 3 |
| positive regulation of T cell mediated immunity | 2 |
| immune response | 2 |
| regulation of cytokine production | 2 |
| signaling receptor binding | 2 |
| plasma membrane | 2 |
| cytoplasmic vesicle membrane | 2 |
| positive regulation of leukocyte mediated cytotoxicity | 1 |
| T cell mediated cytotoxicity | 1 |
| regulation of T cell mediated cytotoxicity | 1 |
| inflammatory response | 1 |
| dendritic cell antigen processing and presentation | 1 |
| antigen processing and presentation of endogenous peptide antigen | 1 |
| MHC class II protein complex assembly | 1 |
| peptide antigen assembly with MHC protein complex | 1 |
| T cell mediated immune response to tumor cell | 1 |
| positive regulation of immune response to tumor cell | 1 |
| regulation of T cell mediated immune response to tumor cell | 1 |
| inflammatory response to antigenic stimulus | 1 |
| regulation of inflammatory response to antigenic stimulus | 1 |
| negative regulation of inflammatory response | 1 |
| negative regulation of immune response | 1 |
| immune system process | 1 |
| response to stimulus | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| tissue development | 1 |
| response to bacterium | 1 |
| detection of other organism | 1 |
| antigen processing and presentation of exogenous peptide antigen | 1 |
| myeloid leukocyte differentiation | 1 |
| mononuclear cell differentiation | 1 |
| interleukin-10 production | 1 |
| interleukin-4 production | 1 |
| negative regulation of cytokine production | 1 |
Protein interactions and networks
STRING
3194 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| HLA-DRB1 | HLA-DRA | P01903 | 968 |
| HLA-DRB1 | Q5Y7H0 | Q5Y7H0 | 959 |
| HLA-DRB1 | PTPN22 | Q9Y2R2 | 931 |
| HLA-DRB1 | CD4 | P01730 | 879 |
| HLA-DRB1 | TNFRSF10A | O00220 | 868 |
| HLA-DRB1 | TNFRSF25 | P78507 | 848 |
| HLA-DRB1 | TNF | P01375 | 825 |
| HLA-DRB1 | BTNL2 | Q9UIR0 | 825 |
| HLA-DRB1 | IFNG | P01579 | 822 |
| HLA-DRB1 | HLA-DQA2 | P01906 | 808 |
| HLA-DRB1 | MBP | P02686 | 780 |
| HLA-DRB1 | SLC26A3 | P40879 | 769 |
| HLA-DRB1 | TOR1A | O14656 | 763 |
| HLA-DRB1 | CD8A | P01732 | 761 |
| HLA-DRB1 | HLA-DMA | P28067 | 761 |
IntAct
87 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HLA-DRA | HLA-DRB1 | psi-mi:“MI:0914”(association) | 0.880 |
| HLA-DRA | HLA-DRB1 | psi-mi:“MI:0407”(direct interaction) | 0.880 |
| HLA-DRB1 | HLA-DRA | psi-mi:“MI:0407”(direct interaction) | 0.880 |
| CD9 | ADAM10 | psi-mi:“MI:0914”(association) | 0.750 |
| HLA-DMA | HLA-DRA | psi-mi:“MI:0914”(association) | 0.620 |
| CD74 | HLA-DRA | psi-mi:“MI:0914”(association) | 0.560 |
| hspa1a_hspa1b_human-1 | HLA-DRB1 | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| hspa1a_hspa1b_human-1 | HLA-DRB1 | psi-mi:“MI:0915”(physical association) | 0.540 |
| TCTN2 | TPST2 | psi-mi:“MI:0914”(association) | 0.530 |
| HLA-DRB3 | HLA-DRB1 | psi-mi:“MI:0914”(association) | 0.530 |
| SSBP2 | CLEC18A | psi-mi:“MI:0914”(association) | 0.530 |
| HSPA8 | HLA-DRB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (167): HLA-DRB1 (Two-hybrid), HLA-DRB1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB5 (Affinity Capture-MS), PHOSPHO1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), HLA-DRB5 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS), EMC6 (Affinity Capture-MS), CNNM1 (Affinity Capture-MS)
ESM2 similar proteins: C1ITJ8, O19477, P01901, P01902, P01911, P01915, P01920, P01921, P03991, P04230, P04231, P04440, P05538, P06341, P06342, P06343, P06344, P06345, P06346, P13599, P13762, P13765, P14428, P14483, P15464, P15979, P15982, P15983, P16391, P18211, P18467, P18468, P18469, P18470, P20040, P20756, P23068, P25311, P29826, P35737
Diamond homologs: A0A0G2K7V7, C1ITJ8, O19477, O35799, P01889, P01893, P01894, P01895, P01896, P01897, P01898, P01899, P01900, P01901, P01902, P01911, P01920, P03991, P04223, P04227, P04439, P04440, P05538, P06140, P06339, P10321, P13747, P13748, P13749, P13750, P13751, P13752, P13753, P13762, P14426, P14427, P14428, P14429, P14430, P14431
