HM13-AS1

Summary

HM13-AS1 (HM13 antisense RNA 1, HGNC:41940) is a long non-coding RNA gene on chromosome 20q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41940
Approved symbol	HM13-AS1
Name	HM13 antisense RNA 1
Location	20q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230613
Ensembl biotype	lncRNA
Entrez	100874042
RNAcentral	URS0000A76D45 — lncRNA, 609 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000412178, ENST00000765069, ENST00000765070, ENST00000765071

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412178 — 3 exons

Exon	Start	End
ENSE00001711863	31567707	31567948
ENSE00001729066	31572799	31572923
ENSE00001766853	31573142	31573263

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 90.48.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2810 / max 15.0808, expressed in 163 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186826	0.2810	163

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.48	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.04	gold quality
bone marrow cell	CL:0002092	76.21	gold quality
bone marrow	UBERON:0002371	71.68	gold quality
monocyte	CL:0000576	69.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.14	gold quality
skeletal muscle tissue	UBERON:0001134	67.22	gold quality
ventricular zone	UBERON:0003053	66.98	gold quality
liver	UBERON:0002107	66.60	gold quality
granulocyte	CL:0000094	65.64	gold quality
mucosa of transverse colon	UBERON:0004991	65.53	gold quality
ganglionic eminence	UBERON:0004023	65.40	gold quality
right lobe of liver	UBERON:0001114	65.17	gold quality
muscle of leg	UBERON:0001383	65.13	gold quality
apex of heart	UBERON:0002098	64.65	gold quality
gastrocnemius	UBERON:0001388	64.55	gold quality
cortical plate	UBERON:0005343	64.01	gold quality
blood	UBERON:0000178	63.78	gold quality
lymph node	UBERON:0000029	63.39	gold quality
tonsil	UBERON:0002372	61.93	gold quality
primary visual cortex	UBERON:0002436	60.33	gold quality
islet of Langerhans	UBERON:0000006	60.08	gold quality
heart left ventricle	UBERON:0002084	59.66	gold quality
fundus of stomach	UBERON:0001160	59.46	gold quality
gall bladder	UBERON:0002110	59.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.31	gold quality
placenta	UBERON:0001987	58.80	gold quality
right adrenal gland	UBERON:0001233	58.49	gold quality
left adrenal gland cortex	UBERON:0035825	58.46	gold quality
right adrenal gland cortex	UBERON:0035827	58.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.