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CIITA | “up-regulates quantity by expression” | HLA-DRB1 | “transcriptional regulation” |
| “EBV gH:gL:gp42” | “up-regulates activity” | HLA-DRB1 | binding |
| HLA-DRB1 | up-regulates | Membrane_fusion | |
| “RFX complex” | “up-regulates quantity by expression” | HLA-DRB1 | “transcriptional regulation” |
| VDR | “up-regulates quantity by expression” | HLA-DRB1 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 78 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Interferon gamma signaling | 8 | 21.8× | 8e-07 |
| ER-Phagosome pathway | 5 | 14.1× | 8e-04 |
| Downstream TCR signaling | 5 | 13.9× | 8e-04 |
| MHC class II antigen presentation | 6 | 11.6× | 4e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| peptide antigen assembly with MHC class II protein complex | 6 | 103.6× | 3e-09 |
| antigen processing and presentation of exogenous peptide antigen via MHC class II | 7 | 62.4× | 3e-09 |
| positive regulation of immune response | 6 | 47.4× | 4e-07 |
| positive regulation of T cell activation | 6 | 43.6× | 5e-07 |
| positive regulation of T cell mediated cytotoxicity | 5 | 41.9× | 1e-05 |
| T cell receptor signaling pathway | 5 | 12.4× | 2e-03 |
| adaptive immune response | 8 | 11.1× | 5e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
132 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 7 |
| Likely benign | 20 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1696856 | NM_002124.4(HLA-DRB1):c.242A>T (p.Glu81Val) | Pathogenic |
| 3065325 | NM_002124.4(HLA-DRB1):c.764-2A>G | Likely pathogenic |
SpliceAI
782 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:32580740:CCTCA:C | donor_loss | 1.0000 |
| 6:32580741:CTCA:C | donor_loss | 1.0000 |
| 6:32580742:TCA:T | donor_loss | 1.0000 |
| 6:32580743:CA:C | donor_loss | 1.0000 |
| 6:32580744:A:AG | donor_loss | 1.0000 |
| 6:32580745:C:CG | donor_loss | 1.0000 |
| 6:32580745:CCTTT:C | donor_gain | 1.0000 |
| 6:32580852:TGCTC:T | acceptor_gain | 1.0000 |
| 6:32580854:CTC:C | acceptor_gain | 1.0000 |
| 6:32580856:CCT:C | acceptor_loss | 1.0000 |
| 6:32580857:C:CC | acceptor_gain | 1.0000 |
| 6:32581555:A:AC | donor_gain | 1.0000 |
| 6:32581555:ACT:A | donor_gain | 1.0000 |
| 6:32581555:ACTC:A | donor_gain | 1.0000 |
| 6:32581556:C:CC | donor_gain | 1.0000 |
| 6:32581556:CT:C | donor_gain | 1.0000 |
| 6:32581556:CTC:C | donor_gain | 1.0000 |
| 6:32581556:CTCC:C | donor_gain | 1.0000 |
| 6:32581558:C:CA | donor_gain | 1.0000 |
| 6:32581839:C:CC | acceptor_gain | 1.0000 |
| 6:32589641:A:AC | donor_gain | 1.0000 |
| 6:32589642:C:CC | donor_gain | 1.0000 |
| 6:32589642:CGT:C | donor_gain | 1.0000 |
| 6:32579103:TC:T | acceptor_gain | 0.9900 |
| 6:32579104:CC:C | acceptor_gain | 0.9900 |
| 6:32579104:CCT:C | acceptor_loss | 0.9900 |
| 6:32579105:C:CC | acceptor_gain | 0.9900 |
| 6:32579105:CTGCA:C | acceptor_loss | 0.9900 |
| 6:32579106:T:C | acceptor_loss | 0.9900 |
| 6:32580245:A:AG | donor_loss | 0.9900 |
AlphaMissense
1721 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:32581756:G:C | F151L | 0.989 |
| 6:32581756:G:T | F151L | 0.989 |
| 6:32581758:A:G | F151L | 0.989 |
| 6:32581657:G:C | F184L | 0.975 |
| 6:32581657:G:T | F184L | 0.975 |
| 6:32581659:A:G | F184L | 0.975 |
| 6:32584272:G:C | F69L | 0.973 |
| 6:32584272:G:T | F69L | 0.973 |
| 6:32584274:A:G | F69L | 0.973 |
| 6:32581772:C:G | C146S | 0.962 |
| 6:32581773:A:T | C146S | 0.962 |
| 6:32581558:C:A | W217C | 0.960 |
| 6:32581558:C:G | W217C | 0.960 |
| 6:32581731:A:G | W160R | 0.958 |
| 6:32581731:A:T | W160R | 0.958 |
| 6:32584156:C:G | C108S | 0.954 |
| 6:32584157:A:T | C108S | 0.954 |
| 6:32581604:C:G | C202S | 0.951 |
| 6:32581605:A:T | C202S | 0.951 |
| 6:32581773:A:G | C146R | 0.950 |
| 6:32581591:G:C | H206Q | 0.943 |
| 6:32581591:G:T | H206Q | 0.943 |
| 6:32581757:A:C | F151C | 0.943 |
| 6:32584251:G:C | F76L | 0.942 |
| 6:32584251:G:T | F76L | 0.942 |
| 6:32584253:A:G | F76L | 0.942 |
| 6:32581771:G:C | C146W | 0.941 |
| 6:32581772:C:T | C146Y | 0.941 |
| 6:32581757:A:G | F151S | 0.939 |
| 6:32584155:G:C | C108W | 0.938 |
dbSNP variants (sampled 300 via entrez): RS1000965454 (6:32590534 G>A), RS1001163955 (6:32583614 T>C), RS1001512056 (6:32586212 C>A,G,T), RS1001913295 (6:32590027 T>G), RS1002948666 (6:32583596 A>G), RS1005031519 (6:32591470 A>G), RS1005364581 (6:32591308 T>A,C,G), RS1005609140 (6:32586940 T>G), RS1007014011 (6:32581232 T>C), RS1007785636 (6:32591765 T>C), RS1008494733 (6:32585875 C>T), RS1009685936 (6:32584512 C>A,G,T), RS1013880283 (6:32585449 A>G), RS1016199839 (6:32586049 T>A,C), RS1016321651 (6:32591327 T>A)
Disease associations
OMIM: gene MIM:142857 | disease phenotypes: MIM:181000, MIM:126200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| systemic lupus erythematosus | Supportive | Unknown |
Mondo (4): sarcoidosis, susceptibility to, 1 (MONDO:0008399), multiple sclerosis, susceptibility to 1 (MONDO:0021571), multiple sclerosis, susceptibility to (MONDO:0007462), systemic lupus erythematosus (MONDO:0007915)
Orphanet (1): Sarcoidosis (Orphanet:797)
HPO phenotypes
306 total (30 of 306 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000017 | Nocturia |
| HP:0000019 | Urinary hesitancy |
| HP:0000020 | Urinary incontinence |
| HP:0000083 | Renal insufficiency |
| HP:0000093 | Proteinuria |
| HP:0000099 | Glomerulonephritis |
| HP:0000121 | Nephrocalcinosis |
| HP:0000155 | Oral ulcer |
| HP:0000206 | Glossitis |
| HP:0000217 | Xerostomia |
| HP:0000360 | Tinnitus |
| HP:0000365 | Hearing impairment |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000421 | Epistaxis |
| HP:0000433 | Abnormal nasal mucosa morphology |
| HP:0000488 | Retinopathy |
| HP:0000499 | Abnormal eyelash morphology |
| HP:0000501 | Glaucoma |
| HP:0000502 | Abnormal conjunctiva morphology |
| HP:0000505 | Visual impairment |
| HP:0000508 | Ptosis |
| HP:0000518 | Cataract |
| HP:0000534 | Abnormal eyebrow morphology |
| HP:0000541 | Retinal detachment |
| HP:0000554 | Uveitis |
| HP:0000572 | Visual loss |
| HP:0000597 | Ophthalmoparesis |
| HP:0000613 | Photophobia |
GWAS associations
303 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000040_4 | Rheumatoid arthritis | 8.000000e-27 |
| GCST000054_4 | Type 1 diabetes | 1.000000e-16 |
| GCST000070_2 | Rheumatoid arthritis | 1.000000e-108 |
| GCST000206_1 | Arthritis (juvenile idiopathic) | 2.000000e-10 |
| GCST000232_5 | Rheumatoid arthritis | 4.000000e-186 |
| GCST000252_1 | Multiple sclerosis | 9.000000e-11 |
| GCST000311_1 | Ulcerative colitis | 1.000000e-16 |
| GCST000424_2 | Multiple sclerosis | 4.000000e-225 |
| GCST000425_4 | Multiple sclerosis | 7.000000e-184 |
| GCST000507_8 | Systemic lupus erythematosus | 1.000000e-12 |
| GCST000677_3 | Rheumatoid arthritis | 2.000000e-58 |
| GCST000735_1 | Lumiracoxib-related liver injury | 7.000000e-25 |
| GCST000763_11 | Immunoglobulin A | 3.000000e-33 |
| GCST000763_4 | Immunoglobulin A | 2.000000e-33 |
| GCST000964_4 | Ulcerative colitis | 1.000000e-55 |
| GCST001009_5 | Nephropathy | 2.000000e-26 |
| GCST001022_3 | Rheumatoid arthritis | 5.000000e-23 |
| GCST001043_1 | Response to interferon beta therapy | 4.000000e-10 |
| GCST001118_1 | Ulcerative colitis or Crohn’s disease | 2.000000e-70 |
| GCST001156_1 | Systemic sclerosis | 1.000000e-11 |
| GCST001323_1 | Nodular sclerosis Hodgkin lymphoma | 8.000000e-18 |
| GCST001323_2 | Nodular sclerosis Hodgkin lymphoma | 2.000000e-07 |
| GCST001341_4 | Multiple sclerosis | 1.000000e-206 |
| GCST001364_6 | IgA nephropathy | 4.000000e-20 |
| GCST001474_7 | Hypothyroidism | 5.000000e-07 |
| GCST001547_7 | Immune response to anthrax vaccine | 6.000000e-06 |
| GCST001603_1 | Hepatocellular carcinoma | 5.000000e-22 |
| GCST001728_3 | Ulcerative colitis | 5.000000e-133 |
| GCST001757_10 | Schizophrenia | 5.000000e-06 |
| GCST001785_9 | Crohn’s disease | 9.000000e-59 |
EFO canonical traits (52, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004747 | protein measurement |
| EFO:0004645 | response to vaccine |
| EFO:0005206 | oligoclonal band measurement |
| EFO:0006797 | neurofibrillary tangles measurement |
| EFO:0006929 | IgG index |
| EFO:0007017 | peanut allergy measurement |
| EFO:0004881 | asparaginase hypersensitivity |
| EFO:1001489 | skin and soft tissue Staphylococcus aureus infection |
| EFO:0007790 | Epstein Barr virus nuclear antigen 1 IgG measurement |
| EFO:0007791 | rheumatoid factor seropositivity measurement |
| EFO:0007837 | anti-citrullinated protein antibody seropositivity |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0008002 | physical activity measurement |
| EFO:0007986 | reticulocyte count |
| EFO:0004340 | body mass index |
| EFO:0007796 | parental longevity |
| EFO:0008402 | susceptibility to cold sores measurement |
| EFO:0008401 | susceptibility to shingles measurement |
| EFO:0008406 | susceptibility to plantar warts measurement |
| EFO:0008407 | susceptibility to Mycobacterium tuberculosis infection measurement |
| EFO:0008409 | susceptibility to scarlet fever measurement |
| EFO:0008410 | susceptibility to pneumonia measurement |
| EFO:0008412 | susceptibility to vaginal yeast infection measurement |
| EFO:0007904 | susceptibility to childhood ear infection measurement |
| EFO:0007924 | tonsillectomy risk measurement |
| EFO:0009184 | heart rate response to exercise |
| EFO:0006941 | grip strength measurement |
| EFO:0004570 | bilirubin measurement |
| EFO:0004587 | lymphocyte count |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008180 | Lupus Erythematosus, Systemic | C17.300.480; C20.111.590 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3831291 (SINGLE PROTEIN), CHEMBL3988561 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
28 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| HLA-DRB1*01:01 | Toxicity | 2B | nevirapine | |
| HLA-DRB101:01, HLA-DRB104:06 | Toxicity | 3 | atorvastatin;fluvastatin;HMG-CoA reductase inhibitors;pravastatin;rosuvastatin;simvastatin | |
| HLA-DRB1*01:02 | Toxicity | 3 | nevirapine | Drug Reaction with Eosinophilia and Systemic Symptoms;Stevens-Johnson Syndrome;Toxic Epidermal Necrolysis |
| HLA-DRB1*01:03 | Toxicity | 3 | nevirapine | Drug Reaction with Eosinophilia and Systemic Symptoms;Stevens-Johnson Syndrome;Toxic Epidermal Necrolysis |
| HLA-DRB1*03:01 | Toxicity | 3 | allopurinol | Severe Cutaneous Adverse Reactions |
| HLA-DRB1*03:01 | Toxicity | 3 | carbamazepine | Maculopapular Exanthema |
| HLA-DRB103:01, HLA-DRB104:04 | Toxicity | 3 | infliximab | Drug-induced liver injury |
| HLA-DRB1*04:01 | Efficacy | 3 | interferon beta-1a | Multiple Sclerosis |
| HLA-DRB1*04:02 | Toxicity | 3 | clozapine | Agranulocytosis |
| HLA-DRB1*04:03 | Toxicity | 3 | oxcarbazepine | Epilepsy |
| HLA-DRB1*04:04 | Toxicity | 3 | nevirapine | Drug Reaction with Eosinophilia and Systemic Symptoms;Stevens-Johnson Syndrome;Toxic Epidermal Necrolysis |
| HLA-DRB1*07:01 | Toxicity | 3 | azathioprine;mercaptopurine | Drug Toxicity;Inflammatory Bowel Diseases;Pancreatitis |
| HLA-DRB1*07:01 | Toxicity | 3 | pegaspargase | |
| HLA-DRB1*07:01 | Toxicity | 3 | lapatinib | Toxic liver disease |
| HLA-DRB1*08:01 | Toxicity | 3 | nevirapine | Drug Reaction with Eosinophilia and Systemic Symptoms;Stevens-Johnson Syndrome;Toxic Epidermal Necrolysis |
| HLA-DRB1*08:03 | Toxicity | 3 | Antithyroid Preparations | Agranulocytosis;Graves Disease |
| HLA-DRB1*09:01 | Toxicity | 3 | allopurinol | Drug Hypersensitivity |
| HLA-DRB1*10:01 | Toxicity | 3 | nevirapine | Drug Reaction with Eosinophilia and Systemic Symptoms;Stevens-Johnson Syndrome;Toxic Epidermal Necrolysis |
| HLA-DRB1*11:01 | Toxicity | 3 | Antiinflammatory agents;non-steroids | Anaphylaxis |
| HLA-DRB1*13:02 | Toxicity | 3 | allopurinol | Severe Cutaneous Adverse Reactions |
| HLA-DRB1*14:01 | Toxicity | 3 | allopurinol | Drug Hypersensitivity |
| HLA-DRB115:01, HLA-DRB116:02 | Toxicity | 3 | dapsone | Drug Hypersensitivity |
| HLA-DRB1*15:02 | Toxicity | 3 | allopurinol | Severe Cutaneous Adverse Reactions |
| HLA-DRB1*16:01 | Toxicity | 3 | flupirtine | Drug-induced liver injury |
| rs17211071 | Toxicity | 3 | dapsone | Drug Hypersensitivity |
| rs17885382 | Toxicity | 3 | asparaginase | Acute lymphoblastic leukemia |
| rs201929247 | Toxicity | 3 | dapsone | Drug Hypersensitivity |
| rs701829 | Toxicity | 3 | dapsone | Drug Hypersensitivity |
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs17885382 | HLA-DRB1 | 3 | 3.00 | 1 | asparaginase |
| rs201929247 | HLA-DRB1 | 3 | 3.00 | 1 | dapsone |
| rs701829 | HLA-DRB1 | 3 | 3.00 | 1 | dapsone |
| rs17211071 | HLA-DRB1 | 3 | 3.00 | 1 | dapsone |
ChEMBL bioactivities
81 potent at pChembl≥5 of 95 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.22 | IC50 | 0.6 | nM | CHEMBL1253324 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL292340 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL79117 |
| 8.40 | IC50 | 4 | nM | CHEMBL1253322 |
| 8.40 | IC50 | 4 | nM | CHEMBL1253325 |
| 8.28 | IC50 | 5.3 | nM | CHEMBL421516 |
| 8.19 | IC50 | 6.5 | nM | CHEMBL75687 |
| 8.00 | IC50 | 9.9 | nM | CHEMBL79117 |
| 7.96 | IC50 | 11 | nM | CHEMBL1253323 |
| 7.94 | IC50 | 11.5 | nM | CHEMBL1253323 |
| 7.92 | IC50 | 12 | nM | CHEMBL311245 |
| 7.89 | IC50 | 13 | nM | CHEMBL4284706 |
| 7.89 | IC50 | 13 | nM | CHEMBL4277461 |
| 7.80 | IC50 | 16 | nM | CHEMBL80447 |
| 7.77 | IC50 | 17 | nM | CHEMBL292340 |
| 7.77 | IC50 | 17 | nM | CHEMBL80597 |
| 7.72 | IC50 | 19 | nM | CHEMBL77558 |
| 7.66 | IC50 | 22 | nM | CHEMBL81463 |
| 7.64 | IC50 | 23 | nM | CHEMBL79058 |
| 7.60 | IC50 | 25 | nM | CHEMBL80852 |
| 7.57 | IC50 | 27 | nM | CHEMBL1253321 |
| 7.55 | IC50 | 28 | nM | CHEMBL78426 |
| 7.55 | IC50 | 28 | nM | CHEMBL1253327 |
| 7.51 | IC50 | 31 | nM | CHEMBL312367 |
| 7.50 | IC50 | 32 | nM | CHEMBL420761 |
| 7.46 | IC50 | 35 | nM | CHEMBL421516 |
| 7.37 | IC50 | 43 | nM | CHEMBL80345 |
| 7.34 | IC50 | 46 | nM | CHEMBL310163 |
| 7.34 | IC50 | 46 | nM | CHEMBL309641 |
| 7.25 | IC50 | 56 | nM | CHEMBL4292594 |
| 7.20 | IC50 | 63 | nM | CHEMBL75687 |
| 7.17 | IC50 | 67 | nM | CHEMBL310312 |
| 7.14 | IC50 | 73 | nM | CHEMBL77558 |
| 7.12 | IC50 | 75 | nM | CHEMBL80597 |
| 7.09 | IC50 | 81 | nM | CHEMBL310625 |
| 7.09 | IC50 | 81 | nM | CHEMBL78541 |
| 7.09 | IC50 | 82 | nM | CHEMBL311245 |
| 7.07 | IC50 | 85 | nM | CHEMBL79058 |
| 7.06 | IC50 | 87 | nM | CHEMBL4277461 |
| 6.85 | IC50 | 140 | nM | CHEMBL76898 |
| 6.85 | IC50 | 140 | nM | CHEMBL80447 |
| 6.85 | IC50 | 140 | nM | CHEMBL309610 |
| 6.80 | IC50 | 160 | nM | CHEMBL311939 |
| 6.77 | IC50 | 170 | nM | CHEMBL420380 |
| 6.75 | IC50 | 180 | nM | CHEMBL309641 |
| 6.70 | IC50 | 200 | nM | CHEMBL79025 |
| 6.64 | IC50 | 230 | nM | CHEMBL80176 |
| 6.62 | IC50 | 240 | nM | CHEMBL80527 |
| 6.57 | IC50 | 270 | nM | CHEMBL80563 |
| 6.54 | IC50 | 290 | nM | CHEMBL81463 |
PubChem BioAssay actives
14 with measured affinity, of 32 total; 9 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S,3R)-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-4-amino-2-[[(2S)-5-amino-2-[[(2S)-6-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-1-[(2S)-2-amino-3-[5-(dimethylamino)-1,3-dioxoisoindol-2-yl]propanoyl]pyrrolidine-2-carbonyl]amino]hexanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-methylbutanoyl]amino]hexanoyl]amino]-5-oxopentanoyl]amino]-4-oxobutanoyl]amino]-3-hydroxybutanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-3-hydroxybutanoic acid | 513612: Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells by ELISA | ic50 | 0.0006 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-amino-3-[5-(dimethylamino)-1,3-dioxoisoindol-2-yl]propanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-3-hydroxypropanoyl]amino]-4-methylsulfanylbutanoyl]amino]propanoyl]amino]propanoyl]amino]propanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 513612: Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells by ELISA | ic50 | 0.0040 | uM |
| (2S,3R)-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-4-amino-2-[[(2S)-5-amino-2-[[(2S)-6-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-pyrrolidine-2-carbonyl]amino]hexanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-methylbutanoyl]amino]hexanoyl]amino]-5-oxopentanoyl]amino]-4-oxobutanoyl]amino]-3-hydroxybutanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-3-hydroxybutanoic acid | 513612: Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells by ELISA | ic50 | 0.0040 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-amino-3-[6-(dimethylamino)-1,3-dioxobenzo[f]isoindol-2-yl]propanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-3-hydroxypropanoyl]amino]-4-methylsulfanylbutanoyl]amino]propanoyl]amino]propanoyl]amino]propanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 513624: Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells at acidic pH by ELISA | ic50 | 0.0110 | uM |
| (4S)-4-amino-5-[[(2S)-4-amino-1-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-[(2S)-2-[[(2S)-1-[[(2S)-4-amino-1-[[(2S,3S)-1-[[(2S)-1-[[(2S,3R)-1-[(2S)-2-[[(1S)-1-carboxy-4-(diaminomethylideneamino)butyl]carbamoyl]pyrrolidin-1-yl]-3-hydroxy-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-1,4-dioxobutan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]carbamoyl]pyrrolidine-1-carbonyl]pyrrolidin-1-yl]-3-(1H-imidazol-5-yl)-1-oxopropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]carbamoyl]pyrrolidin-1-yl]-1,4-dioxobutan-2-yl]amino]-5-oxopentanoic acid | 1402036: Inhibition of biotin-labeled MBP (85 to 99 residues) binding to HLA class 2 DRB1*1501 mutant allele after 2 hrs by TMB + substrate-chromogen based assay | ic50 | 0.0130 | uM |
| (4S)-5-[[(2S)-4-amino-1-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-[(2S)-2-[[(2S)-1-[[(2S)-4-amino-1-[[(2S,3S)-1-[[(2S)-1-[[(2S,3R)-1-[(2S)-2-[[(1S)-1-carboxy-4-(diaminomethylideneamino)butyl]carbamoyl]pyrrolidin-1-yl]-3-hydroxy-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-1,4-dioxobutan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]carbamoyl]pyrrolidine-1-carbonyl]pyrrolidin-1-yl]-3-(1H-imidazol-5-yl)-1-oxopropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]carbamoyl]pyrrolidin-1-yl]-1,4-dioxobutan-2-yl]amino]-4-(6-aminohexanoylamino)-5-oxopentanoic acid | 1402036: Inhibition of biotin-labeled MBP (85 to 99 residues) binding to HLA class 2 DRB1*1501 mutant allele after 2 hrs by TMB + substrate-chromogen based assay | ic50 | 0.0130 | uM |
| 3-[[(2S)-2-acetamido-3-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(1S)-1-carboxy-3-methylbutyl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-4-methylsulfanyl-1-oxobutan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-3-oxopropyl]carbamoyl]-6-(dimethylamino)naphthalene-2-carboxylic acid | 513624: Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells at acidic pH by ELISA | ic50 | 0.0270 | uM |
| 2-[2-[[(2S)-2-acetamido-3-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(1S)-1-carboxy-3-methylbutyl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-4-methylsulfanyl-1-oxobutan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-3-oxopropyl]amino]-2-oxoethyl]-5-(dimethylamino)benzoic acid | 513624: Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells at acidic pH by ELISA | ic50 | 0.0280 | uM |
| (4S)-5-[[(2S)-4-amino-1-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-[(2S)-2-[[(2S)-1-[[(2S)-4-amino-1-[[(2S,3S)-1-[[(2S)-1-[[(2S,3R)-1-[(2S)-2-[[(1S)-4-carbamimidamido-1-carboxybutyl]carbamoyl]pyrrolidin-1-yl]-3-hydroxy-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-1,4-dioxobutan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]carbamoyl]pyrrolidine-1-carbonyl]pyrrolidin-1-yl]-3-(1H-imidazol-5-yl)-1-oxopropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]carbamoyl]pyrrolidin-1-yl]-1,4-dioxobutan-2-yl]amino]-4-[6-[3-[[2-[4-[(4-hydroxy-9,10-dioxoanthracen-1-yl)amino]butylamino]-2-oxoethyl]disulfanyl]propanoylamino]hexanoylamino]-5-oxopentanoic acid | 1402036: Inhibition of biotin-labeled MBP (85 to 99 residues) binding to HLA class 2 DRB1*1501 mutant allele after 2 hrs by TMB + substrate-chromogen based assay | ic50 | 0.0560 | uM |
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation | 3 |
| beryllium sulfate | increases expression, increases response to substance | 2 |
| Arsenic | affects expression | 2 |
| Estradiol | decreases expression, decreases reaction, increases expression, affects cotreatment | 2 |
| Lead | affects expression, decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| Valproic Acid | affects expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Antirheumatic Agents | decreases expression | 2 |
| perfluorotetradecanoic acid | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| ethyl-p-hydroxybenzoate | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| nickel chloride | affects cotreatment, increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| perfluorobutyric acid | increases expression | 1 |
| lumiracoxib | affects response to substance | 1 |
| bisphenol S | decreases methylation | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| Celecoxib | affects expression | 1 |
| Irinotecan | increases expression | 1 |
| Gefitinib | affects expression | 1 |
| Temozolomide | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Cefepime | affects expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Allergens | affects cotreatment, increases expression | 1 |
ChEMBL screening assays
17 unique, capped per target: 17 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1252964 | Binding | Displacement of biotin-HA from recombinant soluble HLA-DR1 expressed in human T2 cells by ELISA | Fluorogenic probes for monitoring peptide binding to class II MHC proteins in living cells. — Nat Chem Biol |
Cellosaurus cell lines
9 cell lines: 4 hybrid cell line, 3 spontaneously immortalized cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_9W15 | T2.DR4 | Hybrid cell line | |
| CVCL_9W16 | T2.DR4/DM | Hybrid cell line | |
| CVCL_9W17 | T2.DR3 | Hybrid cell line | |
| CVCL_9W18 | T2.DR3/DM | Hybrid cell line | |
| CVCL_9W22 | BLS-1.DR4 | Transformed cell line | Male |
| CVCL_9W23 | BLS-1.DR5 | Transformed cell line | Male |
| CVCL_V069 | DAP.3-DR1 | Spontaneously immortalized cell line | Male |
| CVCL_V070 | DAP.3-DR4 | Spontaneously immortalized cell line | Male |
| CVCL_V120 | LDR2b | Spontaneously immortalized cell line | Male |
Clinical trials (associated diseases)
521 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00120887 | PHASE4 | COMPLETED | Lupus Atherosclerosis Prevention Study |
| NCT00125307 | PHASE4 | COMPLETED | Tacrolimus for the Treatment of Systemic Lupus Erythematosus With Membranous Nephritis |
| NCT00188188 | PHASE4 | UNKNOWN | Study of Endothelial Dysfunction in Systemic Lupus and Its Role in Heart Disease |
| NCT00371501 | PHASE4 | COMPLETED | Aspirin and Statins for Prevention of Atherosclerosis and Arterial Thromboembolism in Systemic Lupus Erythematosus |
| NCT00392093 | PHASE4 | COMPLETED | Effect of Hormone Replacement Therapy on Lupus Activity |
| NCT00413361 | PHASE4 | COMPLETED | The Reduction of Systemic Lupus Erythematosus Flares :Study PLUS |
| NCT00508898 | PHASE4 | WITHDRAWN | The Efficacy and Safety of Calcitriol for the Treatment of Lupus Nephritis and Persistent Proteinuria |
| NCT00668330 | PHASE4 | COMPLETED | Steroid Induced Osteoporosis in Patients With Systemic Lupus Erythematosus |
| NCT00739050 | PHASE4 | TERMINATED | Effect of Simvastatin on Endothelial Function in Premenopausal Women With Systemic Lupus Erythematosus (0733-271)(TERMINATED) |
| NCT00815282 | PHASE4 | COMPLETED | Immune Response After Human Papillomavirus Vaccination in Patients With Autoimmune Disease |
| NCT00828178 | PHASE4 | COMPLETED | Efficacy of Fish Oil in Lupus Patients |
| NCT00866229 | PHASE4 | UNKNOWN | Efficacy and Adverse Effect of Simvastatin Compare to Rosuvastatin in Systemic Lupus Erythematosus (SLE) Patients With Corticosteroid Therapy and High Low-Density Lipoprotein (LDL) Cholesterol Level |
| NCT00911521 | PHASE4 | COMPLETED | Immunogenicity and Safety of a Quadrivalent Human Papillomavirus (HPV) Vaccine in Patients With SLE: a Controlled Study |
| NCT01101802 | PHASE4 | COMPLETED | Mycophenolate Mofetil in Systemic Lupus Erythematosus (MISSILE) |
| NCT01112215 | PHASE4 | COMPLETED | Enteric-coated Mycophenolate Sodium Versus Azathioprine for the Extra-renal Lupus Manifestations |
| NCT01151644 | PHASE4 | UNKNOWN | Safety and Efficacy of Anti-Pandemic H1N1 Vaccination in Rheumatic Diseases |
| NCT01276782 | PHASE4 | WITHDRAWN | Levothyroxine in Pregnant SLE Patients |
| NCT01322308 | PHASE4 | COMPLETED | Effect of Pioglitazone on Endothelial Function in Premenopausal Women With Uncomplicated Systemic Lupus Erythematosus |
| NCT01359826 | PHASE4 | WITHDRAWN | The Effect of Milnacipran on Fatigue and Quality of Life in Lupus Patients |
| NCT01597492 | PHASE4 | COMPLETED | A Study to Evaluate the Effect of Belimumab on Vaccine Responses in Subjects With Systemic Lupus Erythematosus (SLE) |
| NCT01632241 | PHASE4 | COMPLETED | Efficacy and Safety of Belimumab in Black Race Patients With Systemic Lupus Erythematosus (SLE) |
| NCT01705977 | PHASE4 | COMPLETED | Belimumab Assessment of Safety in SLE |
| NCT01753401 | PHASE4 | COMPLETED | Acthar for the Treatment of Systemic Lupus Erythematosus (SLE) in Patients With a History of Persistently Active Disease |
| NCT02270970 | PHASE4 | UNKNOWN | Evaluation of Belimumab Impact on a BLyS Activity Signature Test in the Absence of Confounding Polypharmacy |
| NCT02477150 | PHASE4 | COMPLETED | Safety and Immunogenicity of a Zoster Vaccine in SLE |
| NCT02741960 | PHASE4 | COMPLETED | The Effect of Metformin on Reducing Lupus Flares |
| NCT02779153 | PHASE4 | WITHDRAWN | Acthar SLE (Systemic Lupus Erythematosus) |
| NCT02953821 | PHASE4 | COMPLETED | Acthar Gel for Active Systemic Lupus Erythematosus (SLE) |
| NCT03042260 | PHASE4 | UNKNOWN | Prophylactic Trimethoprim/Sulfamethoxazole to Prevent Severe Infections in Patients With Lupus Erythematous |
| NCT03098823 | PHASE4 | COMPLETED | A Crossover Study to Compare RAYOS to IR Prednisone to Improve Fatigue and Morning Symptoms for SLE |
| NCT03122431 | PHASE4 | COMPLETED | Relevance of Monitoring Blood and Salivar Levels of Drugs Used in Rheumatic Autoimmune Diseases |
| NCT03543839 | PHASE4 | RECRUITING | Trial of Belimumab in Early Lupus |
| NCT04447053 | PHASE4 | UNKNOWN | Sequential Belimumab and T-cell Based Therapy in SLE |
| NCT04515719 | PHASE4 | COMPLETED | Efficacy and Safety of Belimumab in SLE Patients |
| NCT04893161 | PHASE4 | UNKNOWN | A Model About the Response of Belimumab in SLE |
| NCT04908865 | PHASE4 | COMPLETED | Open-label Study of Belimumab Plus Standard Therapy in Chinese Pediatric Participants With Active Systemic Lupus Erythematosus (SLE) |
| NCT04956484 | PHASE4 | COMPLETED | Belimumab In Early Systemic Lupus Erythematosus |
| NCT05559671 | PHASE4 | RECRUITING | Safety of the Herpes Zoster Subunit Vaccine in Lupus |
| NCT05666336 | PHASE4 | UNKNOWN | Multi-omics Studies on the Efficacy of Telitacicept in Chinese SLE Patients |
| NCT05748925 | PHASE4 | COMPLETED | Cardio Renal Effects of SGLT2 Inhibitors Among Lupus Nephritis Patients |
Related Atlas pages
- Associated diseases: systemic lupus erythematosus
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): adult-onset myasthenia gravis, B-cell chronic lymphocytic leukemia, cervical carcinoma, cryoglobulinemia, drug-induced liver injury, Epstein-Barr virus infection, extranodal nasal NK/T cell lymphoma, hepatitis B virus infection, hepatocellular carcinoma, Hodgkin’s lymphoma, mixed cellularity, hypothyroidism, IgA glomerulonephritis, kidney disorder, lymphoma, multiple sclerosis, susceptibility to, multiple sclerosis, susceptibility to 1, myasthenia gravis, myositis disease, nephrotic syndrome, neuroblastoma, neuromyelitis optica, nodular sclerosis classical Hodgkin lymphoma, pemphigus vulgaris, presbycusis, sarcoidosis, susceptibility to, 1, Sjogren syndrome, small cell lung carcinoma, staphylococcus aureus infection, systemic lupus erythematosus, systemic sclerosis, Takayasu arteritis, temporal arteritis, tuberculosis, typhoid fever, visceral leishmaniasis, Vogt-Koyanagi-Harada disease